Multiple sequence alignment - TraesCS5D01G512600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G512600 chr5D 100.000 5020 0 0 1 5020 536788109 536793128 0.000000e+00 9271.0
1 TraesCS5D01G512600 chr5D 93.204 721 39 7 1 713 314727125 314727843 0.000000e+00 1051.0
2 TraesCS5D01G512600 chr5D 92.827 711 42 7 1 704 155666138 155666846 0.000000e+00 1022.0
3 TraesCS5D01G512600 chr5D 79.276 497 86 10 2654 3141 536875044 536875532 1.040000e-86 331.0
4 TraesCS5D01G512600 chr5D 86.695 233 25 4 4700 4930 536805172 536805400 2.320000e-63 254.0
5 TraesCS5D01G512600 chr5D 91.262 103 9 0 4089 4191 536804779 536804881 1.880000e-29 141.0
6 TraesCS5D01G512600 chr5D 96.104 77 2 1 4307 4383 536792377 536792452 1.900000e-24 124.0
7 TraesCS5D01G512600 chr5D 96.104 77 2 1 4269 4344 536792415 536792491 1.900000e-24 124.0
8 TraesCS5D01G512600 chr5D 97.436 39 0 1 4345 4383 536792377 536792414 1.170000e-06 65.8
9 TraesCS5D01G512600 chr5D 97.436 39 0 1 4269 4306 536792453 536792491 1.170000e-06 65.8
10 TraesCS5D01G512600 chr5B 93.032 1263 73 7 870 2125 677668201 677666947 0.000000e+00 1831.0
11 TraesCS5D01G512600 chr5B 93.216 1135 36 8 2370 3494 677666954 677665851 0.000000e+00 1631.0
12 TraesCS5D01G512600 chr5B 94.875 722 32 3 3519 4236 677665773 677665053 0.000000e+00 1123.0
13 TraesCS5D01G512600 chr5B 90.051 392 19 5 4631 5020 677664567 677664194 1.620000e-134 490.0
14 TraesCS5D01G512600 chr4A 91.806 1257 40 25 2250 3497 634396986 634395784 0.000000e+00 1692.0
15 TraesCS5D01G512600 chr4A 93.744 1055 57 4 1194 2248 634398212 634397167 0.000000e+00 1574.0
16 TraesCS5D01G512600 chr4A 95.151 598 23 2 3519 4116 634393995 634393404 0.000000e+00 939.0
17 TraesCS5D01G512600 chr4A 90.196 510 26 7 4445 4933 634390953 634390447 1.180000e-180 643.0
18 TraesCS5D01G512600 chr4A 85.261 441 30 16 703 1130 634398964 634398546 6.010000e-114 422.0
19 TraesCS5D01G512600 chr4A 84.364 275 41 2 3918 4191 634306287 634306014 8.280000e-68 268.0
20 TraesCS5D01G512600 chr4A 84.058 276 40 4 3918 4191 634323980 634323707 3.850000e-66 263.0
21 TraesCS5D01G512600 chr4A 83.273 275 44 2 3918 4191 634287235 634286962 8.340000e-63 252.0
22 TraesCS5D01G512600 chr4A 85.430 151 15 3 4785 4932 634305115 634304969 3.130000e-32 150.0
23 TraesCS5D01G512600 chr4A 84.768 151 16 3 4785 4932 634286063 634285917 1.460000e-30 145.0
24 TraesCS5D01G512600 chr4A 79.079 239 26 10 3201 3430 631669956 631669733 5.240000e-30 143.0
25 TraesCS5D01G512600 chr4A 84.459 148 17 3 4785 4930 634267219 634267076 1.880000e-29 141.0
26 TraesCS5D01G512600 chr4A 84.106 151 17 3 4785 4932 634322810 634322664 6.780000e-29 139.0
27 TraesCS5D01G512600 chr4A 92.632 95 3 1 4930 5020 634370370 634370276 3.150000e-27 134.0
28 TraesCS5D01G512600 chr4A 91.781 73 6 0 4180 4252 634393367 634393295 8.890000e-18 102.0
29 TraesCS5D01G512600 chr4A 98.214 56 1 0 4248 4303 634393227 634393172 1.150000e-16 99.0
30 TraesCS5D01G512600 chr4A 100.000 36 0 0 4345 4380 634393206 634393171 3.240000e-07 67.6
31 TraesCS5D01G512600 chr4A 100.000 29 0 0 4952 4980 634267041 634267013 3.000000e-03 54.7
32 TraesCS5D01G512600 chr3D 93.803 710 36 4 1 704 184613697 184612990 0.000000e+00 1061.0
33 TraesCS5D01G512600 chr3D 93.352 707 38 5 4 704 184606820 184606117 0.000000e+00 1037.0
34 TraesCS5D01G512600 chr3D 93.050 705 38 6 1 704 313789282 313788588 0.000000e+00 1020.0
35 TraesCS5D01G512600 chr2A 93.512 709 38 6 1 704 755856643 755855938 0.000000e+00 1048.0
36 TraesCS5D01G512600 chr3B 92.948 709 34 9 1 704 782000661 782001358 0.000000e+00 1018.0
37 TraesCS5D01G512600 chr2D 92.826 697 42 5 1 694 131560326 131561017 0.000000e+00 1003.0
38 TraesCS5D01G512600 chr3A 92.243 709 50 4 4 710 750475542 750474837 0.000000e+00 1000.0
39 TraesCS5D01G512600 chr4B 82.881 590 90 9 2885 3471 11575078 11575659 2.070000e-143 520.0
40 TraesCS5D01G512600 chrUn 83.455 550 82 7 2924 3471 37900646 37901188 2.090000e-138 503.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G512600 chr5D 536788109 536793128 5019 False 1930.120 9271 97.416000 1 5020 5 chr5D.!!$F4 5019
1 TraesCS5D01G512600 chr5D 314727125 314727843 718 False 1051.000 1051 93.204000 1 713 1 chr5D.!!$F2 712
2 TraesCS5D01G512600 chr5D 155666138 155666846 708 False 1022.000 1022 92.827000 1 704 1 chr5D.!!$F1 703
3 TraesCS5D01G512600 chr5B 677664194 677668201 4007 True 1268.750 1831 92.793500 870 5020 4 chr5B.!!$R1 4150
4 TraesCS5D01G512600 chr4A 634390447 634398964 8517 True 692.325 1692 93.269125 703 4933 8 chr4A.!!$R7 4230
5 TraesCS5D01G512600 chr4A 634304969 634306287 1318 True 209.000 268 84.897000 3918 4932 2 chr4A.!!$R5 1014
6 TraesCS5D01G512600 chr4A 634322664 634323980 1316 True 201.000 263 84.082000 3918 4932 2 chr4A.!!$R6 1014
7 TraesCS5D01G512600 chr3D 184612990 184613697 707 True 1061.000 1061 93.803000 1 704 1 chr3D.!!$R2 703
8 TraesCS5D01G512600 chr3D 184606117 184606820 703 True 1037.000 1037 93.352000 4 704 1 chr3D.!!$R1 700
9 TraesCS5D01G512600 chr3D 313788588 313789282 694 True 1020.000 1020 93.050000 1 704 1 chr3D.!!$R3 703
10 TraesCS5D01G512600 chr2A 755855938 755856643 705 True 1048.000 1048 93.512000 1 704 1 chr2A.!!$R1 703
11 TraesCS5D01G512600 chr3B 782000661 782001358 697 False 1018.000 1018 92.948000 1 704 1 chr3B.!!$F1 703
12 TraesCS5D01G512600 chr2D 131560326 131561017 691 False 1003.000 1003 92.826000 1 694 1 chr2D.!!$F1 693
13 TraesCS5D01G512600 chr3A 750474837 750475542 705 True 1000.000 1000 92.243000 4 710 1 chr3A.!!$R1 706
14 TraesCS5D01G512600 chr4B 11575078 11575659 581 False 520.000 520 82.881000 2885 3471 1 chr4B.!!$F1 586
15 TraesCS5D01G512600 chrUn 37900646 37901188 542 False 503.000 503 83.455000 2924 3471 1 chrUn.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 588 0.601558 GCTCACTAGGGACACGTTGA 59.398 55.0 0.00 0.0 0.00 3.18 F
1833 2144 0.681175 AGACATTTGGTTTGCTGCCC 59.319 50.0 0.00 0.0 0.00 5.36 F
1856 2167 0.106819 GGAGGTGCTGAGGATGCAAT 60.107 55.0 0.00 0.0 42.41 3.56 F
3013 3510 0.957395 AAGGCCACGACAAGCATCAG 60.957 55.0 5.01 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2150 0.622136 TCATTGCATCCTCAGCACCT 59.378 50.000 0.00 0.0 42.54 4.00 R
3264 3765 1.776662 TCCTCCACAATCCCTAGTCG 58.223 55.000 0.00 0.0 0.00 4.18 R
3494 3995 3.185797 AGTTAAAACTTTCGCTAGCCACG 59.814 43.478 9.66 0.0 35.21 4.94 R
4401 7167 0.958382 GCTCCACGCCATACACCAAA 60.958 55.000 0.00 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 2.205074 GCATGATCCCGTGACTAACTG 58.795 52.381 0.00 0.00 0.00 3.16
165 166 2.799017 TCCCGTGACTAACTGCTTAGA 58.201 47.619 0.07 0.00 34.46 2.10
185 186 7.518052 GCTTAGACACATTGAGCTCATTATGAC 60.518 40.741 27.45 19.00 0.00 3.06
228 229 2.026169 AGAGATACCTCTCCGTCACACA 60.026 50.000 0.00 0.00 46.38 3.72
267 272 1.584495 GATTCGTGCCAACCCAACC 59.416 57.895 0.00 0.00 0.00 3.77
476 486 4.946157 GGTCTTGTCCATCACATCATTCTT 59.054 41.667 0.00 0.00 33.90 2.52
497 513 8.613060 TTCTTCTAATGATGTGATCCTAATGC 57.387 34.615 0.00 0.00 0.00 3.56
505 523 2.244510 TGTGATCCTAATGCCCATGGTT 59.755 45.455 11.73 0.66 0.00 3.67
530 548 6.659824 AGGAAACCGTAACCATCTATTGATT 58.340 36.000 0.00 0.00 0.00 2.57
570 588 0.601558 GCTCACTAGGGACACGTTGA 59.398 55.000 0.00 0.00 0.00 3.18
582 600 4.499357 GGGACACGTTGAGGTCTATGTATC 60.499 50.000 4.05 0.00 34.49 2.24
596 614 9.326489 AGGTCTATGTATCCACACATGTATTAT 57.674 33.333 0.00 0.00 39.46 1.28
742 760 2.016318 TCAGCAATAAACGAGGCATGG 58.984 47.619 0.00 0.00 0.00 3.66
767 786 4.287067 CCATGGCAGTAAGATACCCATAGT 59.713 45.833 0.00 0.00 34.68 2.12
781 800 1.625228 CCATAGTGGGGGTTCCTCTGA 60.625 57.143 0.00 0.00 39.49 3.27
787 806 4.844348 AGTGGGGGTTCCTCTGAATATAT 58.156 43.478 0.00 0.00 37.91 0.86
793 812 6.327887 GGGGGTTCCTCTGAATATATCTATCC 59.672 46.154 0.00 0.00 31.98 2.59
810 829 9.845214 ATATCTATCCCTCCTAGCTAAAGAAAA 57.155 33.333 0.00 0.00 0.00 2.29
811 830 7.989947 TCTATCCCTCCTAGCTAAAGAAAAA 57.010 36.000 0.00 0.00 0.00 1.94
812 831 8.024145 TCTATCCCTCCTAGCTAAAGAAAAAG 57.976 38.462 0.00 0.00 0.00 2.27
813 832 6.644308 ATCCCTCCTAGCTAAAGAAAAAGT 57.356 37.500 0.00 0.00 0.00 2.66
814 833 5.805728 TCCCTCCTAGCTAAAGAAAAAGTG 58.194 41.667 0.00 0.00 0.00 3.16
815 834 5.546499 TCCCTCCTAGCTAAAGAAAAAGTGA 59.454 40.000 0.00 0.00 0.00 3.41
816 835 6.043938 TCCCTCCTAGCTAAAGAAAAAGTGAA 59.956 38.462 0.00 0.00 0.00 3.18
817 836 6.372937 CCCTCCTAGCTAAAGAAAAAGTGAAG 59.627 42.308 0.00 0.00 0.00 3.02
818 837 6.372937 CCTCCTAGCTAAAGAAAAAGTGAAGG 59.627 42.308 0.00 0.00 0.00 3.46
819 838 7.074653 TCCTAGCTAAAGAAAAAGTGAAGGA 57.925 36.000 0.00 0.00 0.00 3.36
820 839 7.514721 TCCTAGCTAAAGAAAAAGTGAAGGAA 58.485 34.615 0.00 0.00 0.00 3.36
821 840 7.661847 TCCTAGCTAAAGAAAAAGTGAAGGAAG 59.338 37.037 0.00 0.00 0.00 3.46
822 841 6.641169 AGCTAAAGAAAAAGTGAAGGAAGG 57.359 37.500 0.00 0.00 0.00 3.46
823 842 6.365520 AGCTAAAGAAAAAGTGAAGGAAGGA 58.634 36.000 0.00 0.00 0.00 3.36
824 843 6.488344 AGCTAAAGAAAAAGTGAAGGAAGGAG 59.512 38.462 0.00 0.00 0.00 3.69
825 844 6.294231 GCTAAAGAAAAAGTGAAGGAAGGAGG 60.294 42.308 0.00 0.00 0.00 4.30
826 845 4.105754 AGAAAAAGTGAAGGAAGGAGGG 57.894 45.455 0.00 0.00 0.00 4.30
827 846 3.722101 AGAAAAAGTGAAGGAAGGAGGGA 59.278 43.478 0.00 0.00 0.00 4.20
828 847 3.797559 AAAAGTGAAGGAAGGAGGGAG 57.202 47.619 0.00 0.00 0.00 4.30
829 848 1.662686 AAGTGAAGGAAGGAGGGAGG 58.337 55.000 0.00 0.00 0.00 4.30
830 849 0.793617 AGTGAAGGAAGGAGGGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
831 850 1.152271 AGTGAAGGAAGGAGGGAGGAA 59.848 52.381 0.00 0.00 0.00 3.36
832 851 1.557371 GTGAAGGAAGGAGGGAGGAAG 59.443 57.143 0.00 0.00 0.00 3.46
833 852 1.208706 GAAGGAAGGAGGGAGGAAGG 58.791 60.000 0.00 0.00 0.00 3.46
872 891 1.241315 AAGCCCAAAATCCGTCCACG 61.241 55.000 0.00 0.00 39.44 4.94
873 892 2.874751 CCCAAAATCCGTCCACGC 59.125 61.111 0.00 0.00 38.18 5.34
924 954 4.063967 ACGCGTGCCGATCCTTCA 62.064 61.111 12.93 0.00 41.02 3.02
927 957 3.257561 CGTGCCGATCCTTCAGCG 61.258 66.667 0.00 0.00 0.00 5.18
966 998 2.026822 TCTCAGCAGGTTGGATTTCTCC 60.027 50.000 0.00 0.00 42.45 3.71
1089 1130 3.551496 CTGGCTCCCCAACAAGCGA 62.551 63.158 0.00 0.00 41.58 4.93
1109 1150 2.676121 CCACTGCGCCAATTCCCA 60.676 61.111 4.18 0.00 0.00 4.37
1110 1151 2.568090 CACTGCGCCAATTCCCAC 59.432 61.111 4.18 0.00 0.00 4.61
1130 1171 3.772025 CACCTCTCATCTTCCCAGTAAGT 59.228 47.826 0.00 0.00 0.00 2.24
1190 1232 1.152118 TCACCACCACCCTACTGCT 60.152 57.895 0.00 0.00 0.00 4.24
1281 1592 1.616628 CTCCCAGTAAGCCCCCTGT 60.617 63.158 0.00 0.00 0.00 4.00
1324 1635 1.115467 CGCCACCACTCTTCTCCTAT 58.885 55.000 0.00 0.00 0.00 2.57
1571 1882 3.792053 GAAGATCCGGTCGGCGCAT 62.792 63.158 10.83 0.00 34.68 4.73
1572 1883 2.416244 GAAGATCCGGTCGGCGCATA 62.416 60.000 10.83 0.00 34.68 3.14
1616 1927 2.200370 TCCTACATCGCCCCGGAT 59.800 61.111 0.73 0.00 0.00 4.18
1698 2009 3.194542 TGAGGGGGTTGCGATAATTTTTG 59.805 43.478 0.00 0.00 0.00 2.44
1699 2010 3.169908 AGGGGGTTGCGATAATTTTTGT 58.830 40.909 0.00 0.00 0.00 2.83
1700 2011 4.345854 AGGGGGTTGCGATAATTTTTGTA 58.654 39.130 0.00 0.00 0.00 2.41
1703 2014 5.099575 GGGGTTGCGATAATTTTTGTAGTG 58.900 41.667 0.00 0.00 0.00 2.74
1704 2015 4.561213 GGGTTGCGATAATTTTTGTAGTGC 59.439 41.667 0.00 0.00 0.00 4.40
1743 2054 4.702131 ACTTCAGGAGTGATTTATGTTGGC 59.298 41.667 0.00 0.00 37.17 4.52
1833 2144 0.681175 AGACATTTGGTTTGCTGCCC 59.319 50.000 0.00 0.00 0.00 5.36
1839 2150 4.299796 GGTTTGCTGCCCAGGGGA 62.300 66.667 7.91 2.57 37.50 4.81
1856 2167 0.106819 GGAGGTGCTGAGGATGCAAT 60.107 55.000 0.00 0.00 42.41 3.56
1866 2177 4.504514 GCTGAGGATGCAATGAAGGAGATA 60.505 45.833 0.00 0.00 0.00 1.98
1869 2180 3.393609 AGGATGCAATGAAGGAGATAGCA 59.606 43.478 0.00 0.00 34.78 3.49
1870 2181 3.752222 GGATGCAATGAAGGAGATAGCAG 59.248 47.826 0.00 0.00 33.69 4.24
1877 2188 4.727507 TGAAGGAGATAGCAGTGAAGAC 57.272 45.455 0.00 0.00 0.00 3.01
2111 2422 6.398935 GCTGAATGCAACTTAATTTTCGTGTC 60.399 38.462 0.00 0.00 42.31 3.67
2112 2423 6.499172 TGAATGCAACTTAATTTTCGTGTCA 58.501 32.000 0.00 0.00 0.00 3.58
2123 2434 4.894798 TTTTCGTGTCAAACTTTGCAAC 57.105 36.364 0.00 0.00 0.00 4.17
2124 2435 2.553079 TCGTGTCAAACTTTGCAACC 57.447 45.000 0.00 0.00 0.00 3.77
2125 2436 1.813178 TCGTGTCAAACTTTGCAACCA 59.187 42.857 0.00 0.00 0.00 3.67
2126 2437 2.425312 TCGTGTCAAACTTTGCAACCAT 59.575 40.909 0.00 0.00 0.00 3.55
2127 2438 3.628032 TCGTGTCAAACTTTGCAACCATA 59.372 39.130 0.00 0.00 0.00 2.74
2128 2439 4.277174 TCGTGTCAAACTTTGCAACCATAT 59.723 37.500 0.00 0.00 0.00 1.78
2141 2452 8.627487 TTTGCAACCATATAGCTTATTTTTCG 57.373 30.769 0.00 0.00 0.00 3.46
2195 2506 4.630940 AGCGGATTTGCCATTGTTAATTTG 59.369 37.500 0.00 0.00 35.94 2.32
2200 2511 5.938438 TTTGCCATTGTTAATTTGAAGGC 57.062 34.783 0.00 0.00 41.15 4.35
2201 2512 3.583806 TGCCATTGTTAATTTGAAGGCG 58.416 40.909 0.00 0.00 43.59 5.52
2207 2518 4.576216 TGTTAATTTGAAGGCGCTCAAA 57.424 36.364 22.28 22.28 46.45 2.69
2226 2537 6.647334 TCAAAACTTGAATGTAATGGCTGA 57.353 33.333 0.00 0.00 36.59 4.26
2248 2559 5.121611 TGATCTTTTGTGCCATAGTTGTACG 59.878 40.000 0.00 0.00 0.00 3.67
2249 2560 4.633175 TCTTTTGTGCCATAGTTGTACGA 58.367 39.130 0.00 0.00 0.00 3.43
2250 2561 5.057819 TCTTTTGTGCCATAGTTGTACGAA 58.942 37.500 0.00 0.00 0.00 3.85
2251 2562 5.178623 TCTTTTGTGCCATAGTTGTACGAAG 59.821 40.000 0.00 0.00 0.00 3.79
2255 2566 2.563620 TGCCATAGTTGTACGAAGACCA 59.436 45.455 0.00 0.00 0.00 4.02
2361 2851 5.343307 AAAATTCTGGCAGTCAAACAACT 57.657 34.783 15.27 0.00 0.00 3.16
2362 2852 5.343307 AAATTCTGGCAGTCAAACAACTT 57.657 34.783 15.27 0.00 0.00 2.66
2363 2853 3.781079 TTCTGGCAGTCAAACAACTTG 57.219 42.857 15.27 0.00 36.25 3.16
2364 2854 2.722094 TCTGGCAGTCAAACAACTTGT 58.278 42.857 15.27 0.00 36.34 3.16
2365 2855 3.088532 TCTGGCAGTCAAACAACTTGTT 58.911 40.909 15.27 1.00 43.41 2.83
2366 2856 3.128589 TCTGGCAGTCAAACAACTTGTTC 59.871 43.478 15.27 0.00 40.14 3.18
2367 2857 3.088532 TGGCAGTCAAACAACTTGTTCT 58.911 40.909 7.62 0.00 40.14 3.01
2368 2858 3.119531 TGGCAGTCAAACAACTTGTTCTG 60.120 43.478 7.62 11.30 40.14 3.02
2369 2859 3.119495 GGCAGTCAAACAACTTGTTCTGT 60.119 43.478 17.02 0.00 40.14 3.41
2370 2860 4.485163 GCAGTCAAACAACTTGTTCTGTT 58.515 39.130 17.02 0.00 40.14 3.16
2371 2861 5.392595 GGCAGTCAAACAACTTGTTCTGTTA 60.393 40.000 17.02 0.00 40.14 2.41
2391 2881 5.771165 TGTTAAACCTAATTTCACCAGGACC 59.229 40.000 0.00 0.00 33.44 4.46
2431 2921 5.489792 TGAGCAACTCAGGATTAGTTCTT 57.510 39.130 0.00 0.00 35.39 2.52
2454 2944 4.365723 TCACTTCCTCGTTAACTGTTGTC 58.634 43.478 2.69 0.00 0.00 3.18
2455 2945 3.493503 CACTTCCTCGTTAACTGTTGTCC 59.506 47.826 2.69 0.00 0.00 4.02
2457 2947 3.380479 TCCTCGTTAACTGTTGTCCTG 57.620 47.619 2.69 0.00 0.00 3.86
2585 3082 1.589716 GCACAGTTGACAGGGGCATC 61.590 60.000 0.00 0.00 0.00 3.91
2592 3089 1.271840 TGACAGGGGCATCTGGGTAC 61.272 60.000 10.94 0.00 38.98 3.34
2625 3122 3.181500 CCTTTGGGCGCTCAGTATTTTAC 60.181 47.826 11.23 0.00 0.00 2.01
2626 3123 2.032680 TGGGCGCTCAGTATTTTACC 57.967 50.000 5.44 0.00 0.00 2.85
2627 3124 1.557832 TGGGCGCTCAGTATTTTACCT 59.442 47.619 5.44 0.00 0.00 3.08
2628 3125 1.940613 GGGCGCTCAGTATTTTACCTG 59.059 52.381 7.64 0.00 0.00 4.00
2629 3126 2.629051 GGCGCTCAGTATTTTACCTGT 58.371 47.619 7.64 0.00 0.00 4.00
2630 3127 2.351726 GGCGCTCAGTATTTTACCTGTG 59.648 50.000 7.64 0.00 0.00 3.66
2631 3128 2.223044 GCGCTCAGTATTTTACCTGTGC 60.223 50.000 0.00 0.00 34.31 4.57
2632 3129 3.000041 CGCTCAGTATTTTACCTGTGCA 59.000 45.455 12.38 0.00 36.49 4.57
2633 3130 3.623060 CGCTCAGTATTTTACCTGTGCAT 59.377 43.478 12.38 0.00 36.49 3.96
2634 3131 4.094887 CGCTCAGTATTTTACCTGTGCATT 59.905 41.667 12.38 0.00 36.49 3.56
2635 3132 5.391950 CGCTCAGTATTTTACCTGTGCATTT 60.392 40.000 12.38 0.00 36.49 2.32
2636 3133 5.801947 GCTCAGTATTTTACCTGTGCATTTG 59.198 40.000 8.36 0.00 36.64 2.32
2637 3134 5.708948 TCAGTATTTTACCTGTGCATTTGC 58.291 37.500 0.00 0.00 42.50 3.68
2638 3135 5.476599 TCAGTATTTTACCTGTGCATTTGCT 59.523 36.000 3.94 0.00 42.66 3.91
2639 3136 5.801947 CAGTATTTTACCTGTGCATTTGCTC 59.198 40.000 3.94 0.77 42.66 4.26
2640 3137 4.870123 ATTTTACCTGTGCATTTGCTCA 57.130 36.364 3.94 5.66 41.53 4.26
2641 3138 4.870123 TTTTACCTGTGCATTTGCTCAT 57.130 36.364 7.66 0.00 42.61 2.90
2642 3139 3.853831 TTACCTGTGCATTTGCTCATG 57.146 42.857 7.66 7.79 42.61 3.07
2643 3140 1.624336 ACCTGTGCATTTGCTCATGT 58.376 45.000 7.66 8.35 42.61 3.21
2644 3141 2.794103 ACCTGTGCATTTGCTCATGTA 58.206 42.857 11.92 0.00 42.61 2.29
2645 3142 3.359033 ACCTGTGCATTTGCTCATGTAT 58.641 40.909 11.92 0.00 42.61 2.29
2646 3143 3.765511 ACCTGTGCATTTGCTCATGTATT 59.234 39.130 11.92 0.00 42.61 1.89
2647 3144 4.221262 ACCTGTGCATTTGCTCATGTATTT 59.779 37.500 11.92 0.00 42.61 1.40
2648 3145 4.565166 CCTGTGCATTTGCTCATGTATTTG 59.435 41.667 7.66 0.00 42.61 2.32
2649 3146 3.927758 TGTGCATTTGCTCATGTATTTGC 59.072 39.130 3.94 0.00 39.29 3.68
2650 3147 3.927758 GTGCATTTGCTCATGTATTTGCA 59.072 39.130 3.94 0.00 42.66 4.08
2651 3148 4.569162 GTGCATTTGCTCATGTATTTGCAT 59.431 37.500 3.94 0.00 40.52 3.96
2692 3189 5.473162 TGTATTTGTGTGCTGAAGTTATGCT 59.527 36.000 2.03 0.00 0.00 3.79
2792 3289 1.594331 AAAGCGTTGAGTGGAAGTCC 58.406 50.000 0.00 0.00 34.62 3.85
2866 3363 6.656945 TGCATTTGTAAACAATGCAATGTTC 58.343 32.000 19.99 9.64 42.49 3.18
3013 3510 0.957395 AAGGCCACGACAAGCATCAG 60.957 55.000 5.01 0.00 0.00 2.90
3231 3728 9.630098 GTTTGAATTGCTTTGAAGAGAATCATA 57.370 29.630 0.00 0.00 37.82 2.15
3264 3765 4.764172 TGCAGATAAAGCTTTCCTCTCTC 58.236 43.478 16.57 12.44 0.00 3.20
3356 3857 1.280421 AGCTCCCATGACTCTTTGGAC 59.720 52.381 0.00 0.00 34.81 4.02
3366 3867 3.960755 TGACTCTTTGGACTCTGAAGACA 59.039 43.478 0.00 0.00 0.00 3.41
3411 3912 9.959749 GGTAAGAAATCATTAAACAAGTGTCAA 57.040 29.630 0.00 0.00 0.00 3.18
3494 3995 7.133133 TGTTAGGACCTTTATTATCACCCTC 57.867 40.000 0.00 0.00 0.00 4.30
3497 3998 4.101119 AGGACCTTTATTATCACCCTCGTG 59.899 45.833 0.00 0.00 41.72 4.35
3498 3999 4.377897 GACCTTTATTATCACCCTCGTGG 58.622 47.826 0.00 0.00 40.65 4.94
3499 4000 3.139077 CCTTTATTATCACCCTCGTGGC 58.861 50.000 0.00 0.00 40.65 5.01
3501 4002 4.039973 CCTTTATTATCACCCTCGTGGCTA 59.960 45.833 0.00 0.00 40.65 3.93
3502 4003 4.866508 TTATTATCACCCTCGTGGCTAG 57.133 45.455 0.00 0.00 40.65 3.42
3503 4004 0.750850 TTATCACCCTCGTGGCTAGC 59.249 55.000 6.04 6.04 40.65 3.42
3504 4005 1.452953 TATCACCCTCGTGGCTAGCG 61.453 60.000 9.00 0.00 40.65 4.26
3529 5797 8.618952 CGAAAGTTTTAACTCGTCATTCATTTC 58.381 33.333 0.00 0.00 38.57 2.17
3647 5915 9.802039 TCTTTAACACCCTTGTATTACATCTTT 57.198 29.630 0.00 0.00 33.55 2.52
3962 6240 2.359531 AGATGCAGACCTCGTAAGCTAC 59.640 50.000 0.00 0.00 37.18 3.58
4060 6339 2.656947 TCAACCCTGAGAAACTTGGG 57.343 50.000 0.00 0.00 44.89 4.12
4094 6373 6.856494 TGTAAAACGCTTTGTGTTTACAAG 57.144 33.333 9.22 0.00 46.63 3.16
4159 6438 4.016444 TGAGAAAAATACTGCCATGACCC 58.984 43.478 0.00 0.00 0.00 4.46
4253 6947 5.733226 TCATGTTTTACTCACACACACAG 57.267 39.130 0.00 0.00 0.00 3.66
4303 7069 8.318412 ACATATCACATGAAACTGTAGTACCAA 58.682 33.333 0.00 0.00 0.00 3.67
4308 7074 8.372459 TCACATGAAACTGTAGTACCAATAAGT 58.628 33.333 0.00 0.00 0.00 2.24
4309 7075 8.656849 CACATGAAACTGTAGTACCAATAAGTC 58.343 37.037 0.00 0.00 0.00 3.01
4311 7077 8.656849 CATGAAACTGTAGTACCAATAAGTCAC 58.343 37.037 0.00 0.00 0.00 3.67
4313 7079 7.654520 TGAAACTGTAGTACCAATAAGTCACAC 59.345 37.037 0.00 0.00 0.00 3.82
4314 7080 6.659745 ACTGTAGTACCAATAAGTCACACA 57.340 37.500 0.00 0.00 0.00 3.72
4315 7081 7.058023 ACTGTAGTACCAATAAGTCACACAA 57.942 36.000 0.00 0.00 0.00 3.33
4316 7082 6.927381 ACTGTAGTACCAATAAGTCACACAAC 59.073 38.462 0.00 0.00 0.00 3.32
4317 7083 6.818233 TGTAGTACCAATAAGTCACACAACA 58.182 36.000 0.00 0.00 0.00 3.33
4318 7084 7.446769 TGTAGTACCAATAAGTCACACAACAT 58.553 34.615 0.00 0.00 0.00 2.71
4321 7087 8.718102 AGTACCAATAAGTCACACAACATATC 57.282 34.615 0.00 0.00 0.00 1.63
4323 7089 7.377766 ACCAATAAGTCACACAACATATCAC 57.622 36.000 0.00 0.00 0.00 3.06
4324 7090 6.939730 ACCAATAAGTCACACAACATATCACA 59.060 34.615 0.00 0.00 0.00 3.58
4325 7091 7.094805 ACCAATAAGTCACACAACATATCACAC 60.095 37.037 0.00 0.00 0.00 3.82
4326 7092 4.990543 AAGTCACACAACATATCACACG 57.009 40.909 0.00 0.00 0.00 4.49
4327 7093 4.251543 AGTCACACAACATATCACACGA 57.748 40.909 0.00 0.00 0.00 4.35
4328 7094 4.627058 AGTCACACAACATATCACACGAA 58.373 39.130 0.00 0.00 0.00 3.85
4329 7095 5.053811 AGTCACACAACATATCACACGAAA 58.946 37.500 0.00 0.00 0.00 3.46
4330 7096 5.050363 AGTCACACAACATATCACACGAAAC 60.050 40.000 0.00 0.00 0.00 2.78
4331 7097 5.050363 GTCACACAACATATCACACGAAACT 60.050 40.000 0.00 0.00 0.00 2.66
4333 7099 4.814234 ACACAACATATCACACGAAACTGT 59.186 37.500 0.00 0.00 0.00 3.55
4334 7100 5.986741 ACACAACATATCACACGAAACTGTA 59.013 36.000 0.00 0.00 0.00 2.74
4335 7101 6.145534 ACACAACATATCACACGAAACTGTAG 59.854 38.462 0.00 0.00 0.00 2.74
4337 7103 7.327518 CACAACATATCACACGAAACTGTAGTA 59.672 37.037 0.00 0.00 0.00 1.82
4338 7104 7.327761 ACAACATATCACACGAAACTGTAGTAC 59.672 37.037 0.00 0.00 0.00 2.73
4339 7105 6.327934 ACATATCACACGAAACTGTAGTACC 58.672 40.000 0.00 0.00 0.00 3.34
4340 7106 4.859304 ATCACACGAAACTGTAGTACCA 57.141 40.909 0.00 0.00 0.00 3.25
4342 7108 5.204409 TCACACGAAACTGTAGTACCAAT 57.796 39.130 0.00 0.00 0.00 3.16
4345 7111 6.864685 TCACACGAAACTGTAGTACCAATAAG 59.135 38.462 0.00 0.00 0.00 1.73
4346 7112 6.643770 CACACGAAACTGTAGTACCAATAAGT 59.356 38.462 0.00 0.00 0.00 2.24
4347 7113 6.865205 ACACGAAACTGTAGTACCAATAAGTC 59.135 38.462 0.00 0.00 0.00 3.01
4348 7114 6.864685 CACGAAACTGTAGTACCAATAAGTCA 59.135 38.462 0.00 0.00 0.00 3.41
4352 7118 6.659745 ACTGTAGTACCAATAAGTCACACA 57.340 37.500 0.00 0.00 0.00 3.72
4353 7119 7.058023 ACTGTAGTACCAATAAGTCACACAA 57.942 36.000 0.00 0.00 0.00 3.33
4356 7122 7.446769 TGTAGTACCAATAAGTCACACAACAT 58.553 34.615 0.00 0.00 0.00 2.71
4357 7123 8.586744 TGTAGTACCAATAAGTCACACAACATA 58.413 33.333 0.00 0.00 0.00 2.29
4358 7124 9.595823 GTAGTACCAATAAGTCACACAACATAT 57.404 33.333 0.00 0.00 0.00 1.78
4360 7126 8.318412 AGTACCAATAAGTCACACAACATATCA 58.682 33.333 0.00 0.00 0.00 2.15
4361 7127 7.377766 ACCAATAAGTCACACAACATATCAC 57.622 36.000 0.00 0.00 0.00 3.06
4362 7128 6.939730 ACCAATAAGTCACACAACATATCACA 59.060 34.615 0.00 0.00 0.00 3.58
4363 7129 7.611467 ACCAATAAGTCACACAACATATCACAT 59.389 33.333 0.00 0.00 0.00 3.21
4365 7131 8.667463 CAATAAGTCACACAACATATCACATGA 58.333 33.333 0.00 0.00 0.00 3.07
4366 7132 8.791327 ATAAGTCACACAACATATCACATGAA 57.209 30.769 0.00 0.00 0.00 2.57
4367 7133 7.509141 AAGTCACACAACATATCACATGAAA 57.491 32.000 0.00 0.00 0.00 2.69
4368 7134 6.902341 AGTCACACAACATATCACATGAAAC 58.098 36.000 0.00 0.00 0.00 2.78
4370 7136 6.798476 GTCACACAACATATCACATGAAACTG 59.202 38.462 0.00 0.00 0.00 3.16
4372 7138 7.659390 TCACACAACATATCACATGAAACTGTA 59.341 33.333 0.00 0.00 0.00 2.74
4373 7139 7.959109 CACACAACATATCACATGAAACTGTAG 59.041 37.037 0.00 0.00 0.00 2.74
4374 7140 7.661437 ACACAACATATCACATGAAACTGTAGT 59.339 33.333 0.00 0.00 0.00 2.73
4375 7141 9.150348 CACAACATATCACATGAAACTGTAGTA 57.850 33.333 0.00 0.00 0.00 1.82
4377 7143 8.604035 CAACATATCACATGAAACTGTAGTACC 58.396 37.037 0.00 0.00 0.00 3.34
4378 7144 7.847096 ACATATCACATGAAACTGTAGTACCA 58.153 34.615 0.00 0.00 0.00 3.25
4379 7145 8.486210 ACATATCACATGAAACTGTAGTACCAT 58.514 33.333 0.00 0.00 0.00 3.55
4380 7146 9.981114 CATATCACATGAAACTGTAGTACCATA 57.019 33.333 0.00 0.00 0.00 2.74
4384 7150 9.981114 TCACATGAAACTGTAGTACCATATATG 57.019 33.333 5.68 5.68 0.00 1.78
4385 7151 9.764363 CACATGAAACTGTAGTACCATATATGT 57.236 33.333 11.73 3.03 0.00 2.29
4389 7155 9.594478 TGAAACTGTAGTACCATATATGTTGTG 57.406 33.333 11.73 0.00 0.00 3.33
4390 7156 9.595823 GAAACTGTAGTACCATATATGTTGTGT 57.404 33.333 11.73 5.00 0.00 3.72
4392 7158 8.301252 ACTGTAGTACCATATATGTTGTGTGA 57.699 34.615 11.73 0.00 0.00 3.58
4393 7159 8.195436 ACTGTAGTACCATATATGTTGTGTGAC 58.805 37.037 11.73 4.37 0.00 3.67
4394 7160 8.301252 TGTAGTACCATATATGTTGTGTGACT 57.699 34.615 11.73 6.61 0.00 3.41
4395 7161 8.410912 TGTAGTACCATATATGTTGTGTGACTC 58.589 37.037 11.73 1.41 0.00 3.36
4396 7162 7.418337 AGTACCATATATGTTGTGTGACTCA 57.582 36.000 11.73 0.00 0.00 3.41
4397 7163 7.492524 AGTACCATATATGTTGTGTGACTCAG 58.507 38.462 11.73 0.00 0.00 3.35
4398 7164 6.299805 ACCATATATGTTGTGTGACTCAGT 57.700 37.500 11.73 0.00 0.00 3.41
4401 7167 6.988580 CCATATATGTTGTGTGACTCAGTGAT 59.011 38.462 11.73 0.00 0.00 3.06
4402 7168 7.496920 CCATATATGTTGTGTGACTCAGTGATT 59.503 37.037 11.73 0.00 0.00 2.57
4414 7526 2.352651 CTCAGTGATTTGGTGTATGGCG 59.647 50.000 0.00 0.00 0.00 5.69
4419 7531 1.670811 GATTTGGTGTATGGCGTGGAG 59.329 52.381 0.00 0.00 0.00 3.86
4437 7660 0.250901 AGCCAATGCGAACCTGTTCT 60.251 50.000 8.28 0.00 44.33 3.01
4446 7669 3.006430 TGCGAACCTGTTCTATCTCACAA 59.994 43.478 8.28 0.00 37.44 3.33
4503 9346 1.134431 CCAACAAAGCTGCCAAAAGGT 60.134 47.619 0.00 0.00 0.00 3.50
4569 9758 3.811702 CCAGCTTCAGGGACTCCA 58.188 61.111 0.00 0.00 34.60 3.86
4570 9759 1.601171 CCAGCTTCAGGGACTCCAG 59.399 63.158 0.00 0.00 34.60 3.86
4571 9760 0.906756 CCAGCTTCAGGGACTCCAGA 60.907 60.000 0.00 0.00 34.60 3.86
4572 9761 0.248843 CAGCTTCAGGGACTCCAGAC 59.751 60.000 0.00 0.00 34.60 3.51
4573 9762 0.178921 AGCTTCAGGGACTCCAGACA 60.179 55.000 0.00 0.00 34.60 3.41
4583 9791 3.751698 GGGACTCCAGACACAATTAACAC 59.248 47.826 0.00 0.00 0.00 3.32
4658 9869 7.653311 CACGGTAGATCACATCTCATAAAATCA 59.347 37.037 0.00 0.00 40.76 2.57
4660 9871 7.869937 CGGTAGATCACATCTCATAAAATCAGT 59.130 37.037 0.00 0.00 40.76 3.41
4734 9945 3.550431 CGCCGGATGGATCCCACT 61.550 66.667 5.05 0.00 44.24 4.00
4773 9984 4.213270 TGCGGAGAATCTGTAAAACTTGTG 59.787 41.667 0.00 0.00 45.47 3.33
4864 10200 3.951979 GGATGAATGAATGTCGTCCAC 57.048 47.619 7.63 0.00 46.45 4.02
4920 10256 4.207165 CTGGGAGGAAAACAAGAAGACAA 58.793 43.478 0.00 0.00 0.00 3.18
4940 10276 7.788026 AGACAATAAGGATAATACCAACGACA 58.212 34.615 0.00 0.00 0.00 4.35
4941 10277 7.709613 AGACAATAAGGATAATACCAACGACAC 59.290 37.037 0.00 0.00 0.00 3.67
4942 10278 7.332557 ACAATAAGGATAATACCAACGACACA 58.667 34.615 0.00 0.00 0.00 3.72
4945 10281 3.773119 AGGATAATACCAACGACACACCT 59.227 43.478 0.00 0.00 0.00 4.00
4946 10282 4.957954 AGGATAATACCAACGACACACCTA 59.042 41.667 0.00 0.00 0.00 3.08
4973 10309 9.944376 GCTAGTATGATCAATAACCATAGGAAA 57.056 33.333 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 160 6.481313 TCATAATGAGCTCAATGTGTCTAAGC 59.519 38.462 22.50 0.00 0.00 3.09
165 166 4.758688 TCGTCATAATGAGCTCAATGTGT 58.241 39.130 22.50 0.00 0.00 3.72
185 186 1.498865 GCCCACTCGGTAATGCATCG 61.499 60.000 0.00 0.00 0.00 3.84
228 229 2.232452 CGAGACTGGGATTTGTCACTCT 59.768 50.000 0.00 0.00 35.81 3.24
289 294 1.389555 GGTGGCTATAAAGGTGCACC 58.610 55.000 29.22 29.22 0.00 5.01
476 486 5.310331 TGGGCATTAGGATCACATCATTAGA 59.690 40.000 0.00 0.00 0.00 2.10
505 523 6.795144 TCAATAGATGGTTACGGTTTCCTA 57.205 37.500 0.00 0.00 0.00 2.94
530 548 3.626670 GCCTCTAGTTGACTAGCTCGTTA 59.373 47.826 12.30 0.00 44.24 3.18
582 600 7.258022 TCCGAAAATCATAATACATGTGTGG 57.742 36.000 9.11 0.00 0.00 4.17
596 614 9.114952 TGCTATAATTGTGTTATCCGAAAATCA 57.885 29.630 0.00 0.00 0.00 2.57
602 620 7.713073 TGTTCATGCTATAATTGTGTTATCCGA 59.287 33.333 0.00 0.00 0.00 4.55
694 712 4.339247 CAGTGTGGTCTTCTTGTTGGAAAT 59.661 41.667 0.00 0.00 0.00 2.17
695 713 3.694072 CAGTGTGGTCTTCTTGTTGGAAA 59.306 43.478 0.00 0.00 0.00 3.13
742 760 2.438021 TGGGTATCTTACTGCCATGGAC 59.562 50.000 18.40 7.64 0.00 4.02
767 786 5.106631 AGATATATTCAGAGGAACCCCCA 57.893 43.478 0.00 0.00 35.46 4.96
775 794 7.669722 GCTAGGAGGGATAGATATATTCAGAGG 59.330 44.444 0.00 0.00 0.00 3.69
787 806 7.624077 ACTTTTTCTTTAGCTAGGAGGGATAGA 59.376 37.037 0.00 0.00 0.00 1.98
793 812 6.372937 CCTTCACTTTTTCTTTAGCTAGGAGG 59.627 42.308 0.00 0.00 0.00 4.30
806 825 4.075682 CTCCCTCCTTCCTTCACTTTTTC 58.924 47.826 0.00 0.00 0.00 2.29
808 827 2.376855 CCTCCCTCCTTCCTTCACTTTT 59.623 50.000 0.00 0.00 0.00 2.27
809 828 1.988846 CCTCCCTCCTTCCTTCACTTT 59.011 52.381 0.00 0.00 0.00 2.66
810 829 1.152271 TCCTCCCTCCTTCCTTCACTT 59.848 52.381 0.00 0.00 0.00 3.16
811 830 0.793617 TCCTCCCTCCTTCCTTCACT 59.206 55.000 0.00 0.00 0.00 3.41
812 831 1.557371 CTTCCTCCCTCCTTCCTTCAC 59.443 57.143 0.00 0.00 0.00 3.18
813 832 1.555765 CCTTCCTCCCTCCTTCCTTCA 60.556 57.143 0.00 0.00 0.00 3.02
814 833 1.208706 CCTTCCTCCCTCCTTCCTTC 58.791 60.000 0.00 0.00 0.00 3.46
815 834 0.800239 TCCTTCCTCCCTCCTTCCTT 59.200 55.000 0.00 0.00 0.00 3.36
816 835 0.800239 TTCCTTCCTCCCTCCTTCCT 59.200 55.000 0.00 0.00 0.00 3.36
817 836 1.670059 TTTCCTTCCTCCCTCCTTCC 58.330 55.000 0.00 0.00 0.00 3.46
818 837 2.645297 ACTTTTCCTTCCTCCCTCCTTC 59.355 50.000 0.00 0.00 0.00 3.46
819 838 2.376855 CACTTTTCCTTCCTCCCTCCTT 59.623 50.000 0.00 0.00 0.00 3.36
820 839 1.988846 CACTTTTCCTTCCTCCCTCCT 59.011 52.381 0.00 0.00 0.00 3.69
821 840 1.985895 TCACTTTTCCTTCCTCCCTCC 59.014 52.381 0.00 0.00 0.00 4.30
822 841 3.680490 CTTCACTTTTCCTTCCTCCCTC 58.320 50.000 0.00 0.00 0.00 4.30
823 842 2.224892 GCTTCACTTTTCCTTCCTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
824 843 2.163509 GCTTCACTTTTCCTTCCTCCC 58.836 52.381 0.00 0.00 0.00 4.30
825 844 3.147553 AGCTTCACTTTTCCTTCCTCC 57.852 47.619 0.00 0.00 0.00 4.30
826 845 3.304996 GCAAGCTTCACTTTTCCTTCCTC 60.305 47.826 0.00 0.00 36.04 3.71
827 846 2.625314 GCAAGCTTCACTTTTCCTTCCT 59.375 45.455 0.00 0.00 36.04 3.36
828 847 2.362077 TGCAAGCTTCACTTTTCCTTCC 59.638 45.455 0.00 0.00 36.04 3.46
829 848 3.715628 TGCAAGCTTCACTTTTCCTTC 57.284 42.857 0.00 0.00 36.04 3.46
830 849 3.006217 GGATGCAAGCTTCACTTTTCCTT 59.994 43.478 0.00 0.00 36.04 3.36
831 850 2.560105 GGATGCAAGCTTCACTTTTCCT 59.440 45.455 0.00 0.00 36.04 3.36
832 851 2.297033 TGGATGCAAGCTTCACTTTTCC 59.703 45.455 0.00 3.07 36.04 3.13
833 852 3.648339 TGGATGCAAGCTTCACTTTTC 57.352 42.857 0.00 0.00 36.04 2.29
872 891 1.379527 CCCGGTTAATTCTGACAGGC 58.620 55.000 0.00 0.00 30.92 4.85
873 892 1.065418 AGCCCGGTTAATTCTGACAGG 60.065 52.381 0.00 0.00 0.00 4.00
944 974 3.560025 GGAGAAATCCAACCTGCTGAGAA 60.560 47.826 0.00 0.00 0.00 2.87
1104 1145 1.203428 TGGGAAGATGAGAGGTGGGAA 60.203 52.381 0.00 0.00 0.00 3.97
1109 1150 4.067944 ACTTACTGGGAAGATGAGAGGT 57.932 45.455 0.00 0.00 0.00 3.85
1110 1151 5.659079 AGTTACTTACTGGGAAGATGAGAGG 59.341 44.000 0.00 0.00 35.19 3.69
1130 1171 2.185387 GTGGGAGGTTAGCTGGAGTTA 58.815 52.381 0.00 0.00 0.00 2.24
1160 1201 0.886490 GGTGGTGAGCACAGGTCAAG 60.886 60.000 17.16 0.00 41.75 3.02
1163 1204 2.828868 TGGTGGTGAGCACAGGTC 59.171 61.111 17.16 0.00 0.00 3.85
1169 1210 1.152118 AGTAGGGTGGTGGTGAGCA 60.152 57.895 0.00 0.00 0.00 4.26
1170 1211 1.296715 CAGTAGGGTGGTGGTGAGC 59.703 63.158 0.00 0.00 0.00 4.26
1190 1232 1.534476 TGGTTCCCGCAGTACCTGA 60.534 57.895 0.00 0.00 32.44 3.86
1254 1565 1.305549 TTACTGGGAGGGGTCGACC 60.306 63.158 27.04 27.04 39.11 4.79
1281 1592 1.002533 GCTACCTGGGGGAGTGGTA 59.997 63.158 0.00 0.00 35.48 3.25
1312 1623 2.738587 TCAGCGGATAGGAGAAGAGT 57.261 50.000 0.00 0.00 0.00 3.24
1324 1635 2.099405 GGGGAAAATGAAATCAGCGGA 58.901 47.619 0.00 0.00 0.00 5.54
1616 1927 3.370846 CCTTCATCCACTTATCACAGGCA 60.371 47.826 0.00 0.00 0.00 4.75
1698 2009 2.808543 CTCACAGGAACCAAAGCACTAC 59.191 50.000 0.00 0.00 0.00 2.73
1699 2010 2.703536 TCTCACAGGAACCAAAGCACTA 59.296 45.455 0.00 0.00 0.00 2.74
1700 2011 1.490490 TCTCACAGGAACCAAAGCACT 59.510 47.619 0.00 0.00 0.00 4.40
1703 2014 2.262423 AGTCTCACAGGAACCAAAGC 57.738 50.000 0.00 0.00 0.00 3.51
1704 2015 3.808728 TGAAGTCTCACAGGAACCAAAG 58.191 45.455 0.00 0.00 0.00 2.77
1743 2054 1.017387 GCACCTTCCTATCCAAAGCG 58.983 55.000 0.00 0.00 0.00 4.68
1833 2144 1.692042 ATCCTCAGCACCTCCCCTG 60.692 63.158 0.00 0.00 0.00 4.45
1839 2150 0.622136 TCATTGCATCCTCAGCACCT 59.378 50.000 0.00 0.00 42.54 4.00
1856 2167 4.159321 CAGTCTTCACTGCTATCTCCTTCA 59.841 45.833 0.00 0.00 43.77 3.02
1869 2180 2.210013 TGCCGGAGCAGTCTTCACT 61.210 57.895 5.05 0.00 46.52 3.41
1870 2181 2.343758 TGCCGGAGCAGTCTTCAC 59.656 61.111 5.05 0.00 46.52 3.18
2064 2375 4.282449 GCAAAAATGGGGTAACTAACAGGT 59.718 41.667 0.00 0.00 0.00 4.00
2111 2422 8.931385 AATAAGCTATATGGTTGCAAAGTTTG 57.069 30.769 11.41 11.41 37.56 2.93
2112 2423 9.942850 AAAATAAGCTATATGGTTGCAAAGTTT 57.057 25.926 0.00 0.51 37.56 2.66
2123 2434 6.879458 ACTAGGCCGAAAAATAAGCTATATGG 59.121 38.462 0.00 0.00 0.00 2.74
2124 2435 7.907214 ACTAGGCCGAAAAATAAGCTATATG 57.093 36.000 0.00 0.00 0.00 1.78
2125 2436 9.654663 CTAACTAGGCCGAAAAATAAGCTATAT 57.345 33.333 0.00 0.00 0.00 0.86
2126 2437 7.601508 GCTAACTAGGCCGAAAAATAAGCTATA 59.398 37.037 0.00 0.00 0.00 1.31
2127 2438 6.427242 GCTAACTAGGCCGAAAAATAAGCTAT 59.573 38.462 0.00 0.00 0.00 2.97
2128 2439 5.756833 GCTAACTAGGCCGAAAAATAAGCTA 59.243 40.000 0.00 0.00 0.00 3.32
2141 2452 2.389715 TCTTGAGGAGCTAACTAGGCC 58.610 52.381 0.00 0.00 0.00 5.19
2195 2506 2.774439 TTCAAGTTTTGAGCGCCTTC 57.226 45.000 2.29 0.00 41.38 3.46
2200 2511 4.324402 GCCATTACATTCAAGTTTTGAGCG 59.676 41.667 0.00 0.00 41.38 5.03
2201 2512 5.346822 CAGCCATTACATTCAAGTTTTGAGC 59.653 40.000 0.00 0.00 41.38 4.26
2207 2518 7.472334 AAAGATCAGCCATTACATTCAAGTT 57.528 32.000 0.00 0.00 0.00 2.66
2248 2559 4.511527 TCAAGCAATCTGAGATGGTCTTC 58.488 43.478 0.00 0.00 0.00 2.87
2249 2560 4.564782 TCAAGCAATCTGAGATGGTCTT 57.435 40.909 0.00 0.00 0.00 3.01
2250 2561 4.019501 ACTTCAAGCAATCTGAGATGGTCT 60.020 41.667 0.00 0.00 0.00 3.85
2251 2562 4.260170 ACTTCAAGCAATCTGAGATGGTC 58.740 43.478 0.00 0.00 0.00 4.02
2255 2566 9.635520 CAAAATTTACTTCAAGCAATCTGAGAT 57.364 29.630 0.00 0.00 0.00 2.75
2358 2848 9.797556 GTGAAATTAGGTTTAACAGAACAAGTT 57.202 29.630 0.00 0.00 32.26 2.66
2360 2850 8.410141 TGGTGAAATTAGGTTTAACAGAACAAG 58.590 33.333 0.00 0.00 33.43 3.16
2361 2851 8.294954 TGGTGAAATTAGGTTTAACAGAACAA 57.705 30.769 0.00 0.00 33.43 2.83
2362 2852 7.013846 CCTGGTGAAATTAGGTTTAACAGAACA 59.986 37.037 0.00 0.00 33.43 3.18
2363 2853 7.229907 TCCTGGTGAAATTAGGTTTAACAGAAC 59.770 37.037 0.00 0.00 33.43 3.01
2364 2854 7.229907 GTCCTGGTGAAATTAGGTTTAACAGAA 59.770 37.037 0.00 0.00 33.43 3.02
2365 2855 6.713450 GTCCTGGTGAAATTAGGTTTAACAGA 59.287 38.462 0.00 0.00 33.43 3.41
2366 2856 6.072119 GGTCCTGGTGAAATTAGGTTTAACAG 60.072 42.308 0.00 0.00 33.43 3.16
2367 2857 5.771165 GGTCCTGGTGAAATTAGGTTTAACA 59.229 40.000 0.00 0.00 33.43 2.41
2368 2858 5.771165 TGGTCCTGGTGAAATTAGGTTTAAC 59.229 40.000 0.00 0.00 31.31 2.01
2369 2859 5.954757 TGGTCCTGGTGAAATTAGGTTTAA 58.045 37.500 0.00 0.00 33.30 1.52
2370 2860 5.586155 TGGTCCTGGTGAAATTAGGTTTA 57.414 39.130 0.00 0.00 33.30 2.01
2371 2861 4.463050 TGGTCCTGGTGAAATTAGGTTT 57.537 40.909 0.00 0.00 33.30 3.27
2406 2896 6.299141 AGAACTAATCCTGAGTTGCTCAAAA 58.701 36.000 0.37 0.00 40.18 2.44
2407 2897 5.869579 AGAACTAATCCTGAGTTGCTCAAA 58.130 37.500 0.37 0.00 40.18 2.69
2408 2898 5.489792 AGAACTAATCCTGAGTTGCTCAA 57.510 39.130 0.37 0.00 40.18 3.02
2409 2899 5.489792 AAGAACTAATCCTGAGTTGCTCA 57.510 39.130 0.00 0.00 37.27 4.26
2410 2900 5.934625 TGAAAGAACTAATCCTGAGTTGCTC 59.065 40.000 0.00 0.00 37.27 4.26
2416 2906 6.706295 AGGAAGTGAAAGAACTAATCCTGAG 58.294 40.000 0.00 0.00 36.48 3.35
2431 2921 4.761975 ACAACAGTTAACGAGGAAGTGAA 58.238 39.130 0.00 0.00 32.56 3.18
2454 2944 7.663493 ACAAATTAGAGAGAAAAGGAAGACAGG 59.337 37.037 0.00 0.00 0.00 4.00
2455 2945 8.614469 ACAAATTAGAGAGAAAAGGAAGACAG 57.386 34.615 0.00 0.00 0.00 3.51
2457 2947 9.157104 CCTACAAATTAGAGAGAAAAGGAAGAC 57.843 37.037 0.00 0.00 0.00 3.01
2585 3082 2.509336 CGCTCGCAAGGTACCCAG 60.509 66.667 8.74 2.08 38.47 4.45
2592 3089 4.107051 CCAAAGGCGCTCGCAAGG 62.107 66.667 16.36 7.69 44.11 3.61
2625 3122 4.380841 AATACATGAGCAAATGCACAGG 57.619 40.909 14.27 14.27 45.99 4.00
2626 3123 4.032445 GCAAATACATGAGCAAATGCACAG 59.968 41.667 11.03 6.30 44.25 3.66
2627 3124 3.927758 GCAAATACATGAGCAAATGCACA 59.072 39.130 7.94 7.94 45.04 4.57
2628 3125 3.927758 TGCAAATACATGAGCAAATGCAC 59.072 39.130 8.28 1.72 45.16 4.57
2629 3126 4.189639 TGCAAATACATGAGCAAATGCA 57.810 36.364 8.28 5.67 45.16 3.96
2630 3127 4.210537 GGATGCAAATACATGAGCAAATGC 59.789 41.667 0.00 0.00 40.76 3.56
2631 3128 5.462068 CAGGATGCAAATACATGAGCAAATG 59.538 40.000 0.00 0.00 40.76 2.32
2632 3129 5.128171 ACAGGATGCAAATACATGAGCAAAT 59.872 36.000 0.00 0.00 42.53 2.32
2633 3130 4.463539 ACAGGATGCAAATACATGAGCAAA 59.536 37.500 0.00 0.00 42.53 3.68
2634 3131 4.018490 ACAGGATGCAAATACATGAGCAA 58.982 39.130 0.00 0.00 42.53 3.91
2635 3132 3.379057 CACAGGATGCAAATACATGAGCA 59.621 43.478 0.00 1.77 42.53 4.26
2636 3133 3.961182 CACAGGATGCAAATACATGAGC 58.039 45.455 0.00 0.00 42.53 4.26
2649 3146 2.165641 ACATGAGCAAATGCACAGGATG 59.834 45.455 20.90 12.25 43.98 3.51
2650 3147 2.453521 ACATGAGCAAATGCACAGGAT 58.546 42.857 20.90 5.84 43.98 3.24
2651 3148 1.913778 ACATGAGCAAATGCACAGGA 58.086 45.000 20.90 0.00 43.98 3.86
2692 3189 6.091441 GTGTATGACAACTTTGGTTTGCAAAA 59.909 34.615 14.67 0.00 32.73 2.44
2733 3230 6.829811 TCAAATCCTCAACTGCATTCATATCA 59.170 34.615 0.00 0.00 0.00 2.15
2792 3289 5.692204 AGATGTTTTCCGATTGCTAGATACG 59.308 40.000 0.00 0.00 0.00 3.06
2866 3363 7.761038 TCTGTATCAGTACACCTATACATGG 57.239 40.000 0.00 0.00 35.94 3.66
3013 3510 3.638592 TAAAGCAAGGCCCCGGAGC 62.639 63.158 0.73 0.00 0.00 4.70
3231 3728 8.611654 AAAGCTTTATCTGCAATCACAAAAAT 57.388 26.923 10.72 0.00 0.00 1.82
3264 3765 1.776662 TCCTCCACAATCCCTAGTCG 58.223 55.000 0.00 0.00 0.00 4.18
3411 3912 4.015084 TCGTAGCAGAGTTAAGGCTTAGT 58.985 43.478 7.09 0.00 39.01 2.24
3494 3995 3.185797 AGTTAAAACTTTCGCTAGCCACG 59.814 43.478 9.66 0.00 35.21 4.94
3497 3998 3.431233 ACGAGTTAAAACTTTCGCTAGCC 59.569 43.478 9.66 0.00 39.88 3.93
3498 3999 4.149396 TGACGAGTTAAAACTTTCGCTAGC 59.851 41.667 4.06 4.06 39.88 3.42
3499 4000 5.817616 TGACGAGTTAAAACTTTCGCTAG 57.182 39.130 0.00 0.00 39.88 3.42
3501 4002 5.235616 TGAATGACGAGTTAAAACTTTCGCT 59.764 36.000 0.00 0.00 39.88 4.93
3502 4003 5.437263 TGAATGACGAGTTAAAACTTTCGC 58.563 37.500 0.00 0.00 39.88 4.70
3503 4004 8.488979 AAATGAATGACGAGTTAAAACTTTCG 57.511 30.769 0.00 0.36 39.88 3.46
3504 4005 9.665264 AGAAATGAATGACGAGTTAAAACTTTC 57.335 29.630 0.00 0.00 39.88 2.62
3962 6240 1.062587 GGCGAAACATCTGATGGAACG 59.937 52.381 20.83 20.17 33.60 3.95
4055 6334 6.292114 GCGTTTTACAACAAAATTCTCCCAAG 60.292 38.462 0.00 0.00 32.54 3.61
4060 6339 7.630606 CACAAAGCGTTTTACAACAAAATTCTC 59.369 33.333 0.00 0.00 32.54 2.87
4094 6373 4.041444 AGTCCAGAATCCTGATGGCTATTC 59.959 45.833 0.00 0.00 43.02 1.75
4159 6438 1.409064 TCCATCGTCCGAAATCTGGAG 59.591 52.381 5.82 0.00 35.82 3.86
4236 6515 6.811954 TGTATCTCTGTGTGTGTGAGTAAAA 58.188 36.000 0.00 0.00 0.00 1.52
4253 6947 4.991056 TGTGTGACTCTGCTTTTGTATCTC 59.009 41.667 0.00 0.00 0.00 2.75
4303 7069 6.394809 TCGTGTGATATGTTGTGTGACTTAT 58.605 36.000 0.00 0.00 0.00 1.73
4305 7071 4.627058 TCGTGTGATATGTTGTGTGACTT 58.373 39.130 0.00 0.00 0.00 3.01
4308 7074 5.050431 CAGTTTCGTGTGATATGTTGTGTGA 60.050 40.000 0.00 0.00 0.00 3.58
4309 7075 5.139482 CAGTTTCGTGTGATATGTTGTGTG 58.861 41.667 0.00 0.00 0.00 3.82
4311 7077 5.342806 ACAGTTTCGTGTGATATGTTGTG 57.657 39.130 0.00 0.00 0.00 3.33
4313 7079 6.706055 ACTACAGTTTCGTGTGATATGTTG 57.294 37.500 0.00 0.00 31.46 3.33
4314 7080 6.810182 GGTACTACAGTTTCGTGTGATATGTT 59.190 38.462 0.00 0.00 31.46 2.71
4315 7081 6.071784 TGGTACTACAGTTTCGTGTGATATGT 60.072 38.462 0.00 0.00 31.46 2.29
4316 7082 6.327154 TGGTACTACAGTTTCGTGTGATATG 58.673 40.000 0.00 0.00 31.46 1.78
4317 7083 6.519679 TGGTACTACAGTTTCGTGTGATAT 57.480 37.500 0.00 0.00 31.46 1.63
4318 7084 5.963176 TGGTACTACAGTTTCGTGTGATA 57.037 39.130 0.00 0.00 31.46 2.15
4321 7087 6.643770 ACTTATTGGTACTACAGTTTCGTGTG 59.356 38.462 0.00 0.00 31.46 3.82
4323 7089 6.864685 TGACTTATTGGTACTACAGTTTCGTG 59.135 38.462 0.00 0.00 0.00 4.35
4324 7090 6.865205 GTGACTTATTGGTACTACAGTTTCGT 59.135 38.462 0.00 0.00 0.00 3.85
4325 7091 6.864685 TGTGACTTATTGGTACTACAGTTTCG 59.135 38.462 0.00 0.00 0.00 3.46
4326 7092 7.654520 TGTGTGACTTATTGGTACTACAGTTTC 59.345 37.037 0.00 0.00 0.00 2.78
4327 7093 7.502696 TGTGTGACTTATTGGTACTACAGTTT 58.497 34.615 0.00 0.00 0.00 2.66
4328 7094 7.058023 TGTGTGACTTATTGGTACTACAGTT 57.942 36.000 0.00 0.00 0.00 3.16
4329 7095 6.659745 TGTGTGACTTATTGGTACTACAGT 57.340 37.500 0.00 0.00 0.00 3.55
4330 7096 6.926826 TGTTGTGTGACTTATTGGTACTACAG 59.073 38.462 0.00 0.00 0.00 2.74
4331 7097 6.818233 TGTTGTGTGACTTATTGGTACTACA 58.182 36.000 0.00 0.00 0.00 2.74
4333 7099 9.811995 GATATGTTGTGTGACTTATTGGTACTA 57.188 33.333 0.00 0.00 0.00 1.82
4334 7100 8.318412 TGATATGTTGTGTGACTTATTGGTACT 58.682 33.333 0.00 0.00 0.00 2.73
4335 7101 8.388103 GTGATATGTTGTGTGACTTATTGGTAC 58.612 37.037 0.00 0.00 0.00 3.34
4337 7103 6.939730 TGTGATATGTTGTGTGACTTATTGGT 59.060 34.615 0.00 0.00 0.00 3.67
4338 7104 7.376435 TGTGATATGTTGTGTGACTTATTGG 57.624 36.000 0.00 0.00 0.00 3.16
4339 7105 8.667463 TCATGTGATATGTTGTGTGACTTATTG 58.333 33.333 0.00 0.00 0.00 1.90
4340 7106 8.791327 TCATGTGATATGTTGTGTGACTTATT 57.209 30.769 0.00 0.00 0.00 1.40
4342 7108 8.503196 GTTTCATGTGATATGTTGTGTGACTTA 58.497 33.333 0.00 0.00 0.00 2.24
4345 7111 6.798476 CAGTTTCATGTGATATGTTGTGTGAC 59.202 38.462 0.00 0.00 0.00 3.67
4346 7112 6.486320 ACAGTTTCATGTGATATGTTGTGTGA 59.514 34.615 0.00 0.00 30.46 3.58
4347 7113 6.671190 ACAGTTTCATGTGATATGTTGTGTG 58.329 36.000 0.00 0.00 30.46 3.82
4348 7114 6.882610 ACAGTTTCATGTGATATGTTGTGT 57.117 33.333 0.00 0.00 30.46 3.72
4352 7118 8.318412 TGGTACTACAGTTTCATGTGATATGTT 58.682 33.333 0.00 0.00 34.56 2.71
4353 7119 7.847096 TGGTACTACAGTTTCATGTGATATGT 58.153 34.615 0.00 0.00 34.56 2.29
4358 7124 9.981114 CATATATGGTACTACAGTTTCATGTGA 57.019 33.333 4.68 0.00 34.56 3.58
4363 7129 9.594478 CACAACATATATGGTACTACAGTTTCA 57.406 33.333 16.96 0.00 0.00 2.69
4365 7131 9.378551 CACACAACATATATGGTACTACAGTTT 57.621 33.333 16.96 0.00 0.00 2.66
4366 7132 8.755028 TCACACAACATATATGGTACTACAGTT 58.245 33.333 16.96 0.00 0.00 3.16
4367 7133 8.195436 GTCACACAACATATATGGTACTACAGT 58.805 37.037 16.96 0.73 0.00 3.55
4368 7134 8.414003 AGTCACACAACATATATGGTACTACAG 58.586 37.037 16.96 0.10 0.00 2.74
4370 7136 8.410912 TGAGTCACACAACATATATGGTACTAC 58.589 37.037 16.96 5.48 0.00 2.73
4372 7138 7.124298 ACTGAGTCACACAACATATATGGTACT 59.876 37.037 16.96 9.91 0.00 2.73
4373 7139 7.222805 CACTGAGTCACACAACATATATGGTAC 59.777 40.741 16.96 5.20 0.00 3.34
4374 7140 7.123547 TCACTGAGTCACACAACATATATGGTA 59.876 37.037 16.96 0.00 0.00 3.25
4375 7141 6.070824 TCACTGAGTCACACAACATATATGGT 60.071 38.462 16.96 7.64 0.00 3.55
4377 7143 8.429493 AATCACTGAGTCACACAACATATATG 57.571 34.615 11.29 11.29 0.00 1.78
4378 7144 8.886719 CAAATCACTGAGTCACACAACATATAT 58.113 33.333 0.00 0.00 0.00 0.86
4379 7145 7.334171 CCAAATCACTGAGTCACACAACATATA 59.666 37.037 0.00 0.00 0.00 0.86
4380 7146 6.149973 CCAAATCACTGAGTCACACAACATAT 59.850 38.462 0.00 0.00 0.00 1.78
4381 7147 5.469760 CCAAATCACTGAGTCACACAACATA 59.530 40.000 0.00 0.00 0.00 2.29
4382 7148 4.276678 CCAAATCACTGAGTCACACAACAT 59.723 41.667 0.00 0.00 0.00 2.71
4384 7150 3.627577 ACCAAATCACTGAGTCACACAAC 59.372 43.478 0.00 0.00 0.00 3.32
4385 7151 3.627123 CACCAAATCACTGAGTCACACAA 59.373 43.478 0.00 0.00 0.00 3.33
4386 7152 3.205338 CACCAAATCACTGAGTCACACA 58.795 45.455 0.00 0.00 0.00 3.72
4387 7153 3.206150 ACACCAAATCACTGAGTCACAC 58.794 45.455 0.00 0.00 0.00 3.82
4388 7154 3.558931 ACACCAAATCACTGAGTCACA 57.441 42.857 0.00 0.00 0.00 3.58
4389 7155 4.393062 CCATACACCAAATCACTGAGTCAC 59.607 45.833 0.00 0.00 0.00 3.67
4390 7156 4.578871 CCATACACCAAATCACTGAGTCA 58.421 43.478 0.00 0.00 0.00 3.41
4392 7158 3.347216 GCCATACACCAAATCACTGAGT 58.653 45.455 0.00 0.00 0.00 3.41
4393 7159 2.352651 CGCCATACACCAAATCACTGAG 59.647 50.000 0.00 0.00 0.00 3.35
4394 7160 2.290008 ACGCCATACACCAAATCACTGA 60.290 45.455 0.00 0.00 0.00 3.41
4395 7161 2.083774 ACGCCATACACCAAATCACTG 58.916 47.619 0.00 0.00 0.00 3.66
4396 7162 2.083774 CACGCCATACACCAAATCACT 58.916 47.619 0.00 0.00 0.00 3.41
4397 7163 1.132262 CCACGCCATACACCAAATCAC 59.868 52.381 0.00 0.00 0.00 3.06
4398 7164 1.003696 TCCACGCCATACACCAAATCA 59.996 47.619 0.00 0.00 0.00 2.57
4401 7167 0.958382 GCTCCACGCCATACACCAAA 60.958 55.000 0.00 0.00 0.00 3.28
4402 7168 1.376683 GCTCCACGCCATACACCAA 60.377 57.895 0.00 0.00 0.00 3.67
4414 7526 1.675641 AGGTTCGCATTGGCTCCAC 60.676 57.895 0.00 0.00 38.10 4.02
4419 7531 1.448985 TAGAACAGGTTCGCATTGGC 58.551 50.000 6.52 0.00 43.97 4.52
4446 7669 7.790823 AGCAGCATTTTCTGTTGTTAAAATT 57.209 28.000 0.00 0.00 38.27 1.82
4503 9346 5.607477 ACGTCATTTTTGTCTAGGAACAGA 58.393 37.500 0.00 0.00 0.00 3.41
4538 9727 5.298989 TGAAGCTGGGAGTTGTTAACTTA 57.701 39.130 7.22 0.00 43.03 2.24
4568 9757 8.826710 TCTCTGTTAAAGTGTTAATTGTGTCTG 58.173 33.333 0.00 0.00 31.94 3.51
4569 9758 8.958119 TCTCTGTTAAAGTGTTAATTGTGTCT 57.042 30.769 0.00 0.00 31.94 3.41
4583 9791 9.930693 ACTTCACCTTAGTATTCTCTGTTAAAG 57.069 33.333 0.00 0.00 0.00 1.85
4596 9804 6.212791 AGTTTGATGGCTACTTCACCTTAGTA 59.787 38.462 0.00 0.00 31.32 1.82
4602 9810 4.082733 GGAAAGTTTGATGGCTACTTCACC 60.083 45.833 0.00 0.00 31.26 4.02
4611 9819 3.507233 TGTGAGATGGAAAGTTTGATGGC 59.493 43.478 0.00 0.00 0.00 4.40
4661 9872 9.476202 GGAGCAACAAGAAGTTAATTTTGTTAT 57.524 29.630 3.94 0.00 40.62 1.89
4734 9945 1.219124 GCAGAGAGATTGCCGTGGA 59.781 57.895 0.00 0.00 35.54 4.02
4738 9949 1.591059 CTCCGCAGAGAGATTGCCG 60.591 63.158 0.00 0.00 43.39 5.69
4739 9950 1.819229 TCTCCGCAGAGAGATTGCC 59.181 57.895 0.00 0.00 44.42 4.52
4773 9984 7.067615 TGTCACTGAGATATACAAAGGAGAGAC 59.932 40.741 0.00 0.00 0.00 3.36
4864 10200 3.314541 ACTCGTAACCAAAGCTAGTGG 57.685 47.619 13.59 13.59 42.28 4.00
4920 10256 6.099269 AGGTGTGTCGTTGGTATTATCCTTAT 59.901 38.462 0.00 0.00 0.00 1.73
4934 10270 4.267536 TCATACTAGCTAGGTGTGTCGTT 58.732 43.478 24.35 2.98 0.00 3.85
4940 10276 7.509318 TGGTTATTGATCATACTAGCTAGGTGT 59.491 37.037 24.35 7.50 0.00 4.16
4941 10277 7.896811 TGGTTATTGATCATACTAGCTAGGTG 58.103 38.462 24.35 20.54 0.00 4.00
4942 10278 8.671987 ATGGTTATTGATCATACTAGCTAGGT 57.328 34.615 24.35 12.43 0.00 3.08
4945 10281 9.990868 TCCTATGGTTATTGATCATACTAGCTA 57.009 33.333 0.00 0.00 0.00 3.32
4946 10282 8.901472 TCCTATGGTTATTGATCATACTAGCT 57.099 34.615 0.00 0.00 0.00 3.32
4973 10309 3.722147 CGGAATACTACTGCATTCTGCT 58.278 45.455 0.34 0.00 45.31 4.24
4988 10324 4.083003 GGACAAAATCAGTGTTGCGGAATA 60.083 41.667 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.