Multiple sequence alignment - TraesCS5D01G512900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G512900 chr5D 100.000 3611 0 0 1 3611 537087054 537090664 0.000000e+00 6669.0
1 TraesCS5D01G512900 chr5D 94.447 2035 60 30 826 2842 537163054 537161055 0.000000e+00 3083.0
2 TraesCS5D01G512900 chr5D 91.339 127 8 3 3103 3228 58137687 58137563 1.720000e-38 171.0
3 TraesCS5D01G512900 chr5D 80.240 167 27 3 3446 3606 458000503 458000669 1.760000e-23 121.0
4 TraesCS5D01G512900 chr5D 80.612 98 13 2 3520 3611 473495558 473495461 1.800000e-08 71.3
5 TraesCS5D01G512900 chr5B 93.953 2530 91 24 106 2622 677545922 677543442 0.000000e+00 3768.0
6 TraesCS5D01G512900 chr5B 95.369 1814 51 17 851 2653 677537296 677539087 0.000000e+00 2854.0
7 TraesCS5D01G512900 chr5B 93.168 161 10 1 2740 2900 677543386 677543227 6.030000e-58 235.0
8 TraesCS5D01G512900 chr5B 92.500 120 7 2 3103 3222 278886870 278886987 1.720000e-38 171.0
9 TraesCS5D01G512900 chr5B 94.444 108 6 0 1 108 677574813 677574706 2.230000e-37 167.0
10 TraesCS5D01G512900 chr5B 88.636 88 5 2 3330 3413 677542983 677542897 6.380000e-18 102.0
11 TraesCS5D01G512900 chr5B 97.619 42 1 0 2674 2715 677543425 677543384 5.000000e-09 73.1
12 TraesCS5D01G512900 chr4A 94.816 1929 61 14 851 2763 633000015 632998110 0.000000e+00 2972.0
13 TraesCS5D01G512900 chr4A 96.763 1699 44 4 990 2684 632989672 632991363 0.000000e+00 2822.0
14 TraesCS5D01G512900 chr4A 84.809 1547 212 19 1024 2557 685834814 685836350 0.000000e+00 1533.0
15 TraesCS5D01G512900 chr4A 86.786 280 36 1 3289 3567 632998008 632997729 9.740000e-81 311.0
16 TraesCS5D01G512900 chr4A 92.623 122 7 2 3114 3235 576122269 576122150 1.330000e-39 174.0
17 TraesCS5D01G512900 chr4A 91.870 123 8 2 3100 3221 594216453 594216332 1.720000e-38 171.0
18 TraesCS5D01G512900 chr4A 91.667 60 4 1 2849 2907 632998064 632998005 8.310000e-12 82.4
19 TraesCS5D01G512900 chr4A 100.000 32 0 0 2784 2815 632998105 632998074 3.890000e-05 60.2
20 TraesCS5D01G512900 chr4D 84.799 1546 218 15 1024 2559 479540668 479542206 0.000000e+00 1537.0
21 TraesCS5D01G512900 chr4D 96.875 32 1 0 3263 3294 15487255 15487224 2.000000e-03 54.7
22 TraesCS5D01G512900 chr4B 84.456 1544 223 14 1024 2557 606764722 606766258 0.000000e+00 1506.0
23 TraesCS5D01G512900 chr4B 81.314 1552 251 33 1026 2547 624862947 624861405 0.000000e+00 1223.0
24 TraesCS5D01G512900 chr4B 91.803 122 6 4 3095 3215 568611135 568611253 2.230000e-37 167.0
25 TraesCS5D01G512900 chr2A 82.850 1551 225 28 1029 2554 18358280 18359814 0.000000e+00 1352.0
26 TraesCS5D01G512900 chr2A 98.148 108 1 1 3114 3221 418825128 418825234 1.710000e-43 187.0
27 TraesCS5D01G512900 chr6A 83.962 212 28 5 2904 3114 608054971 608054765 7.910000e-47 198.0
28 TraesCS5D01G512900 chr6A 92.683 41 3 0 3251 3291 457682880 457682920 3.890000e-05 60.2
29 TraesCS5D01G512900 chr5A 84.390 205 25 5 2906 3108 60122524 60122723 1.020000e-45 195.0
30 TraesCS5D01G512900 chr5A 81.429 210 34 3 2904 3112 303999875 303999670 2.230000e-37 167.0
31 TraesCS5D01G512900 chr5A 76.331 169 30 6 3446 3606 640272059 640271893 8.310000e-12 82.4
32 TraesCS5D01G512900 chrUn 87.898 157 18 1 2906 3061 108277773 108277617 2.210000e-42 183.0
33 TraesCS5D01G512900 chr2D 92.188 128 6 3 3094 3221 272263187 272263064 1.030000e-40 178.0
34 TraesCS5D01G512900 chr2D 79.832 119 16 6 3500 3611 131043567 131043684 2.990000e-11 80.5
35 TraesCS5D01G512900 chr2D 81.188 101 14 4 3516 3611 131003043 131003143 3.870000e-10 76.8
36 TraesCS5D01G512900 chr7B 81.481 216 32 5 2902 3113 300471348 300471559 1.720000e-38 171.0
37 TraesCS5D01G512900 chr7B 90.551 127 10 2 3103 3229 481653663 481653787 2.230000e-37 167.0
38 TraesCS5D01G512900 chr6B 83.978 181 26 3 2902 3081 87526531 87526353 1.720000e-38 171.0
39 TraesCS5D01G512900 chr6B 82.778 180 28 2 2903 3081 81849009 81849186 1.340000e-34 158.0
40 TraesCS5D01G512900 chr6B 77.326 172 32 4 3446 3611 179372466 179372636 1.070000e-15 95.3
41 TraesCS5D01G512900 chr6B 75.145 173 37 3 3444 3610 400356836 400356664 3.870000e-10 76.8
42 TraesCS5D01G512900 chr6B 96.875 32 1 0 3263 3294 191710458 191710427 2.000000e-03 54.7
43 TraesCS5D01G512900 chr6B 96.875 32 1 0 3263 3294 487319510 487319541 2.000000e-03 54.7
44 TraesCS5D01G512900 chr7D 90.698 129 9 3 3114 3241 251359592 251359466 6.200000e-38 169.0
45 TraesCS5D01G512900 chr7D 83.889 180 26 2 2903 3081 439023636 439023459 6.200000e-38 169.0
46 TraesCS5D01G512900 chr7D 82.407 108 11 3 3511 3611 32921605 32921711 1.790000e-13 87.9
47 TraesCS5D01G512900 chr7A 79.808 208 37 3 2906 3112 621407028 621407231 2.910000e-31 147.0
48 TraesCS5D01G512900 chr3A 95.122 41 2 0 3252 3292 555645034 555644994 8.370000e-07 65.8
49 TraesCS5D01G512900 chr3A 95.122 41 2 0 3252 3292 555677693 555677653 8.370000e-07 65.8
50 TraesCS5D01G512900 chr3A 100.000 28 0 0 3442 3469 650447020 650447047 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G512900 chr5D 537087054 537090664 3610 False 6669.000 6669 100.00000 1 3611 1 chr5D.!!$F2 3610
1 TraesCS5D01G512900 chr5D 537161055 537163054 1999 True 3083.000 3083 94.44700 826 2842 1 chr5D.!!$R3 2016
2 TraesCS5D01G512900 chr5B 677537296 677539087 1791 False 2854.000 2854 95.36900 851 2653 1 chr5B.!!$F2 1802
3 TraesCS5D01G512900 chr5B 677542897 677545922 3025 True 1044.525 3768 93.34400 106 3413 4 chr5B.!!$R2 3307
4 TraesCS5D01G512900 chr4A 632989672 632991363 1691 False 2822.000 2822 96.76300 990 2684 1 chr4A.!!$F1 1694
5 TraesCS5D01G512900 chr4A 685834814 685836350 1536 False 1533.000 1533 84.80900 1024 2557 1 chr4A.!!$F2 1533
6 TraesCS5D01G512900 chr4A 632997729 633000015 2286 True 856.400 2972 93.31725 851 3567 4 chr4A.!!$R3 2716
7 TraesCS5D01G512900 chr4D 479540668 479542206 1538 False 1537.000 1537 84.79900 1024 2559 1 chr4D.!!$F1 1535
8 TraesCS5D01G512900 chr4B 606764722 606766258 1536 False 1506.000 1506 84.45600 1024 2557 1 chr4B.!!$F2 1533
9 TraesCS5D01G512900 chr4B 624861405 624862947 1542 True 1223.000 1223 81.31400 1026 2547 1 chr4B.!!$R1 1521
10 TraesCS5D01G512900 chr2A 18358280 18359814 1534 False 1352.000 1352 82.85000 1029 2554 1 chr2A.!!$F1 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.095417 GGTCTCGAGAAACAATGCGC 59.905 55.0 18.55 0.0 0.00 6.09 F
137 138 0.109597 GCCTCAACATTGCTTCGGTG 60.110 55.0 0.00 0.0 0.00 4.94 F
744 748 0.312102 GAACACCAAGTGCTTGAGCC 59.688 55.0 12.99 0.0 42.93 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 1307 1.153168 GCTCTTGCGGCCCATCTTA 60.153 57.895 0.00 0.0 0.0 2.10 R
1545 1565 1.264045 TGATGAGGGTGACGATGCCA 61.264 55.000 0.00 0.0 0.0 4.92 R
2719 2807 0.855349 CTTGCACGTGGATCTATCGC 59.145 55.000 18.88 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.415332 GGACGTCGAGGCAGCGAA 62.415 66.667 9.92 0.00 42.55 4.70
18 19 2.430244 GACGTCGAGGCAGCGAAA 60.430 61.111 4.75 0.00 42.55 3.46
19 20 2.717809 GACGTCGAGGCAGCGAAAC 61.718 63.158 4.75 0.00 42.55 2.78
20 21 3.479269 CGTCGAGGCAGCGAAACC 61.479 66.667 4.07 0.00 42.55 3.27
21 22 2.357034 GTCGAGGCAGCGAAACCA 60.357 61.111 4.07 0.00 42.55 3.67
22 23 1.741770 GTCGAGGCAGCGAAACCAT 60.742 57.895 4.07 0.00 42.55 3.55
23 24 0.459585 GTCGAGGCAGCGAAACCATA 60.460 55.000 4.07 0.00 42.55 2.74
24 25 0.464036 TCGAGGCAGCGAAACCATAT 59.536 50.000 0.00 0.00 37.35 1.78
25 26 0.583438 CGAGGCAGCGAAACCATATG 59.417 55.000 0.00 0.00 0.00 1.78
26 27 0.947244 GAGGCAGCGAAACCATATGG 59.053 55.000 20.68 20.68 42.17 2.74
41 42 5.818136 CCATATGGTTACTCTTTGTGTGG 57.182 43.478 14.09 0.00 0.00 4.17
42 43 4.096382 CCATATGGTTACTCTTTGTGTGGC 59.904 45.833 14.09 0.00 0.00 5.01
43 44 1.975660 TGGTTACTCTTTGTGTGGCC 58.024 50.000 0.00 0.00 0.00 5.36
44 45 0.872388 GGTTACTCTTTGTGTGGCCG 59.128 55.000 0.00 0.00 0.00 6.13
45 46 1.541670 GGTTACTCTTTGTGTGGCCGA 60.542 52.381 0.00 0.00 0.00 5.54
46 47 1.798813 GTTACTCTTTGTGTGGCCGAG 59.201 52.381 0.00 0.00 0.00 4.63
47 48 0.320374 TACTCTTTGTGTGGCCGAGG 59.680 55.000 0.00 0.00 0.00 4.63
48 49 1.071471 CTCTTTGTGTGGCCGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
49 50 0.951040 CTCTTTGTGTGGCCGAGGTC 60.951 60.000 0.00 0.00 0.00 3.85
50 51 1.966451 CTTTGTGTGGCCGAGGTCC 60.966 63.158 0.00 0.00 0.00 4.46
51 52 2.397413 CTTTGTGTGGCCGAGGTCCT 62.397 60.000 0.00 0.00 0.00 3.85
52 53 2.674563 TTTGTGTGGCCGAGGTCCTG 62.675 60.000 0.00 0.00 0.00 3.86
53 54 4.394712 GTGTGGCCGAGGTCCTGG 62.395 72.222 0.00 0.00 0.00 4.45
54 55 4.954118 TGTGGCCGAGGTCCTGGT 62.954 66.667 0.00 0.00 0.00 4.00
55 56 4.083862 GTGGCCGAGGTCCTGGTC 62.084 72.222 0.00 0.00 0.00 4.02
56 57 4.316823 TGGCCGAGGTCCTGGTCT 62.317 66.667 0.00 0.00 0.00 3.85
57 58 3.462678 GGCCGAGGTCCTGGTCTC 61.463 72.222 0.00 8.88 0.00 3.36
62 63 3.267908 GAGGTCCTGGTCTCGAGAA 57.732 57.895 18.55 0.91 0.00 2.87
63 64 1.546961 GAGGTCCTGGTCTCGAGAAA 58.453 55.000 18.55 7.83 0.00 2.52
64 65 1.202817 GAGGTCCTGGTCTCGAGAAAC 59.797 57.143 18.55 13.84 0.00 2.78
65 66 0.966920 GGTCCTGGTCTCGAGAAACA 59.033 55.000 18.55 17.71 0.00 2.83
66 67 1.343465 GGTCCTGGTCTCGAGAAACAA 59.657 52.381 18.55 2.79 0.00 2.83
67 68 2.028020 GGTCCTGGTCTCGAGAAACAAT 60.028 50.000 18.55 0.00 0.00 2.71
68 69 2.996621 GTCCTGGTCTCGAGAAACAATG 59.003 50.000 18.55 12.64 0.00 2.82
69 70 1.734465 CCTGGTCTCGAGAAACAATGC 59.266 52.381 18.55 2.23 0.00 3.56
70 71 1.391485 CTGGTCTCGAGAAACAATGCG 59.609 52.381 18.55 4.06 0.00 4.73
71 72 0.095417 GGTCTCGAGAAACAATGCGC 59.905 55.000 18.55 0.00 0.00 6.09
72 73 1.071605 GTCTCGAGAAACAATGCGCT 58.928 50.000 18.55 0.00 0.00 5.92
73 74 1.059835 GTCTCGAGAAACAATGCGCTC 59.940 52.381 18.55 0.00 0.00 5.03
74 75 4.632288 CGAGAAACAATGCGCTCG 57.368 55.556 9.73 2.46 43.25 5.03
75 76 1.059369 CGAGAAACAATGCGCTCGG 59.941 57.895 9.73 0.00 44.58 4.63
76 77 1.626654 CGAGAAACAATGCGCTCGGT 61.627 55.000 9.73 0.00 44.58 4.69
77 78 0.179215 GAGAAACAATGCGCTCGGTG 60.179 55.000 9.73 3.69 0.00 4.94
78 79 1.154225 GAAACAATGCGCTCGGTGG 60.154 57.895 9.73 0.00 0.00 4.61
79 80 1.573829 GAAACAATGCGCTCGGTGGA 61.574 55.000 9.73 0.00 0.00 4.02
80 81 1.169661 AAACAATGCGCTCGGTGGAA 61.170 50.000 9.73 0.00 0.00 3.53
81 82 1.577328 AACAATGCGCTCGGTGGAAG 61.577 55.000 9.73 0.00 0.00 3.46
82 83 2.436646 AATGCGCTCGGTGGAAGG 60.437 61.111 9.73 0.00 0.00 3.46
83 84 3.976701 AATGCGCTCGGTGGAAGGG 62.977 63.158 9.73 0.00 0.00 3.95
87 88 3.647771 GCTCGGTGGAAGGGGGTT 61.648 66.667 0.00 0.00 0.00 4.11
88 89 2.351276 CTCGGTGGAAGGGGGTTG 59.649 66.667 0.00 0.00 0.00 3.77
89 90 2.448931 TCGGTGGAAGGGGGTTGT 60.449 61.111 0.00 0.00 0.00 3.32
90 91 1.152074 TCGGTGGAAGGGGGTTGTA 60.152 57.895 0.00 0.00 0.00 2.41
91 92 1.002990 CGGTGGAAGGGGGTTGTAC 60.003 63.158 0.00 0.00 0.00 2.90
92 93 1.486145 CGGTGGAAGGGGGTTGTACT 61.486 60.000 0.00 0.00 0.00 2.73
93 94 0.775542 GGTGGAAGGGGGTTGTACTT 59.224 55.000 0.00 0.00 0.00 2.24
94 95 1.987368 GGTGGAAGGGGGTTGTACTTA 59.013 52.381 0.00 0.00 0.00 2.24
95 96 2.579400 GGTGGAAGGGGGTTGTACTTAT 59.421 50.000 0.00 0.00 0.00 1.73
96 97 3.617284 GTGGAAGGGGGTTGTACTTATG 58.383 50.000 0.00 0.00 0.00 1.90
97 98 3.264964 GTGGAAGGGGGTTGTACTTATGA 59.735 47.826 0.00 0.00 0.00 2.15
98 99 3.521937 TGGAAGGGGGTTGTACTTATGAG 59.478 47.826 0.00 0.00 0.00 2.90
99 100 3.522343 GGAAGGGGGTTGTACTTATGAGT 59.478 47.826 0.00 0.00 39.97 3.41
100 101 4.018688 GGAAGGGGGTTGTACTTATGAGTT 60.019 45.833 0.00 0.00 37.33 3.01
101 102 5.190330 GGAAGGGGGTTGTACTTATGAGTTA 59.810 44.000 0.00 0.00 37.33 2.24
102 103 6.126565 GGAAGGGGGTTGTACTTATGAGTTAT 60.127 42.308 0.00 0.00 37.33 1.89
103 104 6.248569 AGGGGGTTGTACTTATGAGTTATG 57.751 41.667 0.00 0.00 37.33 1.90
104 105 5.968167 AGGGGGTTGTACTTATGAGTTATGA 59.032 40.000 0.00 0.00 37.33 2.15
105 106 6.619852 AGGGGGTTGTACTTATGAGTTATGAT 59.380 38.462 0.00 0.00 37.33 2.45
106 107 6.710744 GGGGGTTGTACTTATGAGTTATGATG 59.289 42.308 0.00 0.00 37.33 3.07
107 108 6.204882 GGGGTTGTACTTATGAGTTATGATGC 59.795 42.308 0.00 0.00 37.33 3.91
108 109 6.073765 GGGTTGTACTTATGAGTTATGATGCG 60.074 42.308 0.00 0.00 37.33 4.73
133 134 1.668047 GCACTGCCTCAACATTGCTTC 60.668 52.381 0.00 0.00 41.52 3.86
137 138 0.109597 GCCTCAACATTGCTTCGGTG 60.110 55.000 0.00 0.00 0.00 4.94
200 201 4.812476 TTGATCGACGCGCCCCAG 62.812 66.667 5.73 0.00 0.00 4.45
246 247 2.806608 GACCGTAGAAAGTGTGGTCA 57.193 50.000 4.90 0.00 46.55 4.02
249 250 4.813027 GACCGTAGAAAGTGTGGTCAATA 58.187 43.478 4.90 0.00 46.55 1.90
276 277 0.886490 CAGGGTCTTGTGTGAGCACC 60.886 60.000 0.00 0.00 44.65 5.01
302 303 0.757188 AGGGCTCCTCGACATAGTGG 60.757 60.000 0.00 0.00 0.00 4.00
361 362 2.696506 GGAGGACTTACCGGAGTTTTG 58.303 52.381 9.46 0.00 44.74 2.44
429 430 1.063417 AGGGCCCATCCTGAAATTCAG 60.063 52.381 27.56 15.64 43.91 3.02
440 441 4.500499 CTGAAATTCAGGGGAGATCAGT 57.500 45.455 14.85 0.00 40.71 3.41
441 442 4.197750 CTGAAATTCAGGGGAGATCAGTG 58.802 47.826 14.85 0.00 40.71 3.66
442 443 3.845992 TGAAATTCAGGGGAGATCAGTGA 59.154 43.478 0.00 0.00 0.00 3.41
443 444 4.080695 TGAAATTCAGGGGAGATCAGTGAG 60.081 45.833 0.00 0.00 0.00 3.51
469 470 5.126707 GGGAGAAAGATCAGTCCGTTAACTA 59.873 44.000 3.71 0.00 0.00 2.24
481 484 9.740239 TCAGTCCGTTAACTATAAATATCACAC 57.260 33.333 3.71 0.00 0.00 3.82
524 527 6.459161 GCTCAGATATTGACATGTTGCATTCA 60.459 38.462 0.00 0.00 0.00 2.57
568 571 1.393539 CCTTGTTAACGACCGAGCATG 59.606 52.381 0.26 0.00 0.00 4.06
575 578 0.389948 ACGACCGAGCATGGAAACTC 60.390 55.000 0.69 0.00 0.00 3.01
586 589 0.846427 TGGAAACTCCCCAGGATGCT 60.846 55.000 0.00 0.00 35.03 3.79
587 590 1.213296 GGAAACTCCCCAGGATGCTA 58.787 55.000 0.00 0.00 31.97 3.49
588 591 1.564348 GGAAACTCCCCAGGATGCTAA 59.436 52.381 0.00 0.00 31.97 3.09
589 592 2.644676 GAAACTCCCCAGGATGCTAAC 58.355 52.381 0.00 0.00 31.97 2.34
617 620 1.655484 ATGAAACATCATGCTCGCGA 58.345 45.000 9.26 9.26 0.00 5.87
644 647 7.032580 AGCTTAGACAAGAGCGCATATAATAG 58.967 38.462 11.47 0.00 43.53 1.73
647 650 9.279904 CTTAGACAAGAGCGCATATAATAGTAC 57.720 37.037 11.47 0.00 33.20 2.73
649 652 5.399858 ACAAGAGCGCATATAATAGTACGG 58.600 41.667 11.47 0.00 0.00 4.02
656 659 6.017275 AGCGCATATAATAGTACGGGAGATAC 60.017 42.308 11.47 0.00 0.00 2.24
699 703 2.666989 GCTAGACTAGCGTGTTGGC 58.333 57.895 18.38 0.00 42.62 4.52
744 748 0.312102 GAACACCAAGTGCTTGAGCC 59.688 55.000 12.99 0.00 42.93 4.70
745 749 0.395586 AACACCAAGTGCTTGAGCCA 60.396 50.000 12.99 0.00 42.93 4.75
746 750 0.820891 ACACCAAGTGCTTGAGCCAG 60.821 55.000 12.99 0.00 42.93 4.85
747 751 1.900498 ACCAAGTGCTTGAGCCAGC 60.900 57.895 12.99 0.00 42.93 4.85
748 752 1.602888 CCAAGTGCTTGAGCCAGCT 60.603 57.895 12.99 0.00 42.93 4.24
749 753 1.579932 CAAGTGCTTGAGCCAGCTG 59.420 57.895 6.78 6.78 42.93 4.24
750 754 1.602888 AAGTGCTTGAGCCAGCTGG 60.603 57.895 29.34 29.34 40.79 4.85
761 765 3.793144 CAGCTGGCCGCGAACTTC 61.793 66.667 8.23 0.00 45.59 3.01
781 785 2.480555 CGCGCCTTGCCAACTAAG 59.519 61.111 0.00 0.00 42.08 2.18
782 786 2.179267 GCGCCTTGCCAACTAAGC 59.821 61.111 0.00 0.00 37.76 3.09
785 789 1.668419 CGCCTTGCCAACTAAGCTAT 58.332 50.000 0.00 0.00 0.00 2.97
791 795 2.632377 TGCCAACTAAGCTATGCTCAC 58.368 47.619 0.00 0.00 38.25 3.51
940 949 1.297012 GCGACGTCGTCTAGCTCTG 60.297 63.158 35.48 7.57 42.22 3.35
947 964 2.077627 GTCGTCTAGCTCTGACACTCA 58.922 52.381 16.64 0.00 34.37 3.41
950 967 2.159585 CGTCTAGCTCTGACACTCACAG 60.160 54.545 16.64 0.00 34.37 3.66
951 968 2.817258 GTCTAGCTCTGACACTCACAGT 59.183 50.000 13.02 0.00 36.81 3.55
952 969 3.078097 TCTAGCTCTGACACTCACAGTC 58.922 50.000 0.00 0.00 36.81 3.51
953 970 1.697284 AGCTCTGACACTCACAGTCA 58.303 50.000 0.00 0.00 43.23 3.41
954 971 1.339610 AGCTCTGACACTCACAGTCAC 59.660 52.381 0.00 0.00 40.80 3.67
955 972 1.067669 GCTCTGACACTCACAGTCACA 59.932 52.381 0.00 0.00 40.80 3.58
957 974 2.099405 TCTGACACTCACAGTCACACA 58.901 47.619 0.00 0.00 40.80 3.72
958 975 2.695147 TCTGACACTCACAGTCACACAT 59.305 45.455 0.00 0.00 40.80 3.21
961 978 1.942657 ACACTCACAGTCACACATTGC 59.057 47.619 0.00 0.00 0.00 3.56
962 979 1.265095 CACTCACAGTCACACATTGCC 59.735 52.381 0.00 0.00 0.00 4.52
963 980 0.514255 CTCACAGTCACACATTGCCG 59.486 55.000 0.00 0.00 0.00 5.69
964 981 1.081906 CACAGTCACACATTGCCGC 60.082 57.895 0.00 0.00 0.00 6.53
966 983 3.049674 AGTCACACATTGCCGCGG 61.050 61.111 24.05 24.05 0.00 6.46
967 984 4.759096 GTCACACATTGCCGCGGC 62.759 66.667 42.35 42.35 42.35 6.53
971 988 4.354939 CACATTGCCGCGGCCAAA 62.355 61.111 44.42 33.57 41.09 3.28
972 989 4.356442 ACATTGCCGCGGCCAAAC 62.356 61.111 44.42 20.27 41.09 2.93
982 999 4.735358 GGCCAAACGTCCCTCCCC 62.735 72.222 0.00 0.00 0.00 4.81
983 1000 3.647771 GCCAAACGTCCCTCCCCT 61.648 66.667 0.00 0.00 0.00 4.79
984 1001 2.351276 CCAAACGTCCCTCCCCTG 59.649 66.667 0.00 0.00 0.00 4.45
2731 2823 3.124128 TGATACGTACGCGATAGATCCAC 59.876 47.826 15.93 0.00 42.00 4.02
2834 2930 0.599558 TCAATCAACTTGCAGCTGCC 59.400 50.000 34.64 17.82 41.18 4.85
2885 2981 0.035458 AGCTACCACTTGCTCCACAC 59.965 55.000 0.00 0.00 33.90 3.82
2887 2983 1.941668 GCTACCACTTGCTCCACACTC 60.942 57.143 0.00 0.00 0.00 3.51
2901 2997 2.015736 ACACTCGGTGAATGATGAGC 57.984 50.000 10.46 0.00 36.96 4.26
2903 2999 1.134580 CACTCGGTGAATGATGAGCCT 60.135 52.381 0.00 0.00 35.23 4.58
2904 3000 2.101415 CACTCGGTGAATGATGAGCCTA 59.899 50.000 0.00 0.00 35.23 3.93
2905 3001 2.766263 ACTCGGTGAATGATGAGCCTAA 59.234 45.455 0.00 0.00 31.64 2.69
2906 3002 3.181471 ACTCGGTGAATGATGAGCCTAAG 60.181 47.826 0.00 0.00 31.64 2.18
2920 3016 3.543680 GCCTAAGGCTTGTCATAGTGA 57.456 47.619 10.69 0.00 46.69 3.41
2921 3017 3.462021 GCCTAAGGCTTGTCATAGTGAG 58.538 50.000 10.69 0.00 46.69 3.51
2922 3018 3.133003 GCCTAAGGCTTGTCATAGTGAGA 59.867 47.826 10.69 0.00 46.69 3.27
2923 3019 4.739137 GCCTAAGGCTTGTCATAGTGAGAG 60.739 50.000 10.69 0.00 46.69 3.20
2924 3020 4.404073 CCTAAGGCTTGTCATAGTGAGAGT 59.596 45.833 10.69 0.00 0.00 3.24
2925 3021 5.594725 CCTAAGGCTTGTCATAGTGAGAGTA 59.405 44.000 10.69 0.00 0.00 2.59
2926 3022 6.096987 CCTAAGGCTTGTCATAGTGAGAGTAA 59.903 42.308 10.69 0.00 0.00 2.24
2927 3023 5.331876 AGGCTTGTCATAGTGAGAGTAAC 57.668 43.478 0.00 0.00 0.00 2.50
2928 3024 5.020132 AGGCTTGTCATAGTGAGAGTAACT 58.980 41.667 0.00 0.00 0.00 2.24
2929 3025 5.482175 AGGCTTGTCATAGTGAGAGTAACTT 59.518 40.000 0.00 0.00 0.00 2.66
2930 3026 6.663953 AGGCTTGTCATAGTGAGAGTAACTTA 59.336 38.462 0.00 0.00 0.00 2.24
2931 3027 7.343316 AGGCTTGTCATAGTGAGAGTAACTTAT 59.657 37.037 0.00 0.00 0.00 1.73
2932 3028 8.630917 GGCTTGTCATAGTGAGAGTAACTTATA 58.369 37.037 0.00 0.00 0.00 0.98
2933 3029 9.453325 GCTTGTCATAGTGAGAGTAACTTATAC 57.547 37.037 0.00 0.00 0.00 1.47
2944 3040 9.967346 TGAGAGTAACTTATACTAATGTCATGC 57.033 33.333 0.00 0.00 0.00 4.06
2945 3041 9.967346 GAGAGTAACTTATACTAATGTCATGCA 57.033 33.333 0.00 0.00 0.00 3.96
3012 3108 4.844349 AACAGTAGTGTTATGGATGGCT 57.156 40.909 14.37 0.00 45.48 4.75
3013 3109 4.844349 ACAGTAGTGTTATGGATGGCTT 57.156 40.909 0.00 0.00 30.30 4.35
3014 3110 4.770795 ACAGTAGTGTTATGGATGGCTTC 58.229 43.478 0.00 0.00 30.30 3.86
3015 3111 4.225042 ACAGTAGTGTTATGGATGGCTTCA 59.775 41.667 0.00 0.00 30.30 3.02
3016 3112 5.104360 ACAGTAGTGTTATGGATGGCTTCAT 60.104 40.000 0.00 0.00 30.30 2.57
3017 3113 5.824624 CAGTAGTGTTATGGATGGCTTCATT 59.175 40.000 2.60 0.00 0.00 2.57
3018 3114 6.319658 CAGTAGTGTTATGGATGGCTTCATTT 59.680 38.462 2.60 0.00 0.00 2.32
3019 3115 7.498900 CAGTAGTGTTATGGATGGCTTCATTTA 59.501 37.037 2.60 0.00 0.00 1.40
3020 3116 8.220559 AGTAGTGTTATGGATGGCTTCATTTAT 58.779 33.333 2.60 0.00 0.00 1.40
3021 3117 7.902920 AGTGTTATGGATGGCTTCATTTATT 57.097 32.000 2.60 0.00 0.00 1.40
3022 3118 8.995027 AGTGTTATGGATGGCTTCATTTATTA 57.005 30.769 2.60 0.00 0.00 0.98
3023 3119 9.420118 AGTGTTATGGATGGCTTCATTTATTAA 57.580 29.630 2.60 0.00 0.00 1.40
3024 3120 9.463443 GTGTTATGGATGGCTTCATTTATTAAC 57.537 33.333 2.60 2.51 0.00 2.01
3025 3121 9.420118 TGTTATGGATGGCTTCATTTATTAACT 57.580 29.630 2.60 0.00 0.00 2.24
3053 3149 7.913674 AGACTCATAATTTCTCAGGAAACAC 57.086 36.000 0.00 0.00 43.16 3.32
3054 3150 7.684529 AGACTCATAATTTCTCAGGAAACACT 58.315 34.615 0.00 0.00 43.16 3.55
3055 3151 8.816894 AGACTCATAATTTCTCAGGAAACACTA 58.183 33.333 0.00 0.00 43.16 2.74
3056 3152 9.606631 GACTCATAATTTCTCAGGAAACACTAT 57.393 33.333 0.00 0.00 43.16 2.12
3057 3153 9.388506 ACTCATAATTTCTCAGGAAACACTATG 57.611 33.333 0.00 0.00 43.16 2.23
3058 3154 9.388506 CTCATAATTTCTCAGGAAACACTATGT 57.611 33.333 0.00 0.00 43.16 2.29
3059 3155 9.739276 TCATAATTTCTCAGGAAACACTATGTT 57.261 29.630 0.00 0.00 43.41 2.71
3102 3198 9.490379 TGTTATTCTAAACACCTCTTTCTTCTC 57.510 33.333 0.00 0.00 34.50 2.87
3103 3199 9.490379 GTTATTCTAAACACCTCTTTCTTCTCA 57.510 33.333 0.00 0.00 0.00 3.27
3108 3204 9.490379 TCTAAACACCTCTTTCTTCTCATTAAC 57.510 33.333 0.00 0.00 0.00 2.01
3109 3205 9.495572 CTAAACACCTCTTTCTTCTCATTAACT 57.504 33.333 0.00 0.00 0.00 2.24
3111 3207 8.834749 AACACCTCTTTCTTCTCATTAACTAC 57.165 34.615 0.00 0.00 0.00 2.73
3112 3208 7.963532 ACACCTCTTTCTTCTCATTAACTACA 58.036 34.615 0.00 0.00 0.00 2.74
3113 3209 8.598041 ACACCTCTTTCTTCTCATTAACTACAT 58.402 33.333 0.00 0.00 0.00 2.29
3119 3215 9.535878 CTTTCTTCTCATTAACTACATACTCCC 57.464 37.037 0.00 0.00 0.00 4.30
3120 3216 8.840200 TTCTTCTCATTAACTACATACTCCCT 57.160 34.615 0.00 0.00 0.00 4.20
3121 3217 8.466617 TCTTCTCATTAACTACATACTCCCTC 57.533 38.462 0.00 0.00 0.00 4.30
3122 3218 7.506261 TCTTCTCATTAACTACATACTCCCTCC 59.494 40.741 0.00 0.00 0.00 4.30
3123 3219 5.768662 TCTCATTAACTACATACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
3124 3220 5.452255 TCATTAACTACATACTCCCTCCGT 58.548 41.667 0.00 0.00 0.00 4.69
3125 3221 5.895534 TCATTAACTACATACTCCCTCCGTT 59.104 40.000 0.00 0.00 0.00 4.44
3126 3222 6.381994 TCATTAACTACATACTCCCTCCGTTT 59.618 38.462 0.00 0.00 0.00 3.60
3127 3223 4.732672 AACTACATACTCCCTCCGTTTC 57.267 45.455 0.00 0.00 0.00 2.78
3128 3224 3.029570 ACTACATACTCCCTCCGTTTCC 58.970 50.000 0.00 0.00 0.00 3.13
3129 3225 1.946984 ACATACTCCCTCCGTTTCCA 58.053 50.000 0.00 0.00 0.00 3.53
3130 3226 2.262637 ACATACTCCCTCCGTTTCCAA 58.737 47.619 0.00 0.00 0.00 3.53
3131 3227 2.640826 ACATACTCCCTCCGTTTCCAAA 59.359 45.455 0.00 0.00 0.00 3.28
3132 3228 3.265995 ACATACTCCCTCCGTTTCCAAAT 59.734 43.478 0.00 0.00 0.00 2.32
3133 3229 2.971901 ACTCCCTCCGTTTCCAAATT 57.028 45.000 0.00 0.00 0.00 1.82
3134 3230 5.045432 ACATACTCCCTCCGTTTCCAAATTA 60.045 40.000 0.00 0.00 0.00 1.40
3135 3231 3.682696 ACTCCCTCCGTTTCCAAATTAC 58.317 45.455 0.00 0.00 0.00 1.89
3136 3232 3.329814 ACTCCCTCCGTTTCCAAATTACT 59.670 43.478 0.00 0.00 0.00 2.24
3137 3233 3.939592 CTCCCTCCGTTTCCAAATTACTC 59.060 47.826 0.00 0.00 0.00 2.59
3138 3234 2.676342 CCCTCCGTTTCCAAATTACTCG 59.324 50.000 0.00 0.00 0.00 4.18
3139 3235 3.332034 CCTCCGTTTCCAAATTACTCGT 58.668 45.455 0.00 0.00 0.00 4.18
3140 3236 3.370061 CCTCCGTTTCCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
3141 3237 2.988493 TCCGTTTCCAAATTACTCGTCG 59.012 45.455 0.00 0.00 0.00 5.12
3142 3238 2.473376 CCGTTTCCAAATTACTCGTCGC 60.473 50.000 0.00 0.00 0.00 5.19
3143 3239 2.156117 CGTTTCCAAATTACTCGTCGCA 59.844 45.455 0.00 0.00 0.00 5.10
3144 3240 3.720920 CGTTTCCAAATTACTCGTCGCAG 60.721 47.826 0.00 0.00 0.00 5.18
3145 3241 3.306917 TTCCAAATTACTCGTCGCAGA 57.693 42.857 0.00 0.00 0.00 4.26
3146 3242 3.306917 TCCAAATTACTCGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
3147 3243 3.655486 TCCAAATTACTCGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
3148 3244 4.250464 TCCAAATTACTCGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
3149 3245 4.092821 TCCAAATTACTCGTCGCAGAAATG 59.907 41.667 0.00 0.00 39.69 2.32
3150 3246 4.334443 CAAATTACTCGTCGCAGAAATGG 58.666 43.478 0.00 0.00 39.69 3.16
3151 3247 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
3152 3248 3.520290 TTACTCGTCGCAGAAATGGAT 57.480 42.857 0.00 0.00 39.69 3.41
3153 3249 1.645034 ACTCGTCGCAGAAATGGATG 58.355 50.000 0.00 0.00 39.69 3.51
3154 3250 1.066858 ACTCGTCGCAGAAATGGATGT 60.067 47.619 0.00 0.00 39.69 3.06
3155 3251 2.165641 ACTCGTCGCAGAAATGGATGTA 59.834 45.455 0.00 0.00 39.69 2.29
3156 3252 3.181475 ACTCGTCGCAGAAATGGATGTAT 60.181 43.478 0.00 0.00 39.69 2.29
3157 3253 3.381045 TCGTCGCAGAAATGGATGTATC 58.619 45.455 0.00 0.00 39.69 2.24
3158 3254 3.068165 TCGTCGCAGAAATGGATGTATCT 59.932 43.478 0.00 0.00 39.69 1.98
3159 3255 4.277423 TCGTCGCAGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 39.69 1.98
3160 3256 4.982295 CGTCGCAGAAATGGATGTATCTAA 59.018 41.667 0.00 0.00 39.69 2.10
3161 3257 5.462068 CGTCGCAGAAATGGATGTATCTAAA 59.538 40.000 0.00 0.00 39.69 1.85
3162 3258 6.019075 CGTCGCAGAAATGGATGTATCTAAAA 60.019 38.462 0.00 0.00 39.69 1.52
3163 3259 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
3164 3260 7.011482 GTCGCAGAAATGGATGTATCTAAAACT 59.989 37.037 0.00 0.00 39.69 2.66
3165 3261 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
3166 3262 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
3194 3290 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
3195 3291 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
3196 3292 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
3197 3293 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
3198 3294 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
3199 3295 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
3200 3296 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
3201 3297 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
3202 3298 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
3203 3299 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
3204 3300 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
3205 3301 6.374333 ACATCCATACTTGCGACAAGTAATTT 59.626 34.615 25.44 13.70 36.45 1.82
3206 3302 6.176975 TCCATACTTGCGACAAGTAATTTG 57.823 37.500 25.44 20.61 42.68 2.32
3207 3303 5.123186 TCCATACTTGCGACAAGTAATTTGG 59.877 40.000 25.46 25.46 41.25 3.28
3208 3304 5.123186 CCATACTTGCGACAAGTAATTTGGA 59.877 40.000 26.28 13.61 41.25 3.53
3209 3305 6.348950 CCATACTTGCGACAAGTAATTTGGAA 60.349 38.462 26.28 13.14 41.25 3.53
3210 3306 4.855531 ACTTGCGACAAGTAATTTGGAAC 58.144 39.130 19.21 0.00 41.25 3.62
3211 3307 3.529634 TGCGACAAGTAATTTGGAACG 57.470 42.857 0.00 0.00 41.25 3.95
3212 3308 2.224549 TGCGACAAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 41.25 4.44
3213 3309 2.481185 GCGACAAGTAATTTGGAACGGA 59.519 45.455 0.00 0.00 41.25 4.69
3214 3310 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
3215 3311 3.991773 CGACAAGTAATTTGGAACGGAGA 59.008 43.478 0.00 0.00 41.25 3.71
3216 3312 4.449743 CGACAAGTAATTTGGAACGGAGAA 59.550 41.667 0.00 0.00 41.25 2.87
3217 3313 5.049954 CGACAAGTAATTTGGAACGGAGAAA 60.050 40.000 0.00 0.00 41.25 2.52
3218 3314 6.313744 ACAAGTAATTTGGAACGGAGAAAG 57.686 37.500 0.00 0.00 41.25 2.62
3219 3315 5.826208 ACAAGTAATTTGGAACGGAGAAAGT 59.174 36.000 0.00 0.00 41.25 2.66
3220 3316 6.993902 ACAAGTAATTTGGAACGGAGAAAGTA 59.006 34.615 0.00 0.00 41.25 2.24
3221 3317 7.041576 ACAAGTAATTTGGAACGGAGAAAGTAC 60.042 37.037 0.00 0.00 41.25 2.73
3222 3318 5.936372 AGTAATTTGGAACGGAGAAAGTACC 59.064 40.000 0.00 0.00 32.99 3.34
3223 3319 3.842007 TTTGGAACGGAGAAAGTACCA 57.158 42.857 0.00 0.00 0.00 3.25
3224 3320 2.825861 TGGAACGGAGAAAGTACCAC 57.174 50.000 0.00 0.00 0.00 4.16
3225 3321 2.040939 TGGAACGGAGAAAGTACCACA 58.959 47.619 0.00 0.00 0.00 4.17
3226 3322 2.635915 TGGAACGGAGAAAGTACCACAT 59.364 45.455 0.00 0.00 0.00 3.21
3227 3323 3.833650 TGGAACGGAGAAAGTACCACATA 59.166 43.478 0.00 0.00 0.00 2.29
3228 3324 4.283978 TGGAACGGAGAAAGTACCACATAA 59.716 41.667 0.00 0.00 0.00 1.90
3229 3325 4.868734 GGAACGGAGAAAGTACCACATAAG 59.131 45.833 0.00 0.00 0.00 1.73
3230 3326 3.858247 ACGGAGAAAGTACCACATAAGC 58.142 45.455 0.00 0.00 0.00 3.09
3231 3327 3.259876 ACGGAGAAAGTACCACATAAGCA 59.740 43.478 0.00 0.00 0.00 3.91
3232 3328 4.250464 CGGAGAAAGTACCACATAAGCAA 58.750 43.478 0.00 0.00 0.00 3.91
3233 3329 4.693566 CGGAGAAAGTACCACATAAGCAAA 59.306 41.667 0.00 0.00 0.00 3.68
3234 3330 5.180492 CGGAGAAAGTACCACATAAGCAAAA 59.820 40.000 0.00 0.00 0.00 2.44
3235 3331 6.293735 CGGAGAAAGTACCACATAAGCAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
3258 3354 6.393720 AAAATTTGAAATGCGCTATGTCAC 57.606 33.333 9.73 0.00 32.68 3.67
3259 3355 4.970662 ATTTGAAATGCGCTATGTCACT 57.029 36.364 9.73 0.00 32.68 3.41
3260 3356 6.435430 AATTTGAAATGCGCTATGTCACTA 57.565 33.333 9.73 3.21 32.68 2.74
3261 3357 5.871465 TTTGAAATGCGCTATGTCACTAA 57.129 34.783 9.73 1.51 32.68 2.24
3262 3358 4.857871 TGAAATGCGCTATGTCACTAAC 57.142 40.909 9.73 0.00 27.75 2.34
3263 3359 4.503910 TGAAATGCGCTATGTCACTAACT 58.496 39.130 9.73 0.00 27.75 2.24
3264 3360 5.656480 TGAAATGCGCTATGTCACTAACTA 58.344 37.500 9.73 0.00 27.75 2.24
3265 3361 6.103330 TGAAATGCGCTATGTCACTAACTAA 58.897 36.000 9.73 0.00 27.75 2.24
3266 3362 6.255670 TGAAATGCGCTATGTCACTAACTAAG 59.744 38.462 9.73 0.00 27.75 2.18
3267 3363 4.713824 TGCGCTATGTCACTAACTAAGT 57.286 40.909 9.73 0.00 39.81 2.24
3268 3364 5.068234 TGCGCTATGTCACTAACTAAGTT 57.932 39.130 9.73 0.00 35.76 2.66
3269 3365 6.198650 TGCGCTATGTCACTAACTAAGTTA 57.801 37.500 9.73 0.00 35.76 2.24
3270 3366 6.032094 TGCGCTATGTCACTAACTAAGTTAC 58.968 40.000 9.73 0.00 35.76 2.50
3271 3367 6.127814 TGCGCTATGTCACTAACTAAGTTACT 60.128 38.462 9.73 0.00 35.76 2.24
3272 3368 6.750963 GCGCTATGTCACTAACTAAGTTACTT 59.249 38.462 0.00 2.32 35.76 2.24
3273 3369 7.275123 GCGCTATGTCACTAACTAAGTTACTTT 59.725 37.037 1.94 0.00 35.76 2.66
3274 3370 8.796278 CGCTATGTCACTAACTAAGTTACTTTC 58.204 37.037 1.94 0.00 35.76 2.62
3275 3371 9.635520 GCTATGTCACTAACTAAGTTACTTTCA 57.364 33.333 1.94 0.00 35.76 2.69
3286 3382 9.857957 AACTAAGTTACTTTCACTATGACTAGC 57.142 33.333 1.94 0.00 0.00 3.42
3287 3383 8.468399 ACTAAGTTACTTTCACTATGACTAGCC 58.532 37.037 1.94 0.00 0.00 3.93
3375 3683 3.875727 CTGTAATTGCACTCTGAGATGGG 59.124 47.826 12.44 0.00 0.00 4.00
3402 3714 7.947782 ACTTTAATTAGAGATCCCACCCATA 57.052 36.000 9.85 0.00 0.00 2.74
3410 3722 4.140591 AGAGATCCCACCCATAGATCTTCA 60.141 45.833 0.00 0.00 45.19 3.02
3421 3733 6.097412 ACCCATAGATCTTCATTTTGCCTTTC 59.903 38.462 0.00 0.00 0.00 2.62
3425 3737 5.947443 AGATCTTCATTTTGCCTTTCTTCG 58.053 37.500 0.00 0.00 0.00 3.79
3430 3742 4.389374 TCATTTTGCCTTTCTTCGTCTCT 58.611 39.130 0.00 0.00 0.00 3.10
3448 3760 1.846439 TCTCTTTGGATGGGCTTAGGG 59.154 52.381 0.00 0.00 0.00 3.53
3452 3764 0.185901 TTGGATGGGCTTAGGGCATC 59.814 55.000 0.00 2.03 44.01 3.91
3468 3780 0.179129 CATCTTCAATGGCAACCCGC 60.179 55.000 0.00 0.00 41.28 6.13
3469 3781 0.323725 ATCTTCAATGGCAACCCGCT 60.324 50.000 0.00 0.00 41.91 5.52
3473 3785 1.173043 TCAATGGCAACCCGCTAAAG 58.827 50.000 0.00 0.00 41.91 1.85
3480 3792 0.392595 CAACCCGCTAAAGTCCTCCC 60.393 60.000 0.00 0.00 0.00 4.30
3481 3793 1.896122 AACCCGCTAAAGTCCTCCCG 61.896 60.000 0.00 0.00 0.00 5.14
3482 3794 2.356780 CCCGCTAAAGTCCTCCCGT 61.357 63.158 0.00 0.00 0.00 5.28
3485 3797 1.411612 CCGCTAAAGTCCTCCCGTATT 59.588 52.381 0.00 0.00 0.00 1.89
3489 3801 3.869832 GCTAAAGTCCTCCCGTATTTGTC 59.130 47.826 0.00 0.00 0.00 3.18
3494 3806 1.488812 TCCTCCCGTATTTGTCCATGG 59.511 52.381 4.97 4.97 0.00 3.66
3496 3808 2.561569 CTCCCGTATTTGTCCATGGAC 58.438 52.381 33.97 33.97 44.77 4.02
3508 3821 2.091665 GTCCATGGACAAGGGGATCAAT 60.092 50.000 35.21 0.00 44.02 2.57
3509 3822 2.586838 TCCATGGACAAGGGGATCAATT 59.413 45.455 11.44 0.00 0.00 2.32
3511 3824 2.418368 TGGACAAGGGGATCAATTCG 57.582 50.000 0.00 0.00 0.00 3.34
3514 3827 0.251916 ACAAGGGGATCAATTCGCGA 59.748 50.000 3.71 3.71 38.15 5.87
3518 3831 1.134098 AGGGGATCAATTCGCGAACAT 60.134 47.619 26.00 16.18 38.15 2.71
3524 3837 1.063912 TCAATTCGCGAACATGGATGC 59.936 47.619 26.00 0.00 0.00 3.91
3538 3851 1.153086 GATGCAGGAGGACGCCATT 60.153 57.895 0.00 0.00 0.00 3.16
3542 3855 1.372087 GCAGGAGGACGCCATTCAAG 61.372 60.000 0.00 0.00 0.00 3.02
3543 3856 1.078143 AGGAGGACGCCATTCAAGC 60.078 57.895 0.00 0.00 0.00 4.01
3558 3871 7.182761 GCCATTCAAGCGTAACATCATATATC 58.817 38.462 0.00 0.00 0.00 1.63
3561 3874 6.262193 TCAAGCGTAACATCATATATCCGA 57.738 37.500 0.00 0.00 0.00 4.55
3567 3880 8.035394 AGCGTAACATCATATATCCGATCTTTT 58.965 33.333 0.00 0.00 0.00 2.27
3568 3881 8.656849 GCGTAACATCATATATCCGATCTTTTT 58.343 33.333 0.00 0.00 0.00 1.94
3590 3903 4.811555 TTTTCAAGTCCACACGATCAAG 57.188 40.909 0.00 0.00 0.00 3.02
3591 3904 3.469008 TTCAAGTCCACACGATCAAGT 57.531 42.857 0.00 0.00 0.00 3.16
3592 3905 4.594123 TTCAAGTCCACACGATCAAGTA 57.406 40.909 0.00 0.00 0.00 2.24
3593 3906 4.174411 TCAAGTCCACACGATCAAGTAG 57.826 45.455 0.00 0.00 0.00 2.57
3594 3907 2.656560 AGTCCACACGATCAAGTAGC 57.343 50.000 0.00 0.00 0.00 3.58
3595 3908 1.204941 AGTCCACACGATCAAGTAGCC 59.795 52.381 0.00 0.00 0.00 3.93
3596 3909 0.172578 TCCACACGATCAAGTAGCCG 59.827 55.000 0.00 0.00 0.00 5.52
3597 3910 1.421410 CCACACGATCAAGTAGCCGC 61.421 60.000 0.00 0.00 0.00 6.53
3598 3911 0.735978 CACACGATCAAGTAGCCGCA 60.736 55.000 0.00 0.00 0.00 5.69
3599 3912 0.175760 ACACGATCAAGTAGCCGCAT 59.824 50.000 0.00 0.00 0.00 4.73
3600 3913 0.578683 CACGATCAAGTAGCCGCATG 59.421 55.000 0.00 0.00 0.00 4.06
3601 3914 1.154205 ACGATCAAGTAGCCGCATGC 61.154 55.000 7.91 7.91 41.71 4.06
3602 3915 1.153597 CGATCAAGTAGCCGCATGCA 61.154 55.000 19.57 0.00 44.83 3.96
3603 3916 1.016627 GATCAAGTAGCCGCATGCAA 58.983 50.000 19.57 0.00 44.83 4.08
3604 3917 1.401552 GATCAAGTAGCCGCATGCAAA 59.598 47.619 19.57 0.00 44.83 3.68
3605 3918 0.804364 TCAAGTAGCCGCATGCAAAG 59.196 50.000 19.57 6.76 44.83 2.77
3606 3919 0.179156 CAAGTAGCCGCATGCAAAGG 60.179 55.000 19.57 12.18 44.83 3.11
3607 3920 1.315257 AAGTAGCCGCATGCAAAGGG 61.315 55.000 19.57 11.79 44.83 3.95
3608 3921 2.046285 GTAGCCGCATGCAAAGGGT 61.046 57.895 19.57 18.17 44.83 4.34
3609 3922 0.746563 GTAGCCGCATGCAAAGGGTA 60.747 55.000 19.57 17.12 44.83 3.69
3610 3923 0.746563 TAGCCGCATGCAAAGGGTAC 60.747 55.000 19.57 0.00 44.83 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.909258 TTTCGCTGCCTCGACGTCC 62.909 63.158 10.58 0.00 38.30 4.79
2 3 2.733593 GTTTCGCTGCCTCGACGT 60.734 61.111 0.00 0.00 38.30 4.34
3 4 3.479269 GGTTTCGCTGCCTCGACG 61.479 66.667 0.00 0.00 38.30 5.12
4 5 0.459585 TATGGTTTCGCTGCCTCGAC 60.460 55.000 0.00 0.00 38.30 4.20
5 6 0.464036 ATATGGTTTCGCTGCCTCGA 59.536 50.000 0.00 0.00 36.60 4.04
6 7 0.583438 CATATGGTTTCGCTGCCTCG 59.417 55.000 0.00 0.00 0.00 4.63
7 8 0.947244 CCATATGGTTTCGCTGCCTC 59.053 55.000 14.09 0.00 0.00 4.70
8 9 3.100545 CCATATGGTTTCGCTGCCT 57.899 52.632 14.09 0.00 0.00 4.75
19 20 4.096382 GCCACACAAAGAGTAACCATATGG 59.904 45.833 20.68 20.68 42.17 2.74
20 21 4.096382 GGCCACACAAAGAGTAACCATATG 59.904 45.833 0.00 0.00 0.00 1.78
21 22 4.270008 GGCCACACAAAGAGTAACCATAT 58.730 43.478 0.00 0.00 0.00 1.78
22 23 3.681593 GGCCACACAAAGAGTAACCATA 58.318 45.455 0.00 0.00 0.00 2.74
23 24 2.514803 GGCCACACAAAGAGTAACCAT 58.485 47.619 0.00 0.00 0.00 3.55
24 25 1.812324 CGGCCACACAAAGAGTAACCA 60.812 52.381 2.24 0.00 0.00 3.67
25 26 0.872388 CGGCCACACAAAGAGTAACC 59.128 55.000 2.24 0.00 0.00 2.85
26 27 1.798813 CTCGGCCACACAAAGAGTAAC 59.201 52.381 2.24 0.00 0.00 2.50
27 28 1.270625 CCTCGGCCACACAAAGAGTAA 60.271 52.381 2.24 0.00 0.00 2.24
28 29 0.320374 CCTCGGCCACACAAAGAGTA 59.680 55.000 2.24 0.00 0.00 2.59
29 30 1.071471 CCTCGGCCACACAAAGAGT 59.929 57.895 2.24 0.00 0.00 3.24
30 31 0.951040 GACCTCGGCCACACAAAGAG 60.951 60.000 2.24 0.00 0.00 2.85
31 32 1.070786 GACCTCGGCCACACAAAGA 59.929 57.895 2.24 0.00 0.00 2.52
32 33 1.966451 GGACCTCGGCCACACAAAG 60.966 63.158 2.24 0.00 0.00 2.77
33 34 2.112297 GGACCTCGGCCACACAAA 59.888 61.111 2.24 0.00 0.00 2.83
34 35 2.847234 AGGACCTCGGCCACACAA 60.847 61.111 2.24 0.00 0.00 3.33
35 36 3.625897 CAGGACCTCGGCCACACA 61.626 66.667 2.24 0.00 0.00 3.72
36 37 4.394712 CCAGGACCTCGGCCACAC 62.395 72.222 2.24 0.00 0.00 3.82
37 38 4.954118 ACCAGGACCTCGGCCACA 62.954 66.667 2.24 0.00 0.00 4.17
38 39 4.083862 GACCAGGACCTCGGCCAC 62.084 72.222 2.24 0.00 0.00 5.01
39 40 4.316823 AGACCAGGACCTCGGCCA 62.317 66.667 2.24 0.00 0.00 5.36
40 41 3.462678 GAGACCAGGACCTCGGCC 61.463 72.222 9.24 0.00 0.00 6.13
41 42 3.827898 CGAGACCAGGACCTCGGC 61.828 72.222 20.89 0.00 45.93 5.54
44 45 1.202817 GTTTCTCGAGACCAGGACCTC 59.797 57.143 16.36 0.00 0.00 3.85
45 46 1.258676 GTTTCTCGAGACCAGGACCT 58.741 55.000 16.36 0.00 0.00 3.85
46 47 0.966920 TGTTTCTCGAGACCAGGACC 59.033 55.000 16.36 0.00 0.00 4.46
47 48 2.814280 TTGTTTCTCGAGACCAGGAC 57.186 50.000 16.36 9.51 0.00 3.85
48 49 2.612972 GCATTGTTTCTCGAGACCAGGA 60.613 50.000 16.36 0.00 0.00 3.86
49 50 1.734465 GCATTGTTTCTCGAGACCAGG 59.266 52.381 16.36 11.55 0.00 4.45
50 51 1.391485 CGCATTGTTTCTCGAGACCAG 59.609 52.381 16.36 5.51 0.00 4.00
51 52 1.428448 CGCATTGTTTCTCGAGACCA 58.572 50.000 16.36 12.23 0.00 4.02
52 53 0.095417 GCGCATTGTTTCTCGAGACC 59.905 55.000 16.36 9.50 0.00 3.85
53 54 1.059835 GAGCGCATTGTTTCTCGAGAC 59.940 52.381 16.36 5.91 0.00 3.36
54 55 1.350193 GAGCGCATTGTTTCTCGAGA 58.650 50.000 12.08 12.08 0.00 4.04
55 56 3.865914 GAGCGCATTGTTTCTCGAG 57.134 52.632 11.47 5.93 0.00 4.04
57 58 1.059369 CCGAGCGCATTGTTTCTCG 59.941 57.895 11.47 7.37 45.50 4.04
58 59 0.179215 CACCGAGCGCATTGTTTCTC 60.179 55.000 11.47 0.00 0.00 2.87
59 60 1.577328 CCACCGAGCGCATTGTTTCT 61.577 55.000 11.47 0.00 0.00 2.52
60 61 1.154225 CCACCGAGCGCATTGTTTC 60.154 57.895 11.47 0.00 0.00 2.78
61 62 1.169661 TTCCACCGAGCGCATTGTTT 61.170 50.000 11.47 0.00 0.00 2.83
62 63 1.577328 CTTCCACCGAGCGCATTGTT 61.577 55.000 11.47 0.00 0.00 2.83
63 64 2.031919 TTCCACCGAGCGCATTGT 59.968 55.556 11.47 0.00 0.00 2.71
64 65 2.753966 CCTTCCACCGAGCGCATTG 61.754 63.158 11.47 0.00 0.00 2.82
65 66 2.436646 CCTTCCACCGAGCGCATT 60.437 61.111 11.47 0.00 0.00 3.56
66 67 4.473520 CCCTTCCACCGAGCGCAT 62.474 66.667 11.47 0.00 0.00 4.73
70 71 3.647771 AACCCCCTTCCACCGAGC 61.648 66.667 0.00 0.00 0.00 5.03
71 72 1.196104 TACAACCCCCTTCCACCGAG 61.196 60.000 0.00 0.00 0.00 4.63
72 73 1.152074 TACAACCCCCTTCCACCGA 60.152 57.895 0.00 0.00 0.00 4.69
73 74 1.002990 GTACAACCCCCTTCCACCG 60.003 63.158 0.00 0.00 0.00 4.94
74 75 0.775542 AAGTACAACCCCCTTCCACC 59.224 55.000 0.00 0.00 0.00 4.61
75 76 3.264964 TCATAAGTACAACCCCCTTCCAC 59.735 47.826 0.00 0.00 0.00 4.02
76 77 3.521937 CTCATAAGTACAACCCCCTTCCA 59.478 47.826 0.00 0.00 0.00 3.53
77 78 3.522343 ACTCATAAGTACAACCCCCTTCC 59.478 47.826 0.00 0.00 32.59 3.46
78 79 4.838904 ACTCATAAGTACAACCCCCTTC 57.161 45.455 0.00 0.00 32.59 3.46
79 80 6.445786 TCATAACTCATAAGTACAACCCCCTT 59.554 38.462 0.00 0.00 33.48 3.95
80 81 5.968167 TCATAACTCATAAGTACAACCCCCT 59.032 40.000 0.00 0.00 33.48 4.79
81 82 6.243216 TCATAACTCATAAGTACAACCCCC 57.757 41.667 0.00 0.00 33.48 5.40
82 83 6.204882 GCATCATAACTCATAAGTACAACCCC 59.795 42.308 0.00 0.00 33.48 4.95
83 84 6.073765 CGCATCATAACTCATAAGTACAACCC 60.074 42.308 0.00 0.00 33.48 4.11
84 85 6.700081 TCGCATCATAACTCATAAGTACAACC 59.300 38.462 0.00 0.00 33.48 3.77
85 86 7.096023 CCTCGCATCATAACTCATAAGTACAAC 60.096 40.741 0.00 0.00 33.48 3.32
86 87 6.923508 CCTCGCATCATAACTCATAAGTACAA 59.076 38.462 0.00 0.00 33.48 2.41
87 88 6.447162 CCTCGCATCATAACTCATAAGTACA 58.553 40.000 0.00 0.00 33.48 2.90
88 89 5.864474 CCCTCGCATCATAACTCATAAGTAC 59.136 44.000 0.00 0.00 33.48 2.73
89 90 5.047306 CCCCTCGCATCATAACTCATAAGTA 60.047 44.000 0.00 0.00 33.48 2.24
90 91 4.262635 CCCCTCGCATCATAACTCATAAGT 60.263 45.833 0.00 0.00 37.32 2.24
91 92 4.248859 CCCCTCGCATCATAACTCATAAG 58.751 47.826 0.00 0.00 0.00 1.73
92 93 3.557054 GCCCCTCGCATCATAACTCATAA 60.557 47.826 0.00 0.00 37.47 1.90
93 94 2.028112 GCCCCTCGCATCATAACTCATA 60.028 50.000 0.00 0.00 37.47 2.15
94 95 1.271054 GCCCCTCGCATCATAACTCAT 60.271 52.381 0.00 0.00 37.47 2.90
95 96 0.106708 GCCCCTCGCATCATAACTCA 59.893 55.000 0.00 0.00 37.47 3.41
96 97 0.106708 TGCCCCTCGCATCATAACTC 59.893 55.000 0.00 0.00 44.64 3.01
97 98 2.220953 TGCCCCTCGCATCATAACT 58.779 52.632 0.00 0.00 44.64 2.24
98 99 4.876701 TGCCCCTCGCATCATAAC 57.123 55.556 0.00 0.00 44.64 1.89
133 134 0.516877 CTGGCACAATGTACACACCG 59.483 55.000 0.00 0.00 38.70 4.94
137 138 0.523072 CCTGCTGGCACAATGTACAC 59.477 55.000 0.00 0.00 38.70 2.90
200 201 1.135083 CCGACATGACACCACCTACTC 60.135 57.143 0.00 0.00 0.00 2.59
207 208 0.530744 GCTACTCCGACATGACACCA 59.469 55.000 0.00 0.00 0.00 4.17
257 258 2.621763 GTGCTCACACAAGACCCTG 58.378 57.895 0.00 0.00 46.61 4.45
293 294 5.269505 AGTGCAGAGAATACCACTATGTC 57.730 43.478 0.00 0.00 36.82 3.06
302 303 5.378292 TCATATCCGAGTGCAGAGAATAC 57.622 43.478 0.00 0.00 0.00 1.89
361 362 3.200593 CACATCAGCTGAGCCCGC 61.201 66.667 22.96 0.00 0.00 6.13
368 369 7.143340 CCAATCAAAATATACCACATCAGCTG 58.857 38.462 7.63 7.63 0.00 4.24
429 430 1.768077 CCCCCTCACTGATCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
430 431 0.762461 CTCCCCCTCACTGATCTCCC 60.762 65.000 0.00 0.00 0.00 4.30
431 432 0.263172 TCTCCCCCTCACTGATCTCC 59.737 60.000 0.00 0.00 0.00 3.71
432 433 2.166907 TTCTCCCCCTCACTGATCTC 57.833 55.000 0.00 0.00 0.00 2.75
433 434 2.045047 TCTTTCTCCCCCTCACTGATCT 59.955 50.000 0.00 0.00 0.00 2.75
434 435 2.472029 TCTTTCTCCCCCTCACTGATC 58.528 52.381 0.00 0.00 0.00 2.92
435 436 2.649742 TCTTTCTCCCCCTCACTGAT 57.350 50.000 0.00 0.00 0.00 2.90
436 437 2.225624 TGATCTTTCTCCCCCTCACTGA 60.226 50.000 0.00 0.00 0.00 3.41
437 438 2.170187 CTGATCTTTCTCCCCCTCACTG 59.830 54.545 0.00 0.00 0.00 3.66
438 439 2.225753 ACTGATCTTTCTCCCCCTCACT 60.226 50.000 0.00 0.00 0.00 3.41
439 440 2.169561 GACTGATCTTTCTCCCCCTCAC 59.830 54.545 0.00 0.00 0.00 3.51
440 441 2.472029 GACTGATCTTTCTCCCCCTCA 58.528 52.381 0.00 0.00 0.00 3.86
441 442 1.765904 GGACTGATCTTTCTCCCCCTC 59.234 57.143 0.00 0.00 0.00 4.30
442 443 1.886422 GGACTGATCTTTCTCCCCCT 58.114 55.000 0.00 0.00 0.00 4.79
443 444 0.466124 CGGACTGATCTTTCTCCCCC 59.534 60.000 0.00 0.00 0.00 5.40
481 484 6.198687 TCTGAGCAAAAATGTTTGACTTACG 58.801 36.000 12.75 2.83 45.99 3.18
539 542 7.041635 TCGGTCGTTAACAAGGATATCATTA 57.958 36.000 1.67 0.00 0.00 1.90
540 543 5.909477 TCGGTCGTTAACAAGGATATCATT 58.091 37.500 6.39 0.00 0.00 2.57
550 553 1.001068 TCCATGCTCGGTCGTTAACAA 59.999 47.619 6.39 0.00 0.00 2.83
554 557 1.274167 AGTTTCCATGCTCGGTCGTTA 59.726 47.619 0.00 0.00 0.00 3.18
560 563 1.452108 GGGGAGTTTCCATGCTCGG 60.452 63.158 0.00 0.00 38.64 4.63
568 571 1.213296 TAGCATCCTGGGGAGTTTCC 58.787 55.000 0.00 0.00 34.05 3.13
575 578 4.567318 GCTGTTAGCATCCTGGGG 57.433 61.111 0.00 0.00 41.89 4.96
586 589 5.388408 TGATGTTTCATTGCATGCTGTTA 57.612 34.783 20.33 1.96 0.00 2.41
587 590 4.260139 TGATGTTTCATTGCATGCTGTT 57.740 36.364 20.33 0.06 0.00 3.16
588 591 3.945981 TGATGTTTCATTGCATGCTGT 57.054 38.095 20.33 4.25 0.00 4.40
589 592 4.777140 CATGATGTTTCATTGCATGCTG 57.223 40.909 20.33 10.07 40.70 4.41
617 620 0.891373 TGCGCTCTTGTCTAAGCTCT 59.109 50.000 9.73 0.00 36.35 4.09
644 647 9.301153 TCGTTTTTATTTTAGTATCTCCCGTAC 57.699 33.333 0.00 0.00 0.00 3.67
647 650 8.538039 GTCTCGTTTTTATTTTAGTATCTCCCG 58.462 37.037 0.00 0.00 0.00 5.14
649 652 9.374838 TGGTCTCGTTTTTATTTTAGTATCTCC 57.625 33.333 0.00 0.00 0.00 3.71
656 659 7.534239 GCTCAGTTGGTCTCGTTTTTATTTTAG 59.466 37.037 0.00 0.00 0.00 1.85
662 665 4.067972 AGCTCAGTTGGTCTCGTTTTTA 57.932 40.909 0.00 0.00 0.00 1.52
714 718 3.086282 ACTTGGTGTTCACGGAGTTTTT 58.914 40.909 0.00 0.00 41.61 1.94
722 726 1.003545 CTCAAGCACTTGGTGTTCACG 60.004 52.381 10.35 0.00 40.78 4.35
723 727 1.268743 GCTCAAGCACTTGGTGTTCAC 60.269 52.381 10.35 0.00 40.78 3.18
727 731 0.820891 CTGGCTCAAGCACTTGGTGT 60.821 55.000 10.35 0.00 44.36 4.16
744 748 3.793144 GAAGTTCGCGGCCAGCTG 61.793 66.667 6.78 6.78 45.59 4.24
755 759 4.445545 CAAGGCGCGCGGAAGTTC 62.446 66.667 33.06 13.48 0.00 3.01
763 767 3.667429 CTTAGTTGGCAAGGCGCGC 62.667 63.158 25.94 25.94 43.84 6.86
820 824 1.328680 CGCAGCTGGTAATCACATCAC 59.671 52.381 17.12 0.00 0.00 3.06
821 825 1.655484 CGCAGCTGGTAATCACATCA 58.345 50.000 17.12 0.00 0.00 3.07
822 826 0.940126 CCGCAGCTGGTAATCACATC 59.060 55.000 17.12 0.00 0.00 3.06
823 827 1.097547 GCCGCAGCTGGTAATCACAT 61.098 55.000 17.12 0.00 35.50 3.21
824 828 1.745115 GCCGCAGCTGGTAATCACA 60.745 57.895 17.12 0.00 35.50 3.58
924 933 1.077123 TGTCAGAGCTAGACGACGTC 58.923 55.000 20.25 20.25 38.83 4.34
925 934 0.797542 GTGTCAGAGCTAGACGACGT 59.202 55.000 0.00 0.00 38.83 4.34
940 949 2.032549 GCAATGTGTGACTGTGAGTGTC 60.033 50.000 0.00 0.00 35.21 3.67
947 964 2.606961 CGCGGCAATGTGTGACTGT 61.607 57.895 0.00 0.00 30.19 3.55
950 967 4.759096 GCCGCGGCAATGTGTGAC 62.759 66.667 43.55 11.09 41.49 3.67
954 971 4.354939 TTTGGCCGCGGCAATGTG 62.355 61.111 46.88 12.53 46.84 3.21
955 972 4.356442 GTTTGGCCGCGGCAATGT 62.356 61.111 46.88 0.00 46.84 2.71
966 983 3.647771 AGGGGAGGGACGTTTGGC 61.648 66.667 0.00 0.00 0.00 4.52
967 984 2.185310 CTCAGGGGAGGGACGTTTGG 62.185 65.000 0.00 0.00 37.51 3.28
968 985 1.296715 CTCAGGGGAGGGACGTTTG 59.703 63.158 0.00 0.00 37.51 2.93
970 987 3.003763 GCTCAGGGGAGGGACGTT 61.004 66.667 0.00 0.00 41.67 3.99
971 988 4.316823 TGCTCAGGGGAGGGACGT 62.317 66.667 0.00 0.00 41.67 4.34
972 989 3.465403 CTGCTCAGGGGAGGGACG 61.465 72.222 0.00 0.00 41.67 4.79
973 990 3.791586 GCTGCTCAGGGGAGGGAC 61.792 72.222 0.00 0.00 41.67 4.46
974 991 4.337304 TGCTGCTCAGGGGAGGGA 62.337 66.667 0.00 0.00 41.67 4.20
975 992 3.795041 CTGCTGCTCAGGGGAGGG 61.795 72.222 0.00 0.00 41.67 4.30
976 993 4.486503 GCTGCTGCTCAGGGGAGG 62.487 72.222 8.53 0.00 43.06 4.30
977 994 3.683966 CTGCTGCTGCTCAGGGGAG 62.684 68.421 17.00 0.00 43.06 4.30
978 995 3.714001 CTGCTGCTGCTCAGGGGA 61.714 66.667 17.00 0.00 43.06 4.81
980 997 4.717313 TGCTGCTGCTGCTCAGGG 62.717 66.667 27.67 3.49 43.06 4.45
981 998 3.128188 CTGCTGCTGCTGCTCAGG 61.128 66.667 27.67 13.92 43.06 3.86
1020 1040 4.031129 CTGAGCACCTGCAGCCCT 62.031 66.667 8.66 3.25 45.16 5.19
1287 1307 1.153168 GCTCTTGCGGCCCATCTTA 60.153 57.895 0.00 0.00 0.00 2.10
1545 1565 1.264045 TGATGAGGGTGACGATGCCA 61.264 55.000 0.00 0.00 0.00 4.92
2719 2807 0.855349 CTTGCACGTGGATCTATCGC 59.145 55.000 18.88 0.00 0.00 4.58
2731 2823 3.542712 ATTGCTTTGAGTACTTGCACG 57.457 42.857 11.45 0.00 33.13 5.34
2834 2930 2.118683 CTTTGACCGTTGCACACATTG 58.881 47.619 0.00 0.00 0.00 2.82
2881 2977 1.662629 GCTCATCATTCACCGAGTGTG 59.337 52.381 4.33 0.00 46.88 3.82
2885 2981 3.388308 CTTAGGCTCATCATTCACCGAG 58.612 50.000 0.00 0.00 0.00 4.63
2887 2983 2.487934 CCTTAGGCTCATCATTCACCG 58.512 52.381 0.00 0.00 0.00 4.94
2901 2997 4.404073 ACTCTCACTATGACAAGCCTTAGG 59.596 45.833 0.00 0.00 0.00 2.69
2903 2999 6.663953 AGTTACTCTCACTATGACAAGCCTTA 59.336 38.462 0.00 0.00 0.00 2.69
2904 3000 5.482175 AGTTACTCTCACTATGACAAGCCTT 59.518 40.000 0.00 0.00 0.00 4.35
2905 3001 5.020132 AGTTACTCTCACTATGACAAGCCT 58.980 41.667 0.00 0.00 0.00 4.58
2906 3002 5.331876 AGTTACTCTCACTATGACAAGCC 57.668 43.478 0.00 0.00 0.00 4.35
2918 3014 9.967346 GCATGACATTAGTATAAGTTACTCTCA 57.033 33.333 0.00 0.00 0.00 3.27
2919 3015 9.967346 TGCATGACATTAGTATAAGTTACTCTC 57.033 33.333 0.00 0.00 0.00 3.20
2990 3086 5.950544 AGCCATCCATAACACTACTGTTA 57.049 39.130 0.00 0.00 45.06 2.41
2991 3087 4.844349 AGCCATCCATAACACTACTGTT 57.156 40.909 0.00 0.00 43.39 3.16
2992 3088 4.225042 TGAAGCCATCCATAACACTACTGT 59.775 41.667 0.00 0.00 0.00 3.55
2993 3089 4.769688 TGAAGCCATCCATAACACTACTG 58.230 43.478 0.00 0.00 0.00 2.74
2994 3090 5.636903 ATGAAGCCATCCATAACACTACT 57.363 39.130 0.00 0.00 0.00 2.57
2995 3091 6.699575 AAATGAAGCCATCCATAACACTAC 57.300 37.500 0.00 0.00 31.40 2.73
2996 3092 8.995027 AATAAATGAAGCCATCCATAACACTA 57.005 30.769 0.00 0.00 31.40 2.74
2997 3093 7.902920 AATAAATGAAGCCATCCATAACACT 57.097 32.000 0.00 0.00 31.40 3.55
2998 3094 9.463443 GTTAATAAATGAAGCCATCCATAACAC 57.537 33.333 0.00 0.00 31.40 3.32
2999 3095 9.420118 AGTTAATAAATGAAGCCATCCATAACA 57.580 29.630 0.00 0.00 31.40 2.41
3027 3123 9.606631 GTGTTTCCTGAGAAATTATGAGTCTAT 57.393 33.333 0.00 0.00 43.67 1.98
3028 3124 8.816894 AGTGTTTCCTGAGAAATTATGAGTCTA 58.183 33.333 0.00 0.00 43.67 2.59
3029 3125 7.684529 AGTGTTTCCTGAGAAATTATGAGTCT 58.315 34.615 0.00 0.00 43.67 3.24
3030 3126 7.913674 AGTGTTTCCTGAGAAATTATGAGTC 57.086 36.000 0.00 0.00 43.67 3.36
3031 3127 9.388506 CATAGTGTTTCCTGAGAAATTATGAGT 57.611 33.333 9.59 0.00 43.67 3.41
3032 3128 9.388506 ACATAGTGTTTCCTGAGAAATTATGAG 57.611 33.333 16.16 0.00 43.67 2.90
3033 3129 9.739276 AACATAGTGTTTCCTGAGAAATTATGA 57.261 29.630 16.16 0.00 43.67 2.15
3076 3172 9.490379 GAGAAGAAAGAGGTGTTTAGAATAACA 57.510 33.333 0.00 0.00 35.75 2.41
3077 3173 9.490379 TGAGAAGAAAGAGGTGTTTAGAATAAC 57.510 33.333 0.00 0.00 0.00 1.89
3082 3178 9.490379 GTTAATGAGAAGAAAGAGGTGTTTAGA 57.510 33.333 0.00 0.00 0.00 2.10
3083 3179 9.495572 AGTTAATGAGAAGAAAGAGGTGTTTAG 57.504 33.333 0.00 0.00 0.00 1.85
3085 3181 9.274206 GTAGTTAATGAGAAGAAAGAGGTGTTT 57.726 33.333 0.00 0.00 0.00 2.83
3086 3182 8.429641 TGTAGTTAATGAGAAGAAAGAGGTGTT 58.570 33.333 0.00 0.00 0.00 3.32
3087 3183 7.963532 TGTAGTTAATGAGAAGAAAGAGGTGT 58.036 34.615 0.00 0.00 0.00 4.16
3093 3189 9.535878 GGGAGTATGTAGTTAATGAGAAGAAAG 57.464 37.037 0.00 0.00 0.00 2.62
3094 3190 9.268282 AGGGAGTATGTAGTTAATGAGAAGAAA 57.732 33.333 0.00 0.00 0.00 2.52
3095 3191 8.840200 AGGGAGTATGTAGTTAATGAGAAGAA 57.160 34.615 0.00 0.00 0.00 2.52
3096 3192 7.506261 GGAGGGAGTATGTAGTTAATGAGAAGA 59.494 40.741 0.00 0.00 0.00 2.87
3097 3193 7.522399 CGGAGGGAGTATGTAGTTAATGAGAAG 60.522 44.444 0.00 0.00 0.00 2.85
3098 3194 6.264744 CGGAGGGAGTATGTAGTTAATGAGAA 59.735 42.308 0.00 0.00 0.00 2.87
3099 3195 5.768662 CGGAGGGAGTATGTAGTTAATGAGA 59.231 44.000 0.00 0.00 0.00 3.27
3100 3196 5.535406 ACGGAGGGAGTATGTAGTTAATGAG 59.465 44.000 0.00 0.00 0.00 2.90
3101 3197 5.452255 ACGGAGGGAGTATGTAGTTAATGA 58.548 41.667 0.00 0.00 0.00 2.57
3102 3198 5.786264 ACGGAGGGAGTATGTAGTTAATG 57.214 43.478 0.00 0.00 0.00 1.90
3103 3199 6.183360 GGAAACGGAGGGAGTATGTAGTTAAT 60.183 42.308 0.00 0.00 0.00 1.40
3104 3200 5.127682 GGAAACGGAGGGAGTATGTAGTTAA 59.872 44.000 0.00 0.00 0.00 2.01
3105 3201 4.646492 GGAAACGGAGGGAGTATGTAGTTA 59.354 45.833 0.00 0.00 0.00 2.24
3106 3202 3.450096 GGAAACGGAGGGAGTATGTAGTT 59.550 47.826 0.00 0.00 0.00 2.24
3107 3203 3.029570 GGAAACGGAGGGAGTATGTAGT 58.970 50.000 0.00 0.00 0.00 2.73
3108 3204 3.028850 TGGAAACGGAGGGAGTATGTAG 58.971 50.000 0.00 0.00 0.00 2.74
3109 3205 3.104519 TGGAAACGGAGGGAGTATGTA 57.895 47.619 0.00 0.00 0.00 2.29
3110 3206 1.946984 TGGAAACGGAGGGAGTATGT 58.053 50.000 0.00 0.00 0.00 2.29
3111 3207 3.343941 TTTGGAAACGGAGGGAGTATG 57.656 47.619 0.00 0.00 0.00 2.39
3112 3208 4.586306 AATTTGGAAACGGAGGGAGTAT 57.414 40.909 0.00 0.00 0.00 2.12
3113 3209 4.533311 AGTAATTTGGAAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
3114 3210 2.971901 AATTTGGAAACGGAGGGAGT 57.028 45.000 0.00 0.00 0.00 3.85
3115 3211 3.939592 GAGTAATTTGGAAACGGAGGGAG 59.060 47.826 0.00 0.00 0.00 4.30
3116 3212 3.618019 CGAGTAATTTGGAAACGGAGGGA 60.618 47.826 0.00 0.00 0.00 4.20
3117 3213 2.676342 CGAGTAATTTGGAAACGGAGGG 59.324 50.000 0.00 0.00 0.00 4.30
3118 3214 3.332034 ACGAGTAATTTGGAAACGGAGG 58.668 45.455 0.00 0.00 0.00 4.30
3119 3215 3.060363 CGACGAGTAATTTGGAAACGGAG 59.940 47.826 0.00 0.00 0.00 4.63
3120 3216 2.988493 CGACGAGTAATTTGGAAACGGA 59.012 45.455 0.00 0.00 0.00 4.69
3121 3217 2.473376 GCGACGAGTAATTTGGAAACGG 60.473 50.000 0.00 0.00 0.00 4.44
3122 3218 2.156117 TGCGACGAGTAATTTGGAAACG 59.844 45.455 0.00 0.00 0.00 3.60
3123 3219 3.430895 TCTGCGACGAGTAATTTGGAAAC 59.569 43.478 0.00 0.00 0.00 2.78
3124 3220 3.655486 TCTGCGACGAGTAATTTGGAAA 58.345 40.909 0.00 0.00 0.00 3.13
3125 3221 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
3126 3222 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
3127 3223 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
3128 3224 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
3129 3225 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
3130 3226 3.857052 TCCATTTCTGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
3131 3227 3.520290 TCCATTTCTGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
3132 3228 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
3133 3229 2.165641 ACATCCATTTCTGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
3134 3230 1.066858 ACATCCATTTCTGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
3135 3231 1.645034 ACATCCATTTCTGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
3136 3232 2.951457 TACATCCATTTCTGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
3137 3233 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
3138 3234 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
3139 3235 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
3140 3236 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
3168 3264 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
3169 3265 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
3170 3266 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
3171 3267 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
3172 3268 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
3173 3269 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
3174 3270 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
3175 3271 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
3176 3272 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
3177 3273 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
3178 3274 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
3179 3275 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
3180 3276 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
3181 3277 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
3182 3278 6.183360 CCAAATTACTTGTCGCAAGTATGGAT 60.183 38.462 26.28 18.05 34.60 3.41
3183 3279 5.123186 CCAAATTACTTGTCGCAAGTATGGA 59.877 40.000 26.28 17.13 34.60 3.41
3184 3280 5.123186 TCCAAATTACTTGTCGCAAGTATGG 59.877 40.000 25.46 25.46 34.26 2.74
3185 3281 6.176975 TCCAAATTACTTGTCGCAAGTATG 57.823 37.500 23.59 19.73 33.27 2.39
3186 3282 6.608610 GTTCCAAATTACTTGTCGCAAGTAT 58.391 36.000 23.59 13.19 33.27 2.12
3187 3283 5.333492 CGTTCCAAATTACTTGTCGCAAGTA 60.333 40.000 20.95 20.95 32.65 2.24
3188 3284 4.553938 CGTTCCAAATTACTTGTCGCAAGT 60.554 41.667 22.53 22.53 32.65 3.16
3189 3285 3.906008 CGTTCCAAATTACTTGTCGCAAG 59.094 43.478 15.16 15.16 32.65 4.01
3190 3286 3.304123 CCGTTCCAAATTACTTGTCGCAA 60.304 43.478 0.00 0.00 32.65 4.85
3191 3287 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
3192 3288 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
3193 3289 3.991773 TCTCCGTTCCAAATTACTTGTCG 59.008 43.478 0.00 0.00 32.65 4.35
3194 3290 5.934935 TTCTCCGTTCCAAATTACTTGTC 57.065 39.130 0.00 0.00 32.65 3.18
3195 3291 5.826208 ACTTTCTCCGTTCCAAATTACTTGT 59.174 36.000 0.00 0.00 32.65 3.16
3196 3292 6.313744 ACTTTCTCCGTTCCAAATTACTTG 57.686 37.500 0.00 0.00 34.52 3.16
3197 3293 6.429078 GGTACTTTCTCCGTTCCAAATTACTT 59.571 38.462 0.00 0.00 0.00 2.24
3198 3294 5.936372 GGTACTTTCTCCGTTCCAAATTACT 59.064 40.000 0.00 0.00 0.00 2.24
3199 3295 5.702209 TGGTACTTTCTCCGTTCCAAATTAC 59.298 40.000 0.00 0.00 30.28 1.89
3200 3296 5.702209 GTGGTACTTTCTCCGTTCCAAATTA 59.298 40.000 0.00 0.00 34.30 1.40
3201 3297 4.517832 GTGGTACTTTCTCCGTTCCAAATT 59.482 41.667 0.00 0.00 34.30 1.82
3202 3298 4.070009 GTGGTACTTTCTCCGTTCCAAAT 58.930 43.478 0.00 0.00 34.30 2.32
3203 3299 3.118334 TGTGGTACTTTCTCCGTTCCAAA 60.118 43.478 0.00 0.00 34.30 3.28
3204 3300 2.435069 TGTGGTACTTTCTCCGTTCCAA 59.565 45.455 0.00 0.00 34.30 3.53
3205 3301 2.040939 TGTGGTACTTTCTCCGTTCCA 58.959 47.619 0.00 0.00 30.66 3.53
3206 3302 2.825861 TGTGGTACTTTCTCCGTTCC 57.174 50.000 0.00 0.00 0.00 3.62
3207 3303 4.329256 GCTTATGTGGTACTTTCTCCGTTC 59.671 45.833 0.00 0.00 0.00 3.95
3208 3304 4.251268 GCTTATGTGGTACTTTCTCCGTT 58.749 43.478 0.00 0.00 0.00 4.44
3209 3305 3.259876 TGCTTATGTGGTACTTTCTCCGT 59.740 43.478 0.00 0.00 0.00 4.69
3210 3306 3.857052 TGCTTATGTGGTACTTTCTCCG 58.143 45.455 0.00 0.00 0.00 4.63
3211 3307 6.569179 TTTTGCTTATGTGGTACTTTCTCC 57.431 37.500 0.00 0.00 0.00 3.71
3234 3330 6.646240 AGTGACATAGCGCATTTCAAATTTTT 59.354 30.769 11.47 0.00 0.00 1.94
3235 3331 6.158598 AGTGACATAGCGCATTTCAAATTTT 58.841 32.000 11.47 0.00 0.00 1.82
3236 3332 5.713025 AGTGACATAGCGCATTTCAAATTT 58.287 33.333 11.47 0.00 0.00 1.82
3237 3333 5.314923 AGTGACATAGCGCATTTCAAATT 57.685 34.783 11.47 0.00 0.00 1.82
3238 3334 4.970662 AGTGACATAGCGCATTTCAAAT 57.029 36.364 11.47 0.41 0.00 2.32
3239 3335 5.411361 AGTTAGTGACATAGCGCATTTCAAA 59.589 36.000 11.47 0.28 0.00 2.69
3240 3336 4.935205 AGTTAGTGACATAGCGCATTTCAA 59.065 37.500 11.47 0.00 0.00 2.69
3241 3337 4.503910 AGTTAGTGACATAGCGCATTTCA 58.496 39.130 11.47 7.35 0.00 2.69
3242 3338 6.255887 ACTTAGTTAGTGACATAGCGCATTTC 59.744 38.462 11.47 4.64 35.19 2.17
3243 3339 6.106673 ACTTAGTTAGTGACATAGCGCATTT 58.893 36.000 11.47 0.00 35.19 2.32
3244 3340 5.661458 ACTTAGTTAGTGACATAGCGCATT 58.339 37.500 11.47 0.00 35.19 3.56
3245 3341 5.263968 ACTTAGTTAGTGACATAGCGCAT 57.736 39.130 11.47 0.00 35.19 4.73
3246 3342 4.713824 ACTTAGTTAGTGACATAGCGCA 57.286 40.909 11.47 0.00 35.19 6.09
3247 3343 6.264088 AGTAACTTAGTTAGTGACATAGCGC 58.736 40.000 11.25 0.00 40.31 5.92
3248 3344 8.684973 AAAGTAACTTAGTTAGTGACATAGCG 57.315 34.615 12.58 0.00 40.31 4.26
3249 3345 9.635520 TGAAAGTAACTTAGTTAGTGACATAGC 57.364 33.333 12.58 0.00 40.31 2.97
3260 3356 9.857957 GCTAGTCATAGTGAAAGTAACTTAGTT 57.142 33.333 2.32 2.32 0.00 2.24
3261 3357 8.468399 GGCTAGTCATAGTGAAAGTAACTTAGT 58.532 37.037 0.00 0.00 0.00 2.24
3262 3358 8.688151 AGGCTAGTCATAGTGAAAGTAACTTAG 58.312 37.037 0.00 0.00 0.00 2.18
3263 3359 8.591114 AGGCTAGTCATAGTGAAAGTAACTTA 57.409 34.615 0.00 0.00 0.00 2.24
3264 3360 7.483580 AGGCTAGTCATAGTGAAAGTAACTT 57.516 36.000 0.00 0.00 0.00 2.66
3265 3361 8.591114 TTAGGCTAGTCATAGTGAAAGTAACT 57.409 34.615 0.00 0.00 0.00 2.24
3266 3362 7.435784 GCTTAGGCTAGTCATAGTGAAAGTAAC 59.564 40.741 0.00 0.00 35.22 2.50
3267 3363 7.490000 GCTTAGGCTAGTCATAGTGAAAGTAA 58.510 38.462 0.00 0.00 35.22 2.24
3268 3364 7.040473 GCTTAGGCTAGTCATAGTGAAAGTA 57.960 40.000 0.00 0.00 35.22 2.24
3269 3365 5.908341 GCTTAGGCTAGTCATAGTGAAAGT 58.092 41.667 0.00 0.00 35.22 2.66
3285 3381 2.547299 AGAGATGCATCAGCTTAGGC 57.453 50.000 27.81 0.00 42.74 3.93
3286 3382 3.058450 CGAAGAGATGCATCAGCTTAGG 58.942 50.000 27.81 18.93 42.74 2.69
3287 3383 3.715495 ACGAAGAGATGCATCAGCTTAG 58.285 45.455 27.81 26.65 42.74 2.18
3375 3683 7.571025 TGGGTGGGATCTCTAATTAAAGTTAC 58.429 38.462 0.00 0.00 0.00 2.50
3402 3714 5.474876 ACGAAGAAAGGCAAAATGAAGATCT 59.525 36.000 0.00 0.00 0.00 2.75
3410 3722 4.646572 AGAGAGACGAAGAAAGGCAAAAT 58.353 39.130 0.00 0.00 0.00 1.82
3421 3733 2.898705 CCCATCCAAAGAGAGACGAAG 58.101 52.381 0.00 0.00 0.00 3.79
3425 3737 2.797177 AAGCCCATCCAAAGAGAGAC 57.203 50.000 0.00 0.00 0.00 3.36
3430 3742 0.258774 GCCCTAAGCCCATCCAAAGA 59.741 55.000 0.00 0.00 34.35 2.52
3448 3760 0.179129 CGGGTTGCCATTGAAGATGC 60.179 55.000 0.00 0.00 0.00 3.91
3468 3780 4.081309 TGGACAAATACGGGAGGACTTTAG 60.081 45.833 0.00 0.00 0.00 1.85
3469 3781 3.839490 TGGACAAATACGGGAGGACTTTA 59.161 43.478 0.00 0.00 0.00 1.85
3473 3785 2.561569 CATGGACAAATACGGGAGGAC 58.438 52.381 0.00 0.00 0.00 3.85
3489 3801 2.761786 ATTGATCCCCTTGTCCATGG 57.238 50.000 4.97 4.97 0.00 3.66
3494 3806 0.657840 CGCGAATTGATCCCCTTGTC 59.342 55.000 0.00 0.00 0.00 3.18
3496 3808 1.064060 GTTCGCGAATTGATCCCCTTG 59.936 52.381 26.23 0.00 0.00 3.61
3498 3810 0.251916 TGTTCGCGAATTGATCCCCT 59.748 50.000 26.23 0.00 0.00 4.79
3503 3816 2.287188 GCATCCATGTTCGCGAATTGAT 60.287 45.455 26.23 19.38 0.00 2.57
3508 3821 1.368345 CCTGCATCCATGTTCGCGAA 61.368 55.000 19.38 19.38 0.00 4.70
3509 3822 1.815003 CCTGCATCCATGTTCGCGA 60.815 57.895 3.71 3.71 0.00 5.87
3511 3824 1.442526 CCTCCTGCATCCATGTTCGC 61.443 60.000 0.00 0.00 0.00 4.70
3514 3827 0.107508 CGTCCTCCTGCATCCATGTT 60.108 55.000 0.00 0.00 0.00 2.71
3518 3831 3.785859 GGCGTCCTCCTGCATCCA 61.786 66.667 0.00 0.00 0.00 3.41
3524 3837 1.372087 GCTTGAATGGCGTCCTCCTG 61.372 60.000 0.00 0.00 0.00 3.86
3538 3851 6.262193 TCGGATATATGATGTTACGCTTGA 57.738 37.500 0.00 0.00 0.00 3.02
3542 3855 7.757097 AAAGATCGGATATATGATGTTACGC 57.243 36.000 0.00 0.00 29.08 4.42
3568 3881 4.638421 ACTTGATCGTGTGGACTTGAAAAA 59.362 37.500 0.00 0.00 0.00 1.94
3569 3882 4.196193 ACTTGATCGTGTGGACTTGAAAA 58.804 39.130 0.00 0.00 0.00 2.29
3570 3883 3.804036 ACTTGATCGTGTGGACTTGAAA 58.196 40.909 0.00 0.00 0.00 2.69
3571 3884 3.469008 ACTTGATCGTGTGGACTTGAA 57.531 42.857 0.00 0.00 0.00 2.69
3572 3885 3.614150 GCTACTTGATCGTGTGGACTTGA 60.614 47.826 5.66 0.00 0.00 3.02
3573 3886 2.668457 GCTACTTGATCGTGTGGACTTG 59.332 50.000 5.66 0.00 0.00 3.16
3574 3887 2.353803 GGCTACTTGATCGTGTGGACTT 60.354 50.000 5.66 0.00 0.00 3.01
3575 3888 1.204941 GGCTACTTGATCGTGTGGACT 59.795 52.381 5.66 0.00 0.00 3.85
3576 3889 1.641577 GGCTACTTGATCGTGTGGAC 58.358 55.000 5.66 0.00 0.00 4.02
3577 3890 0.172578 CGGCTACTTGATCGTGTGGA 59.827 55.000 5.66 0.00 0.00 4.02
3578 3891 1.421410 GCGGCTACTTGATCGTGTGG 61.421 60.000 0.00 0.00 0.00 4.17
3579 3892 0.735978 TGCGGCTACTTGATCGTGTG 60.736 55.000 0.00 0.00 0.00 3.82
3580 3893 0.175760 ATGCGGCTACTTGATCGTGT 59.824 50.000 0.00 0.00 0.00 4.49
3581 3894 0.578683 CATGCGGCTACTTGATCGTG 59.421 55.000 0.00 0.00 0.00 4.35
3582 3895 1.154205 GCATGCGGCTACTTGATCGT 61.154 55.000 0.00 0.00 40.25 3.73
3583 3896 1.153597 TGCATGCGGCTACTTGATCG 61.154 55.000 14.09 0.00 45.15 3.69
3584 3897 1.016627 TTGCATGCGGCTACTTGATC 58.983 50.000 14.09 0.00 45.15 2.92
3585 3898 1.402968 CTTTGCATGCGGCTACTTGAT 59.597 47.619 14.09 0.00 45.15 2.57
3586 3899 0.804364 CTTTGCATGCGGCTACTTGA 59.196 50.000 14.09 0.00 45.15 3.02
3587 3900 0.179156 CCTTTGCATGCGGCTACTTG 60.179 55.000 14.09 0.00 45.15 3.16
3588 3901 1.315257 CCCTTTGCATGCGGCTACTT 61.315 55.000 14.09 0.00 45.15 2.24
3589 3902 1.750399 CCCTTTGCATGCGGCTACT 60.750 57.895 14.09 0.00 45.15 2.57
3590 3903 0.746563 TACCCTTTGCATGCGGCTAC 60.747 55.000 14.09 0.00 45.15 3.58
3591 3904 0.746563 GTACCCTTTGCATGCGGCTA 60.747 55.000 14.09 0.00 45.15 3.93
3592 3905 2.046285 GTACCCTTTGCATGCGGCT 61.046 57.895 14.09 0.00 45.15 5.52
3593 3906 2.489751 GTACCCTTTGCATGCGGC 59.510 61.111 14.09 0.00 45.13 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.