Multiple sequence alignment - TraesCS5D01G513600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G513600 chr5D 100.000 5586 0 0 1 5586 537670747 537676332 0.000000e+00 10316.0
1 TraesCS5D01G513600 chr5D 83.294 425 62 8 5167 5583 537737502 537737925 3.160000e-102 383.0
2 TraesCS5D01G513600 chr5D 80.328 183 31 5 5403 5583 537750839 537751018 3.510000e-27 134.0
3 TraesCS5D01G513600 chr4A 94.777 2355 79 21 2565 4914 631922726 631925041 0.000000e+00 3627.0
4 TraesCS5D01G513600 chr4A 86.193 1941 135 64 681 2557 631920809 631922680 0.000000e+00 1977.0
5 TraesCS5D01G513600 chr4A 90.774 607 30 14 4999 5586 631925249 631925848 0.000000e+00 787.0
6 TraesCS5D01G513600 chr4A 87.059 340 39 4 5128 5464 631940101 631940438 4.080000e-101 379.0
7 TraesCS5D01G513600 chr4A 100.000 37 0 0 4927 4963 631925036 631925072 1.000000e-07 69.4
8 TraesCS5D01G513600 chr5B 85.405 2124 174 76 523 2566 678335500 678337567 0.000000e+00 2080.0
9 TraesCS5D01G513600 chr5B 95.286 1188 51 5 3779 4963 678338429 678339614 0.000000e+00 1879.0
10 TraesCS5D01G513600 chr5B 97.579 826 19 1 2565 3390 678337604 678338428 0.000000e+00 1413.0
11 TraesCS5D01G513600 chr5B 89.697 660 27 15 4961 5586 678339764 678340416 0.000000e+00 804.0
12 TraesCS5D01G513600 chr5B 84.764 466 54 14 5124 5583 678439456 678439910 8.530000e-123 451.0
13 TraesCS5D01G513600 chr5B 90.196 51 5 0 1774 1824 678336467 678336517 3.610000e-07 67.6
14 TraesCS5D01G513600 chr2B 81.899 337 54 3 16 352 95989102 95989431 1.530000e-70 278.0
15 TraesCS5D01G513600 chr2B 81.899 337 54 3 16 352 95997408 95997737 1.530000e-70 278.0
16 TraesCS5D01G513600 chr2B 80.508 354 58 6 1 352 96005757 96006101 1.540000e-65 261.0
17 TraesCS5D01G513600 chr2B 80.303 330 58 7 16 345 95980920 95981242 5.590000e-60 243.0
18 TraesCS5D01G513600 chr3D 80.597 335 59 3 18 352 48792909 48793237 2.580000e-63 254.0
19 TraesCS5D01G513600 chr6A 79.370 349 59 8 6 352 99064628 99064291 3.360000e-57 233.0
20 TraesCS5D01G513600 chr2D 78.310 355 64 9 1 352 309938925 309939269 3.390000e-52 217.0
21 TraesCS5D01G513600 chr1B 78.000 350 66 7 6 352 18427082 18426741 5.670000e-50 209.0
22 TraesCS5D01G513600 chr7B 81.148 244 46 0 6 249 621902974 621902731 4.410000e-46 196.0
23 TraesCS5D01G513600 chr7A 75.481 208 42 9 153 359 666962581 666962780 5.960000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G513600 chr5D 537670747 537676332 5585 False 10316.00 10316 100.0000 1 5586 1 chr5D.!!$F1 5585
1 TraesCS5D01G513600 chr4A 631920809 631925848 5039 False 1615.10 3627 92.9360 681 5586 4 chr4A.!!$F2 4905
2 TraesCS5D01G513600 chr5B 678335500 678340416 4916 False 1248.72 2080 91.6326 523 5586 5 chr5B.!!$F2 5063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.031449 CGATCTTCTCGGGAGCCTTC 59.969 60.000 0.00 0.00 43.82 3.46 F
161 162 0.031515 TCCACCGGGGTATGAGTCAT 60.032 55.000 11.12 11.12 38.11 3.06 F
240 241 0.036732 ACTGACAACATGATGGCGGT 59.963 50.000 17.11 17.11 43.23 5.68 F
1507 1619 0.037139 GCATGTGCCTGATGCCAAAA 60.037 50.000 0.00 0.00 40.37 2.44 F
1917 2040 0.108186 GCAGGGGCCATTAGTTTTGC 60.108 55.000 4.39 0.00 0.00 3.68 F
2328 2454 0.179119 CATCAACCGTCTACCGTCCC 60.179 60.000 0.00 0.00 33.66 4.46 F
3412 3576 1.227943 GCTGTGTCTTGGGAGCACA 60.228 57.895 0.00 0.00 37.49 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1982 0.038343 CCTGAACCCACAAAATGCGG 60.038 55.000 0.00 0.0 0.00 5.69 R
1917 2040 0.621609 TTTATGTCCCCTGTTCCCCG 59.378 55.000 0.00 0.0 0.00 5.73 R
2028 2151 2.095718 GCCTCACGGAGAACAAAATCAC 60.096 50.000 2.84 0.0 0.00 3.06 R
2553 2679 0.820226 AGCATACAAGAGCTGCGAGA 59.180 50.000 0.00 0.0 40.13 4.04 R
3391 3555 1.072159 GCTCCCAAGACACAGCAGT 59.928 57.895 0.00 0.0 0.00 4.40 R
4066 4230 0.813610 TAACAATGCGGATGCCCTCG 60.814 55.000 0.00 0.0 41.78 4.63 R
4868 5036 2.378547 AGCCTACTCACAAAATTGGGGA 59.621 45.455 0.00 0.0 30.87 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.462678 GAGAGGACAGGCCCCGAC 61.463 72.222 0.00 0.00 37.37 4.79
32 33 3.518998 CCCGACCGACAGCGAGAT 61.519 66.667 0.00 0.00 40.82 2.75
33 34 2.024871 CCGACCGACAGCGAGATC 59.975 66.667 0.00 0.00 40.82 2.75
34 35 2.473760 CCGACCGACAGCGAGATCT 61.474 63.158 0.00 0.00 40.82 2.75
35 36 1.297967 CGACCGACAGCGAGATCTG 60.298 63.158 0.00 0.00 40.82 2.90
40 41 3.201494 ACAGCGAGATCTGTCCGG 58.799 61.111 0.00 0.00 43.28 5.14
41 42 2.279120 CAGCGAGATCTGTCCGGC 60.279 66.667 0.00 0.00 0.00 6.13
42 43 2.755876 AGCGAGATCTGTCCGGCA 60.756 61.111 0.00 0.00 0.00 5.69
43 44 2.130426 AGCGAGATCTGTCCGGCAT 61.130 57.895 0.00 0.00 0.00 4.40
44 45 1.953138 GCGAGATCTGTCCGGCATG 60.953 63.158 0.00 0.00 0.00 4.06
45 46 1.735973 CGAGATCTGTCCGGCATGA 59.264 57.895 0.00 0.00 0.00 3.07
46 47 0.318529 CGAGATCTGTCCGGCATGAG 60.319 60.000 0.00 0.00 0.00 2.90
47 48 0.749649 GAGATCTGTCCGGCATGAGT 59.250 55.000 0.00 0.00 0.00 3.41
48 49 0.749649 AGATCTGTCCGGCATGAGTC 59.250 55.000 0.00 0.00 0.00 3.36
49 50 0.249657 GATCTGTCCGGCATGAGTCC 60.250 60.000 0.00 0.00 0.00 3.85
50 51 0.977627 ATCTGTCCGGCATGAGTCCA 60.978 55.000 0.00 0.00 0.00 4.02
51 52 0.977627 TCTGTCCGGCATGAGTCCAT 60.978 55.000 0.00 0.00 0.00 3.41
52 53 0.107508 CTGTCCGGCATGAGTCCATT 60.108 55.000 0.00 0.00 0.00 3.16
53 54 0.392863 TGTCCGGCATGAGTCCATTG 60.393 55.000 0.00 0.00 0.00 2.82
54 55 0.392998 GTCCGGCATGAGTCCATTGT 60.393 55.000 0.00 0.00 0.00 2.71
55 56 0.392863 TCCGGCATGAGTCCATTGTG 60.393 55.000 0.00 0.00 0.00 3.33
56 57 0.677731 CCGGCATGAGTCCATTGTGT 60.678 55.000 0.00 0.00 0.00 3.72
57 58 0.729116 CGGCATGAGTCCATTGTGTC 59.271 55.000 0.00 0.00 0.00 3.67
58 59 0.729116 GGCATGAGTCCATTGTGTCG 59.271 55.000 0.00 0.00 0.00 4.35
59 60 0.729116 GCATGAGTCCATTGTGTCGG 59.271 55.000 0.00 0.00 0.00 4.79
60 61 0.729116 CATGAGTCCATTGTGTCGGC 59.271 55.000 0.00 0.00 0.00 5.54
61 62 0.740868 ATGAGTCCATTGTGTCGGCG 60.741 55.000 0.00 0.00 0.00 6.46
62 63 2.740714 GAGTCCATTGTGTCGGCGC 61.741 63.158 0.00 0.00 0.00 6.53
63 64 3.047280 GTCCATTGTGTCGGCGCA 61.047 61.111 10.83 0.00 0.00 6.09
64 65 2.046411 TCCATTGTGTCGGCGCAT 60.046 55.556 10.83 0.00 34.80 4.73
65 66 2.106074 TCCATTGTGTCGGCGCATC 61.106 57.895 10.83 0.00 34.80 3.91
66 67 2.108514 CCATTGTGTCGGCGCATCT 61.109 57.895 10.83 0.00 34.80 2.90
67 68 1.061411 CATTGTGTCGGCGCATCTG 59.939 57.895 10.83 1.29 34.80 2.90
68 69 2.108514 ATTGTGTCGGCGCATCTGG 61.109 57.895 10.83 0.00 34.80 3.86
78 79 3.040763 GCATCTGGCGCTCGGATC 61.041 66.667 7.64 4.72 39.36 3.36
79 80 2.356793 CATCTGGCGCTCGGATCC 60.357 66.667 7.64 0.00 39.36 3.36
80 81 2.522923 ATCTGGCGCTCGGATCCT 60.523 61.111 10.75 0.00 36.83 3.24
81 82 2.136878 ATCTGGCGCTCGGATCCTT 61.137 57.895 10.75 0.00 36.83 3.36
82 83 2.093537 ATCTGGCGCTCGGATCCTTC 62.094 60.000 10.75 0.00 36.83 3.46
83 84 4.207281 TGGCGCTCGGATCCTTCG 62.207 66.667 10.75 11.09 0.00 3.79
84 85 4.951963 GGCGCTCGGATCCTTCGG 62.952 72.222 10.75 0.00 0.00 4.30
85 86 4.208686 GCGCTCGGATCCTTCGGT 62.209 66.667 10.75 0.00 0.00 4.69
86 87 2.278857 CGCTCGGATCCTTCGGTG 60.279 66.667 10.75 0.05 0.00 4.94
87 88 2.586357 GCTCGGATCCTTCGGTGC 60.586 66.667 10.75 2.95 35.49 5.01
88 89 3.082579 GCTCGGATCCTTCGGTGCT 62.083 63.158 10.75 0.00 38.16 4.40
89 90 1.227089 CTCGGATCCTTCGGTGCTG 60.227 63.158 10.75 0.00 0.00 4.41
90 91 2.202932 CGGATCCTTCGGTGCTGG 60.203 66.667 10.75 0.00 0.00 4.85
91 92 2.721167 CGGATCCTTCGGTGCTGGA 61.721 63.158 10.75 0.00 0.00 3.86
92 93 1.832912 GGATCCTTCGGTGCTGGAT 59.167 57.895 3.84 0.00 42.65 3.41
93 94 3.297391 GATCCTTCGGTGCTGGATC 57.703 57.895 5.62 5.62 46.08 3.36
94 95 2.607811 ATCCTTCGGTGCTGGATCA 58.392 52.632 0.00 0.00 35.90 2.92
95 96 1.135094 ATCCTTCGGTGCTGGATCAT 58.865 50.000 0.00 0.00 35.90 2.45
96 97 0.465705 TCCTTCGGTGCTGGATCATC 59.534 55.000 0.00 0.00 0.00 2.92
97 98 0.877649 CCTTCGGTGCTGGATCATCG 60.878 60.000 0.00 0.00 41.59 3.84
98 99 1.493950 CTTCGGTGCTGGATCATCGC 61.494 60.000 0.00 0.00 40.16 4.58
99 100 3.333189 CGGTGCTGGATCATCGCG 61.333 66.667 0.00 0.00 33.59 5.87
100 101 2.106938 GGTGCTGGATCATCGCGA 59.893 61.111 13.09 13.09 0.00 5.87
101 102 1.301244 GGTGCTGGATCATCGCGAT 60.301 57.895 17.62 17.62 36.91 4.58
115 116 3.849064 CGATCTTCTCGGGAGCCT 58.151 61.111 0.00 0.00 43.82 4.58
116 117 2.119886 CGATCTTCTCGGGAGCCTT 58.880 57.895 0.00 0.00 43.82 4.35
117 118 0.031449 CGATCTTCTCGGGAGCCTTC 59.969 60.000 0.00 0.00 43.82 3.46
118 119 0.391228 GATCTTCTCGGGAGCCTTCC 59.609 60.000 0.00 0.00 43.23 3.46
119 120 0.325671 ATCTTCTCGGGAGCCTTCCA 60.326 55.000 0.00 0.00 45.98 3.53
120 121 0.544357 TCTTCTCGGGAGCCTTCCAA 60.544 55.000 0.00 0.00 45.98 3.53
121 122 0.543749 CTTCTCGGGAGCCTTCCAAT 59.456 55.000 0.00 0.00 45.98 3.16
122 123 0.541863 TTCTCGGGAGCCTTCCAATC 59.458 55.000 0.00 0.00 45.98 2.67
123 124 0.325671 TCTCGGGAGCCTTCCAATCT 60.326 55.000 0.00 0.00 45.98 2.40
124 125 0.105778 CTCGGGAGCCTTCCAATCTC 59.894 60.000 0.00 0.00 45.98 2.75
125 126 1.147153 CGGGAGCCTTCCAATCTCC 59.853 63.158 0.00 0.00 45.98 3.71
127 128 2.626510 GGAGCCTTCCAATCTCCCT 58.373 57.895 0.00 0.00 43.45 4.20
128 129 0.922626 GGAGCCTTCCAATCTCCCTT 59.077 55.000 0.00 0.00 43.45 3.95
129 130 1.286257 GGAGCCTTCCAATCTCCCTTT 59.714 52.381 0.00 0.00 43.45 3.11
130 131 2.649190 GAGCCTTCCAATCTCCCTTTC 58.351 52.381 0.00 0.00 0.00 2.62
131 132 1.286257 AGCCTTCCAATCTCCCTTTCC 59.714 52.381 0.00 0.00 0.00 3.13
132 133 1.686428 GCCTTCCAATCTCCCTTTCCC 60.686 57.143 0.00 0.00 0.00 3.97
133 134 1.063642 CCTTCCAATCTCCCTTTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
134 135 1.640670 CTTCCAATCTCCCTTTCCCCA 59.359 52.381 0.00 0.00 0.00 4.96
135 136 2.000290 TCCAATCTCCCTTTCCCCAT 58.000 50.000 0.00 0.00 0.00 4.00
136 137 1.852965 TCCAATCTCCCTTTCCCCATC 59.147 52.381 0.00 0.00 0.00 3.51
137 138 1.570501 CCAATCTCCCTTTCCCCATCA 59.429 52.381 0.00 0.00 0.00 3.07
138 139 2.659428 CAATCTCCCTTTCCCCATCAC 58.341 52.381 0.00 0.00 0.00 3.06
139 140 1.226311 ATCTCCCTTTCCCCATCACC 58.774 55.000 0.00 0.00 0.00 4.02
140 141 0.121197 TCTCCCTTTCCCCATCACCT 59.879 55.000 0.00 0.00 0.00 4.00
141 142 0.257039 CTCCCTTTCCCCATCACCTG 59.743 60.000 0.00 0.00 0.00 4.00
142 143 0.477597 TCCCTTTCCCCATCACCTGT 60.478 55.000 0.00 0.00 0.00 4.00
143 144 0.034089 CCCTTTCCCCATCACCTGTC 60.034 60.000 0.00 0.00 0.00 3.51
144 145 0.034089 CCTTTCCCCATCACCTGTCC 60.034 60.000 0.00 0.00 0.00 4.02
145 146 0.698238 CTTTCCCCATCACCTGTCCA 59.302 55.000 0.00 0.00 0.00 4.02
146 147 0.404040 TTTCCCCATCACCTGTCCAC 59.596 55.000 0.00 0.00 0.00 4.02
147 148 1.497309 TTCCCCATCACCTGTCCACC 61.497 60.000 0.00 0.00 0.00 4.61
148 149 2.268920 CCCATCACCTGTCCACCG 59.731 66.667 0.00 0.00 0.00 4.94
149 150 2.268920 CCATCACCTGTCCACCGG 59.731 66.667 0.00 0.00 0.00 5.28
150 151 2.268920 CATCACCTGTCCACCGGG 59.731 66.667 6.32 0.00 46.09 5.73
151 152 3.009115 ATCACCTGTCCACCGGGG 61.009 66.667 6.32 0.00 44.78 5.73
152 153 3.864983 ATCACCTGTCCACCGGGGT 62.865 63.158 6.32 0.00 44.78 4.95
153 154 2.465010 ATCACCTGTCCACCGGGGTA 62.465 60.000 6.32 0.00 44.78 3.69
154 155 1.993391 CACCTGTCCACCGGGGTAT 60.993 63.158 6.32 0.00 44.78 2.73
155 156 1.993391 ACCTGTCCACCGGGGTATG 60.993 63.158 6.32 0.00 44.78 2.39
156 157 1.687840 CCTGTCCACCGGGGTATGA 60.688 63.158 6.32 0.00 35.76 2.15
157 158 1.686325 CCTGTCCACCGGGGTATGAG 61.686 65.000 6.32 0.00 35.76 2.90
158 159 0.976073 CTGTCCACCGGGGTATGAGT 60.976 60.000 6.32 0.00 38.11 3.41
159 160 0.974010 TGTCCACCGGGGTATGAGTC 60.974 60.000 6.32 0.00 38.11 3.36
160 161 0.974010 GTCCACCGGGGTATGAGTCA 60.974 60.000 6.32 0.00 38.11 3.41
161 162 0.031515 TCCACCGGGGTATGAGTCAT 60.032 55.000 11.12 11.12 38.11 3.06
162 163 0.393077 CCACCGGGGTATGAGTCATC 59.607 60.000 9.42 1.56 0.00 2.92
163 164 0.393077 CACCGGGGTATGAGTCATCC 59.607 60.000 9.42 10.55 0.00 3.51
164 165 0.763223 ACCGGGGTATGAGTCATCCC 60.763 60.000 22.79 22.79 39.22 3.85
166 167 2.058675 GGGGTATGAGTCATCCCGG 58.941 63.158 23.41 0.00 40.72 5.73
167 168 1.481056 GGGGTATGAGTCATCCCGGG 61.481 65.000 16.85 16.85 40.72 5.73
168 169 0.471211 GGGTATGAGTCATCCCGGGA 60.471 60.000 29.18 29.18 0.00 5.14
169 170 0.680061 GGTATGAGTCATCCCGGGAC 59.320 60.000 29.69 14.99 35.50 4.46
170 171 0.680061 GTATGAGTCATCCCGGGACC 59.320 60.000 29.69 17.19 35.89 4.46
171 172 0.471211 TATGAGTCATCCCGGGACCC 60.471 60.000 29.69 16.78 35.89 4.46
173 174 4.393778 AGTCATCCCGGGACCCGT 62.394 66.667 29.69 7.01 46.80 5.28
174 175 4.157120 GTCATCCCGGGACCCGTG 62.157 72.222 29.69 21.02 46.80 4.94
175 176 4.707768 TCATCCCGGGACCCGTGT 62.708 66.667 29.69 13.71 46.80 4.49
176 177 4.467084 CATCCCGGGACCCGTGTG 62.467 72.222 29.69 20.89 46.80 3.82
195 196 4.760047 CCGCCGTGGGAAGGACAG 62.760 72.222 0.00 0.00 0.00 3.51
196 197 4.760047 CGCCGTGGGAAGGACAGG 62.760 72.222 0.00 0.00 0.00 4.00
197 198 3.319198 GCCGTGGGAAGGACAGGA 61.319 66.667 0.00 0.00 0.00 3.86
198 199 2.670148 GCCGTGGGAAGGACAGGAT 61.670 63.158 0.00 0.00 0.00 3.24
199 200 1.221840 CCGTGGGAAGGACAGGATG 59.778 63.158 0.00 0.00 46.00 3.51
200 201 1.264749 CCGTGGGAAGGACAGGATGA 61.265 60.000 0.00 0.00 39.69 2.92
201 202 0.176680 CGTGGGAAGGACAGGATGAG 59.823 60.000 0.00 0.00 39.69 2.90
202 203 0.543749 GTGGGAAGGACAGGATGAGG 59.456 60.000 0.00 0.00 39.69 3.86
203 204 0.621571 TGGGAAGGACAGGATGAGGG 60.622 60.000 0.00 0.00 39.69 4.30
204 205 0.326618 GGGAAGGACAGGATGAGGGA 60.327 60.000 0.00 0.00 39.69 4.20
205 206 1.584724 GGAAGGACAGGATGAGGGAA 58.415 55.000 0.00 0.00 39.69 3.97
206 207 1.488393 GGAAGGACAGGATGAGGGAAG 59.512 57.143 0.00 0.00 39.69 3.46
207 208 0.915364 AAGGACAGGATGAGGGAAGC 59.085 55.000 0.00 0.00 39.69 3.86
208 209 0.985490 AGGACAGGATGAGGGAAGCC 60.985 60.000 0.00 0.00 39.69 4.35
209 210 1.144936 GACAGGATGAGGGAAGCCG 59.855 63.158 0.00 0.00 39.69 5.52
210 211 1.306141 ACAGGATGAGGGAAGCCGA 60.306 57.895 0.00 0.00 39.69 5.54
211 212 1.333636 ACAGGATGAGGGAAGCCGAG 61.334 60.000 0.00 0.00 39.69 4.63
212 213 1.764054 AGGATGAGGGAAGCCGAGG 60.764 63.158 0.00 0.00 0.00 4.63
213 214 2.110006 GATGAGGGAAGCCGAGGC 59.890 66.667 5.89 5.89 42.33 4.70
214 215 3.468326 GATGAGGGAAGCCGAGGCC 62.468 68.421 10.95 0.00 43.17 5.19
227 228 2.122413 AGGCCCACCTCACTGACA 60.122 61.111 0.00 0.00 46.34 3.58
228 229 1.770110 AGGCCCACCTCACTGACAA 60.770 57.895 0.00 0.00 46.34 3.18
229 230 1.600916 GGCCCACCTCACTGACAAC 60.601 63.158 0.00 0.00 0.00 3.32
230 231 1.148273 GCCCACCTCACTGACAACA 59.852 57.895 0.00 0.00 0.00 3.33
231 232 0.250901 GCCCACCTCACTGACAACAT 60.251 55.000 0.00 0.00 0.00 2.71
232 233 1.527034 CCCACCTCACTGACAACATG 58.473 55.000 0.00 0.00 0.00 3.21
233 234 1.072173 CCCACCTCACTGACAACATGA 59.928 52.381 0.00 0.00 0.00 3.07
234 235 2.290514 CCCACCTCACTGACAACATGAT 60.291 50.000 0.00 0.00 0.00 2.45
235 236 2.745821 CCACCTCACTGACAACATGATG 59.254 50.000 0.00 0.00 0.00 3.07
236 237 2.745821 CACCTCACTGACAACATGATGG 59.254 50.000 7.95 0.00 0.00 3.51
237 238 1.741706 CCTCACTGACAACATGATGGC 59.258 52.381 7.95 4.72 0.00 4.40
238 239 1.395954 CTCACTGACAACATGATGGCG 59.604 52.381 7.95 3.79 0.00 5.69
239 240 0.448990 CACTGACAACATGATGGCGG 59.551 55.000 15.72 15.72 40.76 6.13
240 241 0.036732 ACTGACAACATGATGGCGGT 59.963 50.000 17.11 17.11 43.23 5.68
241 242 0.448990 CTGACAACATGATGGCGGTG 59.551 55.000 9.46 0.00 29.53 4.94
242 243 0.959867 TGACAACATGATGGCGGTGG 60.960 55.000 7.95 0.00 0.00 4.61
243 244 0.676466 GACAACATGATGGCGGTGGA 60.676 55.000 7.95 0.00 0.00 4.02
244 245 0.677731 ACAACATGATGGCGGTGGAG 60.678 55.000 7.95 0.00 0.00 3.86
245 246 1.077501 AACATGATGGCGGTGGAGG 60.078 57.895 0.00 0.00 0.00 4.30
246 247 2.903855 CATGATGGCGGTGGAGGC 60.904 66.667 0.00 0.00 37.19 4.70
247 248 4.552365 ATGATGGCGGTGGAGGCG 62.552 66.667 0.00 0.00 39.82 5.52
285 286 4.082523 GCAGGCACCCGCAGAGTA 62.083 66.667 0.00 0.00 41.24 2.59
286 287 2.185350 CAGGCACCCGCAGAGTAG 59.815 66.667 0.00 0.00 41.24 2.57
287 288 3.077556 AGGCACCCGCAGAGTAGG 61.078 66.667 0.00 0.00 41.24 3.18
288 289 4.840005 GGCACCCGCAGAGTAGGC 62.840 72.222 0.00 0.00 41.24 3.93
289 290 4.082523 GCACCCGCAGAGTAGGCA 62.083 66.667 0.00 0.00 38.36 4.75
290 291 2.662596 CACCCGCAGAGTAGGCAA 59.337 61.111 0.00 0.00 0.00 4.52
291 292 1.741770 CACCCGCAGAGTAGGCAAC 60.742 63.158 0.00 0.00 0.00 4.17
292 293 2.125106 CCCGCAGAGTAGGCAACC 60.125 66.667 0.00 0.00 37.17 3.77
293 294 2.662596 CCGCAGAGTAGGCAACCA 59.337 61.111 0.00 0.00 37.17 3.67
294 295 1.221840 CCGCAGAGTAGGCAACCAT 59.778 57.895 0.00 0.00 37.17 3.55
295 296 0.811616 CCGCAGAGTAGGCAACCATC 60.812 60.000 0.00 0.00 37.17 3.51
296 297 1.148157 CGCAGAGTAGGCAACCATCG 61.148 60.000 0.00 0.00 37.17 3.84
297 298 0.811616 GCAGAGTAGGCAACCATCGG 60.812 60.000 0.00 0.00 37.17 4.18
298 299 0.811616 CAGAGTAGGCAACCATCGGC 60.812 60.000 0.00 0.00 37.17 5.54
299 300 1.883084 GAGTAGGCAACCATCGGCG 60.883 63.158 0.00 0.00 37.17 6.46
300 301 2.125269 GTAGGCAACCATCGGCGT 60.125 61.111 6.85 0.00 37.17 5.68
301 302 2.171725 GTAGGCAACCATCGGCGTC 61.172 63.158 6.85 0.00 37.17 5.19
302 303 2.355986 TAGGCAACCATCGGCGTCT 61.356 57.895 6.85 0.00 37.17 4.18
303 304 2.572095 TAGGCAACCATCGGCGTCTG 62.572 60.000 6.85 6.00 37.17 3.51
304 305 4.166011 GCAACCATCGGCGTCTGC 62.166 66.667 6.85 6.25 41.71 4.26
305 306 2.741985 CAACCATCGGCGTCTGCA 60.742 61.111 6.85 0.00 45.35 4.41
306 307 2.742372 AACCATCGGCGTCTGCAC 60.742 61.111 6.85 0.00 45.35 4.57
307 308 3.240134 AACCATCGGCGTCTGCACT 62.240 57.895 6.85 0.00 45.35 4.40
308 309 3.190849 CCATCGGCGTCTGCACTG 61.191 66.667 6.85 0.00 45.35 3.66
309 310 2.433145 CATCGGCGTCTGCACTGT 60.433 61.111 6.85 0.00 45.35 3.55
310 311 1.153842 CATCGGCGTCTGCACTGTA 60.154 57.895 6.85 0.00 45.35 2.74
311 312 0.735978 CATCGGCGTCTGCACTGTAA 60.736 55.000 6.85 0.00 45.35 2.41
312 313 0.037697 ATCGGCGTCTGCACTGTAAA 60.038 50.000 6.85 0.00 45.35 2.01
313 314 0.249531 TCGGCGTCTGCACTGTAAAA 60.250 50.000 6.85 0.00 45.35 1.52
314 315 0.584396 CGGCGTCTGCACTGTAAAAA 59.416 50.000 0.00 0.00 45.35 1.94
335 336 2.127758 CGCAACGGAGAAACACGC 60.128 61.111 0.00 0.00 0.00 5.34
336 337 2.127758 GCAACGGAGAAACACGCG 60.128 61.111 3.53 3.53 0.00 6.01
337 338 2.127758 CAACGGAGAAACACGCGC 60.128 61.111 5.73 0.00 0.00 6.86
338 339 3.698463 AACGGAGAAACACGCGCG 61.698 61.111 30.96 30.96 0.00 6.86
357 358 3.515286 CCTCGCCCGAGACGCTAA 61.515 66.667 18.41 0.00 44.53 3.09
358 359 2.722487 CTCGCCCGAGACGCTAAT 59.278 61.111 12.04 0.00 44.53 1.73
359 360 1.658717 CTCGCCCGAGACGCTAATG 60.659 63.158 12.04 0.00 44.53 1.90
360 361 3.330853 CGCCCGAGACGCTAATGC 61.331 66.667 0.00 0.00 0.00 3.56
361 362 2.107141 GCCCGAGACGCTAATGCT 59.893 61.111 0.00 0.00 36.97 3.79
362 363 1.362717 GCCCGAGACGCTAATGCTA 59.637 57.895 0.00 0.00 36.97 3.49
363 364 0.940047 GCCCGAGACGCTAATGCTAC 60.940 60.000 0.00 0.00 36.97 3.58
364 365 0.384309 CCCGAGACGCTAATGCTACA 59.616 55.000 0.00 0.00 36.97 2.74
365 366 1.478137 CCGAGACGCTAATGCTACAC 58.522 55.000 0.00 0.00 36.97 2.90
366 367 1.113253 CGAGACGCTAATGCTACACG 58.887 55.000 0.00 0.00 36.97 4.49
367 368 1.267882 CGAGACGCTAATGCTACACGA 60.268 52.381 0.00 0.00 36.97 4.35
368 369 2.602456 CGAGACGCTAATGCTACACGAT 60.602 50.000 0.00 0.00 36.97 3.73
369 370 3.372954 GAGACGCTAATGCTACACGATT 58.627 45.455 0.00 0.00 36.97 3.34
370 371 4.534168 GAGACGCTAATGCTACACGATTA 58.466 43.478 0.00 0.00 36.97 1.75
371 372 4.288531 AGACGCTAATGCTACACGATTAC 58.711 43.478 0.00 0.00 36.97 1.89
372 373 4.036567 ACGCTAATGCTACACGATTACA 57.963 40.909 0.00 0.00 36.97 2.41
373 374 3.795101 ACGCTAATGCTACACGATTACAC 59.205 43.478 0.00 0.00 36.97 2.90
374 375 3.794564 CGCTAATGCTACACGATTACACA 59.205 43.478 0.00 0.00 36.97 3.72
375 376 4.266739 CGCTAATGCTACACGATTACACAA 59.733 41.667 0.00 0.00 36.97 3.33
376 377 5.490213 GCTAATGCTACACGATTACACAAC 58.510 41.667 0.00 0.00 36.03 3.32
377 378 5.291128 GCTAATGCTACACGATTACACAACT 59.709 40.000 0.00 0.00 36.03 3.16
378 379 5.779806 AATGCTACACGATTACACAACTC 57.220 39.130 0.00 0.00 0.00 3.01
379 380 3.239254 TGCTACACGATTACACAACTCG 58.761 45.455 0.00 0.00 38.34 4.18
380 381 3.240069 GCTACACGATTACACAACTCGT 58.760 45.455 0.00 0.00 45.73 4.18
381 382 4.083377 TGCTACACGATTACACAACTCGTA 60.083 41.667 0.00 0.00 43.21 3.43
382 383 5.032863 GCTACACGATTACACAACTCGTAT 58.967 41.667 0.00 0.00 43.21 3.06
383 384 5.170981 GCTACACGATTACACAACTCGTATC 59.829 44.000 0.00 0.00 43.21 2.24
384 385 5.306532 ACACGATTACACAACTCGTATCT 57.693 39.130 0.00 0.00 43.21 1.98
385 386 5.093457 ACACGATTACACAACTCGTATCTG 58.907 41.667 0.00 0.00 43.21 2.90
386 387 5.093457 CACGATTACACAACTCGTATCTGT 58.907 41.667 0.00 0.00 43.21 3.41
387 388 5.571741 CACGATTACACAACTCGTATCTGTT 59.428 40.000 0.00 0.00 43.21 3.16
388 389 5.798934 ACGATTACACAACTCGTATCTGTTC 59.201 40.000 0.00 0.00 43.25 3.18
389 390 5.798434 CGATTACACAACTCGTATCTGTTCA 59.202 40.000 0.00 0.00 0.00 3.18
390 391 6.307077 CGATTACACAACTCGTATCTGTTCAA 59.693 38.462 0.00 0.00 0.00 2.69
391 392 7.009265 CGATTACACAACTCGTATCTGTTCAAT 59.991 37.037 0.00 0.00 0.00 2.57
392 393 9.297586 GATTACACAACTCGTATCTGTTCAATA 57.702 33.333 0.00 0.00 0.00 1.90
393 394 9.647797 ATTACACAACTCGTATCTGTTCAATAA 57.352 29.630 0.00 0.00 0.00 1.40
394 395 7.956420 ACACAACTCGTATCTGTTCAATAAA 57.044 32.000 0.00 0.00 0.00 1.40
395 396 8.373048 ACACAACTCGTATCTGTTCAATAAAA 57.627 30.769 0.00 0.00 0.00 1.52
396 397 8.999431 ACACAACTCGTATCTGTTCAATAAAAT 58.001 29.630 0.00 0.00 0.00 1.82
397 398 9.825972 CACAACTCGTATCTGTTCAATAAAATT 57.174 29.630 0.00 0.00 0.00 1.82
417 418 6.944557 AATTAGTTTACATTTTTCGCTGCC 57.055 33.333 0.00 0.00 0.00 4.85
418 419 2.928694 AGTTTACATTTTTCGCTGCCG 58.071 42.857 0.00 0.00 0.00 5.69
419 420 2.292292 AGTTTACATTTTTCGCTGCCGT 59.708 40.909 0.00 0.00 35.54 5.68
420 421 3.499157 AGTTTACATTTTTCGCTGCCGTA 59.501 39.130 0.00 0.00 35.54 4.02
421 422 4.023878 AGTTTACATTTTTCGCTGCCGTAA 60.024 37.500 0.00 0.00 35.54 3.18
422 423 4.485024 TTACATTTTTCGCTGCCGTAAA 57.515 36.364 0.00 0.00 32.98 2.01
423 424 3.357166 ACATTTTTCGCTGCCGTAAAA 57.643 38.095 9.75 9.75 44.05 1.52
424 425 3.707793 ACATTTTTCGCTGCCGTAAAAA 58.292 36.364 13.69 13.69 43.47 1.94
425 426 3.487942 ACATTTTTCGCTGCCGTAAAAAC 59.512 39.130 13.63 0.00 43.47 2.43
426 427 2.846039 TTTTCGCTGCCGTAAAAACA 57.154 40.000 0.00 0.00 32.11 2.83
427 428 2.392933 TTTCGCTGCCGTAAAAACAG 57.607 45.000 0.00 0.00 35.54 3.16
428 429 1.584175 TTCGCTGCCGTAAAAACAGA 58.416 45.000 0.00 0.00 33.10 3.41
429 430 0.863144 TCGCTGCCGTAAAAACAGAC 59.137 50.000 0.00 0.00 33.10 3.51
430 431 0.584396 CGCTGCCGTAAAAACAGACA 59.416 50.000 0.00 0.00 33.10 3.41
431 432 1.659211 CGCTGCCGTAAAAACAGACAC 60.659 52.381 0.00 0.00 33.10 3.67
432 433 1.332375 GCTGCCGTAAAAACAGACACA 59.668 47.619 0.00 0.00 33.10 3.72
433 434 2.031157 GCTGCCGTAAAAACAGACACAT 60.031 45.455 0.00 0.00 33.10 3.21
434 435 3.554524 CTGCCGTAAAAACAGACACATG 58.445 45.455 0.00 0.00 33.10 3.21
435 436 2.292016 TGCCGTAAAAACAGACACATGG 59.708 45.455 0.00 0.00 0.00 3.66
436 437 2.550606 GCCGTAAAAACAGACACATGGA 59.449 45.455 0.00 0.00 0.00 3.41
437 438 3.003897 GCCGTAAAAACAGACACATGGAA 59.996 43.478 0.00 0.00 0.00 3.53
438 439 4.498345 GCCGTAAAAACAGACACATGGAAA 60.498 41.667 0.00 0.00 0.00 3.13
439 440 5.583495 CCGTAAAAACAGACACATGGAAAA 58.417 37.500 0.00 0.00 0.00 2.29
440 441 6.212955 CCGTAAAAACAGACACATGGAAAAT 58.787 36.000 0.00 0.00 0.00 1.82
441 442 6.362283 CCGTAAAAACAGACACATGGAAAATC 59.638 38.462 0.00 0.00 0.00 2.17
442 443 6.915300 CGTAAAAACAGACACATGGAAAATCA 59.085 34.615 0.00 0.00 0.00 2.57
443 444 7.594758 CGTAAAAACAGACACATGGAAAATCAT 59.405 33.333 0.00 0.00 0.00 2.45
444 445 9.906660 GTAAAAACAGACACATGGAAAATCATA 57.093 29.630 0.00 0.00 0.00 2.15
446 447 8.991243 AAAACAGACACATGGAAAATCATATG 57.009 30.769 0.00 0.00 0.00 1.78
447 448 7.707624 AACAGACACATGGAAAATCATATGT 57.292 32.000 1.90 0.00 37.47 2.29
451 452 4.292599 CACATGGAAAATCATATGTGCGG 58.707 43.478 1.90 0.00 42.43 5.69
452 453 4.036616 CACATGGAAAATCATATGTGCGGA 59.963 41.667 1.90 0.00 42.43 5.54
453 454 4.276678 ACATGGAAAATCATATGTGCGGAG 59.723 41.667 1.90 0.00 32.90 4.63
454 455 4.149511 TGGAAAATCATATGTGCGGAGA 57.850 40.909 1.90 0.00 0.00 3.71
455 456 3.876914 TGGAAAATCATATGTGCGGAGAC 59.123 43.478 1.90 0.00 0.00 3.36
469 470 1.471119 GGAGACGGTGATCCTACACA 58.529 55.000 0.00 0.00 41.88 3.72
470 471 2.032620 GGAGACGGTGATCCTACACAT 58.967 52.381 0.00 0.00 41.88 3.21
471 472 2.223829 GGAGACGGTGATCCTACACATG 60.224 54.545 0.00 0.00 41.88 3.21
472 473 2.427453 GAGACGGTGATCCTACACATGT 59.573 50.000 0.00 0.00 41.88 3.21
473 474 3.628008 AGACGGTGATCCTACACATGTA 58.372 45.455 0.00 0.00 41.88 2.29
474 475 3.380637 AGACGGTGATCCTACACATGTAC 59.619 47.826 0.00 0.00 41.88 2.90
475 476 2.429610 ACGGTGATCCTACACATGTACC 59.570 50.000 0.00 0.00 41.88 3.34
476 477 2.693591 CGGTGATCCTACACATGTACCT 59.306 50.000 0.00 0.00 41.88 3.08
477 478 3.243434 CGGTGATCCTACACATGTACCTC 60.243 52.174 0.00 0.00 41.88 3.85
478 479 3.069729 GGTGATCCTACACATGTACCTCC 59.930 52.174 0.00 0.00 41.88 4.30
479 480 3.704566 GTGATCCTACACATGTACCTCCA 59.295 47.826 0.00 0.00 40.11 3.86
480 481 4.161565 GTGATCCTACACATGTACCTCCAA 59.838 45.833 0.00 0.00 40.11 3.53
481 482 4.780554 TGATCCTACACATGTACCTCCAAA 59.219 41.667 0.00 0.00 0.00 3.28
482 483 5.249622 TGATCCTACACATGTACCTCCAAAA 59.750 40.000 0.00 0.00 0.00 2.44
483 484 5.570205 TCCTACACATGTACCTCCAAAAA 57.430 39.130 0.00 0.00 0.00 1.94
507 508 8.798859 AAAAGATGCTACACATTTCTACATCT 57.201 30.769 0.00 0.00 43.32 2.90
508 509 9.890629 AAAAGATGCTACACATTTCTACATCTA 57.109 29.630 0.00 0.00 41.28 1.98
510 511 9.703892 AAGATGCTACACATTTCTACATCTATC 57.296 33.333 0.00 0.00 41.28 2.08
511 512 9.087871 AGATGCTACACATTTCTACATCTATCT 57.912 33.333 0.00 0.00 40.58 1.98
514 515 9.131791 TGCTACACATTTCTACATCTATCTACA 57.868 33.333 0.00 0.00 0.00 2.74
540 541 6.418057 TGATAAAACATGAAAACAAGGCCT 57.582 33.333 0.00 0.00 0.00 5.19
541 542 6.222389 TGATAAAACATGAAAACAAGGCCTG 58.778 36.000 5.69 2.82 0.00 4.85
548 549 4.046286 TGAAAACAAGGCCTGATATGGT 57.954 40.909 5.69 0.00 0.00 3.55
554 555 2.097110 AGGCCTGATATGGTAACCGA 57.903 50.000 3.11 0.00 0.00 4.69
555 556 2.404559 AGGCCTGATATGGTAACCGAA 58.595 47.619 3.11 0.00 0.00 4.30
558 559 4.141251 AGGCCTGATATGGTAACCGAAAAT 60.141 41.667 3.11 0.00 0.00 1.82
563 564 6.765989 CCTGATATGGTAACCGAAAATGAGAA 59.234 38.462 0.00 0.00 0.00 2.87
567 568 5.699097 TGGTAACCGAAAATGAGAAAAGG 57.301 39.130 0.00 0.00 0.00 3.11
570 571 6.321690 TGGTAACCGAAAATGAGAAAAGGAAA 59.678 34.615 0.00 0.00 0.00 3.13
571 572 7.014808 TGGTAACCGAAAATGAGAAAAGGAAAT 59.985 33.333 0.00 0.00 0.00 2.17
599 604 0.108615 AGATTTGGCGAGGAGTGACG 60.109 55.000 0.00 0.00 0.00 4.35
605 610 2.504244 CGAGGAGTGACGGCGAAC 60.504 66.667 16.62 11.90 0.00 3.95
619 624 2.372690 CGAACGGCTGTCACTTCGG 61.373 63.158 9.20 0.00 33.46 4.30
625 630 2.029844 GCTGTCACTTCGGCTGGAC 61.030 63.158 0.00 0.00 36.83 4.02
633 638 0.613777 CTTCGGCTGGACTTTAGGGT 59.386 55.000 0.00 0.00 0.00 4.34
637 642 0.696501 GGCTGGACTTTAGGGTGGAA 59.303 55.000 0.00 0.00 0.00 3.53
638 643 1.613520 GGCTGGACTTTAGGGTGGAAC 60.614 57.143 0.00 0.00 0.00 3.62
641 646 2.372172 CTGGACTTTAGGGTGGAACAGT 59.628 50.000 0.00 0.00 41.80 3.55
642 647 2.370849 TGGACTTTAGGGTGGAACAGTC 59.629 50.000 0.00 0.00 41.80 3.51
643 648 2.370849 GGACTTTAGGGTGGAACAGTCA 59.629 50.000 0.00 0.00 41.80 3.41
644 649 3.557264 GGACTTTAGGGTGGAACAGTCAG 60.557 52.174 0.00 0.00 41.80 3.51
645 650 2.224548 ACTTTAGGGTGGAACAGTCAGC 60.225 50.000 0.00 0.00 41.80 4.26
646 651 1.429930 TTAGGGTGGAACAGTCAGCA 58.570 50.000 0.00 0.00 41.80 4.41
648 653 1.302832 GGGTGGAACAGTCAGCAGG 60.303 63.158 0.00 0.00 41.80 4.85
649 654 1.968540 GGTGGAACAGTCAGCAGGC 60.969 63.158 0.00 0.00 41.80 4.85
650 655 1.227943 GTGGAACAGTCAGCAGGCA 60.228 57.895 0.00 0.00 41.80 4.75
658 665 2.686470 TCAGCAGGCAGGGGAGAG 60.686 66.667 0.00 0.00 0.00 3.20
673 680 3.963793 AGAGCCATCTCAGGATCCA 57.036 52.632 15.82 0.00 45.09 3.41
674 681 2.419457 AGAGCCATCTCAGGATCCAT 57.581 50.000 15.82 0.00 45.09 3.41
675 682 2.259012 AGAGCCATCTCAGGATCCATC 58.741 52.381 15.82 0.00 45.09 3.51
676 683 3.092992 AGAGCCATCTCAGGATCCATCC 61.093 54.545 15.82 0.00 45.09 3.51
692 699 0.955752 ATCCTCCCTCATTCCCCTCT 59.044 55.000 0.00 0.00 0.00 3.69
694 701 0.766288 CCTCCCTCATTCCCCTCTCC 60.766 65.000 0.00 0.00 0.00 3.71
695 702 1.075226 TCCCTCATTCCCCTCTCCG 60.075 63.158 0.00 0.00 0.00 4.63
697 704 0.983378 CCCTCATTCCCCTCTCCGTT 60.983 60.000 0.00 0.00 0.00 4.44
698 705 0.179000 CCTCATTCCCCTCTCCGTTG 59.821 60.000 0.00 0.00 0.00 4.10
699 706 0.462759 CTCATTCCCCTCTCCGTTGC 60.463 60.000 0.00 0.00 0.00 4.17
700 707 1.815421 CATTCCCCTCTCCGTTGCG 60.815 63.158 0.00 0.00 0.00 4.85
767 779 4.090057 GCCTGCCGCGACTTTGAC 62.090 66.667 8.23 0.00 0.00 3.18
769 781 3.423154 CTGCCGCGACTTTGACCC 61.423 66.667 8.23 0.00 0.00 4.46
827 860 1.444250 CATGATTGGGTGCATGGCC 59.556 57.895 0.00 0.00 38.52 5.36
828 861 1.046472 CATGATTGGGTGCATGGCCT 61.046 55.000 3.32 0.00 38.52 5.19
829 862 0.557238 ATGATTGGGTGCATGGCCTA 59.443 50.000 3.32 0.00 0.00 3.93
830 863 0.106569 TGATTGGGTGCATGGCCTAG 60.107 55.000 3.32 0.00 0.00 3.02
831 864 1.456331 ATTGGGTGCATGGCCTAGC 60.456 57.895 3.32 8.87 0.00 3.42
857 890 3.007920 CTGTCTGCCCTCTGCCCT 61.008 66.667 0.00 0.00 40.16 5.19
858 891 3.324930 TGTCTGCCCTCTGCCCTG 61.325 66.667 0.00 0.00 40.16 4.45
896 929 0.833834 CCTCACTCACCCAGTCCACT 60.834 60.000 0.00 0.00 30.26 4.00
910 943 1.216710 CCACTTGACTCGCTCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
914 947 1.671901 CTTGACTCGCTCCTCCCCTC 61.672 65.000 0.00 0.00 0.00 4.30
948 981 1.831652 CGGAGCAGGTGAGGAGGTTT 61.832 60.000 0.00 0.00 0.00 3.27
961 996 0.592754 GAGGTTTCTCTCGCCGATCG 60.593 60.000 8.51 8.51 37.07 3.69
1000 1039 3.936203 AGCGCCGGTTTGTCTCCA 61.936 61.111 2.29 0.00 0.00 3.86
1010 1049 4.755123 CCGGTTTGTCTCCATGTATATTCC 59.245 45.833 0.00 0.00 0.00 3.01
1012 1051 5.696724 CGGTTTGTCTCCATGTATATTCCTC 59.303 44.000 0.00 0.00 0.00 3.71
1019 1058 3.576982 TCCATGTATATTCCTCCGTGTCC 59.423 47.826 0.00 0.00 0.00 4.02
1026 1065 3.790089 ATTCCTCCGTGTCCTTTTCTT 57.210 42.857 0.00 0.00 0.00 2.52
1035 1078 3.317993 CGTGTCCTTTTCTTTTGATGGGT 59.682 43.478 0.00 0.00 0.00 4.51
1044 1087 4.935352 TCTTTTGATGGGTTTCCTGTTG 57.065 40.909 0.00 0.00 0.00 3.33
1118 1170 1.321074 CGAGTTAAGAGGGGGCGTCT 61.321 60.000 0.00 0.00 0.00 4.18
1139 1195 1.694525 GGGGAGGAGGAAGGGGAAG 60.695 68.421 0.00 0.00 0.00 3.46
1140 1196 1.694525 GGGAGGAGGAAGGGGAAGG 60.695 68.421 0.00 0.00 0.00 3.46
1141 1197 1.694525 GGAGGAGGAAGGGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
1263 1327 4.019858 GAGATGGATCGTAGATGGATGGA 58.980 47.826 0.00 0.00 45.12 3.41
1264 1328 3.766591 AGATGGATCGTAGATGGATGGAC 59.233 47.826 0.00 0.00 45.12 4.02
1267 1350 0.603569 ATCGTAGATGGATGGACGGC 59.396 55.000 0.00 0.00 45.12 5.68
1303 1390 2.362889 CGCCCCCATTGCCTTCTT 60.363 61.111 0.00 0.00 0.00 2.52
1304 1391 1.077068 CGCCCCCATTGCCTTCTTA 60.077 57.895 0.00 0.00 0.00 2.10
1305 1392 1.384222 CGCCCCCATTGCCTTCTTAC 61.384 60.000 0.00 0.00 0.00 2.34
1306 1393 1.043116 GCCCCCATTGCCTTCTTACC 61.043 60.000 0.00 0.00 0.00 2.85
1307 1394 0.631212 CCCCCATTGCCTTCTTACCT 59.369 55.000 0.00 0.00 0.00 3.08
1310 1397 2.648059 CCCATTGCCTTCTTACCTCTG 58.352 52.381 0.00 0.00 0.00 3.35
1315 1402 1.522569 CCTTCTTACCTCTGGCCGG 59.477 63.158 4.71 4.71 0.00 6.13
1316 1403 0.976073 CCTTCTTACCTCTGGCCGGA 60.976 60.000 15.16 15.16 0.00 5.14
1389 1496 2.124151 GTGATCCCCGCTGGCATT 60.124 61.111 0.00 0.00 0.00 3.56
1434 1541 1.677217 GCCTGTGTTCAGAGGTGGATC 60.677 57.143 15.61 0.00 43.76 3.36
1478 1590 1.689273 GTGTCCTGACTGTCCTCTTGT 59.311 52.381 5.17 0.00 0.00 3.16
1507 1619 0.037139 GCATGTGCCTGATGCCAAAA 60.037 50.000 0.00 0.00 40.37 2.44
1508 1620 1.406341 GCATGTGCCTGATGCCAAAAT 60.406 47.619 0.00 0.00 40.37 1.82
1513 1625 2.094078 GTGCCTGATGCCAAAATGCTTA 60.094 45.455 0.00 0.00 40.16 3.09
1524 1636 3.551863 CCAAAATGCTTAGTTGTTGCCGA 60.552 43.478 0.00 0.00 0.00 5.54
1535 1655 4.980805 TTGCCGAGCACCCACGAC 62.981 66.667 0.00 0.00 38.71 4.34
1550 1670 1.391485 CACGACAGCGAAATTCAGGAG 59.609 52.381 0.00 0.00 41.64 3.69
1656 1777 1.512735 GGGAGCAGAGGGGATAAACT 58.487 55.000 0.00 0.00 0.00 2.66
1670 1792 5.013599 GGGGATAAACTAGATGAGATTGGCT 59.986 44.000 0.00 0.00 0.00 4.75
1867 1990 5.593909 TGGAGTGAAATGATATTCCGCATTT 59.406 36.000 0.00 0.00 44.74 2.32
1904 2027 2.224606 CTATACATGTGCTTGCAGGGG 58.775 52.381 9.11 0.00 0.00 4.79
1917 2040 0.108186 GCAGGGGCCATTAGTTTTGC 60.108 55.000 4.39 0.00 0.00 3.68
1963 2086 7.905493 CGAAGATAAGATTAGTTTGTTTGGCTC 59.095 37.037 0.00 0.00 0.00 4.70
1984 2107 2.368875 CTGTTGGAGGTGTTCTAGGTGT 59.631 50.000 0.00 0.00 0.00 4.16
1985 2108 3.576982 CTGTTGGAGGTGTTCTAGGTGTA 59.423 47.826 0.00 0.00 0.00 2.90
1986 2109 3.322828 TGTTGGAGGTGTTCTAGGTGTAC 59.677 47.826 0.00 0.00 0.00 2.90
1987 2110 3.537795 TGGAGGTGTTCTAGGTGTACT 57.462 47.619 0.00 0.00 0.00 2.73
2028 2151 9.617975 GGAAAAAGTTCATTCAGACATAAAGAG 57.382 33.333 4.37 0.00 35.25 2.85
2042 2165 8.233190 CAGACATAAAGAGTGATTTTGTTCTCC 58.767 37.037 0.00 0.00 0.00 3.71
2063 2186 0.601046 TGAGGCGTTGTTCTGCTCTG 60.601 55.000 0.00 0.00 0.00 3.35
2123 2246 1.339291 GAAGCCTGCTTGCAACTCTTT 59.661 47.619 9.48 0.00 36.26 2.52
2161 2284 5.046910 TGTTGCTGCTAGTATTTTGCTTC 57.953 39.130 0.00 0.00 0.00 3.86
2181 2304 4.857871 TCGGTTATTTCAAATCTGCGAG 57.142 40.909 0.00 0.00 0.00 5.03
2203 2326 1.995484 ACGCGATGACTTCTGACATTG 59.005 47.619 15.93 0.00 34.41 2.82
2313 2439 4.774503 TGCGCGGACATGGCATCA 62.775 61.111 8.83 0.00 0.00 3.07
2328 2454 0.179119 CATCAACCGTCTACCGTCCC 60.179 60.000 0.00 0.00 33.66 4.46
2506 2632 2.694628 AGTCTGATCAGCCATCTCACTC 59.305 50.000 18.36 0.00 31.92 3.51
2559 2685 4.579340 GGATCTCCGGTAATATATCTCGCA 59.421 45.833 0.00 0.00 0.00 5.10
3015 3179 2.539302 CCATTTGGTGGGATTGGTTCT 58.461 47.619 0.00 0.00 44.79 3.01
3027 3191 6.377146 GTGGGATTGGTTCTATAACAACACAT 59.623 38.462 0.00 0.00 37.34 3.21
3068 3232 5.402398 CATCTTGTCGAGTTGATGTACTCA 58.598 41.667 11.20 0.00 43.79 3.41
3252 3416 1.804151 GCCAAGTTATTGTCGAGCACA 59.196 47.619 0.00 0.00 34.39 4.57
3383 3547 9.038072 TCTTAGTGTTATACCTGTTTATGTCCA 57.962 33.333 0.00 0.00 0.00 4.02
3393 3557 7.833285 ACCTGTTTATGTCCATTTTTACACT 57.167 32.000 0.00 0.00 0.00 3.55
3412 3576 1.227943 GCTGTGTCTTGGGAGCACA 60.228 57.895 0.00 0.00 37.49 4.57
3457 3621 8.472413 AGTTCTTGCAATATAATTTCACATGCT 58.528 29.630 0.00 0.00 33.66 3.79
3589 3753 6.813649 CACACTATGTTAGTACAGATTGCAGT 59.186 38.462 0.00 0.00 37.77 4.40
3602 3766 5.215160 CAGATTGCAGTTAACCAGTTGAAC 58.785 41.667 0.88 0.00 0.00 3.18
3603 3767 3.684103 TTGCAGTTAACCAGTTGAACG 57.316 42.857 0.88 0.00 0.00 3.95
3612 3776 8.126700 CAGTTAACCAGTTGAACGAATTTACTT 58.873 33.333 0.88 0.00 0.00 2.24
3615 3779 6.687081 ACCAGTTGAACGAATTTACTTTCA 57.313 33.333 0.00 0.00 0.00 2.69
3616 3780 7.090953 ACCAGTTGAACGAATTTACTTTCAA 57.909 32.000 0.00 0.00 36.30 2.69
3657 3821 3.251479 ACTGCTTACGATGAGATGCAA 57.749 42.857 0.00 0.00 0.00 4.08
3705 3869 9.767684 TTGTGTTAATTCAGAATATTGCTAACG 57.232 29.630 0.00 0.00 0.00 3.18
3716 3880 8.004344 CAGAATATTGCTAACGTTATGTACTGC 58.996 37.037 8.76 8.16 0.00 4.40
3724 3888 6.900299 GCTAACGTTATGTACTGCTTGAAATC 59.100 38.462 8.76 0.00 0.00 2.17
3725 3889 5.450376 ACGTTATGTACTGCTTGAAATCG 57.550 39.130 0.00 0.00 0.00 3.34
3733 3897 7.987268 TGTACTGCTTGAAATCGAACTATAG 57.013 36.000 0.00 0.00 0.00 1.31
3753 3917 9.375974 ACTATAGCCTAGTTATTTGGATGTACA 57.624 33.333 0.00 0.00 0.00 2.90
3768 3932 7.575414 TGGATGTACAATACACAACAGTTTT 57.425 32.000 0.00 0.00 42.23 2.43
3825 3989 5.505181 AATCTGTCCTGGTAATGTTCACT 57.495 39.130 0.00 0.00 0.00 3.41
3826 3990 4.974645 TCTGTCCTGGTAATGTTCACTT 57.025 40.909 0.00 0.00 0.00 3.16
3830 3994 5.441500 TGTCCTGGTAATGTTCACTTGAAA 58.558 37.500 0.00 0.00 35.58 2.69
3943 4107 5.255397 TCAAAAGTGGTTGGGATGAGTAT 57.745 39.130 0.00 0.00 0.00 2.12
4000 4164 3.340928 CATCAGCAACATCACAGGAGAA 58.659 45.455 0.00 0.00 0.00 2.87
4015 4179 4.660938 GAAACAGGGGGCGGTGCT 62.661 66.667 0.00 0.00 0.00 4.40
4066 4230 0.603975 GCATATCTGAAGTCCGGGCC 60.604 60.000 0.08 0.00 0.00 5.80
4069 4233 1.107538 TATCTGAAGTCCGGGCCGAG 61.108 60.000 30.79 17.99 0.00 4.63
4084 4248 2.114670 CGAGGGCATCCGCATTGTT 61.115 57.895 0.00 0.00 41.24 2.83
4156 4320 4.644103 TGTAAGGAACGTCTACATAGCC 57.356 45.455 0.00 0.00 0.00 3.93
4157 4321 2.865343 AAGGAACGTCTACATAGCCG 57.135 50.000 0.00 0.00 0.00 5.52
4236 4400 8.611757 CGAACATCCTGATAACAATTATGACAA 58.388 33.333 0.00 0.00 0.00 3.18
4279 4443 3.908382 GCAACATCACAATTGAGAACGTC 59.092 43.478 13.59 0.00 34.35 4.34
4402 4566 1.062587 CATCCGTGGAATTGTTCGCTC 59.937 52.381 0.00 0.00 0.00 5.03
4465 4630 4.454678 AGCAACTCAGAACAGATTGTGAA 58.545 39.130 0.00 0.00 37.63 3.18
4707 4873 7.410800 TGCTTAGAATGCAATTTGTTTCTTG 57.589 32.000 16.57 12.69 36.07 3.02
4708 4874 6.985645 TGCTTAGAATGCAATTTGTTTCTTGT 59.014 30.769 16.57 2.83 36.07 3.16
4709 4875 8.140628 TGCTTAGAATGCAATTTGTTTCTTGTA 58.859 29.630 16.57 10.20 36.07 2.41
4710 4876 8.427774 GCTTAGAATGCAATTTGTTTCTTGTAC 58.572 33.333 16.57 0.00 36.07 2.90
4752 4919 2.478134 CAGTGCTAGCTTGTTCTGTCAC 59.522 50.000 17.23 1.12 0.00 3.67
4896 5064 2.743636 TTGTGAGTAGGCTTCCTTCG 57.256 50.000 0.00 0.00 34.61 3.79
4916 5084 3.812609 TCGTTGCAAGTTGAATAGCAAGA 59.187 39.130 7.16 0.92 46.32 3.02
4921 5089 6.088016 TGCAAGTTGAATAGCAAGAAATGT 57.912 33.333 7.16 0.00 37.12 2.71
4971 5139 7.530426 AGGAAACTCACTTTTATGAAATGCT 57.470 32.000 0.00 0.00 32.90 3.79
4973 5141 7.014615 AGGAAACTCACTTTTATGAAATGCTGT 59.985 33.333 0.00 0.00 32.90 4.40
4975 5143 9.846248 GAAACTCACTTTTATGAAATGCTGTAT 57.154 29.630 0.00 0.00 0.00 2.29
5040 5374 9.381033 CTGATGATGAAGATCTTATTATCACCC 57.619 37.037 21.98 18.25 0.00 4.61
5048 5391 9.807921 GAAGATCTTATTATCACCCCCAAATTA 57.192 33.333 8.25 0.00 0.00 1.40
5049 5392 9.813826 AAGATCTTATTATCACCCCCAAATTAG 57.186 33.333 6.06 0.00 0.00 1.73
5104 5447 7.348537 AGGAGCAAGGTAATACTAATCTTCCTT 59.651 37.037 0.00 0.00 34.69 3.36
5119 5462 9.817365 CTAATCTTCCTTGAATAATAACATGCG 57.183 33.333 0.00 0.00 0.00 4.73
5227 5592 2.573009 TGAGCATCAGGGTCTTTCATGA 59.427 45.455 0.00 0.00 42.56 3.07
5336 5701 1.202687 CCATTCCCATCTGCTCGCTTA 60.203 52.381 0.00 0.00 0.00 3.09
5455 5820 0.677731 TACACCAGCCTCTGCATTGC 60.678 55.000 0.46 0.46 41.13 3.56
5466 5831 3.110027 TGCATTGCAGCATTCAACG 57.890 47.368 7.38 0.00 40.11 4.10
5473 5838 2.153645 TGCAGCATTCAACGAGATTGT 58.846 42.857 0.00 0.00 39.54 2.71
5489 5854 8.888579 ACGAGATTGTTAATTAAGGATTCGAT 57.111 30.769 18.14 5.92 0.00 3.59
5505 5870 6.872020 AGGATTCGATAAACCATATTGTACCG 59.128 38.462 0.00 0.00 0.00 4.02
5530 5895 3.120898 GAGGAATGGTAAGGTAAGGGGT 58.879 50.000 0.00 0.00 0.00 4.95
5553 5918 2.260822 ACCTTGATCCGGGATAGATGG 58.739 52.381 10.08 12.92 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.462678 GTCGGGGCCTGTCCTCTC 61.463 72.222 13.14 0.00 31.12 3.20
15 16 3.471244 GATCTCGCTGTCGGTCGGG 62.471 68.421 0.00 0.00 36.13 5.14
16 17 2.024871 GATCTCGCTGTCGGTCGG 59.975 66.667 0.00 0.00 36.13 4.79
17 18 1.297967 CAGATCTCGCTGTCGGTCG 60.298 63.158 0.00 0.00 36.13 4.79
18 19 1.803943 ACAGATCTCGCTGTCGGTC 59.196 57.895 0.00 0.00 45.54 4.79
19 20 4.004348 ACAGATCTCGCTGTCGGT 57.996 55.556 0.00 0.00 45.54 4.69
24 25 2.279120 GCCGGACAGATCTCGCTG 60.279 66.667 5.05 0.00 41.63 5.18
25 26 2.130426 ATGCCGGACAGATCTCGCT 61.130 57.895 5.05 0.00 0.00 4.93
26 27 1.953138 CATGCCGGACAGATCTCGC 60.953 63.158 5.05 0.00 0.00 5.03
27 28 0.318529 CTCATGCCGGACAGATCTCG 60.319 60.000 5.05 0.00 0.00 4.04
28 29 0.749649 ACTCATGCCGGACAGATCTC 59.250 55.000 5.05 0.00 0.00 2.75
29 30 0.749649 GACTCATGCCGGACAGATCT 59.250 55.000 5.05 0.00 0.00 2.75
30 31 0.249657 GGACTCATGCCGGACAGATC 60.250 60.000 5.05 0.00 0.00 2.75
31 32 0.977627 TGGACTCATGCCGGACAGAT 60.978 55.000 5.05 0.00 0.00 2.90
32 33 0.977627 ATGGACTCATGCCGGACAGA 60.978 55.000 5.05 0.00 31.34 3.41
33 34 0.107508 AATGGACTCATGCCGGACAG 60.108 55.000 5.05 0.00 33.18 3.51
34 35 0.392863 CAATGGACTCATGCCGGACA 60.393 55.000 5.05 2.56 33.18 4.02
35 36 0.392998 ACAATGGACTCATGCCGGAC 60.393 55.000 5.05 0.00 33.18 4.79
36 37 0.392863 CACAATGGACTCATGCCGGA 60.393 55.000 5.05 0.00 33.18 5.14
37 38 0.677731 ACACAATGGACTCATGCCGG 60.678 55.000 0.00 0.00 33.18 6.13
38 39 0.729116 GACACAATGGACTCATGCCG 59.271 55.000 0.00 0.00 33.18 5.69
39 40 0.729116 CGACACAATGGACTCATGCC 59.271 55.000 0.00 0.00 33.18 4.40
40 41 0.729116 CCGACACAATGGACTCATGC 59.271 55.000 0.00 0.00 33.18 4.06
41 42 0.729116 GCCGACACAATGGACTCATG 59.271 55.000 0.00 0.00 33.18 3.07
42 43 0.740868 CGCCGACACAATGGACTCAT 60.741 55.000 0.00 0.00 34.56 2.90
43 44 1.374125 CGCCGACACAATGGACTCA 60.374 57.895 0.00 0.00 0.00 3.41
44 45 2.740714 GCGCCGACACAATGGACTC 61.741 63.158 0.00 0.00 0.00 3.36
45 46 2.742372 GCGCCGACACAATGGACT 60.742 61.111 0.00 0.00 0.00 3.85
46 47 2.309764 GATGCGCCGACACAATGGAC 62.310 60.000 4.18 0.00 0.00 4.02
47 48 2.046411 ATGCGCCGACACAATGGA 60.046 55.556 4.18 0.00 0.00 3.41
48 49 2.108514 AGATGCGCCGACACAATGG 61.109 57.895 4.18 0.00 0.00 3.16
49 50 1.061411 CAGATGCGCCGACACAATG 59.939 57.895 4.18 0.00 0.00 2.82
50 51 2.108514 CCAGATGCGCCGACACAAT 61.109 57.895 4.18 0.00 0.00 2.71
51 52 2.741985 CCAGATGCGCCGACACAA 60.742 61.111 4.18 0.00 0.00 3.33
61 62 3.040763 GATCCGAGCGCCAGATGC 61.041 66.667 2.29 0.00 0.00 3.91
62 63 2.356793 GGATCCGAGCGCCAGATG 60.357 66.667 2.29 0.00 0.00 2.90
63 64 2.093537 GAAGGATCCGAGCGCCAGAT 62.094 60.000 2.29 3.51 0.00 2.90
64 65 2.759973 AAGGATCCGAGCGCCAGA 60.760 61.111 2.29 0.00 0.00 3.86
65 66 2.279784 GAAGGATCCGAGCGCCAG 60.280 66.667 2.29 0.00 0.00 4.85
66 67 4.207281 CGAAGGATCCGAGCGCCA 62.207 66.667 2.29 0.00 0.00 5.69
79 80 1.493950 GCGATGATCCAGCACCGAAG 61.494 60.000 0.00 0.00 0.00 3.79
80 81 1.521457 GCGATGATCCAGCACCGAA 60.521 57.895 0.00 0.00 0.00 4.30
81 82 2.106938 GCGATGATCCAGCACCGA 59.893 61.111 0.00 0.00 0.00 4.69
82 83 3.333189 CGCGATGATCCAGCACCG 61.333 66.667 0.00 0.00 0.00 4.94
83 84 1.287730 GATCGCGATGATCCAGCACC 61.288 60.000 29.09 3.59 46.55 5.01
84 85 2.148687 GATCGCGATGATCCAGCAC 58.851 57.895 29.09 4.43 46.55 4.40
85 86 4.661461 GATCGCGATGATCCAGCA 57.339 55.556 29.09 0.00 46.55 4.41
99 100 0.391228 GGAAGGCTCCCGAGAAGATC 59.609 60.000 0.00 0.00 35.42 2.75
100 101 0.325671 TGGAAGGCTCCCGAGAAGAT 60.326 55.000 0.00 0.00 41.64 2.40
101 102 0.544357 TTGGAAGGCTCCCGAGAAGA 60.544 55.000 0.00 0.00 41.64 2.87
102 103 0.543749 ATTGGAAGGCTCCCGAGAAG 59.456 55.000 0.00 0.00 41.64 2.85
103 104 0.541863 GATTGGAAGGCTCCCGAGAA 59.458 55.000 0.00 0.00 41.64 2.87
104 105 0.325671 AGATTGGAAGGCTCCCGAGA 60.326 55.000 0.00 0.00 41.64 4.04
105 106 0.105778 GAGATTGGAAGGCTCCCGAG 59.894 60.000 0.00 0.00 41.64 4.63
106 107 1.338136 GGAGATTGGAAGGCTCCCGA 61.338 60.000 0.00 0.00 41.84 5.14
107 108 1.147153 GGAGATTGGAAGGCTCCCG 59.853 63.158 0.00 0.00 41.84 5.14
109 110 0.922626 AAGGGAGATTGGAAGGCTCC 59.077 55.000 0.00 0.00 45.88 4.70
110 111 2.649190 GAAAGGGAGATTGGAAGGCTC 58.351 52.381 0.00 0.00 0.00 4.70
111 112 1.286257 GGAAAGGGAGATTGGAAGGCT 59.714 52.381 0.00 0.00 0.00 4.58
112 113 1.686428 GGGAAAGGGAGATTGGAAGGC 60.686 57.143 0.00 0.00 0.00 4.35
113 114 1.063642 GGGGAAAGGGAGATTGGAAGG 60.064 57.143 0.00 0.00 0.00 3.46
114 115 1.640670 TGGGGAAAGGGAGATTGGAAG 59.359 52.381 0.00 0.00 0.00 3.46
115 116 1.766951 TGGGGAAAGGGAGATTGGAA 58.233 50.000 0.00 0.00 0.00 3.53
116 117 1.852965 GATGGGGAAAGGGAGATTGGA 59.147 52.381 0.00 0.00 0.00 3.53
117 118 1.570501 TGATGGGGAAAGGGAGATTGG 59.429 52.381 0.00 0.00 0.00 3.16
118 119 2.659428 GTGATGGGGAAAGGGAGATTG 58.341 52.381 0.00 0.00 0.00 2.67
119 120 1.570979 GGTGATGGGGAAAGGGAGATT 59.429 52.381 0.00 0.00 0.00 2.40
120 121 1.226311 GGTGATGGGGAAAGGGAGAT 58.774 55.000 0.00 0.00 0.00 2.75
121 122 0.121197 AGGTGATGGGGAAAGGGAGA 59.879 55.000 0.00 0.00 0.00 3.71
122 123 0.257039 CAGGTGATGGGGAAAGGGAG 59.743 60.000 0.00 0.00 0.00 4.30
123 124 0.477597 ACAGGTGATGGGGAAAGGGA 60.478 55.000 0.00 0.00 0.00 4.20
124 125 0.034089 GACAGGTGATGGGGAAAGGG 60.034 60.000 0.00 0.00 0.00 3.95
125 126 0.034089 GGACAGGTGATGGGGAAAGG 60.034 60.000 0.00 0.00 0.00 3.11
126 127 0.698238 TGGACAGGTGATGGGGAAAG 59.302 55.000 0.00 0.00 0.00 2.62
127 128 0.404040 GTGGACAGGTGATGGGGAAA 59.596 55.000 0.00 0.00 0.00 3.13
128 129 1.497309 GGTGGACAGGTGATGGGGAA 61.497 60.000 0.00 0.00 0.00 3.97
129 130 1.923395 GGTGGACAGGTGATGGGGA 60.923 63.158 0.00 0.00 0.00 4.81
130 131 2.677228 GGTGGACAGGTGATGGGG 59.323 66.667 0.00 0.00 0.00 4.96
131 132 2.268920 CGGTGGACAGGTGATGGG 59.731 66.667 0.00 0.00 0.00 4.00
132 133 2.268920 CCGGTGGACAGGTGATGG 59.731 66.667 0.00 0.00 0.00 3.51
133 134 2.268920 CCCGGTGGACAGGTGATG 59.731 66.667 0.00 0.00 0.00 3.07
134 135 2.465010 TACCCCGGTGGACAGGTGAT 62.465 60.000 15.08 0.00 38.00 3.06
135 136 2.465010 ATACCCCGGTGGACAGGTGA 62.465 60.000 15.08 0.00 38.00 4.02
136 137 1.993391 ATACCCCGGTGGACAGGTG 60.993 63.158 15.08 0.00 38.00 4.00
137 138 1.993391 CATACCCCGGTGGACAGGT 60.993 63.158 15.08 9.30 38.00 4.00
138 139 1.686325 CTCATACCCCGGTGGACAGG 61.686 65.000 15.08 3.29 38.00 4.00
139 140 0.976073 ACTCATACCCCGGTGGACAG 60.976 60.000 15.08 7.51 38.00 3.51
140 141 0.974010 GACTCATACCCCGGTGGACA 60.974 60.000 15.08 3.77 38.00 4.02
141 142 0.974010 TGACTCATACCCCGGTGGAC 60.974 60.000 15.08 0.00 38.00 4.02
142 143 0.031515 ATGACTCATACCCCGGTGGA 60.032 55.000 15.08 0.00 38.00 4.02
143 144 0.393077 GATGACTCATACCCCGGTGG 59.607 60.000 0.00 3.72 41.37 4.61
144 145 0.393077 GGATGACTCATACCCCGGTG 59.607 60.000 0.00 0.00 0.00 4.94
145 146 0.763223 GGGATGACTCATACCCCGGT 60.763 60.000 9.03 0.00 38.87 5.28
146 147 2.058675 GGGATGACTCATACCCCGG 58.941 63.158 9.03 0.00 38.87 5.73
148 149 1.481056 CCCGGGATGACTCATACCCC 61.481 65.000 18.48 9.66 41.66 4.95
149 150 0.471211 TCCCGGGATGACTCATACCC 60.471 60.000 22.63 13.42 41.66 3.69
150 151 0.680061 GTCCCGGGATGACTCATACC 59.320 60.000 29.73 10.09 41.29 2.73
151 152 0.680061 GGTCCCGGGATGACTCATAC 59.320 60.000 29.73 10.87 33.22 2.39
152 153 0.471211 GGGTCCCGGGATGACTCATA 60.471 60.000 29.73 0.00 33.28 2.15
153 154 1.766461 GGGTCCCGGGATGACTCAT 60.766 63.158 29.73 0.00 33.28 2.90
154 155 2.365105 GGGTCCCGGGATGACTCA 60.365 66.667 29.73 0.00 33.28 3.41
155 156 3.537874 CGGGTCCCGGGATGACTC 61.538 72.222 29.73 14.24 44.15 3.36
178 179 4.760047 CTGTCCTTCCCACGGCGG 62.760 72.222 13.24 0.00 0.00 6.13
179 180 4.760047 CCTGTCCTTCCCACGGCG 62.760 72.222 4.80 4.80 0.00 6.46
180 181 2.670148 ATCCTGTCCTTCCCACGGC 61.670 63.158 0.00 0.00 0.00 5.68
181 182 1.221840 CATCCTGTCCTTCCCACGG 59.778 63.158 0.00 0.00 0.00 4.94
182 183 0.176680 CTCATCCTGTCCTTCCCACG 59.823 60.000 0.00 0.00 0.00 4.94
183 184 0.543749 CCTCATCCTGTCCTTCCCAC 59.456 60.000 0.00 0.00 0.00 4.61
184 185 0.621571 CCCTCATCCTGTCCTTCCCA 60.622 60.000 0.00 0.00 0.00 4.37
185 186 0.326618 TCCCTCATCCTGTCCTTCCC 60.327 60.000 0.00 0.00 0.00 3.97
186 187 1.488393 CTTCCCTCATCCTGTCCTTCC 59.512 57.143 0.00 0.00 0.00 3.46
187 188 1.134250 GCTTCCCTCATCCTGTCCTTC 60.134 57.143 0.00 0.00 0.00 3.46
188 189 0.915364 GCTTCCCTCATCCTGTCCTT 59.085 55.000 0.00 0.00 0.00 3.36
189 190 0.985490 GGCTTCCCTCATCCTGTCCT 60.985 60.000 0.00 0.00 0.00 3.85
190 191 1.529309 GGCTTCCCTCATCCTGTCC 59.471 63.158 0.00 0.00 0.00 4.02
191 192 1.144936 CGGCTTCCCTCATCCTGTC 59.855 63.158 0.00 0.00 0.00 3.51
192 193 1.306141 TCGGCTTCCCTCATCCTGT 60.306 57.895 0.00 0.00 0.00 4.00
193 194 1.445095 CTCGGCTTCCCTCATCCTG 59.555 63.158 0.00 0.00 0.00 3.86
194 195 1.764054 CCTCGGCTTCCCTCATCCT 60.764 63.158 0.00 0.00 0.00 3.24
195 196 2.825264 CCTCGGCTTCCCTCATCC 59.175 66.667 0.00 0.00 0.00 3.51
196 197 2.110006 GCCTCGGCTTCCCTCATC 59.890 66.667 0.00 0.00 38.26 2.92
197 198 3.483869 GGCCTCGGCTTCCCTCAT 61.484 66.667 8.00 0.00 41.60 2.90
211 212 1.600916 GTTGTCAGTGAGGTGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
212 213 0.250901 ATGTTGTCAGTGAGGTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
213 214 1.072173 TCATGTTGTCAGTGAGGTGGG 59.928 52.381 0.00 0.00 0.00 4.61
214 215 2.549064 TCATGTTGTCAGTGAGGTGG 57.451 50.000 0.00 0.00 0.00 4.61
215 216 2.745821 CCATCATGTTGTCAGTGAGGTG 59.254 50.000 0.00 0.00 0.00 4.00
216 217 2.877300 GCCATCATGTTGTCAGTGAGGT 60.877 50.000 0.00 0.00 0.00 3.85
217 218 1.741706 GCCATCATGTTGTCAGTGAGG 59.258 52.381 0.00 0.00 0.00 3.86
218 219 1.395954 CGCCATCATGTTGTCAGTGAG 59.604 52.381 0.00 0.00 0.00 3.51
219 220 1.441738 CGCCATCATGTTGTCAGTGA 58.558 50.000 3.19 0.00 0.00 3.41
220 221 0.448990 CCGCCATCATGTTGTCAGTG 59.551 55.000 3.19 0.00 0.00 3.66
221 222 0.036732 ACCGCCATCATGTTGTCAGT 59.963 50.000 3.19 0.00 0.00 3.41
222 223 0.448990 CACCGCCATCATGTTGTCAG 59.551 55.000 3.19 0.00 0.00 3.51
223 224 0.959867 CCACCGCCATCATGTTGTCA 60.960 55.000 3.19 0.00 0.00 3.58
224 225 0.676466 TCCACCGCCATCATGTTGTC 60.676 55.000 3.19 0.00 0.00 3.18
225 226 0.677731 CTCCACCGCCATCATGTTGT 60.678 55.000 3.19 0.00 0.00 3.32
226 227 1.378882 CCTCCACCGCCATCATGTTG 61.379 60.000 0.00 0.00 0.00 3.33
227 228 1.077501 CCTCCACCGCCATCATGTT 60.078 57.895 0.00 0.00 0.00 2.71
228 229 2.591753 CCTCCACCGCCATCATGT 59.408 61.111 0.00 0.00 0.00 3.21
229 230 2.903855 GCCTCCACCGCCATCATG 60.904 66.667 0.00 0.00 0.00 3.07
230 231 4.552365 CGCCTCCACCGCCATCAT 62.552 66.667 0.00 0.00 0.00 2.45
242 243 4.162690 ATCAACCGCCTCCGCCTC 62.163 66.667 0.00 0.00 0.00 4.70
243 244 4.473520 CATCAACCGCCTCCGCCT 62.474 66.667 0.00 0.00 0.00 5.52
269 270 2.185350 CTACTCTGCGGGTGCCTG 59.815 66.667 0.00 0.00 41.78 4.85
270 271 3.077556 CCTACTCTGCGGGTGCCT 61.078 66.667 0.00 0.00 41.78 4.75
271 272 4.840005 GCCTACTCTGCGGGTGCC 62.840 72.222 0.00 0.00 41.78 5.01
272 273 3.605749 TTGCCTACTCTGCGGGTGC 62.606 63.158 0.00 0.00 43.20 5.01
273 274 1.741770 GTTGCCTACTCTGCGGGTG 60.742 63.158 0.00 0.00 0.00 4.61
274 275 2.663196 GTTGCCTACTCTGCGGGT 59.337 61.111 0.00 0.00 0.00 5.28
275 276 2.125106 GGTTGCCTACTCTGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
276 277 0.811616 GATGGTTGCCTACTCTGCGG 60.812 60.000 0.00 0.00 0.00 5.69
277 278 1.148157 CGATGGTTGCCTACTCTGCG 61.148 60.000 0.00 0.00 0.00 5.18
278 279 0.811616 CCGATGGTTGCCTACTCTGC 60.812 60.000 0.00 0.00 0.00 4.26
279 280 0.811616 GCCGATGGTTGCCTACTCTG 60.812 60.000 0.00 0.00 0.00 3.35
280 281 1.522569 GCCGATGGTTGCCTACTCT 59.477 57.895 0.00 0.00 0.00 3.24
281 282 1.883084 CGCCGATGGTTGCCTACTC 60.883 63.158 0.00 0.00 0.00 2.59
282 283 2.186903 CGCCGATGGTTGCCTACT 59.813 61.111 0.00 0.00 0.00 2.57
283 284 2.125269 ACGCCGATGGTTGCCTAC 60.125 61.111 0.00 0.00 0.00 3.18
284 285 2.185867 GACGCCGATGGTTGCCTA 59.814 61.111 0.00 0.00 0.00 3.93
285 286 3.706373 AGACGCCGATGGTTGCCT 61.706 61.111 0.00 0.00 0.00 4.75
286 287 3.499737 CAGACGCCGATGGTTGCC 61.500 66.667 0.00 0.00 0.00 4.52
287 288 4.166011 GCAGACGCCGATGGTTGC 62.166 66.667 0.00 0.00 0.00 4.17
288 289 2.741985 TGCAGACGCCGATGGTTG 60.742 61.111 0.00 0.00 37.32 3.77
289 290 2.742372 GTGCAGACGCCGATGGTT 60.742 61.111 0.00 0.00 37.32 3.67
290 291 3.695606 AGTGCAGACGCCGATGGT 61.696 61.111 0.00 0.00 37.32 3.55
291 292 2.557059 TACAGTGCAGACGCCGATGG 62.557 60.000 0.00 0.00 37.32 3.51
292 293 0.735978 TTACAGTGCAGACGCCGATG 60.736 55.000 0.00 0.00 37.32 3.84
293 294 0.037697 TTTACAGTGCAGACGCCGAT 60.038 50.000 0.00 0.00 37.32 4.18
294 295 0.249531 TTTTACAGTGCAGACGCCGA 60.250 50.000 0.00 0.00 37.32 5.54
295 296 0.584396 TTTTTACAGTGCAGACGCCG 59.416 50.000 0.00 0.00 37.32 6.46
318 319 2.127758 GCGTGTTTCTCCGTTGCG 60.128 61.111 0.00 0.00 0.00 4.85
319 320 2.127758 CGCGTGTTTCTCCGTTGC 60.128 61.111 0.00 0.00 0.00 4.17
320 321 2.127758 GCGCGTGTTTCTCCGTTG 60.128 61.111 8.43 0.00 0.00 4.10
321 322 3.698463 CGCGCGTGTTTCTCCGTT 61.698 61.111 24.19 0.00 0.00 4.44
340 341 2.846652 ATTAGCGTCTCGGGCGAGG 61.847 63.158 0.00 0.00 42.20 4.63
341 342 1.658717 CATTAGCGTCTCGGGCGAG 60.659 63.158 3.27 0.00 43.21 5.03
342 343 2.411701 CATTAGCGTCTCGGGCGA 59.588 61.111 3.27 0.00 35.00 5.54
343 344 3.330853 GCATTAGCGTCTCGGGCG 61.331 66.667 0.00 0.00 35.00 6.13
353 354 5.291128 AGTTGTGTAATCGTGTAGCATTAGC 59.709 40.000 0.00 0.00 42.56 3.09
354 355 6.291112 CGAGTTGTGTAATCGTGTAGCATTAG 60.291 42.308 0.00 0.00 0.00 1.73
355 356 5.513849 CGAGTTGTGTAATCGTGTAGCATTA 59.486 40.000 0.00 0.00 0.00 1.90
356 357 4.326278 CGAGTTGTGTAATCGTGTAGCATT 59.674 41.667 0.00 0.00 0.00 3.56
357 358 3.857665 CGAGTTGTGTAATCGTGTAGCAT 59.142 43.478 0.00 0.00 0.00 3.79
358 359 3.239254 CGAGTTGTGTAATCGTGTAGCA 58.761 45.455 0.00 0.00 0.00 3.49
359 360 3.240069 ACGAGTTGTGTAATCGTGTAGC 58.760 45.455 0.00 0.00 46.99 3.58
365 366 5.798434 TGAACAGATACGAGTTGTGTAATCG 59.202 40.000 0.00 0.00 42.04 3.34
366 367 7.576750 TTGAACAGATACGAGTTGTGTAATC 57.423 36.000 0.00 0.00 0.00 1.75
367 368 9.647797 TTATTGAACAGATACGAGTTGTGTAAT 57.352 29.630 0.00 0.00 0.00 1.89
368 369 9.478768 TTTATTGAACAGATACGAGTTGTGTAA 57.521 29.630 0.00 0.00 0.00 2.41
369 370 9.478768 TTTTATTGAACAGATACGAGTTGTGTA 57.521 29.630 0.00 0.00 0.00 2.90
370 371 7.956420 TTTATTGAACAGATACGAGTTGTGT 57.044 32.000 0.00 0.00 0.00 3.72
371 372 9.825972 AATTTTATTGAACAGATACGAGTTGTG 57.174 29.630 0.00 0.00 0.00 3.33
391 392 8.917655 GGCAGCGAAAAATGTAAACTAATTTTA 58.082 29.630 0.00 0.00 35.47 1.52
392 393 7.358848 CGGCAGCGAAAAATGTAAACTAATTTT 60.359 33.333 0.00 0.00 37.54 1.82
393 394 6.088883 CGGCAGCGAAAAATGTAAACTAATTT 59.911 34.615 0.00 0.00 0.00 1.82
394 395 5.571357 CGGCAGCGAAAAATGTAAACTAATT 59.429 36.000 0.00 0.00 0.00 1.40
395 396 5.092781 CGGCAGCGAAAAATGTAAACTAAT 58.907 37.500 0.00 0.00 0.00 1.73
396 397 4.023878 ACGGCAGCGAAAAATGTAAACTAA 60.024 37.500 0.00 0.00 0.00 2.24
397 398 3.499157 ACGGCAGCGAAAAATGTAAACTA 59.501 39.130 0.00 0.00 0.00 2.24
398 399 2.292292 ACGGCAGCGAAAAATGTAAACT 59.708 40.909 0.00 0.00 0.00 2.66
399 400 2.657184 ACGGCAGCGAAAAATGTAAAC 58.343 42.857 0.00 0.00 0.00 2.01
400 401 4.485024 TTACGGCAGCGAAAAATGTAAA 57.515 36.364 0.00 0.00 0.00 2.01
401 402 4.485024 TTTACGGCAGCGAAAAATGTAA 57.515 36.364 0.00 0.00 0.00 2.41
402 403 4.485024 TTTTACGGCAGCGAAAAATGTA 57.515 36.364 0.00 0.00 0.00 2.29
403 404 3.357166 TTTTACGGCAGCGAAAAATGT 57.643 38.095 0.00 0.00 0.00 2.71
404 405 3.487574 TGTTTTTACGGCAGCGAAAAATG 59.512 39.130 11.31 0.00 35.26 2.32
405 406 3.707793 TGTTTTTACGGCAGCGAAAAAT 58.292 36.364 11.31 0.00 35.26 1.82
406 407 3.109619 CTGTTTTTACGGCAGCGAAAAA 58.890 40.909 6.08 6.08 31.42 1.94
407 408 2.355132 TCTGTTTTTACGGCAGCGAAAA 59.645 40.909 0.00 0.00 0.00 2.29
408 409 1.941294 TCTGTTTTTACGGCAGCGAAA 59.059 42.857 0.00 0.00 0.00 3.46
409 410 1.262151 GTCTGTTTTTACGGCAGCGAA 59.738 47.619 0.00 0.00 0.00 4.70
410 411 0.863144 GTCTGTTTTTACGGCAGCGA 59.137 50.000 0.00 0.00 0.00 4.93
411 412 0.584396 TGTCTGTTTTTACGGCAGCG 59.416 50.000 0.00 0.00 0.00 5.18
412 413 1.332375 TGTGTCTGTTTTTACGGCAGC 59.668 47.619 0.00 0.00 0.00 5.25
413 414 3.554524 CATGTGTCTGTTTTTACGGCAG 58.445 45.455 0.00 0.00 0.00 4.85
414 415 2.292016 CCATGTGTCTGTTTTTACGGCA 59.708 45.455 0.00 0.00 0.00 5.69
415 416 2.550606 TCCATGTGTCTGTTTTTACGGC 59.449 45.455 0.00 0.00 0.00 5.68
416 417 4.822036 TTCCATGTGTCTGTTTTTACGG 57.178 40.909 0.00 0.00 0.00 4.02
417 418 6.915300 TGATTTTCCATGTGTCTGTTTTTACG 59.085 34.615 0.00 0.00 0.00 3.18
418 419 8.816640 ATGATTTTCCATGTGTCTGTTTTTAC 57.183 30.769 0.00 0.00 0.00 2.01
420 421 9.426837 CATATGATTTTCCATGTGTCTGTTTTT 57.573 29.630 0.00 0.00 32.97 1.94
421 422 8.587608 ACATATGATTTTCCATGTGTCTGTTTT 58.412 29.630 10.38 0.00 42.59 2.43
422 423 8.030692 CACATATGATTTTCCATGTGTCTGTTT 58.969 33.333 10.38 0.00 43.75 2.83
423 424 7.541162 CACATATGATTTTCCATGTGTCTGTT 58.459 34.615 10.38 0.00 43.75 3.16
424 425 6.405065 GCACATATGATTTTCCATGTGTCTGT 60.405 38.462 10.38 0.00 46.37 3.41
425 426 5.975344 GCACATATGATTTTCCATGTGTCTG 59.025 40.000 10.38 0.00 46.37 3.51
426 427 5.220912 CGCACATATGATTTTCCATGTGTCT 60.221 40.000 10.38 0.00 46.37 3.41
427 428 4.971830 CGCACATATGATTTTCCATGTGTC 59.028 41.667 10.38 6.65 46.37 3.67
428 429 4.202040 CCGCACATATGATTTTCCATGTGT 60.202 41.667 10.38 0.00 46.37 3.72
430 431 4.206375 TCCGCACATATGATTTTCCATGT 58.794 39.130 10.38 0.00 31.91 3.21
431 432 4.516321 TCTCCGCACATATGATTTTCCATG 59.484 41.667 10.38 0.00 0.00 3.66
432 433 4.516698 GTCTCCGCACATATGATTTTCCAT 59.483 41.667 10.38 0.00 0.00 3.41
433 434 3.876914 GTCTCCGCACATATGATTTTCCA 59.123 43.478 10.38 0.00 0.00 3.53
434 435 3.059597 CGTCTCCGCACATATGATTTTCC 60.060 47.826 10.38 0.00 0.00 3.13
435 436 3.059597 CCGTCTCCGCACATATGATTTTC 60.060 47.826 10.38 0.00 0.00 2.29
436 437 2.872245 CCGTCTCCGCACATATGATTTT 59.128 45.455 10.38 0.00 0.00 1.82
437 438 2.158957 ACCGTCTCCGCACATATGATTT 60.159 45.455 10.38 0.00 0.00 2.17
438 439 1.412710 ACCGTCTCCGCACATATGATT 59.587 47.619 10.38 0.00 0.00 2.57
439 440 1.040646 ACCGTCTCCGCACATATGAT 58.959 50.000 10.38 0.00 0.00 2.45
440 441 0.102300 CACCGTCTCCGCACATATGA 59.898 55.000 10.38 0.00 0.00 2.15
441 442 0.102300 TCACCGTCTCCGCACATATG 59.898 55.000 0.00 0.00 0.00 1.78
442 443 1.000163 GATCACCGTCTCCGCACATAT 60.000 52.381 0.00 0.00 0.00 1.78
443 444 0.384309 GATCACCGTCTCCGCACATA 59.616 55.000 0.00 0.00 0.00 2.29
444 445 1.141881 GATCACCGTCTCCGCACAT 59.858 57.895 0.00 0.00 0.00 3.21
445 446 2.571757 GATCACCGTCTCCGCACA 59.428 61.111 0.00 0.00 0.00 4.57
446 447 1.381928 TAGGATCACCGTCTCCGCAC 61.382 60.000 0.00 0.00 41.83 5.34
447 448 1.077285 TAGGATCACCGTCTCCGCA 60.077 57.895 0.00 0.00 41.83 5.69
448 449 1.359475 GTAGGATCACCGTCTCCGC 59.641 63.158 0.00 0.00 41.83 5.54
449 450 0.381089 GTGTAGGATCACCGTCTCCG 59.619 60.000 0.00 0.00 41.83 4.63
450 451 1.471119 TGTGTAGGATCACCGTCTCC 58.529 55.000 0.00 0.00 41.83 3.71
451 452 2.427453 ACATGTGTAGGATCACCGTCTC 59.573 50.000 0.00 0.00 41.83 3.36
452 453 2.457598 ACATGTGTAGGATCACCGTCT 58.542 47.619 0.00 0.00 41.83 4.18
453 454 2.961526 ACATGTGTAGGATCACCGTC 57.038 50.000 0.00 0.00 41.83 4.79
454 455 2.429610 GGTACATGTGTAGGATCACCGT 59.570 50.000 9.11 0.00 41.83 4.83
455 456 2.693591 AGGTACATGTGTAGGATCACCG 59.306 50.000 9.11 0.00 41.83 4.94
456 457 3.069729 GGAGGTACATGTGTAGGATCACC 59.930 52.174 9.11 5.27 37.51 4.02
457 458 3.704566 TGGAGGTACATGTGTAGGATCAC 59.295 47.826 9.11 0.00 38.63 3.06
458 459 3.989056 TGGAGGTACATGTGTAGGATCA 58.011 45.455 9.11 0.00 0.00 2.92
459 460 5.353394 TTTGGAGGTACATGTGTAGGATC 57.647 43.478 9.11 0.00 0.00 3.36
460 461 5.772393 TTTTGGAGGTACATGTGTAGGAT 57.228 39.130 9.11 0.00 0.00 3.24
461 462 5.570205 TTTTTGGAGGTACATGTGTAGGA 57.430 39.130 9.11 0.00 0.00 2.94
481 482 9.236006 AGATGTAGAAATGTGTAGCATCTTTTT 57.764 29.630 0.00 0.00 38.56 1.94
482 483 8.798859 AGATGTAGAAATGTGTAGCATCTTTT 57.201 30.769 0.00 0.00 38.56 2.27
484 485 9.703892 GATAGATGTAGAAATGTGTAGCATCTT 57.296 33.333 9.02 0.00 40.97 2.40
485 486 9.087871 AGATAGATGTAGAAATGTGTAGCATCT 57.912 33.333 0.00 0.00 42.53 2.90
488 489 9.131791 TGTAGATAGATGTAGAAATGTGTAGCA 57.868 33.333 0.00 0.00 0.00 3.49
512 513 9.369904 GCCTTGTTTTCATGTTTTATCATATGT 57.630 29.630 1.90 0.00 0.00 2.29
513 514 8.819974 GGCCTTGTTTTCATGTTTTATCATATG 58.180 33.333 0.00 0.00 0.00 1.78
514 515 8.761689 AGGCCTTGTTTTCATGTTTTATCATAT 58.238 29.630 0.00 0.00 0.00 1.78
515 516 8.034215 CAGGCCTTGTTTTCATGTTTTATCATA 58.966 33.333 0.00 0.00 0.00 2.15
516 517 6.875195 CAGGCCTTGTTTTCATGTTTTATCAT 59.125 34.615 0.00 0.00 0.00 2.45
517 518 6.041409 TCAGGCCTTGTTTTCATGTTTTATCA 59.959 34.615 0.00 0.00 0.00 2.15
518 519 6.454795 TCAGGCCTTGTTTTCATGTTTTATC 58.545 36.000 0.00 0.00 0.00 1.75
519 520 6.418057 TCAGGCCTTGTTTTCATGTTTTAT 57.582 33.333 0.00 0.00 0.00 1.40
520 521 5.860941 TCAGGCCTTGTTTTCATGTTTTA 57.139 34.783 0.00 0.00 0.00 1.52
521 522 4.751767 TCAGGCCTTGTTTTCATGTTTT 57.248 36.364 0.00 0.00 0.00 2.43
522 523 4.961438 ATCAGGCCTTGTTTTCATGTTT 57.039 36.364 0.00 0.00 0.00 2.83
523 524 5.105228 CCATATCAGGCCTTGTTTTCATGTT 60.105 40.000 0.00 0.00 0.00 2.71
524 525 4.403432 CCATATCAGGCCTTGTTTTCATGT 59.597 41.667 0.00 0.00 0.00 3.21
525 526 4.403432 ACCATATCAGGCCTTGTTTTCATG 59.597 41.667 0.00 0.00 0.00 3.07
526 527 4.613437 ACCATATCAGGCCTTGTTTTCAT 58.387 39.130 0.00 0.00 0.00 2.57
527 528 4.046286 ACCATATCAGGCCTTGTTTTCA 57.954 40.909 0.00 0.00 0.00 2.69
535 536 2.097110 TCGGTTACCATATCAGGCCT 57.903 50.000 0.00 0.00 0.00 5.19
540 541 8.568676 TTTTCTCATTTTCGGTTACCATATCA 57.431 30.769 1.13 0.00 0.00 2.15
541 542 8.129211 CCTTTTCTCATTTTCGGTTACCATATC 58.871 37.037 1.13 0.00 0.00 1.63
548 549 8.079809 GTCATTTCCTTTTCTCATTTTCGGTTA 58.920 33.333 0.00 0.00 0.00 2.85
554 555 6.294731 CCTCCGTCATTTCCTTTTCTCATTTT 60.295 38.462 0.00 0.00 0.00 1.82
555 556 5.183904 CCTCCGTCATTTCCTTTTCTCATTT 59.816 40.000 0.00 0.00 0.00 2.32
558 559 3.326588 TCCTCCGTCATTTCCTTTTCTCA 59.673 43.478 0.00 0.00 0.00 3.27
563 564 4.576330 AATCTCCTCCGTCATTTCCTTT 57.424 40.909 0.00 0.00 0.00 3.11
567 568 2.356069 GCCAAATCTCCTCCGTCATTTC 59.644 50.000 0.00 0.00 0.00 2.17
570 571 0.179073 CGCCAAATCTCCTCCGTCAT 60.179 55.000 0.00 0.00 0.00 3.06
571 572 1.218047 CGCCAAATCTCCTCCGTCA 59.782 57.895 0.00 0.00 0.00 4.35
599 604 2.665185 AAGTGACAGCCGTTCGCC 60.665 61.111 0.00 0.00 38.78 5.54
603 608 2.665185 GCCGAAGTGACAGCCGTT 60.665 61.111 0.00 0.00 0.00 4.44
605 610 3.114616 CAGCCGAAGTGACAGCCG 61.115 66.667 0.00 0.00 0.00 5.52
607 612 2.029844 GTCCAGCCGAAGTGACAGC 61.030 63.158 0.00 0.00 0.00 4.40
619 624 1.073284 TGTTCCACCCTAAAGTCCAGC 59.927 52.381 0.00 0.00 0.00 4.85
625 630 2.224523 TGCTGACTGTTCCACCCTAAAG 60.225 50.000 0.00 0.00 0.00 1.85
633 638 1.071987 CTGCCTGCTGACTGTTCCA 59.928 57.895 0.00 0.00 0.00 3.53
637 642 3.644606 CCCCTGCCTGCTGACTGT 61.645 66.667 0.00 0.00 0.00 3.55
638 643 3.324930 TCCCCTGCCTGCTGACTG 61.325 66.667 0.00 0.00 0.00 3.51
641 646 2.686470 CTCTCCCCTGCCTGCTGA 60.686 66.667 0.00 0.00 0.00 4.26
642 647 4.486503 GCTCTCCCCTGCCTGCTG 62.487 72.222 0.00 0.00 0.00 4.41
648 653 2.042404 CTGAGATGGCTCTCCCCTGC 62.042 65.000 10.22 0.00 46.28 4.85
649 654 1.409251 CCTGAGATGGCTCTCCCCTG 61.409 65.000 10.22 1.49 46.28 4.45
650 655 1.074623 CCTGAGATGGCTCTCCCCT 60.075 63.158 10.22 0.00 46.28 4.79
658 665 3.953006 GGATGGATCCTGAGATGGC 57.047 57.895 14.23 0.00 43.73 4.40
668 675 1.632920 GGGAATGAGGGAGGATGGATC 59.367 57.143 0.00 0.00 0.00 3.36
669 676 1.752608 GGGAATGAGGGAGGATGGAT 58.247 55.000 0.00 0.00 0.00 3.41
670 677 0.401979 GGGGAATGAGGGAGGATGGA 60.402 60.000 0.00 0.00 0.00 3.41
671 678 0.402566 AGGGGAATGAGGGAGGATGG 60.403 60.000 0.00 0.00 0.00 3.51
672 679 1.063183 GAGGGGAATGAGGGAGGATG 58.937 60.000 0.00 0.00 0.00 3.51
673 680 0.955752 AGAGGGGAATGAGGGAGGAT 59.044 55.000 0.00 0.00 0.00 3.24
674 681 0.266152 GAGAGGGGAATGAGGGAGGA 59.734 60.000 0.00 0.00 0.00 3.71
675 682 0.766288 GGAGAGGGGAATGAGGGAGG 60.766 65.000 0.00 0.00 0.00 4.30
676 683 1.118356 CGGAGAGGGGAATGAGGGAG 61.118 65.000 0.00 0.00 0.00 4.30
677 684 1.075226 CGGAGAGGGGAATGAGGGA 60.075 63.158 0.00 0.00 0.00 4.20
678 685 0.983378 AACGGAGAGGGGAATGAGGG 60.983 60.000 0.00 0.00 0.00 4.30
679 686 0.179000 CAACGGAGAGGGGAATGAGG 59.821 60.000 0.00 0.00 0.00 3.86
705 712 1.480212 TATAGCCACCCATCCAGCCG 61.480 60.000 0.00 0.00 0.00 5.52
709 716 2.656947 GCTTTATAGCCACCCATCCA 57.343 50.000 0.00 0.00 41.74 3.41
827 860 4.162690 GACAGGGCGGTGGGCTAG 62.163 72.222 0.00 0.00 42.94 3.42
828 861 4.715130 AGACAGGGCGGTGGGCTA 62.715 66.667 0.00 0.00 42.94 3.93
836 869 4.463879 CAGAGGGCAGACAGGGCG 62.464 72.222 0.00 0.00 0.00 6.13
837 870 4.792804 GCAGAGGGCAGACAGGGC 62.793 72.222 0.00 0.00 43.97 5.19
858 891 4.554036 GGGAGTGATGCGGAGGGC 62.554 72.222 0.00 0.00 43.96 5.19
860 893 3.866582 GGGGGAGTGATGCGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
896 929 1.682684 GAGGGGAGGAGCGAGTCAA 60.683 63.158 0.00 0.00 0.00 3.18
910 943 4.075793 TCGGTCAGGAGGGGAGGG 62.076 72.222 0.00 0.00 0.00 4.30
934 967 1.203523 CGAGAGAAACCTCCTCACCTG 59.796 57.143 0.00 0.00 33.25 4.00
937 970 0.108567 GGCGAGAGAAACCTCCTCAC 60.109 60.000 0.00 0.00 33.25 3.51
938 971 1.595993 CGGCGAGAGAAACCTCCTCA 61.596 60.000 0.00 0.00 33.25 3.86
961 996 4.593864 GCTCACCCGCCGGAGATC 62.594 72.222 5.05 0.00 32.87 2.75
983 1022 3.936203 TGGAGACAAACCGGCGCT 61.936 61.111 7.64 0.00 37.44 5.92
1000 1039 5.888982 AAAGGACACGGAGGAATATACAT 57.111 39.130 0.00 0.00 0.00 2.29
1010 1049 4.320494 CCATCAAAAGAAAAGGACACGGAG 60.320 45.833 0.00 0.00 0.00 4.63
1012 1051 3.305335 CCCATCAAAAGAAAAGGACACGG 60.305 47.826 0.00 0.00 0.00 4.94
1019 1058 5.917462 ACAGGAAACCCATCAAAAGAAAAG 58.083 37.500 0.00 0.00 0.00 2.27
1026 1065 4.223923 ACAAACAACAGGAAACCCATCAAA 59.776 37.500 0.00 0.00 0.00 2.69
1035 1078 4.264460 ACTGCAAACAAACAACAGGAAA 57.736 36.364 0.00 0.00 32.60 3.13
1044 1087 0.920664 GGCGTGAACTGCAAACAAAC 59.079 50.000 0.00 0.00 0.00 2.93
1118 1170 2.124996 CCCTTCCTCCTCCCCACA 59.875 66.667 0.00 0.00 0.00 4.17
1127 1179 0.253207 TCTTCCCCTTCCCCTTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
1139 1195 2.107141 CGGCGACAGATCTTCCCC 59.893 66.667 0.00 0.00 0.00 4.81
1140 1196 2.586357 GCGGCGACAGATCTTCCC 60.586 66.667 12.98 0.00 0.00 3.97
1141 1197 2.586357 GGCGGCGACAGATCTTCC 60.586 66.667 12.98 0.00 0.00 3.46
1288 1374 0.631212 AGGTAAGAAGGCAATGGGGG 59.369 55.000 0.00 0.00 0.00 5.40
1434 1541 2.274437 ACAGCTCAGTATGCACATTCG 58.726 47.619 0.00 0.00 34.76 3.34
1507 1619 0.804989 GCTCGGCAACAACTAAGCAT 59.195 50.000 0.00 0.00 0.00 3.79
1508 1620 0.533978 TGCTCGGCAACAACTAAGCA 60.534 50.000 0.00 0.00 34.76 3.91
1524 1636 2.731691 ATTTCGCTGTCGTGGGTGCT 62.732 55.000 0.00 0.00 36.96 4.40
1535 1655 1.002366 CCGACTCCTGAATTTCGCTG 58.998 55.000 0.00 0.00 0.00 5.18
1550 1670 1.078759 CAGCATCACTTCCGTCCGAC 61.079 60.000 0.00 0.00 0.00 4.79
1567 1687 3.256383 TGAATGAGTTCCCAAATGCACAG 59.744 43.478 0.00 0.00 33.26 3.66
1570 1690 4.087907 TCATGAATGAGTTCCCAAATGCA 58.912 39.130 0.00 0.00 33.26 3.96
1582 1702 2.662866 ACCCAAGGCATCATGAATGAG 58.337 47.619 0.00 0.00 40.64 2.90
1656 1777 3.548770 CCAAGCAAGCCAATCTCATCTA 58.451 45.455 0.00 0.00 0.00 1.98
1670 1792 1.466025 CCTCCAGCAAAGCCAAGCAA 61.466 55.000 0.00 0.00 0.00 3.91
1698 1820 8.303156 TGTTTGAATGAACTTTTTCTCACAAGA 58.697 29.630 0.00 0.00 32.36 3.02
1860 1982 0.038343 CCTGAACCCACAAAATGCGG 60.038 55.000 0.00 0.00 0.00 5.69
1867 1990 1.367346 TAGGCATCCTGAACCCACAA 58.633 50.000 0.00 0.00 34.61 3.33
1904 2027 0.892063 TTCCCCGCAAAACTAATGGC 59.108 50.000 0.00 0.00 0.00 4.40
1917 2040 0.621609 TTTATGTCCCCTGTTCCCCG 59.378 55.000 0.00 0.00 0.00 5.73
1963 2086 2.368875 ACACCTAGAACACCTCCAACAG 59.631 50.000 0.00 0.00 0.00 3.16
1984 2107 8.434392 ACTTTTTCCCACAAGTATCAGTAAGTA 58.566 33.333 0.00 0.00 31.20 2.24
1985 2108 7.287810 ACTTTTTCCCACAAGTATCAGTAAGT 58.712 34.615 0.00 0.00 31.20 2.24
1986 2109 7.745620 ACTTTTTCCCACAAGTATCAGTAAG 57.254 36.000 0.00 0.00 31.20 2.34
1987 2110 7.776030 TGAACTTTTTCCCACAAGTATCAGTAA 59.224 33.333 0.00 0.00 32.74 2.24
2028 2151 2.095718 GCCTCACGGAGAACAAAATCAC 60.096 50.000 2.84 0.00 0.00 3.06
2063 2186 2.540157 GGACACGCAAGGTAACACAAAC 60.540 50.000 0.00 0.00 46.39 2.93
2161 2284 4.600012 ACTCGCAGATTTGAAATAACCG 57.400 40.909 0.00 0.00 33.89 4.44
2181 2304 2.257974 TGTCAGAAGTCATCGCGTAC 57.742 50.000 5.77 3.24 0.00 3.67
2194 2317 4.564782 ATCCAAAGAGAGCAATGTCAGA 57.435 40.909 0.00 0.00 0.00 3.27
2328 2454 7.492669 CCAAACTCAGTTATAGTGACACTATGG 59.507 40.741 30.20 19.45 41.23 2.74
2553 2679 0.820226 AGCATACAAGAGCTGCGAGA 59.180 50.000 0.00 0.00 40.13 4.04
2557 2683 3.873361 TGTCATAAGCATACAAGAGCTGC 59.127 43.478 0.00 0.00 41.70 5.25
2559 2685 5.922053 TCATGTCATAAGCATACAAGAGCT 58.078 37.500 0.00 0.00 44.31 4.09
2972 3136 1.745087 CCTTGACCATCAATTGTCCCG 59.255 52.381 5.13 0.00 35.59 5.14
3027 3191 3.895656 AGATGCGGCCTAGTATAGTTCAA 59.104 43.478 0.00 0.00 36.82 2.69
3252 3416 4.574674 TCAAAGGTGCTAGGATTGTGAT 57.425 40.909 0.00 0.00 0.00 3.06
3391 3555 1.072159 GCTCCCAAGACACAGCAGT 59.928 57.895 0.00 0.00 0.00 4.40
3393 3557 1.227943 GTGCTCCCAAGACACAGCA 60.228 57.895 0.00 0.00 39.58 4.41
3457 3621 9.160412 TGGAAGGAAAATAACATTTAAAAGGGA 57.840 29.630 0.00 0.00 0.00 4.20
3589 3753 8.675504 TGAAAGTAAATTCGTTCAACTGGTTAA 58.324 29.630 0.00 0.00 34.20 2.01
3615 3779 9.627395 GCAGTACATCATCGTTAGATTATAGTT 57.373 33.333 0.00 0.00 34.23 2.24
3616 3780 9.015367 AGCAGTACATCATCGTTAGATTATAGT 57.985 33.333 0.00 0.00 34.23 2.12
3617 3781 9.847706 AAGCAGTACATCATCGTTAGATTATAG 57.152 33.333 0.00 0.00 34.23 1.31
3619 3783 9.627395 GTAAGCAGTACATCATCGTTAGATTAT 57.373 33.333 0.00 0.00 31.75 1.28
3620 3784 7.801783 CGTAAGCAGTACATCATCGTTAGATTA 59.198 37.037 0.00 0.00 31.75 1.75
3623 3787 5.295045 TCGTAAGCAGTACATCATCGTTAGA 59.705 40.000 0.00 0.00 32.45 2.10
3624 3788 5.507974 TCGTAAGCAGTACATCATCGTTAG 58.492 41.667 0.00 0.00 32.45 2.34
3626 3790 4.365899 TCGTAAGCAGTACATCATCGTT 57.634 40.909 0.00 0.00 32.45 3.85
3629 3793 5.763088 TCTCATCGTAAGCAGTACATCATC 58.237 41.667 0.00 0.00 32.45 2.92
3630 3794 5.774498 TCTCATCGTAAGCAGTACATCAT 57.226 39.130 0.00 0.00 32.45 2.45
3633 3797 4.202151 TGCATCTCATCGTAAGCAGTACAT 60.202 41.667 0.00 0.00 32.45 2.29
3634 3798 3.130340 TGCATCTCATCGTAAGCAGTACA 59.870 43.478 0.00 0.00 32.45 2.90
3635 3799 3.706698 TGCATCTCATCGTAAGCAGTAC 58.293 45.455 0.00 0.00 37.18 2.73
3636 3800 4.112634 GTTGCATCTCATCGTAAGCAGTA 58.887 43.478 0.00 0.00 33.14 2.74
3637 3801 2.932614 GTTGCATCTCATCGTAAGCAGT 59.067 45.455 0.00 0.00 33.14 4.40
3638 3802 3.001026 CAGTTGCATCTCATCGTAAGCAG 59.999 47.826 0.00 0.00 33.14 4.24
3639 3803 2.931969 CAGTTGCATCTCATCGTAAGCA 59.068 45.455 0.00 0.00 37.18 3.91
3640 3804 2.932614 ACAGTTGCATCTCATCGTAAGC 59.067 45.455 0.00 0.00 37.18 3.09
3701 3865 6.807720 TCGATTTCAAGCAGTACATAACGTTA 59.192 34.615 11.02 11.02 0.00 3.18
3705 3869 7.061752 AGTTCGATTTCAAGCAGTACATAAC 57.938 36.000 0.00 0.00 0.00 1.89
3713 3877 5.053145 AGGCTATAGTTCGATTTCAAGCAG 58.947 41.667 0.84 0.00 0.00 4.24
3716 3880 9.915629 ATAACTAGGCTATAGTTCGATTTCAAG 57.084 33.333 15.25 0.00 38.55 3.02
3724 3888 8.088981 ACATCCAAATAACTAGGCTATAGTTCG 58.911 37.037 15.25 6.27 38.55 3.95
3733 3897 8.557029 GTGTATTGTACATCCAAATAACTAGGC 58.443 37.037 0.00 0.00 41.34 3.93
3753 3917 3.957497 TGGCCTCAAAACTGTTGTGTATT 59.043 39.130 10.35 0.00 0.00 1.89
3756 3920 1.846007 TGGCCTCAAAACTGTTGTGT 58.154 45.000 10.35 0.00 0.00 3.72
3768 3932 5.633117 TGATTGCATAATAAGATGGCCTCA 58.367 37.500 3.32 0.00 0.00 3.86
3850 4014 5.118990 ACATTTGTGGACGAATCTGGATAG 58.881 41.667 0.00 0.00 0.00 2.08
3852 4016 3.955471 ACATTTGTGGACGAATCTGGAT 58.045 40.909 0.00 0.00 0.00 3.41
3914 4078 3.383185 TCCCAACCACTTTTGATGACAAC 59.617 43.478 0.00 0.00 35.63 3.32
3943 4107 1.001181 GGCTGAGCAAAAGAAATGCCA 59.999 47.619 6.82 0.00 44.91 4.92
4066 4230 0.813610 TAACAATGCGGATGCCCTCG 60.814 55.000 0.00 0.00 41.78 4.63
4069 4233 1.065551 GAGTTAACAATGCGGATGCCC 59.934 52.381 8.61 0.00 41.78 5.36
4073 4237 3.443329 TGCAATGAGTTAACAATGCGGAT 59.557 39.130 8.61 0.00 45.93 4.18
4156 4320 1.131693 ACATTGTGCATGCTCACATCG 59.868 47.619 21.33 12.43 45.26 3.84
4157 4321 2.933495 ACATTGTGCATGCTCACATC 57.067 45.000 21.33 4.61 45.26 3.06
4236 4400 4.352001 TGCTTATAATGGGGAGAGCATTCT 59.648 41.667 0.00 0.00 35.43 2.40
4402 4566 3.881688 CAGAGTTTGAATAGCCCTGGATG 59.118 47.826 0.00 0.00 0.00 3.51
4465 4630 3.188254 CGTCATAGCAGATCGATGTCTCT 59.812 47.826 0.54 0.55 0.00 3.10
4707 4873 7.436933 TGACATTCATCTCCACATCTATGTAC 58.563 38.462 0.00 0.00 39.39 2.90
4708 4874 7.288621 ACTGACATTCATCTCCACATCTATGTA 59.711 37.037 0.00 0.00 39.39 2.29
4709 4875 6.099413 ACTGACATTCATCTCCACATCTATGT 59.901 38.462 0.00 0.00 42.84 2.29
4710 4876 6.424207 CACTGACATTCATCTCCACATCTATG 59.576 42.308 0.00 0.00 0.00 2.23
4752 4919 6.798959 GGAAACAGAGAACAAATCAAAGATCG 59.201 38.462 0.00 0.00 0.00 3.69
4868 5036 2.378547 AGCCTACTCACAAAATTGGGGA 59.621 45.455 0.00 0.00 30.87 4.81
4869 5037 2.807676 AGCCTACTCACAAAATTGGGG 58.192 47.619 0.00 0.00 30.87 4.96
4870 5038 3.193479 GGAAGCCTACTCACAAAATTGGG 59.807 47.826 0.00 0.00 0.00 4.12
4896 5064 6.421801 ACATTTCTTGCTATTCAACTTGCAAC 59.578 34.615 0.00 0.00 39.98 4.17
4916 5084 8.670135 CATTTCAACCATGCATAAATGACATTT 58.330 29.630 20.13 17.19 38.99 2.32
5227 5592 6.435277 AGCAAAGACATGGTAGAATTTCACAT 59.565 34.615 0.00 0.00 0.00 3.21
5336 5701 2.622452 CCAGAAGGCCAACATGGAGATT 60.622 50.000 5.01 0.00 40.96 2.40
5455 5820 8.894409 TTAATTAACAATCTCGTTGAATGCTG 57.106 30.769 0.00 0.00 40.37 4.41
5486 5851 6.160684 TCATCCGGTACAATATGGTTTATCG 58.839 40.000 0.00 0.00 0.00 2.92
5489 5854 5.603395 TCCTCATCCGGTACAATATGGTTTA 59.397 40.000 0.00 0.00 0.00 2.01
5505 5870 4.202472 CCCTTACCTTACCATTCCTCATCC 60.202 50.000 0.00 0.00 0.00 3.51
5530 5895 3.040655 TCTATCCCGGATCAAGGTTCA 57.959 47.619 0.73 0.00 0.00 3.18
5553 5918 1.270252 CCAATGTGTTTTGGGGCTGTC 60.270 52.381 0.00 0.00 42.09 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.