Multiple sequence alignment - TraesCS5D01G513700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G513700 chr5D 100.000 4332 0 0 1 4332 537679336 537675005 0.000000e+00 8000.0
1 TraesCS5D01G513700 chr5D 83.799 537 76 10 2897 3424 537738036 537737502 2.330000e-137 499.0
2 TraesCS5D01G513700 chr5D 81.641 256 42 5 2935 3188 537751091 537750839 1.580000e-49 207.0
3 TraesCS5D01G513700 chr4A 91.232 901 52 15 2712 3592 631926142 631925249 0.000000e+00 1201.0
4 TraesCS5D01G513700 chr4A 94.985 658 22 8 3677 4332 631925041 631924393 0.000000e+00 1022.0
5 TraesCS5D01G513700 chr4A 84.591 954 87 32 1317 2241 631927566 631926644 0.000000e+00 893.0
6 TraesCS5D01G513700 chr4A 89.720 428 36 4 2230 2649 631926567 631926140 1.370000e-149 540.0
7 TraesCS5D01G513700 chr4A 90.231 389 18 10 776 1160 631928144 631927772 1.400000e-134 490.0
8 TraesCS5D01G513700 chr4A 85.057 435 46 5 1601 2027 332964663 332965086 4.000000e-115 425.0
9 TraesCS5D01G513700 chr4A 87.059 340 39 4 3127 3463 631940438 631940101 3.160000e-101 379.0
10 TraesCS5D01G513700 chr4A 86.777 242 11 7 553 777 631928415 631928178 2.590000e-62 250.0
11 TraesCS5D01G513700 chr4A 87.234 141 17 1 2928 3067 631942212 631942072 4.480000e-35 159.0
12 TraesCS5D01G513700 chr4A 100.000 37 0 0 3628 3664 631925072 631925036 7.770000e-08 69.4
13 TraesCS5D01G513700 chr5B 89.192 953 54 18 2712 3630 678340701 678339764 0.000000e+00 1144.0
14 TraesCS5D01G513700 chr5B 95.763 708 25 5 3628 4332 678339614 678338909 0.000000e+00 1136.0
15 TraesCS5D01G513700 chr5B 85.385 1170 80 38 476 1589 678342810 678341676 0.000000e+00 1129.0
16 TraesCS5D01G513700 chr5B 90.300 866 63 14 1601 2456 678341710 678340856 0.000000e+00 1114.0
17 TraesCS5D01G513700 chr5B 84.165 581 74 15 2894 3467 678440025 678439456 8.190000e-152 547.0
18 TraesCS5D01G513700 chr5B 85.517 435 44 5 1601 2027 505281418 505280995 1.850000e-118 436.0
19 TraesCS5D01G513700 chr5B 88.387 155 15 2 2496 2649 678340851 678340699 2.660000e-42 183.0
20 TraesCS5D01G513700 chr7D 87.356 435 36 5 1601 2027 155438383 155437960 8.430000e-132 481.0
21 TraesCS5D01G513700 chr6A 86.437 435 40 5 1601 2027 47993917 47993494 3.950000e-125 459.0
22 TraesCS5D01G513700 chr6A 100.000 29 0 0 201 229 216072632 216072660 2.000000e-03 54.7
23 TraesCS5D01G513700 chr7B 85.747 435 43 6 1601 2027 611738426 611738003 3.980000e-120 442.0
24 TraesCS5D01G513700 chr7B 94.286 70 1 1 2648 2714 145742035 145742104 2.130000e-18 104.0
25 TraesCS5D01G513700 chr3B 85.747 435 43 5 1601 2027 739880741 739880318 3.980000e-120 442.0
26 TraesCS5D01G513700 chr3B 92.000 75 2 3 2628 2701 363536782 363536711 7.660000e-18 102.0
27 TraesCS5D01G513700 chr1B 85.287 435 45 5 1601 2027 650784384 650783961 8.610000e-117 431.0
28 TraesCS5D01G513700 chr2D 96.970 66 1 1 2637 2701 257442994 257443059 4.580000e-20 110.0
29 TraesCS5D01G513700 chr1D 98.361 61 1 0 2643 2703 44666261 44666201 1.650000e-19 108.0
30 TraesCS5D01G513700 chr1D 98.361 61 1 0 2643 2703 44694256 44694196 1.650000e-19 108.0
31 TraesCS5D01G513700 chr6D 95.455 66 3 0 2638 2703 95896106 95896041 5.920000e-19 106.0
32 TraesCS5D01G513700 chr2B 94.286 70 1 1 2648 2714 338749612 338749681 2.130000e-18 104.0
33 TraesCS5D01G513700 chr6B 91.892 74 4 2 2630 2703 479843613 479843542 7.660000e-18 102.0
34 TraesCS5D01G513700 chr3D 91.892 74 5 1 2629 2701 614251238 614251165 7.660000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G513700 chr5D 537675005 537679336 4331 True 8000.000000 8000 100.000000 1 4332 1 chr5D.!!$R1 4331
1 TraesCS5D01G513700 chr5D 537737502 537738036 534 True 499.000000 499 83.799000 2897 3424 1 chr5D.!!$R2 527
2 TraesCS5D01G513700 chr4A 631924393 631928415 4022 True 637.914286 1201 91.076571 553 4332 7 chr4A.!!$R1 3779
3 TraesCS5D01G513700 chr4A 631940101 631942212 2111 True 269.000000 379 87.146500 2928 3463 2 chr4A.!!$R2 535
4 TraesCS5D01G513700 chr5B 678338909 678342810 3901 True 941.200000 1144 89.805400 476 4332 5 chr5B.!!$R3 3856
5 TraesCS5D01G513700 chr5B 678439456 678440025 569 True 547.000000 547 84.165000 2894 3467 1 chr5B.!!$R2 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 410 0.034186 GGGTGCCATTGACCTGATGA 60.034 55.0 0.00 0.0 33.58 2.92 F
535 536 0.106419 TTGGGTCTCACGGCCTTTTT 60.106 50.0 0.00 0.0 0.00 1.94 F
1867 2025 0.108186 GGGCCCTTTGCTACATTTGC 60.108 55.0 17.04 0.0 40.92 3.68 F
2657 2921 0.105039 GCTGAATGGTACTCCCTCCG 59.895 60.0 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2372 0.179062 GCAGATGAGGCCACTACAGG 60.179 60.000 5.01 0.0 0.0 4.00 R
2209 2373 0.829333 AGCAGATGAGGCCACTACAG 59.171 55.000 5.01 0.0 0.0 2.74 R
2701 2965 0.706433 ACCCTGTTACTCCCTCCGTA 59.294 55.000 0.00 0.0 0.0 4.02 R
4187 6243 1.062587 CATCCGTGGAATTGTTCGCTC 59.937 52.381 0.00 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.645059 TTGAAAGTCAAACATGTTTACATTTGA 57.355 25.926 22.87 13.21 32.71 2.69
29 30 9.081997 TGAAAGTCAAACATGTTTACATTTGAC 57.918 29.630 22.87 22.70 45.39 3.18
30 31 8.419076 AAAGTCAAACATGTTTACATTTGACC 57.581 30.769 24.80 13.55 45.76 4.02
31 32 7.106439 AGTCAAACATGTTTACATTTGACCA 57.894 32.000 24.80 0.21 45.76 4.02
32 33 7.551585 AGTCAAACATGTTTACATTTGACCAA 58.448 30.769 24.80 0.00 45.76 3.67
33 34 8.037758 AGTCAAACATGTTTACATTTGACCAAA 58.962 29.630 24.80 0.00 45.76 3.28
34 35 8.660373 GTCAAACATGTTTACATTTGACCAAAA 58.340 29.630 22.87 0.00 42.50 2.44
35 36 9.388506 TCAAACATGTTTACATTTGACCAAAAT 57.611 25.926 22.87 0.00 39.13 1.82
75 76 7.525688 ACAGTCATTACACAAATCAGTATCG 57.474 36.000 0.00 0.00 0.00 2.92
76 77 7.097192 ACAGTCATTACACAAATCAGTATCGT 58.903 34.615 0.00 0.00 0.00 3.73
77 78 7.602644 ACAGTCATTACACAAATCAGTATCGTT 59.397 33.333 0.00 0.00 0.00 3.85
78 79 9.083080 CAGTCATTACACAAATCAGTATCGTTA 57.917 33.333 0.00 0.00 0.00 3.18
79 80 9.302345 AGTCATTACACAAATCAGTATCGTTAG 57.698 33.333 0.00 0.00 0.00 2.34
80 81 9.297586 GTCATTACACAAATCAGTATCGTTAGA 57.702 33.333 0.00 0.00 0.00 2.10
84 85 9.863845 TTACACAAATCAGTATCGTTAGATTCA 57.136 29.630 0.00 0.00 38.26 2.57
85 86 8.948631 ACACAAATCAGTATCGTTAGATTCAT 57.051 30.769 0.00 0.00 38.26 2.57
86 87 8.820933 ACACAAATCAGTATCGTTAGATTCATG 58.179 33.333 0.00 0.00 38.26 3.07
87 88 9.034544 CACAAATCAGTATCGTTAGATTCATGA 57.965 33.333 0.00 0.00 38.26 3.07
88 89 9.770097 ACAAATCAGTATCGTTAGATTCATGAT 57.230 29.630 0.00 0.00 38.26 2.45
90 91 9.987272 AAATCAGTATCGTTAGATTCATGATGA 57.013 29.630 0.00 0.00 38.26 2.92
91 92 9.987272 AATCAGTATCGTTAGATTCATGATGAA 57.013 29.630 10.65 10.65 41.09 2.57
92 93 9.636879 ATCAGTATCGTTAGATTCATGATGAAG 57.363 33.333 13.79 0.00 40.05 3.02
93 94 8.633561 TCAGTATCGTTAGATTCATGATGAAGT 58.366 33.333 13.79 6.09 40.05 3.01
94 95 9.899226 CAGTATCGTTAGATTCATGATGAAGTA 57.101 33.333 13.79 5.15 40.05 2.24
95 96 9.900710 AGTATCGTTAGATTCATGATGAAGTAC 57.099 33.333 13.79 7.65 40.05 2.73
96 97 9.678941 GTATCGTTAGATTCATGATGAAGTACA 57.321 33.333 13.79 0.00 40.05 2.90
97 98 7.987268 TCGTTAGATTCATGATGAAGTACAC 57.013 36.000 13.79 7.05 40.05 2.90
98 99 7.772166 TCGTTAGATTCATGATGAAGTACACT 58.228 34.615 13.79 9.51 40.05 3.55
99 100 8.251026 TCGTTAGATTCATGATGAAGTACACTT 58.749 33.333 13.79 0.00 40.05 3.16
100 101 8.873830 CGTTAGATTCATGATGAAGTACACTTT 58.126 33.333 13.79 0.00 40.05 2.66
170 171 5.927281 AAATAAACTAGGCTAGACACGGA 57.073 39.130 27.59 7.09 0.00 4.69
171 172 4.915158 ATAAACTAGGCTAGACACGGAC 57.085 45.455 27.59 0.00 0.00 4.79
172 173 2.211250 AACTAGGCTAGACACGGACA 57.789 50.000 27.59 0.00 0.00 4.02
173 174 2.438800 ACTAGGCTAGACACGGACAT 57.561 50.000 27.59 0.00 0.00 3.06
174 175 2.025155 ACTAGGCTAGACACGGACATG 58.975 52.381 27.59 0.00 0.00 3.21
175 176 2.025155 CTAGGCTAGACACGGACATGT 58.975 52.381 16.70 0.00 34.78 3.21
176 177 1.267121 AGGCTAGACACGGACATGTT 58.733 50.000 0.00 0.00 31.24 2.71
177 178 1.623811 AGGCTAGACACGGACATGTTT 59.376 47.619 0.00 0.00 31.24 2.83
178 179 1.732259 GGCTAGACACGGACATGTTTG 59.268 52.381 0.00 0.36 31.24 2.93
179 180 2.611971 GGCTAGACACGGACATGTTTGA 60.612 50.000 0.00 0.00 31.24 2.69
180 181 2.412089 GCTAGACACGGACATGTTTGAC 59.588 50.000 0.00 0.00 31.24 3.18
181 182 1.878953 AGACACGGACATGTTTGACC 58.121 50.000 0.00 0.00 34.75 4.02
182 183 1.416401 AGACACGGACATGTTTGACCT 59.584 47.619 0.00 0.00 35.78 3.85
183 184 2.158813 AGACACGGACATGTTTGACCTT 60.159 45.455 0.00 0.00 35.78 3.50
184 185 2.616842 GACACGGACATGTTTGACCTTT 59.383 45.455 0.00 0.00 35.78 3.11
185 186 2.357637 ACACGGACATGTTTGACCTTTG 59.642 45.455 0.00 0.00 35.78 2.77
186 187 2.616376 CACGGACATGTTTGACCTTTGA 59.384 45.455 0.00 0.00 35.78 2.69
187 188 3.066064 CACGGACATGTTTGACCTTTGAA 59.934 43.478 0.00 0.00 35.78 2.69
188 189 3.315191 ACGGACATGTTTGACCTTTGAAG 59.685 43.478 0.00 0.00 35.78 3.02
189 190 3.563808 CGGACATGTTTGACCTTTGAAGA 59.436 43.478 0.00 0.00 35.78 2.87
190 191 4.036262 CGGACATGTTTGACCTTTGAAGAA 59.964 41.667 0.00 0.00 35.78 2.52
191 192 5.449862 CGGACATGTTTGACCTTTGAAGAAA 60.450 40.000 0.00 0.00 35.78 2.52
192 193 6.337356 GGACATGTTTGACCTTTGAAGAAAA 58.663 36.000 0.00 0.00 35.17 2.29
193 194 6.816140 GGACATGTTTGACCTTTGAAGAAAAA 59.184 34.615 0.00 0.00 35.17 1.94
216 217 6.528537 AAAAAGCATGCACTACATTATGGA 57.471 33.333 21.98 0.00 36.64 3.41
217 218 6.528537 AAAAGCATGCACTACATTATGGAA 57.471 33.333 21.98 0.00 36.64 3.53
218 219 5.505173 AAGCATGCACTACATTATGGAAC 57.495 39.130 21.98 0.00 36.64 3.62
219 220 4.525996 AGCATGCACTACATTATGGAACA 58.474 39.130 21.98 0.00 39.50 3.18
220 221 5.135383 AGCATGCACTACATTATGGAACAT 58.865 37.500 21.98 0.00 39.67 2.71
221 222 6.298361 AGCATGCACTACATTATGGAACATA 58.702 36.000 21.98 0.00 39.67 2.29
222 223 6.429078 AGCATGCACTACATTATGGAACATAG 59.571 38.462 21.98 0.00 39.67 2.23
223 224 6.348786 GCATGCACTACATTATGGAACATAGG 60.349 42.308 14.21 0.00 39.67 2.57
224 225 6.936335 CATGCACTACATTATGGAACATAGGA 59.064 38.462 0.00 0.00 39.67 2.94
225 226 7.445096 CATGCACTACATTATGGAACATAGGAA 59.555 37.037 0.00 0.00 39.67 3.36
226 227 7.663081 ATGCACTACATTATGGAACATAGGAAG 59.337 37.037 0.00 0.00 38.77 3.46
263 264 7.397892 TTTGTTGACAAGTCTAATGAAACCA 57.602 32.000 1.53 0.00 37.15 3.67
264 265 7.397892 TTGTTGACAAGTCTAATGAAACCAA 57.602 32.000 1.53 0.00 0.00 3.67
265 266 7.581213 TGTTGACAAGTCTAATGAAACCAAT 57.419 32.000 1.53 0.00 0.00 3.16
266 267 8.006298 TGTTGACAAGTCTAATGAAACCAATT 57.994 30.769 1.53 0.00 0.00 2.32
267 268 8.474025 TGTTGACAAGTCTAATGAAACCAATTT 58.526 29.630 1.53 0.00 0.00 1.82
268 269 8.755018 GTTGACAAGTCTAATGAAACCAATTTG 58.245 33.333 1.53 0.00 0.00 2.32
269 270 8.231692 TGACAAGTCTAATGAAACCAATTTGA 57.768 30.769 0.00 0.00 0.00 2.69
270 271 8.859090 TGACAAGTCTAATGAAACCAATTTGAT 58.141 29.630 0.00 0.00 0.00 2.57
271 272 9.132521 GACAAGTCTAATGAAACCAATTTGATG 57.867 33.333 0.00 0.00 0.00 3.07
272 273 8.859090 ACAAGTCTAATGAAACCAATTTGATGA 58.141 29.630 0.00 0.00 0.00 2.92
273 274 9.865321 CAAGTCTAATGAAACCAATTTGATGAT 57.135 29.630 0.00 0.00 0.00 2.45
275 276 9.471702 AGTCTAATGAAACCAATTTGATGATCT 57.528 29.630 0.00 0.00 0.00 2.75
281 282 8.812513 TGAAACCAATTTGATGATCTAGATGT 57.187 30.769 10.74 0.00 0.00 3.06
282 283 9.246670 TGAAACCAATTTGATGATCTAGATGTT 57.753 29.630 10.74 1.04 0.00 2.71
283 284 9.512435 GAAACCAATTTGATGATCTAGATGTTG 57.488 33.333 10.74 3.94 0.00 3.33
284 285 7.578310 ACCAATTTGATGATCTAGATGTTGG 57.422 36.000 10.74 13.43 38.58 3.77
285 286 7.121382 ACCAATTTGATGATCTAGATGTTGGT 58.879 34.615 10.74 13.97 40.34 3.67
286 287 8.274322 ACCAATTTGATGATCTAGATGTTGGTA 58.726 33.333 10.74 0.00 42.52 3.25
287 288 9.293404 CCAATTTGATGATCTAGATGTTGGTAT 57.707 33.333 10.74 0.00 0.00 2.73
321 322 9.686683 ACCAACTTGTTTCAGCTTATAGATATT 57.313 29.630 0.00 0.00 0.00 1.28
347 348 8.183830 TGATTTAATTTGATCAACGATTTGCC 57.816 30.769 7.89 0.00 32.17 4.52
348 349 6.624710 TTTAATTTGATCAACGATTTGCCG 57.375 33.333 7.89 0.00 32.17 5.69
349 350 2.627863 TTTGATCAACGATTTGCCGG 57.372 45.000 7.89 0.00 32.17 6.13
350 351 1.529226 TTGATCAACGATTTGCCGGT 58.471 45.000 3.38 0.00 32.17 5.28
354 355 3.263941 AACGATTTGCCGGTGAGC 58.736 55.556 1.90 0.00 0.00 4.26
355 356 2.332654 AACGATTTGCCGGTGAGCC 61.333 57.895 1.90 0.00 0.00 4.70
356 357 2.745884 CGATTTGCCGGTGAGCCA 60.746 61.111 1.90 0.00 34.09 4.75
357 358 2.753966 CGATTTGCCGGTGAGCCAG 61.754 63.158 1.90 0.00 34.09 4.85
358 359 1.377202 GATTTGCCGGTGAGCCAGA 60.377 57.895 1.90 0.00 34.09 3.86
359 360 1.372087 GATTTGCCGGTGAGCCAGAG 61.372 60.000 1.90 0.00 34.09 3.35
360 361 1.841302 ATTTGCCGGTGAGCCAGAGA 61.841 55.000 1.90 0.00 34.09 3.10
361 362 2.454832 TTTGCCGGTGAGCCAGAGAG 62.455 60.000 1.90 0.00 34.09 3.20
362 363 4.154347 GCCGGTGAGCCAGAGAGG 62.154 72.222 1.90 0.00 41.84 3.69
363 364 3.465403 CCGGTGAGCCAGAGAGGG 61.465 72.222 0.00 0.00 38.09 4.30
364 365 3.465403 CGGTGAGCCAGAGAGGGG 61.465 72.222 0.00 0.00 38.09 4.79
365 366 2.284995 GGTGAGCCAGAGAGGGGT 60.285 66.667 0.00 0.00 42.44 4.95
366 367 2.664081 GGTGAGCCAGAGAGGGGTG 61.664 68.421 0.00 0.00 39.15 4.61
367 368 3.005539 TGAGCCAGAGAGGGGTGC 61.006 66.667 0.00 0.00 39.15 5.01
368 369 2.686835 GAGCCAGAGAGGGGTGCT 60.687 66.667 0.00 0.00 39.15 4.40
369 370 2.686835 AGCCAGAGAGGGGTGCTC 60.687 66.667 0.00 0.00 37.25 4.26
370 371 3.005539 GCCAGAGAGGGGTGCTCA 61.006 66.667 0.00 0.00 38.09 4.26
371 372 2.373707 GCCAGAGAGGGGTGCTCAT 61.374 63.158 0.00 0.00 38.09 2.90
372 373 1.050988 GCCAGAGAGGGGTGCTCATA 61.051 60.000 0.00 0.00 38.09 2.15
373 374 1.047002 CCAGAGAGGGGTGCTCATAG 58.953 60.000 0.00 0.00 34.85 2.23
374 375 1.047002 CAGAGAGGGGTGCTCATAGG 58.953 60.000 0.00 0.00 34.85 2.57
375 376 0.937441 AGAGAGGGGTGCTCATAGGA 59.063 55.000 0.00 0.00 34.85 2.94
376 377 1.292242 AGAGAGGGGTGCTCATAGGAA 59.708 52.381 0.00 0.00 34.85 3.36
377 378 2.090267 AGAGAGGGGTGCTCATAGGAAT 60.090 50.000 0.00 0.00 34.85 3.01
378 379 3.142977 AGAGAGGGGTGCTCATAGGAATA 59.857 47.826 0.00 0.00 34.85 1.75
379 380 3.243724 AGAGGGGTGCTCATAGGAATAC 58.756 50.000 0.00 0.00 0.00 1.89
380 381 1.971357 AGGGGTGCTCATAGGAATACG 59.029 52.381 0.00 0.00 0.00 3.06
381 382 1.002087 GGGGTGCTCATAGGAATACGG 59.998 57.143 0.00 0.00 0.00 4.02
382 383 1.692519 GGGTGCTCATAGGAATACGGT 59.307 52.381 0.00 0.00 0.00 4.83
383 384 2.548067 GGGTGCTCATAGGAATACGGTG 60.548 54.545 0.00 0.00 0.00 4.94
384 385 2.135933 GTGCTCATAGGAATACGGTGC 58.864 52.381 0.00 0.00 0.00 5.01
385 386 1.269569 TGCTCATAGGAATACGGTGCG 60.270 52.381 0.00 0.00 0.00 5.34
386 387 1.419374 CTCATAGGAATACGGTGCGC 58.581 55.000 0.00 0.00 0.00 6.09
387 388 0.318360 TCATAGGAATACGGTGCGCG 60.318 55.000 0.00 0.00 0.00 6.86
388 389 1.663702 ATAGGAATACGGTGCGCGC 60.664 57.895 27.26 27.26 0.00 6.86
404 405 4.740822 GCGGGGTGCCATTGACCT 62.741 66.667 0.00 0.00 37.76 3.85
405 406 2.751436 CGGGGTGCCATTGACCTG 60.751 66.667 0.00 0.00 33.58 4.00
406 407 2.763215 GGGGTGCCATTGACCTGA 59.237 61.111 0.00 0.00 33.58 3.86
407 408 1.307647 GGGGTGCCATTGACCTGAT 59.692 57.895 0.00 0.00 33.58 2.90
408 409 1.039233 GGGGTGCCATTGACCTGATG 61.039 60.000 0.00 0.00 33.58 3.07
409 410 0.034186 GGGTGCCATTGACCTGATGA 60.034 55.000 0.00 0.00 33.58 2.92
410 411 1.616725 GGGTGCCATTGACCTGATGAA 60.617 52.381 0.00 0.00 33.58 2.57
411 412 2.170166 GGTGCCATTGACCTGATGAAA 58.830 47.619 0.00 0.00 0.00 2.69
412 413 2.762327 GGTGCCATTGACCTGATGAAAT 59.238 45.455 0.00 0.00 0.00 2.17
413 414 3.196254 GGTGCCATTGACCTGATGAAATT 59.804 43.478 0.00 0.00 0.00 1.82
414 415 4.178540 GTGCCATTGACCTGATGAAATTG 58.821 43.478 0.00 0.00 0.00 2.32
415 416 3.196039 TGCCATTGACCTGATGAAATTGG 59.804 43.478 0.00 0.00 0.00 3.16
416 417 3.788937 CCATTGACCTGATGAAATTGGC 58.211 45.455 0.00 0.00 0.00 4.52
417 418 3.196039 CCATTGACCTGATGAAATTGGCA 59.804 43.478 0.00 0.00 0.00 4.92
418 419 3.940209 TTGACCTGATGAAATTGGCAC 57.060 42.857 0.00 0.00 0.00 5.01
419 420 1.811965 TGACCTGATGAAATTGGCACG 59.188 47.619 0.00 0.00 0.00 5.34
420 421 1.812571 GACCTGATGAAATTGGCACGT 59.187 47.619 0.00 0.00 0.00 4.49
421 422 2.228822 GACCTGATGAAATTGGCACGTT 59.771 45.455 0.00 0.00 0.00 3.99
422 423 2.627699 ACCTGATGAAATTGGCACGTTT 59.372 40.909 0.00 0.00 0.00 3.60
423 424 2.988493 CCTGATGAAATTGGCACGTTTG 59.012 45.455 2.14 0.00 0.00 2.93
434 435 2.939460 GCACGTTTGCCAATAGGATT 57.061 45.000 0.00 0.00 43.66 3.01
435 436 2.529151 GCACGTTTGCCAATAGGATTG 58.471 47.619 0.00 0.00 43.66 2.67
436 437 2.094752 GCACGTTTGCCAATAGGATTGT 60.095 45.455 0.00 0.00 43.66 2.71
437 438 3.127895 GCACGTTTGCCAATAGGATTGTA 59.872 43.478 0.00 0.00 43.66 2.41
438 439 4.380023 GCACGTTTGCCAATAGGATTGTAA 60.380 41.667 0.00 0.00 43.66 2.41
439 440 5.678616 GCACGTTTGCCAATAGGATTGTAAT 60.679 40.000 0.00 0.00 43.66 1.89
440 441 5.743398 CACGTTTGCCAATAGGATTGTAATG 59.257 40.000 0.00 0.00 36.89 1.90
441 442 5.163561 ACGTTTGCCAATAGGATTGTAATGG 60.164 40.000 0.00 0.00 36.89 3.16
442 443 5.163561 CGTTTGCCAATAGGATTGTAATGGT 60.164 40.000 0.00 0.00 36.89 3.55
443 444 6.273071 GTTTGCCAATAGGATTGTAATGGTC 58.727 40.000 0.00 0.00 36.89 4.02
444 445 5.387113 TGCCAATAGGATTGTAATGGTCT 57.613 39.130 0.00 0.00 36.89 3.85
445 446 5.376625 TGCCAATAGGATTGTAATGGTCTC 58.623 41.667 0.00 0.00 36.89 3.36
446 447 4.762251 GCCAATAGGATTGTAATGGTCTCC 59.238 45.833 0.00 0.00 36.89 3.71
447 448 4.997395 CCAATAGGATTGTAATGGTCTCCG 59.003 45.833 0.00 0.00 36.89 4.63
448 449 5.454755 CCAATAGGATTGTAATGGTCTCCGT 60.455 44.000 0.00 0.00 36.89 4.69
449 450 5.888982 ATAGGATTGTAATGGTCTCCGTT 57.111 39.130 0.00 0.00 36.61 4.44
450 451 3.873910 AGGATTGTAATGGTCTCCGTTG 58.126 45.455 3.79 0.00 34.27 4.10
451 452 3.517901 AGGATTGTAATGGTCTCCGTTGA 59.482 43.478 3.79 0.00 34.27 3.18
452 453 4.164221 AGGATTGTAATGGTCTCCGTTGAT 59.836 41.667 3.79 0.00 34.27 2.57
453 454 4.881850 GGATTGTAATGGTCTCCGTTGATT 59.118 41.667 3.79 0.00 34.27 2.57
454 455 6.053005 GGATTGTAATGGTCTCCGTTGATTA 58.947 40.000 3.79 0.00 34.27 1.75
455 456 6.540914 GGATTGTAATGGTCTCCGTTGATTAA 59.459 38.462 3.79 0.00 34.27 1.40
456 457 6.730960 TTGTAATGGTCTCCGTTGATTAAC 57.269 37.500 3.79 0.00 34.27 2.01
457 458 5.795972 TGTAATGGTCTCCGTTGATTAACA 58.204 37.500 0.95 0.00 36.58 2.41
458 459 5.640357 TGTAATGGTCTCCGTTGATTAACAC 59.360 40.000 0.95 0.00 36.58 3.32
459 460 3.755112 TGGTCTCCGTTGATTAACACA 57.245 42.857 0.95 0.00 36.58 3.72
460 461 4.074627 TGGTCTCCGTTGATTAACACAA 57.925 40.909 0.95 0.00 36.58 3.33
461 462 4.647611 TGGTCTCCGTTGATTAACACAAT 58.352 39.130 0.95 0.00 36.58 2.71
462 463 4.693566 TGGTCTCCGTTGATTAACACAATC 59.306 41.667 0.95 0.00 36.58 2.67
463 464 4.935808 GGTCTCCGTTGATTAACACAATCT 59.064 41.667 0.95 0.00 36.58 2.40
464 465 5.411669 GGTCTCCGTTGATTAACACAATCTT 59.588 40.000 0.95 0.00 36.58 2.40
465 466 6.072673 GGTCTCCGTTGATTAACACAATCTTT 60.073 38.462 0.95 0.00 36.58 2.52
466 467 7.360361 GTCTCCGTTGATTAACACAATCTTTT 58.640 34.615 0.95 0.00 36.58 2.27
467 468 7.534239 GTCTCCGTTGATTAACACAATCTTTTC 59.466 37.037 0.95 0.00 36.58 2.29
468 469 7.444183 TCTCCGTTGATTAACACAATCTTTTCT 59.556 33.333 0.95 0.00 36.58 2.52
469 470 8.610248 TCCGTTGATTAACACAATCTTTTCTA 57.390 30.769 0.95 0.00 36.58 2.10
470 471 9.226606 TCCGTTGATTAACACAATCTTTTCTAT 57.773 29.630 0.95 0.00 36.58 1.98
471 472 9.840427 CCGTTGATTAACACAATCTTTTCTATT 57.160 29.630 0.95 0.00 36.58 1.73
474 475 9.554724 TTGATTAACACAATCTTTTCTATTCGC 57.445 29.630 0.00 0.00 0.00 4.70
475 476 8.726068 TGATTAACACAATCTTTTCTATTCGCA 58.274 29.630 0.00 0.00 0.00 5.10
476 477 9.554724 GATTAACACAATCTTTTCTATTCGCAA 57.445 29.630 0.00 0.00 0.00 4.85
477 478 9.906660 ATTAACACAATCTTTTCTATTCGCAAA 57.093 25.926 0.00 0.00 0.00 3.68
478 479 7.858052 AACACAATCTTTTCTATTCGCAAAG 57.142 32.000 0.00 0.00 0.00 2.77
479 480 7.202016 ACACAATCTTTTCTATTCGCAAAGA 57.798 32.000 0.00 0.00 38.81 2.52
480 481 7.648142 ACACAATCTTTTCTATTCGCAAAGAA 58.352 30.769 0.00 0.00 38.16 2.52
484 485 6.312399 TCTTTTCTATTCGCAAAGAAAGCA 57.688 33.333 6.18 0.00 41.40 3.91
513 514 4.528206 TGCTTAGACAGAAAGGATGACTGA 59.472 41.667 0.00 0.00 35.85 3.41
530 531 1.153349 GATCTTGGGTCTCACGGCC 60.153 63.158 0.00 0.00 0.00 6.13
535 536 0.106419 TTGGGTCTCACGGCCTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
629 642 1.069765 CCGATCCCATCCCACGAAG 59.930 63.158 0.00 0.00 0.00 3.79
665 678 3.822192 CGGCTCATCCCACGTCGA 61.822 66.667 0.00 0.00 0.00 4.20
666 679 2.577059 GGCTCATCCCACGTCGAA 59.423 61.111 0.00 0.00 0.00 3.71
668 681 0.462047 GGCTCATCCCACGTCGAAAT 60.462 55.000 0.00 0.00 0.00 2.17
669 682 0.931005 GCTCATCCCACGTCGAAATC 59.069 55.000 0.00 0.00 0.00 2.17
670 683 1.200483 CTCATCCCACGTCGAAATCG 58.800 55.000 0.00 0.00 41.45 3.34
726 745 4.796231 GATGCACGCGACCGACCT 62.796 66.667 15.93 0.00 38.29 3.85
732 776 4.527157 CGCGACCGACCTACCGAC 62.527 72.222 0.00 0.00 36.29 4.79
733 777 4.527157 GCGACCGACCTACCGACG 62.527 72.222 0.00 0.00 34.49 5.12
737 781 3.818787 CCGACCTACCGACGGTGG 61.819 72.222 29.55 25.88 41.47 4.61
788 865 1.705450 CCCTCCCTCCCCCTCTCTA 60.705 68.421 0.00 0.00 0.00 2.43
790 867 0.411848 CCTCCCTCCCCCTCTCTATC 59.588 65.000 0.00 0.00 0.00 2.08
791 868 0.411848 CTCCCTCCCCCTCTCTATCC 59.588 65.000 0.00 0.00 0.00 2.59
793 870 1.083363 CCCTCCCCCTCTCTATCCCT 61.083 65.000 0.00 0.00 0.00 4.20
846 923 4.074647 GGCGCGGCCCTATTTATT 57.925 55.556 23.89 0.00 44.06 1.40
1029 1113 0.464373 CCAAGGGTGAGCATACGCAT 60.464 55.000 9.46 0.00 42.27 4.73
1160 1244 3.498397 CGTGCTTGCTTTCCTTCTTCTTA 59.502 43.478 0.00 0.00 0.00 2.10
1291 1382 1.403679 TGTGGCTGTTTTGTTTCGGAG 59.596 47.619 0.00 0.00 0.00 4.63
1292 1383 1.028905 TGGCTGTTTTGTTTCGGAGG 58.971 50.000 0.00 0.00 0.00 4.30
1293 1384 1.314730 GGCTGTTTTGTTTCGGAGGA 58.685 50.000 0.00 0.00 0.00 3.71
1312 1403 1.336632 ATGGGTCCTCTGCTCTGCTC 61.337 60.000 0.00 0.00 0.00 4.26
1337 1470 5.576447 ACCGATAACATAAAAGGCAAAGG 57.424 39.130 0.00 0.00 0.00 3.11
1340 1473 5.036737 CGATAACATAAAAGGCAAAGGCAG 58.963 41.667 0.00 0.00 43.71 4.85
1341 1474 3.683365 AACATAAAAGGCAAAGGCAGG 57.317 42.857 0.00 0.00 43.71 4.85
1380 1513 5.998363 ACATCTGGGAAGTCTGTTAGTTTTC 59.002 40.000 0.00 0.00 0.00 2.29
1389 1522 5.552178 AGTCTGTTAGTTTTCCCATCTGTC 58.448 41.667 0.00 0.00 0.00 3.51
1426 1573 3.484407 ACCGTACGCCTGTAGATAGATT 58.516 45.455 10.49 0.00 0.00 2.40
1436 1583 5.537188 CCTGTAGATAGATTGCCAGTTCTC 58.463 45.833 0.00 0.00 0.00 2.87
1450 1597 4.734917 CCAGTTCTCTACTCTGGTTAACG 58.265 47.826 0.00 0.00 42.42 3.18
1479 1626 2.432456 TGCTCCGATCACACGCAC 60.432 61.111 0.00 0.00 0.00 5.34
1494 1641 1.376553 GCACTCACTCCTCCAAGGC 60.377 63.158 0.00 0.00 34.61 4.35
1497 1644 0.413832 ACTCACTCCTCCAAGGCCTA 59.586 55.000 5.16 0.00 34.61 3.93
1529 1676 3.630312 TGCTTACAACCTTCCAAGTTCAC 59.370 43.478 0.00 0.00 0.00 3.18
1535 1682 1.758592 CTTCCAAGTTCACGGGGGA 59.241 57.895 0.00 0.00 0.00 4.81
1543 1690 1.003233 AGTTCACGGGGGATCTTGTTC 59.997 52.381 0.00 0.00 0.00 3.18
1544 1691 1.060729 TTCACGGGGGATCTTGTTCA 58.939 50.000 0.00 0.00 0.00 3.18
1554 1701 4.990426 GGGGATCTTGTTCATTTGTTTGTG 59.010 41.667 0.00 0.00 0.00 3.33
1556 1703 5.691754 GGGATCTTGTTCATTTGTTTGTGTC 59.308 40.000 0.00 0.00 0.00 3.67
1557 1704 6.272318 GGATCTTGTTCATTTGTTTGTGTCA 58.728 36.000 0.00 0.00 0.00 3.58
1559 1706 8.081633 GGATCTTGTTCATTTGTTTGTGTCATA 58.918 33.333 0.00 0.00 0.00 2.15
1560 1707 9.462174 GATCTTGTTCATTTGTTTGTGTCATAA 57.538 29.630 0.00 0.00 0.00 1.90
1564 1711 9.814899 TTGTTCATTTGTTTGTGTCATAATTCT 57.185 25.926 0.00 0.00 0.00 2.40
1567 1714 8.296799 TCATTTGTTTGTGTCATAATTCTTGC 57.703 30.769 0.00 0.00 0.00 4.01
1569 1716 7.462109 TTTGTTTGTGTCATAATTCTTGCAC 57.538 32.000 0.00 0.00 0.00 4.57
1570 1717 6.141560 TGTTTGTGTCATAATTCTTGCACA 57.858 33.333 11.17 11.17 35.43 4.57
1571 1718 5.976534 TGTTTGTGTCATAATTCTTGCACAC 59.023 36.000 13.20 12.68 36.71 3.82
1572 1719 5.764487 TTGTGTCATAATTCTTGCACACA 57.236 34.783 15.04 15.04 41.72 3.72
1573 1720 5.963176 TGTGTCATAATTCTTGCACACAT 57.037 34.783 15.04 0.00 39.28 3.21
1575 1722 6.747125 TGTGTCATAATTCTTGCACACATTT 58.253 32.000 15.04 0.00 39.28 2.32
1576 1723 6.862608 TGTGTCATAATTCTTGCACACATTTC 59.137 34.615 15.04 0.00 39.28 2.17
1578 1725 7.543172 GTGTCATAATTCTTGCACACATTTCAT 59.457 33.333 0.00 0.00 35.31 2.57
1579 1726 8.738106 TGTCATAATTCTTGCACACATTTCATA 58.262 29.630 0.00 0.00 0.00 2.15
1580 1727 9.229784 GTCATAATTCTTGCACACATTTCATAG 57.770 33.333 0.00 0.00 0.00 2.23
1581 1728 8.959548 TCATAATTCTTGCACACATTTCATAGT 58.040 29.630 0.00 0.00 0.00 2.12
1582 1729 9.577110 CATAATTCTTGCACACATTTCATAGTT 57.423 29.630 0.00 0.00 0.00 2.24
1584 1731 8.524870 AATTCTTGCACACATTTCATAGTTTC 57.475 30.769 0.00 0.00 0.00 2.78
1585 1732 6.882610 TCTTGCACACATTTCATAGTTTCT 57.117 33.333 0.00 0.00 0.00 2.52
1586 1733 7.275888 TCTTGCACACATTTCATAGTTTCTT 57.724 32.000 0.00 0.00 0.00 2.52
1587 1734 7.362662 TCTTGCACACATTTCATAGTTTCTTC 58.637 34.615 0.00 0.00 0.00 2.87
1588 1735 6.882610 TGCACACATTTCATAGTTTCTTCT 57.117 33.333 0.00 0.00 0.00 2.85
1589 1736 7.977789 TGCACACATTTCATAGTTTCTTCTA 57.022 32.000 0.00 0.00 0.00 2.10
1590 1737 8.565896 TGCACACATTTCATAGTTTCTTCTAT 57.434 30.769 0.00 0.00 0.00 1.98
1591 1738 8.453320 TGCACACATTTCATAGTTTCTTCTATG 58.547 33.333 7.21 7.21 44.86 2.23
1592 1739 8.454106 GCACACATTTCATAGTTTCTTCTATGT 58.546 33.333 11.68 0.00 44.25 2.29
1593 1740 9.764870 CACACATTTCATAGTTTCTTCTATGTG 57.235 33.333 0.00 0.00 44.25 3.21
1594 1741 9.725019 ACACATTTCATAGTTTCTTCTATGTGA 57.275 29.630 15.71 4.77 44.25 3.58
1595 1742 9.979270 CACATTTCATAGTTTCTTCTATGTGAC 57.021 33.333 0.00 0.00 44.25 3.67
1596 1743 9.950496 ACATTTCATAGTTTCTTCTATGTGACT 57.050 29.630 11.68 0.00 44.25 3.41
1599 1746 8.777865 TTCATAGTTTCTTCTATGTGACTTGG 57.222 34.615 11.68 0.00 44.25 3.61
1600 1747 7.331026 TCATAGTTTCTTCTATGTGACTTGGG 58.669 38.462 11.68 0.00 44.25 4.12
1601 1748 5.568620 AGTTTCTTCTATGTGACTTGGGT 57.431 39.130 0.00 0.00 0.00 4.51
1602 1749 5.308825 AGTTTCTTCTATGTGACTTGGGTG 58.691 41.667 0.00 0.00 0.00 4.61
1603 1750 5.071788 AGTTTCTTCTATGTGACTTGGGTGA 59.928 40.000 0.00 0.00 0.00 4.02
1604 1751 5.762179 TTCTTCTATGTGACTTGGGTGAT 57.238 39.130 0.00 0.00 0.00 3.06
1605 1752 6.867519 TTCTTCTATGTGACTTGGGTGATA 57.132 37.500 0.00 0.00 0.00 2.15
1606 1753 6.867519 TCTTCTATGTGACTTGGGTGATAA 57.132 37.500 0.00 0.00 0.00 1.75
1607 1754 7.252612 TCTTCTATGTGACTTGGGTGATAAA 57.747 36.000 0.00 0.00 0.00 1.40
1608 1755 7.861629 TCTTCTATGTGACTTGGGTGATAAAT 58.138 34.615 0.00 0.00 0.00 1.40
1609 1756 8.328758 TCTTCTATGTGACTTGGGTGATAAATT 58.671 33.333 0.00 0.00 0.00 1.82
1617 1764 7.174253 GTGACTTGGGTGATAAATTCTTGTACA 59.826 37.037 0.00 0.00 0.00 2.90
1688 1836 1.270625 TGAAGTAACTTGGGTGCCTCG 60.271 52.381 0.00 0.00 0.00 4.63
1696 1844 0.693622 TTGGGTGCCTCGGTAATCAA 59.306 50.000 0.00 0.00 0.00 2.57
1703 1851 3.371285 GTGCCTCGGTAATCAACTTCTTC 59.629 47.826 0.00 0.00 0.00 2.87
1704 1852 2.937149 GCCTCGGTAATCAACTTCTTCC 59.063 50.000 0.00 0.00 0.00 3.46
1753 1901 1.134670 GGGACTATCGCAGTTGCTTCT 60.135 52.381 2.29 0.00 37.72 2.85
1762 1910 0.947244 CAGTTGCTTCTGCGTTTCCT 59.053 50.000 0.00 0.00 43.34 3.36
1783 1931 5.012328 CTGGTCATCAGGAAGGTACTAAC 57.988 47.826 0.00 0.00 37.53 2.34
1838 1996 1.607628 CTGCAAGGCAAGGCATATCTC 59.392 52.381 0.00 0.00 38.41 2.75
1867 2025 0.108186 GGGCCCTTTGCTACATTTGC 60.108 55.000 17.04 0.00 40.92 3.68
1907 2066 2.035576 AGCTGCTCAAAAGGCTTTCTTG 59.964 45.455 13.76 9.10 35.55 3.02
1975 2134 2.612212 TCACAAGTTCTTGTCGAAAGCC 59.388 45.455 14.22 0.00 32.41 4.35
2047 2206 1.358725 CGGTTGTCGTCCGCAATGAT 61.359 55.000 0.00 0.00 41.48 2.45
2062 2221 5.296780 CCGCAATGATGAAGTAATAGTTGGT 59.703 40.000 0.00 0.00 0.00 3.67
2134 2293 4.160626 GTCACTGCAATAAGAGAGGTAGGT 59.839 45.833 0.00 0.00 0.00 3.08
2144 2303 0.620556 AGAGGTAGGTTGCCATGTGG 59.379 55.000 0.00 0.00 38.53 4.17
2159 2318 4.461256 CCATGTGGACAGAGGTTATCCCT 61.461 52.174 0.00 0.00 42.10 4.20
2161 2320 4.069312 TGTGGACAGAGGTTATCCCTAA 57.931 45.455 0.00 0.00 46.51 2.69
2172 2331 7.014422 CAGAGGTTATCCCTAACAACTACTAGG 59.986 44.444 0.00 0.00 46.51 3.02
2173 2332 6.750009 AGGTTATCCCTAACAACTACTAGGT 58.250 40.000 0.00 0.00 43.87 3.08
2202 2366 6.862608 TGCTGTTTACATTTTGCTACTGAATG 59.137 34.615 0.00 0.00 36.95 2.67
2203 2367 6.863126 GCTGTTTACATTTTGCTACTGAATGT 59.137 34.615 6.26 6.26 43.93 2.71
2206 2370 9.593134 TGTTTACATTTTGCTACTGAATGTTTT 57.407 25.926 6.30 0.00 42.28 2.43
2209 2373 7.713764 ACATTTTGCTACTGAATGTTTTTCC 57.286 32.000 0.00 0.00 40.11 3.13
2213 2380 7.575414 TTTGCTACTGAATGTTTTTCCTGTA 57.425 32.000 0.00 0.00 0.00 2.74
2216 2383 6.204688 TGCTACTGAATGTTTTTCCTGTAGTG 59.795 38.462 0.00 0.00 32.37 2.74
2223 2390 3.181434 TGTTTTTCCTGTAGTGGCCTCAT 60.181 43.478 3.32 0.00 0.00 2.90
2245 2500 3.696548 TCTGCTGATATAGGCTGTATCCG 59.303 47.826 23.35 19.23 0.00 4.18
2279 2534 2.092103 TGCTTTTGGAACCAGTACCACT 60.092 45.455 0.00 0.00 35.81 4.00
2295 2550 6.372659 CAGTACCACTACATTCTTGCAGAATT 59.627 38.462 8.19 4.72 41.90 2.17
2320 2576 2.805671 TGTTATTTGTGCTCACCTGTCG 59.194 45.455 0.00 0.00 0.00 4.35
2326 2582 0.529773 GTGCTCACCTGTCGACACAA 60.530 55.000 15.76 0.00 29.82 3.33
2334 2590 2.288457 ACCTGTCGACACAACTGAGATG 60.288 50.000 15.76 0.26 29.82 2.90
2336 2592 1.071605 GTCGACACAACTGAGATGGC 58.928 55.000 11.55 0.00 0.00 4.40
2381 2639 9.559958 CCATTCTTGTACATCTTCATGTTTTAC 57.440 33.333 0.00 0.00 40.66 2.01
2397 2655 9.883142 TCATGTTTTACATTTTCAGTTTTCCTT 57.117 25.926 0.00 0.00 36.53 3.36
2444 2702 9.773328 ATTATCTTGTATCACGTTGTCAAATTG 57.227 29.630 0.00 0.00 0.00 2.32
2475 2733 7.438459 ACTTCAGTGTGACTACATAAAGTTGAC 59.562 37.037 0.00 0.00 39.39 3.18
2499 2757 8.991243 ACTGTTCAAGCGTGTTATATACTTTA 57.009 30.769 0.00 0.00 0.00 1.85
2540 2802 5.301551 AGTTCCATAGTGATGCAAACAAACA 59.698 36.000 0.00 0.00 33.16 2.83
2543 2805 5.301551 TCCATAGTGATGCAAACAAACACTT 59.698 36.000 0.00 0.00 41.42 3.16
2556 2818 4.215109 ACAAACACTTCCAGCCTAACAAT 58.785 39.130 0.00 0.00 0.00 2.71
2566 2830 6.478512 TCCAGCCTAACAATTGTTTCTTTT 57.521 33.333 27.66 6.29 39.31 2.27
2583 2847 9.260002 TGTTTCTTTTATTTTCATCAGAAAGGC 57.740 29.630 0.00 0.00 44.03 4.35
2649 2913 5.391312 AACATTTCCTTGCTGAATGGTAC 57.609 39.130 0.00 0.00 35.60 3.34
2650 2914 4.666512 ACATTTCCTTGCTGAATGGTACT 58.333 39.130 0.00 0.00 35.60 2.73
2651 2915 4.702131 ACATTTCCTTGCTGAATGGTACTC 59.298 41.667 0.00 0.00 35.60 2.59
2652 2916 3.350219 TTCCTTGCTGAATGGTACTCC 57.650 47.619 0.00 0.00 0.00 3.85
2653 2917 1.559682 TCCTTGCTGAATGGTACTCCC 59.440 52.381 0.00 0.00 0.00 4.30
2654 2918 1.561542 CCTTGCTGAATGGTACTCCCT 59.438 52.381 0.00 0.00 0.00 4.20
2655 2919 2.420687 CCTTGCTGAATGGTACTCCCTC 60.421 54.545 0.00 0.00 0.00 4.30
2656 2920 1.204146 TGCTGAATGGTACTCCCTCC 58.796 55.000 0.00 0.00 0.00 4.30
2657 2921 0.105039 GCTGAATGGTACTCCCTCCG 59.895 60.000 0.00 0.00 0.00 4.63
2658 2922 1.486211 CTGAATGGTACTCCCTCCGT 58.514 55.000 0.00 0.00 0.00 4.69
2659 2923 1.409427 CTGAATGGTACTCCCTCCGTC 59.591 57.143 0.00 0.00 0.00 4.79
2660 2924 0.751452 GAATGGTACTCCCTCCGTCC 59.249 60.000 0.00 0.00 0.00 4.79
2661 2925 0.690077 AATGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
2662 2926 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
2663 2927 1.305549 GGTACTCCCTCCGTCCCAA 60.306 63.158 0.00 0.00 0.00 4.12
2664 2928 0.906282 GGTACTCCCTCCGTCCCAAA 60.906 60.000 0.00 0.00 0.00 3.28
2665 2929 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2666 2930 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2667 2931 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2668 2932 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2669 2933 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2670 2934 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2671 2935 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2672 2936 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2673 2937 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2674 2938 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2675 2939 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2676 2940 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2677 2941 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2678 2942 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2679 2943 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2680 2944 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2681 2945 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2682 2946 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2683 2947 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2684 2948 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2685 2949 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2693 2957 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
2694 2958 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
2696 2960 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
2697 2961 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
2704 2968 9.622004 ATTTGTCTAAATACGGATGTATCTACG 57.378 33.333 0.00 0.00 40.42 3.51
2705 2969 7.137490 TGTCTAAATACGGATGTATCTACGG 57.863 40.000 0.00 0.00 40.42 4.02
2706 2970 6.936335 TGTCTAAATACGGATGTATCTACGGA 59.064 38.462 0.00 0.00 40.42 4.69
2707 2971 7.118825 TGTCTAAATACGGATGTATCTACGGAG 59.881 40.741 0.00 0.00 40.42 4.63
2708 2972 5.640189 AAATACGGATGTATCTACGGAGG 57.360 43.478 0.00 0.00 40.42 4.30
2709 2973 1.906990 ACGGATGTATCTACGGAGGG 58.093 55.000 0.00 0.00 0.00 4.30
2710 2974 1.422781 ACGGATGTATCTACGGAGGGA 59.577 52.381 0.00 0.00 0.00 4.20
2711 2975 2.085320 CGGATGTATCTACGGAGGGAG 58.915 57.143 0.00 0.00 0.00 4.30
2712 2976 2.552591 CGGATGTATCTACGGAGGGAGT 60.553 54.545 0.00 0.00 0.00 3.85
2713 2977 3.307269 CGGATGTATCTACGGAGGGAGTA 60.307 52.174 0.00 0.00 0.00 2.59
2718 2982 2.431954 TCTACGGAGGGAGTAACAGG 57.568 55.000 0.00 0.00 0.00 4.00
2830 3095 3.740115 CTGTTGTTAGTGGCACTAGGTT 58.260 45.455 25.00 4.50 31.47 3.50
2874 3139 5.046231 TGAGCCGGTATATAATGCATGGTAA 60.046 40.000 1.90 0.00 0.00 2.85
2988 3254 3.340814 AAGATTGAGCTGTCGGATTGT 57.659 42.857 0.00 0.00 0.00 2.71
3036 3302 1.270252 CCAATGTGTTTTGGGGCTGTC 60.270 52.381 0.00 0.00 42.09 3.51
3059 3325 3.040655 TCTATCCCGGATCAAGGTTCA 57.959 47.619 0.73 0.00 0.00 3.18
3100 4942 5.603395 TCCTCATCCGGTACAATATGGTTTA 59.397 40.000 0.00 0.00 0.00 2.01
3103 4945 6.160684 TCATCCGGTACAATATGGTTTATCG 58.839 40.000 0.00 0.00 0.00 2.92
3253 5103 2.622452 CCAGAAGGCCAACATGGAGATT 60.622 50.000 5.01 0.00 40.96 2.40
3673 5726 8.670135 CATTTCAACCATGCATAAATGACATTT 58.330 29.630 20.13 17.19 38.99 2.32
3693 5746 6.421801 ACATTTCTTGCTATTCAACTTGCAAC 59.578 34.615 0.00 0.00 39.98 4.17
3719 5772 3.193479 GGAAGCCTACTCACAAAATTGGG 59.807 47.826 0.00 0.00 0.00 4.12
3720 5773 2.807676 AGCCTACTCACAAAATTGGGG 58.192 47.619 0.00 0.00 30.87 4.96
3721 5774 2.378547 AGCCTACTCACAAAATTGGGGA 59.621 45.455 0.00 0.00 30.87 4.81
3837 5891 6.798959 GGAAACAGAGAACAAATCAAAGATCG 59.201 38.462 0.00 0.00 0.00 3.69
3879 5933 6.424207 CACTGACATTCATCTCCACATCTATG 59.576 42.308 0.00 0.00 0.00 2.23
4187 6243 3.881688 CAGAGTTTGAATAGCCCTGGATG 59.118 47.826 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.645059 TCAAATGTAAACATGTTTGACTTTCAA 57.355 25.926 29.72 7.95 36.56 2.69
3 4 9.081997 GTCAAATGTAAACATGTTTGACTTTCA 57.918 29.630 29.72 18.57 43.65 2.69
5 6 8.037758 TGGTCAAATGTAAACATGTTTGACTTT 58.962 29.630 29.72 21.38 44.92 2.66
7 8 7.106439 TGGTCAAATGTAAACATGTTTGACT 57.894 32.000 29.72 13.31 44.92 3.41
8 9 7.763172 TTGGTCAAATGTAAACATGTTTGAC 57.237 32.000 29.72 25.51 44.88 3.18
9 10 8.777865 TTTTGGTCAAATGTAAACATGTTTGA 57.222 26.923 29.72 17.27 36.56 2.69
49 50 9.083080 CGATACTGATTTGTGTAATGACTGTTA 57.917 33.333 0.00 0.00 0.00 2.41
50 51 7.602644 ACGATACTGATTTGTGTAATGACTGTT 59.397 33.333 0.00 0.00 0.00 3.16
51 52 7.097192 ACGATACTGATTTGTGTAATGACTGT 58.903 34.615 0.00 0.00 0.00 3.55
52 53 7.525688 ACGATACTGATTTGTGTAATGACTG 57.474 36.000 0.00 0.00 0.00 3.51
53 54 9.302345 CTAACGATACTGATTTGTGTAATGACT 57.698 33.333 0.00 0.00 0.00 3.41
54 55 9.297586 TCTAACGATACTGATTTGTGTAATGAC 57.702 33.333 0.00 0.00 0.00 3.06
58 59 9.863845 TGAATCTAACGATACTGATTTGTGTAA 57.136 29.630 0.00 0.00 30.41 2.41
60 61 8.820933 CATGAATCTAACGATACTGATTTGTGT 58.179 33.333 0.00 0.00 30.41 3.72
61 62 9.034544 TCATGAATCTAACGATACTGATTTGTG 57.965 33.333 0.00 0.00 30.41 3.33
62 63 9.770097 ATCATGAATCTAACGATACTGATTTGT 57.230 29.630 0.00 0.00 30.41 2.83
64 65 9.987272 TCATCATGAATCTAACGATACTGATTT 57.013 29.630 0.00 0.00 30.41 2.17
65 66 9.987272 TTCATCATGAATCTAACGATACTGATT 57.013 29.630 0.00 0.00 30.26 2.57
66 67 9.636879 CTTCATCATGAATCTAACGATACTGAT 57.363 33.333 0.00 0.00 35.59 2.90
67 68 8.633561 ACTTCATCATGAATCTAACGATACTGA 58.366 33.333 0.00 0.00 35.59 3.41
68 69 8.809159 ACTTCATCATGAATCTAACGATACTG 57.191 34.615 0.00 0.00 35.59 2.74
69 70 9.900710 GTACTTCATCATGAATCTAACGATACT 57.099 33.333 0.00 0.00 35.59 2.12
70 71 9.678941 TGTACTTCATCATGAATCTAACGATAC 57.321 33.333 0.00 0.00 35.59 2.24
71 72 9.678941 GTGTACTTCATCATGAATCTAACGATA 57.321 33.333 0.00 0.00 35.59 2.92
72 73 8.417106 AGTGTACTTCATCATGAATCTAACGAT 58.583 33.333 0.00 0.00 35.59 3.73
73 74 7.772166 AGTGTACTTCATCATGAATCTAACGA 58.228 34.615 0.00 0.00 35.59 3.85
74 75 7.993821 AGTGTACTTCATCATGAATCTAACG 57.006 36.000 0.00 0.00 35.59 3.18
144 145 9.305555 TCCGTGTCTAGCCTAGTTTATTTATAT 57.694 33.333 0.00 0.00 0.00 0.86
145 146 8.571336 GTCCGTGTCTAGCCTAGTTTATTTATA 58.429 37.037 0.00 0.00 0.00 0.98
146 147 7.069085 TGTCCGTGTCTAGCCTAGTTTATTTAT 59.931 37.037 0.00 0.00 0.00 1.40
147 148 6.377996 TGTCCGTGTCTAGCCTAGTTTATTTA 59.622 38.462 0.00 0.00 0.00 1.40
148 149 5.186409 TGTCCGTGTCTAGCCTAGTTTATTT 59.814 40.000 0.00 0.00 0.00 1.40
149 150 4.708421 TGTCCGTGTCTAGCCTAGTTTATT 59.292 41.667 0.00 0.00 0.00 1.40
150 151 4.275810 TGTCCGTGTCTAGCCTAGTTTAT 58.724 43.478 0.00 0.00 0.00 1.40
151 152 3.689347 TGTCCGTGTCTAGCCTAGTTTA 58.311 45.455 0.00 0.00 0.00 2.01
152 153 2.522185 TGTCCGTGTCTAGCCTAGTTT 58.478 47.619 0.00 0.00 0.00 2.66
153 154 2.211250 TGTCCGTGTCTAGCCTAGTT 57.789 50.000 0.00 0.00 0.00 2.24
154 155 2.025155 CATGTCCGTGTCTAGCCTAGT 58.975 52.381 0.00 0.00 0.00 2.57
155 156 2.025155 ACATGTCCGTGTCTAGCCTAG 58.975 52.381 0.00 0.00 0.00 3.02
156 157 2.139323 ACATGTCCGTGTCTAGCCTA 57.861 50.000 0.00 0.00 0.00 3.93
157 158 1.267121 AACATGTCCGTGTCTAGCCT 58.733 50.000 0.00 0.00 0.00 4.58
158 159 1.732259 CAAACATGTCCGTGTCTAGCC 59.268 52.381 0.00 0.00 0.00 3.93
159 160 2.412089 GTCAAACATGTCCGTGTCTAGC 59.588 50.000 0.00 0.00 0.00 3.42
160 161 2.993899 GGTCAAACATGTCCGTGTCTAG 59.006 50.000 0.00 0.00 0.00 2.43
161 162 2.631062 AGGTCAAACATGTCCGTGTCTA 59.369 45.455 0.00 0.00 0.00 2.59
162 163 1.416401 AGGTCAAACATGTCCGTGTCT 59.584 47.619 0.00 0.00 0.00 3.41
163 164 1.878953 AGGTCAAACATGTCCGTGTC 58.121 50.000 0.00 0.00 0.00 3.67
164 165 2.341846 AAGGTCAAACATGTCCGTGT 57.658 45.000 0.00 0.00 0.00 4.49
165 166 2.616376 TCAAAGGTCAAACATGTCCGTG 59.384 45.455 0.00 0.00 0.00 4.94
166 167 2.925724 TCAAAGGTCAAACATGTCCGT 58.074 42.857 0.00 0.00 0.00 4.69
167 168 3.563808 TCTTCAAAGGTCAAACATGTCCG 59.436 43.478 0.00 0.00 0.00 4.79
168 169 5.514274 TTCTTCAAAGGTCAAACATGTCC 57.486 39.130 0.00 0.00 0.00 4.02
169 170 7.826260 TTTTTCTTCAAAGGTCAAACATGTC 57.174 32.000 0.00 0.00 0.00 3.06
193 194 6.528537 TCCATAATGTAGTGCATGCTTTTT 57.471 33.333 20.33 6.67 37.96 1.94
194 195 6.071447 TGTTCCATAATGTAGTGCATGCTTTT 60.071 34.615 20.33 6.82 37.96 2.27
195 196 5.418524 TGTTCCATAATGTAGTGCATGCTTT 59.581 36.000 20.33 9.46 37.96 3.51
196 197 4.949238 TGTTCCATAATGTAGTGCATGCTT 59.051 37.500 20.33 9.84 37.96 3.91
197 198 4.525996 TGTTCCATAATGTAGTGCATGCT 58.474 39.130 20.33 1.26 37.96 3.79
198 199 4.898829 TGTTCCATAATGTAGTGCATGC 57.101 40.909 11.82 11.82 37.96 4.06
199 200 6.936335 TCCTATGTTCCATAATGTAGTGCATG 59.064 38.462 0.00 0.00 37.96 4.06
200 201 7.078249 TCCTATGTTCCATAATGTAGTGCAT 57.922 36.000 0.00 0.00 40.03 3.96
201 202 6.493189 TCCTATGTTCCATAATGTAGTGCA 57.507 37.500 0.00 0.00 0.00 4.57
202 203 6.992715 ACTTCCTATGTTCCATAATGTAGTGC 59.007 38.462 0.00 0.00 0.00 4.40
207 208 9.561069 GTTCATACTTCCTATGTTCCATAATGT 57.439 33.333 0.00 0.00 34.74 2.71
208 209 9.559732 TGTTCATACTTCCTATGTTCCATAATG 57.440 33.333 0.00 0.00 34.74 1.90
237 238 9.126151 TGGTTTCATTAGACTTGTCAACAAATA 57.874 29.630 3.49 0.00 35.15 1.40
238 239 8.006298 TGGTTTCATTAGACTTGTCAACAAAT 57.994 30.769 3.49 0.00 35.15 2.32
239 240 7.397892 TGGTTTCATTAGACTTGTCAACAAA 57.602 32.000 3.49 0.00 35.15 2.83
240 241 7.397892 TTGGTTTCATTAGACTTGTCAACAA 57.602 32.000 3.49 0.00 0.00 2.83
241 242 7.581213 ATTGGTTTCATTAGACTTGTCAACA 57.419 32.000 3.49 0.00 0.00 3.33
242 243 8.755018 CAAATTGGTTTCATTAGACTTGTCAAC 58.245 33.333 3.49 0.00 0.00 3.18
243 244 8.690884 TCAAATTGGTTTCATTAGACTTGTCAA 58.309 29.630 3.49 0.00 0.00 3.18
244 245 8.231692 TCAAATTGGTTTCATTAGACTTGTCA 57.768 30.769 3.49 0.00 0.00 3.58
245 246 9.132521 CATCAAATTGGTTTCATTAGACTTGTC 57.867 33.333 0.00 0.00 0.00 3.18
246 247 8.859090 TCATCAAATTGGTTTCATTAGACTTGT 58.141 29.630 0.00 0.00 0.00 3.16
247 248 9.865321 ATCATCAAATTGGTTTCATTAGACTTG 57.135 29.630 0.00 0.00 0.00 3.16
249 250 9.471702 AGATCATCAAATTGGTTTCATTAGACT 57.528 29.630 0.00 0.00 0.00 3.24
255 256 9.417561 ACATCTAGATCATCAAATTGGTTTCAT 57.582 29.630 1.03 0.00 0.00 2.57
256 257 8.812513 ACATCTAGATCATCAAATTGGTTTCA 57.187 30.769 1.03 0.00 0.00 2.69
257 258 9.512435 CAACATCTAGATCATCAAATTGGTTTC 57.488 33.333 1.03 0.00 0.00 2.78
258 259 8.472413 CCAACATCTAGATCATCAAATTGGTTT 58.528 33.333 1.03 0.00 0.00 3.27
259 260 7.616935 ACCAACATCTAGATCATCAAATTGGTT 59.383 33.333 1.03 0.00 42.55 3.67
260 261 7.121382 ACCAACATCTAGATCATCAAATTGGT 58.879 34.615 1.03 10.73 40.87 3.67
261 262 7.578310 ACCAACATCTAGATCATCAAATTGG 57.422 36.000 1.03 10.18 39.02 3.16
295 296 9.686683 AATATCTATAAGCTGAAACAAGTTGGT 57.313 29.630 7.96 0.00 0.00 3.67
321 322 8.655092 GGCAAATCGTTGATCAAATTAAATCAA 58.345 29.630 10.35 10.01 39.06 2.57
322 323 7.009083 CGGCAAATCGTTGATCAAATTAAATCA 59.991 33.333 10.35 0.00 36.83 2.57
323 324 7.329582 CGGCAAATCGTTGATCAAATTAAATC 58.670 34.615 10.35 0.00 36.83 2.17
324 325 6.255453 CCGGCAAATCGTTGATCAAATTAAAT 59.745 34.615 10.35 0.00 36.83 1.40
325 326 5.574830 CCGGCAAATCGTTGATCAAATTAAA 59.425 36.000 10.35 0.00 36.83 1.52
326 327 5.098893 CCGGCAAATCGTTGATCAAATTAA 58.901 37.500 10.35 0.00 36.83 1.40
327 328 4.156922 ACCGGCAAATCGTTGATCAAATTA 59.843 37.500 10.35 0.00 36.83 1.40
328 329 3.056891 ACCGGCAAATCGTTGATCAAATT 60.057 39.130 10.35 4.59 36.83 1.82
329 330 2.491693 ACCGGCAAATCGTTGATCAAAT 59.508 40.909 10.35 0.00 36.83 2.32
330 331 1.883275 ACCGGCAAATCGTTGATCAAA 59.117 42.857 10.35 0.00 36.83 2.69
331 332 1.198867 CACCGGCAAATCGTTGATCAA 59.801 47.619 3.38 3.38 36.83 2.57
332 333 0.801872 CACCGGCAAATCGTTGATCA 59.198 50.000 0.00 0.00 36.83 2.92
333 334 1.062587 CTCACCGGCAAATCGTTGATC 59.937 52.381 0.00 0.00 36.83 2.92
334 335 1.086696 CTCACCGGCAAATCGTTGAT 58.913 50.000 0.00 0.00 36.83 2.57
335 336 1.573829 GCTCACCGGCAAATCGTTGA 61.574 55.000 0.00 0.00 36.83 3.18
336 337 1.154225 GCTCACCGGCAAATCGTTG 60.154 57.895 0.00 0.00 37.83 4.10
337 338 2.332654 GGCTCACCGGCAAATCGTT 61.333 57.895 0.00 0.00 38.25 3.85
338 339 2.746277 GGCTCACCGGCAAATCGT 60.746 61.111 0.00 0.00 38.25 3.73
339 340 2.745884 TGGCTCACCGGCAAATCG 60.746 61.111 0.00 0.00 46.25 3.34
345 346 4.154347 CCTCTCTGGCTCACCGGC 62.154 72.222 0.00 0.00 42.73 6.13
346 347 3.465403 CCCTCTCTGGCTCACCGG 61.465 72.222 0.00 0.00 44.63 5.28
347 348 3.465403 CCCCTCTCTGGCTCACCG 61.465 72.222 0.00 0.00 39.70 4.94
348 349 2.284995 ACCCCTCTCTGGCTCACC 60.285 66.667 0.00 0.00 0.00 4.02
349 350 2.985456 CACCCCTCTCTGGCTCAC 59.015 66.667 0.00 0.00 0.00 3.51
350 351 3.005539 GCACCCCTCTCTGGCTCA 61.006 66.667 0.00 0.00 0.00 4.26
351 352 2.686835 AGCACCCCTCTCTGGCTC 60.687 66.667 0.00 0.00 0.00 4.70
352 353 2.686835 GAGCACCCCTCTCTGGCT 60.687 66.667 0.00 0.00 37.60 4.75
353 354 1.050988 TATGAGCACCCCTCTCTGGC 61.051 60.000 0.00 0.00 41.35 4.85
354 355 1.047002 CTATGAGCACCCCTCTCTGG 58.953 60.000 0.00 0.00 41.35 3.86
355 356 1.047002 CCTATGAGCACCCCTCTCTG 58.953 60.000 0.00 0.00 41.35 3.35
356 357 0.937441 TCCTATGAGCACCCCTCTCT 59.063 55.000 0.00 0.00 41.35 3.10
357 358 1.794714 TTCCTATGAGCACCCCTCTC 58.205 55.000 0.00 0.00 41.35 3.20
358 359 2.503869 ATTCCTATGAGCACCCCTCT 57.496 50.000 0.00 0.00 41.35 3.69
359 360 2.028930 CGTATTCCTATGAGCACCCCTC 60.029 54.545 0.00 0.00 41.15 4.30
360 361 1.971357 CGTATTCCTATGAGCACCCCT 59.029 52.381 0.00 0.00 0.00 4.79
361 362 1.002087 CCGTATTCCTATGAGCACCCC 59.998 57.143 0.00 0.00 0.00 4.95
362 363 1.692519 ACCGTATTCCTATGAGCACCC 59.307 52.381 0.00 0.00 0.00 4.61
363 364 2.755650 CACCGTATTCCTATGAGCACC 58.244 52.381 0.00 0.00 0.00 5.01
364 365 2.135933 GCACCGTATTCCTATGAGCAC 58.864 52.381 0.00 0.00 0.00 4.40
365 366 1.269569 CGCACCGTATTCCTATGAGCA 60.270 52.381 0.00 0.00 0.00 4.26
366 367 1.419374 CGCACCGTATTCCTATGAGC 58.581 55.000 0.00 0.00 0.00 4.26
367 368 1.419374 GCGCACCGTATTCCTATGAG 58.581 55.000 0.30 0.00 0.00 2.90
368 369 0.318360 CGCGCACCGTATTCCTATGA 60.318 55.000 8.75 0.00 0.00 2.15
369 370 1.886861 GCGCGCACCGTATTCCTATG 61.887 60.000 29.10 0.00 39.71 2.23
370 371 1.663702 GCGCGCACCGTATTCCTAT 60.664 57.895 29.10 0.00 39.71 2.57
371 372 2.278989 GCGCGCACCGTATTCCTA 60.279 61.111 29.10 0.00 39.71 2.94
387 388 4.740822 AGGTCAATGGCACCCCGC 62.741 66.667 0.00 0.00 41.28 6.13
388 389 2.556840 ATCAGGTCAATGGCACCCCG 62.557 60.000 0.00 0.00 33.96 5.73
389 390 1.039233 CATCAGGTCAATGGCACCCC 61.039 60.000 0.00 0.00 33.96 4.95
390 391 0.034186 TCATCAGGTCAATGGCACCC 60.034 55.000 0.00 0.00 33.96 4.61
391 392 1.838112 TTCATCAGGTCAATGGCACC 58.162 50.000 0.00 0.00 0.00 5.01
392 393 4.178540 CAATTTCATCAGGTCAATGGCAC 58.821 43.478 0.00 0.00 0.00 5.01
393 394 3.196039 CCAATTTCATCAGGTCAATGGCA 59.804 43.478 0.00 0.00 0.00 4.92
394 395 3.788937 CCAATTTCATCAGGTCAATGGC 58.211 45.455 0.00 0.00 0.00 4.40
395 396 3.196039 TGCCAATTTCATCAGGTCAATGG 59.804 43.478 0.00 0.00 0.00 3.16
396 397 4.178540 GTGCCAATTTCATCAGGTCAATG 58.821 43.478 0.00 0.00 0.00 2.82
397 398 3.119388 CGTGCCAATTTCATCAGGTCAAT 60.119 43.478 0.00 0.00 0.00 2.57
398 399 2.228582 CGTGCCAATTTCATCAGGTCAA 59.771 45.455 0.00 0.00 0.00 3.18
399 400 1.811965 CGTGCCAATTTCATCAGGTCA 59.188 47.619 0.00 0.00 0.00 4.02
400 401 1.812571 ACGTGCCAATTTCATCAGGTC 59.187 47.619 0.00 0.00 0.00 3.85
401 402 1.909700 ACGTGCCAATTTCATCAGGT 58.090 45.000 0.00 0.00 0.00 4.00
402 403 2.988493 CAAACGTGCCAATTTCATCAGG 59.012 45.455 0.00 0.00 0.00 3.86
403 404 2.409378 GCAAACGTGCCAATTTCATCAG 59.591 45.455 0.00 0.00 45.68 2.90
404 405 2.402305 GCAAACGTGCCAATTTCATCA 58.598 42.857 0.00 0.00 45.68 3.07
416 417 3.848272 ACAATCCTATTGGCAAACGTG 57.152 42.857 3.01 0.00 0.00 4.49
417 418 5.163561 CCATTACAATCCTATTGGCAAACGT 60.164 40.000 3.01 0.00 0.00 3.99
418 419 5.163561 ACCATTACAATCCTATTGGCAAACG 60.164 40.000 3.01 0.00 0.00 3.60
419 420 6.096846 AGACCATTACAATCCTATTGGCAAAC 59.903 38.462 3.01 0.00 0.00 2.93
420 421 6.194235 AGACCATTACAATCCTATTGGCAAA 58.806 36.000 3.01 0.00 0.00 3.68
421 422 5.765510 AGACCATTACAATCCTATTGGCAA 58.234 37.500 0.68 0.68 0.00 4.52
422 423 5.376625 GAGACCATTACAATCCTATTGGCA 58.623 41.667 4.78 0.00 0.00 4.92
423 424 4.762251 GGAGACCATTACAATCCTATTGGC 59.238 45.833 4.78 0.00 0.00 4.52
424 425 4.997395 CGGAGACCATTACAATCCTATTGG 59.003 45.833 4.78 0.00 0.00 3.16
425 426 5.611374 ACGGAGACCATTACAATCCTATTG 58.389 41.667 0.00 0.00 0.00 1.90
426 427 5.888982 ACGGAGACCATTACAATCCTATT 57.111 39.130 0.00 0.00 0.00 1.73
427 428 5.365605 TCAACGGAGACCATTACAATCCTAT 59.634 40.000 0.00 0.00 0.00 2.57
428 429 4.712829 TCAACGGAGACCATTACAATCCTA 59.287 41.667 0.00 0.00 0.00 2.94
429 430 3.517901 TCAACGGAGACCATTACAATCCT 59.482 43.478 0.00 0.00 0.00 3.24
430 431 3.869065 TCAACGGAGACCATTACAATCC 58.131 45.455 0.00 0.00 0.00 3.01
431 432 7.065324 TGTTAATCAACGGAGACCATTACAATC 59.935 37.037 0.00 0.00 37.48 2.67
432 433 6.882140 TGTTAATCAACGGAGACCATTACAAT 59.118 34.615 0.00 0.00 37.48 2.71
433 434 6.148150 GTGTTAATCAACGGAGACCATTACAA 59.852 38.462 0.00 0.00 37.48 2.41
434 435 5.640357 GTGTTAATCAACGGAGACCATTACA 59.360 40.000 0.00 0.00 37.48 2.41
435 436 5.640357 TGTGTTAATCAACGGAGACCATTAC 59.360 40.000 0.00 0.00 37.48 1.89
436 437 5.795972 TGTGTTAATCAACGGAGACCATTA 58.204 37.500 0.00 0.00 37.48 1.90
437 438 4.647611 TGTGTTAATCAACGGAGACCATT 58.352 39.130 0.00 0.00 37.48 3.16
438 439 4.280436 TGTGTTAATCAACGGAGACCAT 57.720 40.909 0.00 0.00 37.48 3.55
439 440 3.755112 TGTGTTAATCAACGGAGACCA 57.245 42.857 0.00 0.00 37.48 4.02
440 441 4.935808 AGATTGTGTTAATCAACGGAGACC 59.064 41.667 0.00 0.00 37.48 3.85
441 442 6.481954 AAGATTGTGTTAATCAACGGAGAC 57.518 37.500 0.00 0.00 37.48 3.36
442 443 7.444183 AGAAAAGATTGTGTTAATCAACGGAGA 59.556 33.333 0.00 0.00 37.48 3.71
443 444 7.584987 AGAAAAGATTGTGTTAATCAACGGAG 58.415 34.615 0.00 0.00 37.48 4.63
444 445 7.504924 AGAAAAGATTGTGTTAATCAACGGA 57.495 32.000 0.00 0.00 37.48 4.69
445 446 9.840427 AATAGAAAAGATTGTGTTAATCAACGG 57.160 29.630 0.00 0.00 37.48 4.44
448 449 9.554724 GCGAATAGAAAAGATTGTGTTAATCAA 57.445 29.630 0.00 0.00 0.00 2.57
449 450 8.726068 TGCGAATAGAAAAGATTGTGTTAATCA 58.274 29.630 0.00 0.00 0.00 2.57
450 451 9.554724 TTGCGAATAGAAAAGATTGTGTTAATC 57.445 29.630 0.00 0.00 0.00 1.75
451 452 9.906660 TTTGCGAATAGAAAAGATTGTGTTAAT 57.093 25.926 0.00 0.00 0.00 1.40
452 453 9.393249 CTTTGCGAATAGAAAAGATTGTGTTAA 57.607 29.630 0.00 0.00 46.36 2.01
453 454 8.779303 TCTTTGCGAATAGAAAAGATTGTGTTA 58.221 29.630 0.00 0.00 46.79 2.41
454 455 7.648142 TCTTTGCGAATAGAAAAGATTGTGTT 58.352 30.769 0.00 0.00 46.79 3.32
455 456 7.202016 TCTTTGCGAATAGAAAAGATTGTGT 57.798 32.000 0.00 0.00 46.79 3.72
462 463 6.145535 AGTGCTTTCTTTGCGAATAGAAAAG 58.854 36.000 9.89 6.13 45.10 2.27
463 464 6.072112 AGTGCTTTCTTTGCGAATAGAAAA 57.928 33.333 9.89 0.00 39.23 2.29
464 465 5.689383 AGTGCTTTCTTTGCGAATAGAAA 57.311 34.783 8.52 8.52 37.88 2.52
465 466 5.689383 AAGTGCTTTCTTTGCGAATAGAA 57.311 34.783 0.00 0.00 0.00 2.10
466 467 5.689383 AAAGTGCTTTCTTTGCGAATAGA 57.311 34.783 0.00 0.00 36.46 1.98
467 468 5.982056 GAAAGTGCTTTCTTTGCGAATAG 57.018 39.130 15.21 0.00 44.03 1.73
493 494 7.326454 CAAGATCAGTCATCCTTTCTGTCTAA 58.674 38.462 0.00 0.00 30.71 2.10
500 501 4.080638 AGACCCAAGATCAGTCATCCTTTC 60.081 45.833 0.00 0.00 32.82 2.62
503 504 3.037549 GAGACCCAAGATCAGTCATCCT 58.962 50.000 0.00 0.00 32.82 3.24
509 510 0.898320 CCGTGAGACCCAAGATCAGT 59.102 55.000 0.00 0.00 0.00 3.41
513 514 1.201429 AAGGCCGTGAGACCCAAGAT 61.201 55.000 0.00 0.00 0.00 2.40
665 678 7.595130 GTGCATTTTACTCTTTCCTTTCGATTT 59.405 33.333 0.00 0.00 0.00 2.17
666 679 7.084486 GTGCATTTTACTCTTTCCTTTCGATT 58.916 34.615 0.00 0.00 0.00 3.34
668 681 5.529430 TGTGCATTTTACTCTTTCCTTTCGA 59.471 36.000 0.00 0.00 0.00 3.71
669 682 5.757886 TGTGCATTTTACTCTTTCCTTTCG 58.242 37.500 0.00 0.00 0.00 3.46
670 683 6.089954 GCATGTGCATTTTACTCTTTCCTTTC 59.910 38.462 0.00 0.00 41.59 2.62
788 865 0.759436 ACGCAACCGGATAGAGGGAT 60.759 55.000 9.46 0.00 39.22 3.85
790 867 1.067582 GACGCAACCGGATAGAGGG 59.932 63.158 9.46 3.62 39.22 4.30
791 868 1.067582 GGACGCAACCGGATAGAGG 59.932 63.158 9.46 0.00 39.22 3.69
870 950 0.474184 AAGGAAGGAGGTGTGTGTGG 59.526 55.000 0.00 0.00 0.00 4.17
1144 1228 6.157211 CGACTAACTAAGAAGAAGGAAAGCA 58.843 40.000 0.00 0.00 0.00 3.91
1160 1244 1.753463 CCCCCGAGAGCGACTAACT 60.753 63.158 0.00 0.00 40.82 2.24
1263 1354 2.158971 ACAAAACAGCCACATTTCCCAC 60.159 45.455 0.00 0.00 0.00 4.61
1291 1382 1.828768 CAGAGCAGAGGACCCATCC 59.171 63.158 0.00 0.00 46.69 3.51
1292 1383 1.145819 GCAGAGCAGAGGACCCATC 59.854 63.158 0.00 0.00 0.00 3.51
1293 1384 1.306825 AGCAGAGCAGAGGACCCAT 60.307 57.895 0.00 0.00 0.00 4.00
1312 1403 3.199677 TGCCTTTTATGTTATCGGTCGG 58.800 45.455 0.00 0.00 0.00 4.79
1380 1513 1.741706 GCACATCACTTGACAGATGGG 59.258 52.381 7.26 4.07 46.03 4.00
1389 1522 1.066858 ACGGTAGGAGCACATCACTTG 60.067 52.381 0.00 0.00 0.00 3.16
1436 1583 8.557029 AGAAAACAAAATCGTTAACCAGAGTAG 58.443 33.333 0.00 0.00 0.00 2.57
1450 1597 4.853743 GTGATCGGAGCAGAAAACAAAATC 59.146 41.667 0.00 0.00 0.00 2.17
1479 1626 0.827368 GTAGGCCTTGGAGGAGTGAG 59.173 60.000 12.58 0.00 37.67 3.51
1494 1641 2.108168 TGTAAGCAGTAGCAGGGTAGG 58.892 52.381 0.00 0.00 45.49 3.18
1497 1644 1.003233 GGTTGTAAGCAGTAGCAGGGT 59.997 52.381 0.00 0.00 45.49 4.34
1529 1676 2.446435 ACAAATGAACAAGATCCCCCG 58.554 47.619 0.00 0.00 0.00 5.73
1535 1682 9.985730 ATTATGACACAAACAAATGAACAAGAT 57.014 25.926 0.00 0.00 0.00 2.40
1543 1690 8.005466 GTGCAAGAATTATGACACAAACAAATG 58.995 33.333 0.00 0.00 0.00 2.32
1544 1691 7.710044 TGTGCAAGAATTATGACACAAACAAAT 59.290 29.630 6.08 0.00 34.37 2.32
1554 1701 9.229784 CTATGAAATGTGTGCAAGAATTATGAC 57.770 33.333 0.00 0.00 0.00 3.06
1556 1703 9.577110 AACTATGAAATGTGTGCAAGAATTATG 57.423 29.630 0.00 0.00 0.00 1.90
1559 1706 8.362639 AGAAACTATGAAATGTGTGCAAGAATT 58.637 29.630 0.00 0.00 0.00 2.17
1560 1707 7.889469 AGAAACTATGAAATGTGTGCAAGAAT 58.111 30.769 0.00 0.00 0.00 2.40
1563 1710 7.365741 AGAAGAAACTATGAAATGTGTGCAAG 58.634 34.615 0.00 0.00 0.00 4.01
1564 1711 7.275888 AGAAGAAACTATGAAATGTGTGCAA 57.724 32.000 0.00 0.00 0.00 4.08
1578 1725 6.269077 TCACCCAAGTCACATAGAAGAAACTA 59.731 38.462 0.00 0.00 0.00 2.24
1579 1726 5.071788 TCACCCAAGTCACATAGAAGAAACT 59.928 40.000 0.00 0.00 0.00 2.66
1580 1727 5.305585 TCACCCAAGTCACATAGAAGAAAC 58.694 41.667 0.00 0.00 0.00 2.78
1581 1728 5.560722 TCACCCAAGTCACATAGAAGAAA 57.439 39.130 0.00 0.00 0.00 2.52
1582 1729 5.762179 ATCACCCAAGTCACATAGAAGAA 57.238 39.130 0.00 0.00 0.00 2.52
1583 1730 6.867519 TTATCACCCAAGTCACATAGAAGA 57.132 37.500 0.00 0.00 0.00 2.87
1584 1731 8.511604 AATTTATCACCCAAGTCACATAGAAG 57.488 34.615 0.00 0.00 0.00 2.85
1585 1732 8.328758 AGAATTTATCACCCAAGTCACATAGAA 58.671 33.333 0.00 0.00 0.00 2.10
1586 1733 7.861629 AGAATTTATCACCCAAGTCACATAGA 58.138 34.615 0.00 0.00 0.00 1.98
1587 1734 8.400947 CAAGAATTTATCACCCAAGTCACATAG 58.599 37.037 0.00 0.00 0.00 2.23
1588 1735 7.888021 ACAAGAATTTATCACCCAAGTCACATA 59.112 33.333 0.00 0.00 0.00 2.29
1589 1736 6.721208 ACAAGAATTTATCACCCAAGTCACAT 59.279 34.615 0.00 0.00 0.00 3.21
1590 1737 6.068010 ACAAGAATTTATCACCCAAGTCACA 58.932 36.000 0.00 0.00 0.00 3.58
1591 1738 6.575162 ACAAGAATTTATCACCCAAGTCAC 57.425 37.500 0.00 0.00 0.00 3.67
1592 1739 7.174253 GTGTACAAGAATTTATCACCCAAGTCA 59.826 37.037 0.00 0.00 0.00 3.41
1593 1740 7.174253 TGTGTACAAGAATTTATCACCCAAGTC 59.826 37.037 0.00 0.00 0.00 3.01
1594 1741 7.001674 TGTGTACAAGAATTTATCACCCAAGT 58.998 34.615 0.00 0.00 0.00 3.16
1595 1742 7.447374 TGTGTACAAGAATTTATCACCCAAG 57.553 36.000 0.00 0.00 0.00 3.61
1596 1743 8.415950 AATGTGTACAAGAATTTATCACCCAA 57.584 30.769 0.00 0.00 0.00 4.12
1597 1744 8.415950 AAATGTGTACAAGAATTTATCACCCA 57.584 30.769 0.00 0.00 0.00 4.51
1598 1745 8.519526 TGAAATGTGTACAAGAATTTATCACCC 58.480 33.333 0.00 0.00 0.00 4.61
1609 1756 9.778741 AGAAGAAACTATGAAATGTGTACAAGA 57.221 29.630 0.00 0.00 0.00 3.02
1617 1764 9.965902 AATCTGGTAGAAGAAACTATGAAATGT 57.034 29.630 0.00 0.00 0.00 2.71
1648 1796 8.297470 ACTTCATAATTTGCACAGGATTGTAT 57.703 30.769 0.00 0.00 35.25 2.29
1651 1799 8.246180 AGTTACTTCATAATTTGCACAGGATTG 58.754 33.333 0.00 0.00 0.00 2.67
1688 1836 6.128145 GCAGAAGAAGGAAGAAGTTGATTACC 60.128 42.308 0.00 0.00 0.00 2.85
1696 1844 4.133078 CAACTGCAGAAGAAGGAAGAAGT 58.867 43.478 23.35 0.00 0.00 3.01
1703 1851 2.149578 CTCCACAACTGCAGAAGAAGG 58.850 52.381 23.35 17.45 0.00 3.46
1704 1852 2.805099 GTCTCCACAACTGCAGAAGAAG 59.195 50.000 23.35 9.69 0.00 2.85
1753 1901 3.231734 CTGATGACCAGGAAACGCA 57.768 52.632 0.00 0.00 39.23 5.24
1762 1910 4.684724 AGTTAGTACCTTCCTGATGACCA 58.315 43.478 0.00 0.00 0.00 4.02
1783 1931 7.654022 AAGAAGTAGAGAGAGGAAATGGTAG 57.346 40.000 0.00 0.00 0.00 3.18
1838 1996 1.914764 AAAGGGCCCTGCAATGGTG 60.915 57.895 29.50 0.00 0.00 4.17
1867 2025 6.541641 AGCAGCTCTCCAATTACAGAAAATAG 59.458 38.462 0.00 0.00 0.00 1.73
1907 2066 5.399013 ACGAGGCAAAACATAAGCATAAAC 58.601 37.500 0.00 0.00 0.00 2.01
1975 2134 4.082136 ACTCCTTTGTAAGCCTCTTCTACG 60.082 45.833 0.00 0.00 0.00 3.51
2044 2203 5.565509 TGGCAACCAACTATTACTTCATCA 58.434 37.500 0.00 0.00 0.00 3.07
2047 2206 6.943146 TGTTATGGCAACCAACTATTACTTCA 59.057 34.615 0.00 0.00 36.95 3.02
2134 2293 0.478072 AACCTCTGTCCACATGGCAA 59.522 50.000 0.00 0.00 34.44 4.52
2159 2318 4.039973 ACAGCAAGCACCTAGTAGTTGTTA 59.960 41.667 0.00 0.00 0.00 2.41
2161 2320 2.368875 ACAGCAAGCACCTAGTAGTTGT 59.631 45.455 0.00 0.00 0.00 3.32
2172 2331 3.803778 AGCAAAATGTAAACAGCAAGCAC 59.196 39.130 0.00 0.00 0.00 4.40
2173 2332 4.057406 AGCAAAATGTAAACAGCAAGCA 57.943 36.364 0.00 0.00 0.00 3.91
2202 2366 2.858745 TGAGGCCACTACAGGAAAAAC 58.141 47.619 5.01 0.00 0.00 2.43
2203 2367 3.330701 AGATGAGGCCACTACAGGAAAAA 59.669 43.478 5.01 0.00 0.00 1.94
2206 2370 1.833630 CAGATGAGGCCACTACAGGAA 59.166 52.381 5.01 0.00 0.00 3.36
2207 2371 1.489481 CAGATGAGGCCACTACAGGA 58.511 55.000 5.01 0.00 0.00 3.86
2208 2372 0.179062 GCAGATGAGGCCACTACAGG 60.179 60.000 5.01 0.00 0.00 4.00
2209 2373 0.829333 AGCAGATGAGGCCACTACAG 59.171 55.000 5.01 0.00 0.00 2.74
2213 2380 1.798626 TATCAGCAGATGAGGCCACT 58.201 50.000 5.01 0.00 42.53 4.00
2216 2383 3.540314 CCTATATCAGCAGATGAGGCC 57.460 52.381 1.18 0.00 42.53 5.19
2223 2390 3.696548 CGGATACAGCCTATATCAGCAGA 59.303 47.826 0.00 0.00 31.69 4.26
2295 2550 6.348132 CGACAGGTGAGCACAAATAACAATAA 60.348 38.462 2.75 0.00 0.00 1.40
2320 2576 4.194640 ACATATGCCATCTCAGTTGTGTC 58.805 43.478 1.58 0.00 0.00 3.67
2326 2582 4.262808 GGCTAGAACATATGCCATCTCAGT 60.263 45.833 1.58 0.00 44.34 3.41
2334 2590 3.556004 GGACAGAGGCTAGAACATATGCC 60.556 52.174 1.58 0.00 45.21 4.40
2336 2592 4.944619 TGGACAGAGGCTAGAACATATG 57.055 45.455 0.00 0.00 0.00 1.78
2381 2639 9.918630 ATGTGAGAATAAGGAAAACTGAAAATG 57.081 29.630 0.00 0.00 0.00 2.32
2433 2691 6.138761 CACTGAAGTAGCTCAATTTGACAAC 58.861 40.000 0.00 0.00 0.00 3.32
2444 2702 4.768130 TGTAGTCACACTGAAGTAGCTC 57.232 45.455 0.00 0.00 0.00 4.09
2499 2757 4.202567 TGGAACTTTAGCCCTGTCTTCAAT 60.203 41.667 0.00 0.00 0.00 2.57
2540 2802 5.140454 AGAAACAATTGTTAGGCTGGAAGT 58.860 37.500 23.53 4.45 37.25 3.01
2543 2805 6.478512 AAAAGAAACAATTGTTAGGCTGGA 57.521 33.333 23.53 0.00 37.25 3.86
2566 2830 7.068593 CCATTACCAGCCTTTCTGATGAAAATA 59.931 37.037 0.00 0.00 45.72 1.40
2582 2846 6.712095 TCAATGATAACTCATCCATTACCAGC 59.288 38.462 0.00 0.00 41.34 4.85
2583 2847 8.727910 CATCAATGATAACTCATCCATTACCAG 58.272 37.037 0.00 0.00 41.34 4.00
2629 2893 4.096984 GGAGTACCATTCAGCAAGGAAATG 59.903 45.833 0.00 0.00 35.97 2.32
2649 2913 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2650 2914 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2651 2915 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2652 2916 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2653 2917 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2654 2918 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2655 2919 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2656 2920 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2657 2921 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2658 2922 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2659 2923 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2667 2931 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
2668 2932 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
2670 2934 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
2671 2935 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
2678 2942 9.622004 CGTAGATACATCCGTATTTAGACAAAT 57.378 33.333 0.00 0.00 38.48 2.32
2679 2943 8.077991 CCGTAGATACATCCGTATTTAGACAAA 58.922 37.037 0.00 0.00 38.48 2.83
2680 2944 7.445096 TCCGTAGATACATCCGTATTTAGACAA 59.555 37.037 0.00 0.00 38.48 3.18
2681 2945 6.936335 TCCGTAGATACATCCGTATTTAGACA 59.064 38.462 0.00 0.00 38.48 3.41
2682 2946 7.369803 TCCGTAGATACATCCGTATTTAGAC 57.630 40.000 0.00 0.00 38.48 2.59
2683 2947 6.596888 CCTCCGTAGATACATCCGTATTTAGA 59.403 42.308 0.00 0.00 38.48 2.10
2684 2948 6.183360 CCCTCCGTAGATACATCCGTATTTAG 60.183 46.154 0.00 0.00 38.48 1.85
2685 2949 5.649395 CCCTCCGTAGATACATCCGTATTTA 59.351 44.000 0.00 0.00 38.48 1.40
2686 2950 4.461781 CCCTCCGTAGATACATCCGTATTT 59.538 45.833 0.00 0.00 38.48 1.40
2687 2951 4.015084 CCCTCCGTAGATACATCCGTATT 58.985 47.826 0.00 0.00 38.48 1.89
2688 2952 3.265221 TCCCTCCGTAGATACATCCGTAT 59.735 47.826 0.00 0.00 41.16 3.06
2689 2953 2.639347 TCCCTCCGTAGATACATCCGTA 59.361 50.000 0.00 0.00 0.00 4.02
2690 2954 1.422781 TCCCTCCGTAGATACATCCGT 59.577 52.381 0.00 0.00 0.00 4.69
2691 2955 2.085320 CTCCCTCCGTAGATACATCCG 58.915 57.143 0.00 0.00 0.00 4.18
2692 2956 3.157750 ACTCCCTCCGTAGATACATCC 57.842 52.381 0.00 0.00 0.00 3.51
2693 2957 5.068636 TGTTACTCCCTCCGTAGATACATC 58.931 45.833 0.00 0.00 0.00 3.06
2694 2958 5.057843 TGTTACTCCCTCCGTAGATACAT 57.942 43.478 0.00 0.00 0.00 2.29
2695 2959 4.458397 CTGTTACTCCCTCCGTAGATACA 58.542 47.826 0.00 0.00 0.00 2.29
2696 2960 3.819902 CCTGTTACTCCCTCCGTAGATAC 59.180 52.174 0.00 0.00 0.00 2.24
2697 2961 3.181436 CCCTGTTACTCCCTCCGTAGATA 60.181 52.174 0.00 0.00 0.00 1.98
2698 2962 2.424523 CCCTGTTACTCCCTCCGTAGAT 60.425 54.545 0.00 0.00 0.00 1.98
2699 2963 1.064166 CCCTGTTACTCCCTCCGTAGA 60.064 57.143 0.00 0.00 0.00 2.59
2700 2964 1.341778 ACCCTGTTACTCCCTCCGTAG 60.342 57.143 0.00 0.00 0.00 3.51
2701 2965 0.706433 ACCCTGTTACTCCCTCCGTA 59.294 55.000 0.00 0.00 0.00 4.02
2702 2966 0.706433 TACCCTGTTACTCCCTCCGT 59.294 55.000 0.00 0.00 0.00 4.69
2703 2967 1.400737 CTACCCTGTTACTCCCTCCG 58.599 60.000 0.00 0.00 0.00 4.63
2704 2968 1.008084 ACCTACCCTGTTACTCCCTCC 59.992 57.143 0.00 0.00 0.00 4.30
2705 2969 2.546652 ACCTACCCTGTTACTCCCTC 57.453 55.000 0.00 0.00 0.00 4.30
2706 2970 2.931771 AGTACCTACCCTGTTACTCCCT 59.068 50.000 0.00 0.00 0.00 4.20
2707 2971 3.029570 CAGTACCTACCCTGTTACTCCC 58.970 54.545 0.00 0.00 0.00 4.30
2708 2972 3.698539 GACAGTACCTACCCTGTTACTCC 59.301 52.174 0.00 0.00 41.80 3.85
2709 2973 3.698539 GGACAGTACCTACCCTGTTACTC 59.301 52.174 0.00 0.00 41.80 2.59
2710 2974 3.076484 TGGACAGTACCTACCCTGTTACT 59.924 47.826 0.00 0.00 41.80 2.24
2711 2975 3.194329 GTGGACAGTACCTACCCTGTTAC 59.806 52.174 0.00 0.00 41.80 2.50
2712 2976 3.181419 TGTGGACAGTACCTACCCTGTTA 60.181 47.826 0.00 0.00 41.80 2.41
2713 2977 2.254508 GTGGACAGTACCTACCCTGTT 58.745 52.381 0.00 0.00 41.80 3.16
2718 2982 5.007385 CACTAATGTGGACAGTACCTACC 57.993 47.826 0.00 0.00 40.33 3.18
2830 3095 5.221722 GCTCAGAGGGAATATGAACCATACA 60.222 44.000 0.00 0.00 0.00 2.29
2988 3254 4.142708 GGTTCACATGATGCGTACATTTCA 60.143 41.667 0.00 0.00 36.35 2.69
3036 3302 2.260822 ACCTTGATCCGGGATAGATGG 58.739 52.381 10.08 12.92 0.00 3.51
3059 3325 3.120898 GAGGAATGGTAAGGTAAGGGGT 58.879 50.000 0.00 0.00 0.00 4.95
3100 4942 8.888579 ACGAGATTGTTAATTAAGGATTCGAT 57.111 30.769 18.14 5.92 0.00 3.59
3123 4973 3.110027 TGCATTGCAGCATTCAACG 57.890 47.368 7.38 0.00 40.11 4.10
3253 5103 1.202687 CCATTCCCATCTGCTCGCTTA 60.203 52.381 0.00 0.00 0.00 3.09
3470 5347 9.817365 CTAATCTTCCTTGAATAATAACATGCG 57.183 33.333 0.00 0.00 0.00 4.73
3485 5362 7.348537 AGGAGCAAGGTAATACTAATCTTCCTT 59.651 37.037 0.00 0.00 34.69 3.36
3540 5417 9.813826 AAGATCTTATTATCACCCCCAAATTAG 57.186 33.333 6.06 0.00 0.00 1.73
3541 5418 9.807921 GAAGATCTTATTATCACCCCCAAATTA 57.192 33.333 8.25 0.00 0.00 1.40
3618 5507 7.530426 AGGAAACTCACTTTTATGAAATGCT 57.470 32.000 0.00 0.00 32.90 3.79
3668 5721 6.088016 TGCAAGTTGAATAGCAAGAAATGT 57.912 33.333 7.16 0.00 37.12 2.71
3673 5726 3.812609 TCGTTGCAAGTTGAATAGCAAGA 59.187 39.130 7.16 0.92 46.32 3.02
3693 5746 2.743636 TTGTGAGTAGGCTTCCTTCG 57.256 50.000 0.00 0.00 34.61 3.79
3747 5800 9.917129 TGTAATATTTCAGTTTTGAGTCGTAGA 57.083 29.630 0.00 0.00 34.15 2.59
3837 5891 2.478134 CAGTGCTAGCTTGTTCTGTCAC 59.522 50.000 17.23 1.12 0.00 3.67
3879 5933 8.427774 GCTTAGAATGCAATTTGTTTCTTGTAC 58.572 33.333 16.57 0.00 36.07 2.90
4187 6243 1.062587 CATCCGTGGAATTGTTCGCTC 59.937 52.381 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.