Multiple sequence alignment - TraesCS5D01G512300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G512300 chr5D 100.000 6972 0 0 1 6972 536542572 536535601 0.000000e+00 12875
1 TraesCS5D01G512300 chr5D 92.208 77 4 1 6312 6388 496974179 496974105 2.660000e-19 108
2 TraesCS5D01G512300 chr5D 83.810 105 15 2 6058 6162 520889755 520889857 1.600000e-16 99
3 TraesCS5D01G512300 chr4A 92.616 2221 104 30 1899 4078 634734436 634736637 0.000000e+00 3138
4 TraesCS5D01G512300 chr4A 88.197 2313 162 48 4072 6305 634736679 634738959 0.000000e+00 2656
5 TraesCS5D01G512300 chr4A 92.646 979 41 16 943 1899 634733392 634734361 0.000000e+00 1380
6 TraesCS5D01G512300 chr4A 82.615 742 71 29 1 723 634731199 634731901 2.780000e-168 603
7 TraesCS5D01G512300 chr4A 86.136 339 43 4 10 346 703779018 703778682 5.140000e-96 363
8 TraesCS5D01G512300 chr4A 90.659 182 13 1 6795 6972 634739582 634739763 9.040000e-59 239
9 TraesCS5D01G512300 chr4A 85.799 169 13 6 751 919 634732207 634732364 1.200000e-37 169
10 TraesCS5D01G512300 chr5B 94.515 1878 91 7 1899 3770 677158150 677156279 0.000000e+00 2887
11 TraesCS5D01G512300 chr5B 92.500 1920 88 30 5 1899 677160113 677158225 0.000000e+00 2697
12 TraesCS5D01G512300 chr5B 90.735 1824 109 23 4329 6128 677155407 677153620 0.000000e+00 2377
13 TraesCS5D01G512300 chr5B 94.007 534 14 10 6445 6972 677152081 677151560 0.000000e+00 793
14 TraesCS5D01G512300 chr5B 88.235 272 12 9 3817 4078 677156280 677156019 2.440000e-79 307
15 TraesCS5D01G512300 chr5B 88.298 188 17 4 4141 4327 677155646 677155463 3.270000e-53 220
16 TraesCS5D01G512300 chr5B 87.742 155 2 1 6158 6295 677152257 677152103 1.560000e-36 165
17 TraesCS5D01G512300 chr3B 96.283 269 6 1 2140 2404 740527906 740528174 8.300000e-119 438
18 TraesCS5D01G512300 chr3B 94.424 269 11 1 2140 2404 103551902 103552170 1.810000e-110 411
19 TraesCS5D01G512300 chr3B 83.284 341 55 2 8 346 586160436 586160096 5.250000e-81 313
20 TraesCS5D01G512300 chr3B 82.456 285 48 2 2921 3204 236124716 236124999 1.500000e-61 248
21 TraesCS5D01G512300 chr3B 85.577 104 13 2 6057 6160 738298871 738298972 2.660000e-19 108
22 TraesCS5D01G512300 chr3B 83.962 106 15 2 6055 6160 384889967 384890070 4.450000e-17 100
23 TraesCS5D01G512300 chr7B 95.911 269 7 1 2140 2404 27320718 27320450 3.860000e-117 433
24 TraesCS5D01G512300 chr7B 95.911 269 7 1 2140 2404 572533722 572533990 3.860000e-117 433
25 TraesCS5D01G512300 chr1B 95.539 269 8 1 2140 2404 565901752 565901484 1.800000e-115 427
26 TraesCS5D01G512300 chr1B 94.052 269 12 1 2140 2404 36946546 36946814 8.420000e-109 405
27 TraesCS5D01G512300 chr1B 86.364 110 13 2 6053 6162 249210351 249210244 1.230000e-22 119
28 TraesCS5D01G512300 chr3D 83.255 424 57 12 7 424 88431454 88431869 1.840000e-100 377
29 TraesCS5D01G512300 chr3D 82.558 430 55 17 7 423 88430705 88431127 1.850000e-95 361
30 TraesCS5D01G512300 chr3D 82.807 285 47 2 2921 3204 159426829 159427112 3.230000e-63 254
31 TraesCS5D01G512300 chr3D 87.368 95 8 3 6071 6162 564304868 564304775 9.560000e-19 106
32 TraesCS5D01G512300 chr4D 81.395 430 56 19 9 420 50807608 50807185 5.210000e-86 329
33 TraesCS5D01G512300 chr4D 81.250 432 55 18 7 423 10636889 10637309 6.740000e-85 326
34 TraesCS5D01G512300 chr3A 80.556 432 64 16 7 423 105030373 105029947 1.460000e-81 315
35 TraesCS5D01G512300 chr3A 82.624 282 47 2 2924 3204 168839200 168838920 1.500000e-61 248
36 TraesCS5D01G512300 chr6D 93.182 88 5 1 6302 6388 448646171 448646084 2.040000e-25 128
37 TraesCS5D01G512300 chr4B 90.476 84 8 0 6305 6388 432949074 432948991 2.060000e-20 111
38 TraesCS5D01G512300 chr6B 88.764 89 9 1 6058 6146 644951222 644951309 2.660000e-19 108
39 TraesCS5D01G512300 chr2B 84.466 103 14 2 6058 6160 122921875 122921775 4.450000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G512300 chr5D 536535601 536542572 6971 True 12875.000000 12875 100.000000 1 6972 1 chr5D.!!$R2 6971
1 TraesCS5D01G512300 chr4A 634731199 634739763 8564 False 1364.166667 3138 88.755333 1 6972 6 chr4A.!!$F1 6971
2 TraesCS5D01G512300 chr5B 677151560 677160113 8553 True 1349.428571 2887 90.861714 5 6972 7 chr5B.!!$R1 6967
3 TraesCS5D01G512300 chr3D 88430705 88431869 1164 False 369.000000 377 82.906500 7 424 2 chr3D.!!$F2 417

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 1131 0.769247 AACTGGTGGGTGGTAAGACC 59.231 55.000 0.00 0.00 39.22 3.85 F
363 1132 1.295423 CTGGTGGGTGGTAAGACCG 59.705 63.158 0.00 0.00 42.58 4.79 F
1603 3677 0.238289 CCGATCTTGCTTTGTTGCGT 59.762 50.000 0.00 0.00 35.36 5.24 F
2232 4398 0.703488 TGGTTGGAGATCCATTGCCA 59.297 50.000 1.61 8.95 46.97 4.92 F
2254 4420 1.413812 TCATGTCAGATATGCGCACCT 59.586 47.619 14.90 7.73 0.00 4.00 F
3475 5655 1.594021 CAAAGCGGCCCAAACCAAC 60.594 57.895 0.00 0.00 0.00 3.77 F
5006 7614 0.111061 TGTTGCAGATTCTGGGCACT 59.889 50.000 15.28 0.00 37.26 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1343 3410 0.036388 TCAGGAACACGCTCATTCCC 60.036 55.000 6.21 0.0 44.78 3.97 R
2264 4430 0.693049 AATCTGTCAACGGAAGGCCT 59.307 50.000 0.00 0.0 34.49 5.19 R
3415 5595 1.079956 GGCGCATGCATTGGTTCAA 60.080 52.632 19.57 0.0 45.35 2.69 R
3621 5803 0.642710 AGTAGGCAGTATCCCACCCT 59.357 55.000 0.00 0.0 0.00 4.34 R
3622 5804 0.759346 CAGTAGGCAGTATCCCACCC 59.241 60.000 0.00 0.0 0.00 4.61 R
5097 7705 0.253327 AAGTTCCATTCGGAGAGCCC 59.747 55.000 0.00 0.0 44.10 5.19 R
6380 10368 0.032912 TAGTACGACCAGATGGCCCA 60.033 55.000 0.00 0.0 39.32 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 3.641437 ATAATAAATGGCATTGCGCGT 57.359 38.095 14.47 0.00 43.84 6.01
237 990 8.223769 ACGTATATGATGCGATTTCTGAATTTC 58.776 33.333 3.94 0.00 40.98 2.17
331 1086 8.757877 CCTTAATGGGATTTGGTTCTTTAATGA 58.242 33.333 0.00 0.00 0.00 2.57
362 1131 0.769247 AACTGGTGGGTGGTAAGACC 59.231 55.000 0.00 0.00 39.22 3.85
363 1132 1.295423 CTGGTGGGTGGTAAGACCG 59.705 63.158 0.00 0.00 42.58 4.79
415 1188 3.202373 GGCTAACAACTCCCCTTTAGGAT 59.798 47.826 0.00 0.00 38.24 3.24
436 1209 7.717568 AGGATTAGAGATACACATACACACAC 58.282 38.462 0.00 0.00 0.00 3.82
484 1257 6.604396 TCTTCTTCGTCCAACCTGTATATACA 59.396 38.462 14.75 14.75 34.56 2.29
515 1288 6.393171 CCTTCCCTTCTCATGTTTGATTTTC 58.607 40.000 0.00 0.00 0.00 2.29
526 1301 5.138125 TGTTTGATTTTCCCTTGCATCTC 57.862 39.130 0.00 0.00 0.00 2.75
593 1368 8.375465 CGTCCTACGTTTTATTAACTTACCAAG 58.625 37.037 0.00 0.00 36.74 3.61
668 1451 7.582667 AATAATAAGATGGCAGGTAAACCAC 57.417 36.000 1.26 0.00 39.19 4.16
729 1512 8.396390 CACACTAGAATGTACTAATAGACGTGT 58.604 37.037 0.00 0.00 30.29 4.49
747 1530 6.041637 AGACGTGTAATCATGGGCTAATCTAA 59.958 38.462 0.00 0.00 35.12 2.10
748 1531 6.223852 ACGTGTAATCATGGGCTAATCTAAG 58.776 40.000 0.00 0.00 35.12 2.18
749 1532 5.120830 CGTGTAATCATGGGCTAATCTAAGC 59.879 44.000 0.00 0.00 41.99 3.09
765 1826 9.178758 CTAATCTAAGCAGAATGTTTAAACCCT 57.821 33.333 15.59 7.40 41.25 4.34
766 1827 7.631717 ATCTAAGCAGAATGTTTAAACCCTC 57.368 36.000 15.59 11.39 41.25 4.30
767 1828 6.539173 TCTAAGCAGAATGTTTAAACCCTCA 58.461 36.000 15.59 0.00 41.25 3.86
768 1829 7.175104 TCTAAGCAGAATGTTTAAACCCTCAT 58.825 34.615 15.59 0.00 41.25 2.90
769 1830 6.670695 AAGCAGAATGTTTAAACCCTCATT 57.329 33.333 15.59 8.45 37.93 2.57
797 1858 8.554528 CAACACATAGGCAATTATCTAGTTCAG 58.445 37.037 0.00 0.00 0.00 3.02
801 1862 9.988815 ACATAGGCAATTATCTAGTTCAGTTAG 57.011 33.333 0.00 0.00 0.00 2.34
807 1868 9.989869 GCAATTATCTAGTTCAGTTAGGAAAAC 57.010 33.333 0.00 0.00 0.00 2.43
1325 3392 4.115199 GAGCGGCATTGGGTCCCT 62.115 66.667 10.00 0.00 0.00 4.20
1360 3430 0.250513 GAGGGAATGAGCGTGTTCCT 59.749 55.000 14.02 2.90 42.76 3.36
1446 3517 2.883386 AGTTCTCTGTACTCGTTTCGGT 59.117 45.455 0.00 0.00 0.00 4.69
1483 3557 2.059541 GAAAACGTCTGTTCTCCCTCG 58.940 52.381 0.00 0.00 37.31 4.63
1515 3589 0.614812 TTGGTAACGGGGGAGCTAAC 59.385 55.000 0.00 0.00 42.51 2.34
1602 3676 1.067199 GCCGATCTTGCTTTGTTGCG 61.067 55.000 0.00 0.00 35.36 4.85
1603 3677 0.238289 CCGATCTTGCTTTGTTGCGT 59.762 50.000 0.00 0.00 35.36 5.24
1604 3678 1.334960 CCGATCTTGCTTTGTTGCGTT 60.335 47.619 0.00 0.00 35.36 4.84
1605 3679 1.710249 CGATCTTGCTTTGTTGCGTTG 59.290 47.619 0.00 0.00 35.36 4.10
1606 3680 1.453148 GATCTTGCTTTGTTGCGTTGC 59.547 47.619 0.00 0.00 35.36 4.17
1623 3697 1.271856 TGCGTTTCTACATGAGGGGA 58.728 50.000 0.00 0.00 0.00 4.81
2008 4174 1.577468 TTCATATTGTAGTGCGGCCG 58.423 50.000 24.05 24.05 0.00 6.13
2090 4256 6.177610 GTTTATCCCACTCCACATGAAGTTA 58.822 40.000 0.00 0.00 0.00 2.24
2107 4273 7.395190 TGAAGTTATCTTGGTCCATGAATTG 57.605 36.000 11.25 0.00 33.64 2.32
2122 4288 4.422073 TGAATTGCCCTGGTAGTATCTG 57.578 45.455 0.00 0.00 0.00 2.90
2147 4313 7.122501 TGCATGTCATTATACAACCATTCACTT 59.877 33.333 0.00 0.00 32.02 3.16
2153 4319 8.673711 TCATTATACAACCATTCACTTAAGTGC 58.326 33.333 27.49 0.00 45.25 4.40
2162 4328 6.042143 CCATTCACTTAAGTGCTTTTGTTGT 58.958 36.000 27.49 5.49 45.25 3.32
2199 4365 4.471386 TGCTTTCCTTCTCCTGCTAGTTAT 59.529 41.667 0.00 0.00 0.00 1.89
2225 4391 2.696864 TCCTGGTGGTTGGAGATCC 58.303 57.895 0.00 0.00 34.23 3.36
2230 4396 1.106285 GGTGGTTGGAGATCCATTGC 58.894 55.000 1.61 0.00 46.97 3.56
2231 4397 1.106285 GTGGTTGGAGATCCATTGCC 58.894 55.000 1.61 6.55 46.97 4.52
2232 4398 0.703488 TGGTTGGAGATCCATTGCCA 59.297 50.000 1.61 8.95 46.97 4.92
2254 4420 1.413812 TCATGTCAGATATGCGCACCT 59.586 47.619 14.90 7.73 0.00 4.00
2264 4430 2.916702 ATGCGCACCTCTGATTCATA 57.083 45.000 14.90 0.00 0.00 2.15
2274 4440 2.366916 CTCTGATTCATAGGCCTTCCGT 59.633 50.000 12.58 0.00 37.47 4.69
2531 4697 9.345517 CATATATTGTTGTGGTCTTTCTGTTTG 57.654 33.333 0.00 0.00 0.00 2.93
2540 4706 4.022935 TGGTCTTTCTGTTTGCAATGCTAG 60.023 41.667 6.82 0.05 0.00 3.42
2569 4735 7.898309 CGTATTTTCTGGAAATTTACACTCGAG 59.102 37.037 11.84 11.84 38.80 4.04
2749 4915 6.536582 TGTCTAAAGCTTCTGATACTTGCATC 59.463 38.462 0.00 0.00 0.00 3.91
3079 5245 4.451900 TCTTCTCAACCACTGAAAAGGAC 58.548 43.478 0.00 0.00 33.53 3.85
3124 5290 5.788450 CTTGAGTATGTTCCTGAGACAGTT 58.212 41.667 0.00 0.00 0.00 3.16
3160 5326 5.178252 CAGACACTACAACAAGATGAACCAG 59.822 44.000 0.00 0.00 0.00 4.00
3415 5595 5.763204 CCATATTACCCAGCGTGTTAGAATT 59.237 40.000 0.00 0.00 0.00 2.17
3475 5655 1.594021 CAAAGCGGCCCAAACCAAC 60.594 57.895 0.00 0.00 0.00 3.77
3527 5708 3.808466 ATGCTGAATCTTAGACGCTGA 57.192 42.857 0.00 0.00 0.00 4.26
3533 5714 6.039382 TGCTGAATCTTAGACGCTGAGTAATA 59.961 38.462 0.00 0.00 0.00 0.98
3540 5721 7.649973 TCTTAGACGCTGAGTAATAAGGAATC 58.350 38.462 12.66 0.00 35.00 2.52
3541 5722 5.854010 AGACGCTGAGTAATAAGGAATCA 57.146 39.130 0.00 0.00 0.00 2.57
3580 5762 9.956640 ATTGTCTCAGATTATGGATCCTATTTC 57.043 33.333 14.23 5.35 35.21 2.17
3704 5887 5.762179 TCCCATTCTACAGTCTGAATTGT 57.238 39.130 6.91 2.28 31.35 2.71
3714 5897 4.022589 ACAGTCTGAATTGTGCTTCCAATG 60.023 41.667 6.91 0.00 35.30 2.82
3719 5902 3.005684 TGAATTGTGCTTCCAATGTGTCC 59.994 43.478 0.00 0.00 35.30 4.02
3780 5963 5.824904 TCTACAAACATACTACCTCCGTC 57.175 43.478 0.00 0.00 0.00 4.79
3785 5968 2.823959 ACATACTACCTCCGTCCCAAA 58.176 47.619 0.00 0.00 0.00 3.28
3789 5972 3.067684 ACTACCTCCGTCCCAAAAATG 57.932 47.619 0.00 0.00 0.00 2.32
3798 5981 3.995705 CCGTCCCAAAAATGTAAGACGTA 59.004 43.478 9.20 0.00 44.06 3.57
3802 5985 7.079475 CGTCCCAAAAATGTAAGACGTATTTT 58.921 34.615 0.00 0.11 41.48 1.82
3803 5986 7.592164 CGTCCCAAAAATGTAAGACGTATTTTT 59.408 33.333 0.00 6.81 41.86 1.94
3808 6018 8.496872 AAAAATGTAAGACGTATTTTTGGACG 57.503 30.769 14.71 0.00 40.49 4.79
3812 6022 2.968675 AGACGTATTTTTGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
3828 6038 5.359292 GGACGGAGGTAGTATATGAATACCC 59.641 48.000 8.46 0.00 39.90 3.69
3883 6100 6.183360 GCCCAGTTACTTTGGATAATTTCCTC 60.183 42.308 2.22 0.00 45.68 3.71
3999 6216 8.463930 TTCTGGTAAGTTGAAGACATCATTTT 57.536 30.769 0.00 0.00 38.03 1.82
4000 6217 9.567776 TTCTGGTAAGTTGAAGACATCATTTTA 57.432 29.630 0.00 0.00 38.03 1.52
4001 6218 8.999431 TCTGGTAAGTTGAAGACATCATTTTAC 58.001 33.333 6.41 6.41 38.03 2.01
4003 6220 8.783093 TGGTAAGTTGAAGACATCATTTTACTG 58.217 33.333 11.40 0.00 38.03 2.74
4004 6221 8.784043 GGTAAGTTGAAGACATCATTTTACTGT 58.216 33.333 11.40 0.00 38.03 3.55
4005 6222 9.599322 GTAAGTTGAAGACATCATTTTACTGTG 57.401 33.333 0.00 0.00 38.03 3.66
4006 6223 8.450578 AAGTTGAAGACATCATTTTACTGTGA 57.549 30.769 0.00 0.00 38.03 3.58
4007 6224 8.450578 AGTTGAAGACATCATTTTACTGTGAA 57.549 30.769 0.00 0.00 38.03 3.18
4008 6225 8.345565 AGTTGAAGACATCATTTTACTGTGAAC 58.654 33.333 0.00 0.00 38.03 3.18
4009 6226 8.345565 GTTGAAGACATCATTTTACTGTGAACT 58.654 33.333 0.00 0.00 38.03 3.01
4010 6227 8.450578 TGAAGACATCATTTTACTGTGAACTT 57.549 30.769 0.00 0.00 31.50 2.66
4087 6466 1.902508 CTGGTGTCTGGTACATCTGGT 59.097 52.381 0.00 0.00 40.15 4.00
4115 6494 8.008332 TGTCCTATATTGACTAATCCCACACTA 58.992 37.037 6.63 0.00 33.83 2.74
4160 6687 7.478322 AGTCACTGTGATTTCATTTATGATGC 58.522 34.615 14.37 0.00 36.56 3.91
4167 6694 9.571810 TGTGATTTCATTTATGATGCTGTTTAC 57.428 29.630 0.00 0.00 36.56 2.01
4199 6726 9.981460 ATTTGAAAGTTCAGGATTAGGTCTAAT 57.019 29.630 3.15 3.15 38.61 1.73
4204 6731 8.966069 AAGTTCAGGATTAGGTCTAATAAAGC 57.034 34.615 3.49 0.00 36.02 3.51
4206 6733 7.988028 AGTTCAGGATTAGGTCTAATAAAGCAC 59.012 37.037 3.49 0.50 36.02 4.40
4209 6736 8.325787 TCAGGATTAGGTCTAATAAAGCACAAA 58.674 33.333 3.49 0.00 36.02 2.83
4210 6737 8.956426 CAGGATTAGGTCTAATAAAGCACAAAA 58.044 33.333 3.49 0.00 36.02 2.44
4250 6777 9.221775 CTTAATTTCGTAAGTATGCAACCATTC 57.778 33.333 0.00 0.00 39.48 2.67
4251 6778 6.751514 ATTTCGTAAGTATGCAACCATTCA 57.248 33.333 0.00 0.00 39.48 2.57
4344 6934 4.371855 ACTTCGAAGATAATGTCGAGCA 57.628 40.909 31.08 0.00 46.10 4.26
4418 7008 1.492176 TCTCATGCCTCCCTTTGGATC 59.508 52.381 0.00 0.00 40.80 3.36
4422 7012 0.846427 TGCCTCCCTTTGGATCCACT 60.846 55.000 15.91 0.00 40.80 4.00
4423 7013 0.394899 GCCTCCCTTTGGATCCACTG 60.395 60.000 15.91 10.08 40.80 3.66
4531 7131 3.609853 TGACCATCCTTGATACTGTTGC 58.390 45.455 0.00 0.00 0.00 4.17
4537 7137 5.125900 CCATCCTTGATACTGTTGCATTGAA 59.874 40.000 0.00 0.00 0.00 2.69
4696 7297 4.452455 GCTACTGAGTACACAACAGCAATT 59.548 41.667 16.07 0.85 35.38 2.32
4777 7378 7.370383 TGAAAAATCAGCAGTCCTAATTGTTC 58.630 34.615 0.00 0.00 0.00 3.18
4834 7437 4.012374 TCTTGGTCAAGGAGAAATCATGC 58.988 43.478 10.39 0.00 38.88 4.06
4846 7449 5.401531 AGAAATCATGCAGCTCACATTTT 57.598 34.783 0.00 0.00 0.00 1.82
4848 7451 5.637810 AGAAATCATGCAGCTCACATTTTTG 59.362 36.000 0.00 0.00 0.00 2.44
4852 7455 3.358707 TGCAGCTCACATTTTTGTCTG 57.641 42.857 0.00 0.00 0.00 3.51
4869 7472 3.327757 TGTCTGGTCTGATTAACAGCCTT 59.672 43.478 0.00 0.00 45.38 4.35
4931 7534 8.443953 AAATTATCAAGGTGATTCTACTGCTC 57.556 34.615 0.00 0.00 38.26 4.26
4935 7538 6.544928 TCAAGGTGATTCTACTGCTCAATA 57.455 37.500 0.00 0.00 0.00 1.90
4939 7542 6.893583 AGGTGATTCTACTGCTCAATATTGT 58.106 36.000 14.97 0.00 0.00 2.71
4940 7543 6.989169 AGGTGATTCTACTGCTCAATATTGTC 59.011 38.462 14.97 8.96 0.00 3.18
4965 7569 5.858381 TCTATTCATAGTGTTCAGGCCATC 58.142 41.667 5.01 0.00 0.00 3.51
4970 7574 4.411869 TCATAGTGTTCAGGCCATCCATTA 59.588 41.667 5.01 0.00 33.74 1.90
4971 7575 3.737559 AGTGTTCAGGCCATCCATTAA 57.262 42.857 5.01 0.00 33.74 1.40
5006 7614 0.111061 TGTTGCAGATTCTGGGCACT 59.889 50.000 15.28 0.00 37.26 4.40
5048 7656 3.220507 TGTATGAACCCGAACTACACG 57.779 47.619 0.00 0.00 0.00 4.49
5097 7705 3.329386 CATCCATGGCATAAGGTACGAG 58.671 50.000 6.96 0.00 0.00 4.18
5105 7713 1.614413 CATAAGGTACGAGGGCTCTCC 59.386 57.143 8.35 0.00 36.70 3.71
5115 7723 0.618968 AGGGCTCTCCGAATGGAACT 60.619 55.000 0.00 0.00 45.87 3.01
5147 7766 6.546428 TCCAAGTTAAAATTTTGGTGGTGA 57.454 33.333 13.76 1.49 41.61 4.02
5148 7767 7.130681 TCCAAGTTAAAATTTTGGTGGTGAT 57.869 32.000 13.76 0.00 41.61 3.06
5149 7768 7.569240 TCCAAGTTAAAATTTTGGTGGTGATT 58.431 30.769 13.76 0.00 41.61 2.57
5150 7769 8.049721 TCCAAGTTAAAATTTTGGTGGTGATTT 58.950 29.630 13.76 0.00 41.61 2.17
5162 7781 4.881273 TGGTGGTGATTTATATGTGACAGC 59.119 41.667 0.00 0.00 0.00 4.40
5167 7786 6.883756 TGGTGATTTATATGTGACAGCTTTCA 59.116 34.615 0.00 0.00 0.00 2.69
5189 7808 2.254546 TAACTGCAGGTGTTCCACAG 57.745 50.000 16.44 0.00 42.27 3.66
5190 7809 0.546122 AACTGCAGGTGTTCCACAGA 59.454 50.000 19.93 0.00 40.39 3.41
5199 7818 0.948623 TGTTCCACAGACGAATGCCG 60.949 55.000 0.00 0.00 45.44 5.69
5281 7900 1.317431 TGTGAGCGCATACGTACCCT 61.317 55.000 11.47 0.00 42.83 4.34
5290 7909 2.677037 GCATACGTACCCTGCAGTTTCT 60.677 50.000 13.81 0.00 35.96 2.52
5291 7910 3.596214 CATACGTACCCTGCAGTTTCTT 58.404 45.455 13.81 0.00 0.00 2.52
5293 7912 2.490991 ACGTACCCTGCAGTTTCTTTC 58.509 47.619 13.81 0.00 0.00 2.62
5298 7917 4.098914 ACCCTGCAGTTTCTTTCACATA 57.901 40.909 13.81 0.00 0.00 2.29
5301 7920 4.278170 CCCTGCAGTTTCTTTCACATACAA 59.722 41.667 13.81 0.00 0.00 2.41
5311 7930 8.921670 GTTTCTTTCACATACAAAACACAGTTT 58.078 29.630 0.00 0.00 0.00 2.66
5312 7931 8.682128 TTCTTTCACATACAAAACACAGTTTC 57.318 30.769 0.00 0.00 0.00 2.78
5313 7932 7.821652 TCTTTCACATACAAAACACAGTTTCA 58.178 30.769 0.00 0.00 0.00 2.69
5314 7933 7.753132 TCTTTCACATACAAAACACAGTTTCAC 59.247 33.333 0.00 0.00 0.00 3.18
5316 7935 7.094508 TCACATACAAAACACAGTTTCACAT 57.905 32.000 0.00 0.00 0.00 3.21
5317 7936 6.971756 TCACATACAAAACACAGTTTCACATG 59.028 34.615 0.00 0.00 0.00 3.21
5318 7937 6.751425 CACATACAAAACACAGTTTCACATGT 59.249 34.615 0.00 0.00 0.00 3.21
5319 7938 6.972328 ACATACAAAACACAGTTTCACATGTC 59.028 34.615 0.00 0.00 0.00 3.06
5320 7939 5.643379 ACAAAACACAGTTTCACATGTCT 57.357 34.783 0.00 0.00 0.00 3.41
5321 7940 6.751514 ACAAAACACAGTTTCACATGTCTA 57.248 33.333 0.00 0.00 0.00 2.59
5322 7941 7.151999 ACAAAACACAGTTTCACATGTCTAA 57.848 32.000 0.00 0.00 0.00 2.10
5323 7942 7.598278 ACAAAACACAGTTTCACATGTCTAAA 58.402 30.769 0.00 0.00 0.00 1.85
5324 7943 8.250332 ACAAAACACAGTTTCACATGTCTAAAT 58.750 29.630 0.00 0.00 0.00 1.40
5325 7944 8.745837 CAAAACACAGTTTCACATGTCTAAATC 58.254 33.333 0.00 0.00 0.00 2.17
5326 7945 7.807977 AACACAGTTTCACATGTCTAAATCT 57.192 32.000 0.00 0.00 0.00 2.40
5327 7946 7.426929 ACACAGTTTCACATGTCTAAATCTC 57.573 36.000 0.00 0.00 0.00 2.75
5470 8089 1.004918 GCCTCACGGTAAGCACACT 60.005 57.895 0.00 0.00 0.00 3.55
5474 8093 0.318360 TCACGGTAAGCACACTGACG 60.318 55.000 3.75 0.00 0.00 4.35
5509 8128 3.938334 CCACATTACACCAACATCGATCA 59.062 43.478 0.00 0.00 0.00 2.92
5528 8153 4.610605 TCAATCACCGAGTTTCTTACCA 57.389 40.909 0.00 0.00 0.00 3.25
5638 8263 2.426414 CCTTCCTAGGGCTGTAGGATCA 60.426 54.545 9.46 3.42 46.57 2.92
5666 8296 0.179163 GGCTACATGTGCGAAAAGGC 60.179 55.000 9.11 5.16 0.00 4.35
5881 8512 6.676950 TGTGTACGCTTTGATTGATGAATTT 58.323 32.000 8.10 0.00 0.00 1.82
5882 8513 7.144661 TGTGTACGCTTTGATTGATGAATTTT 58.855 30.769 8.10 0.00 0.00 1.82
6018 8650 2.094575 TCGTCAAATTTAATCGGCGTGG 59.905 45.455 6.85 0.00 0.00 4.94
6050 8682 4.725790 AAAAATTACTGCAGATGAGGCC 57.274 40.909 23.35 0.00 0.00 5.19
6051 8683 3.370840 AAATTACTGCAGATGAGGCCA 57.629 42.857 23.35 0.00 0.00 5.36
6066 8698 1.509961 AGGCCACCATATACTCCCTCT 59.490 52.381 5.01 0.00 0.00 3.69
6069 8701 3.507411 GCCACCATATACTCCCTCTGTA 58.493 50.000 0.00 0.00 0.00 2.74
6085 8846 5.643777 CCCTCTGTACTGAATTACTTGTTGG 59.356 44.000 3.89 0.00 0.00 3.77
6305 10293 4.065088 GCGCCAATAATAGACCTCAATGA 58.935 43.478 0.00 0.00 0.00 2.57
6306 10294 4.515191 GCGCCAATAATAGACCTCAATGAA 59.485 41.667 0.00 0.00 0.00 2.57
6307 10295 5.560953 GCGCCAATAATAGACCTCAATGAAC 60.561 44.000 0.00 0.00 0.00 3.18
6309 10297 6.064717 GCCAATAATAGACCTCAATGAACCT 58.935 40.000 0.00 0.00 0.00 3.50
6310 10298 6.547510 GCCAATAATAGACCTCAATGAACCTT 59.452 38.462 0.00 0.00 0.00 3.50
6311 10299 7.469181 GCCAATAATAGACCTCAATGAACCTTG 60.469 40.741 0.00 0.00 0.00 3.61
6312 10300 7.420800 CAATAATAGACCTCAATGAACCTTGC 58.579 38.462 0.00 0.00 0.00 4.01
6313 10301 4.851639 ATAGACCTCAATGAACCTTGCT 57.148 40.909 0.00 0.00 0.00 3.91
6314 10302 5.957771 ATAGACCTCAATGAACCTTGCTA 57.042 39.130 0.00 0.00 0.00 3.49
6315 10303 4.851639 AGACCTCAATGAACCTTGCTAT 57.148 40.909 0.00 0.00 0.00 2.97
6316 10304 5.957771 AGACCTCAATGAACCTTGCTATA 57.042 39.130 0.00 0.00 0.00 1.31
6317 10305 5.675538 AGACCTCAATGAACCTTGCTATAC 58.324 41.667 0.00 0.00 0.00 1.47
6318 10306 5.189736 AGACCTCAATGAACCTTGCTATACA 59.810 40.000 0.00 0.00 0.00 2.29
6319 10307 6.006275 ACCTCAATGAACCTTGCTATACAT 57.994 37.500 0.00 0.00 0.00 2.29
6320 10308 7.071196 AGACCTCAATGAACCTTGCTATACATA 59.929 37.037 0.00 0.00 0.00 2.29
6321 10309 6.992715 ACCTCAATGAACCTTGCTATACATAC 59.007 38.462 0.00 0.00 0.00 2.39
6322 10310 6.146184 CCTCAATGAACCTTGCTATACATACG 59.854 42.308 0.00 0.00 0.00 3.06
6323 10311 6.811954 TCAATGAACCTTGCTATACATACGA 58.188 36.000 0.00 0.00 0.00 3.43
6324 10312 7.441836 TCAATGAACCTTGCTATACATACGAT 58.558 34.615 0.00 0.00 0.00 3.73
6325 10313 7.384932 TCAATGAACCTTGCTATACATACGATG 59.615 37.037 0.00 0.00 0.00 3.84
6326 10314 6.399639 TGAACCTTGCTATACATACGATGA 57.600 37.500 0.00 0.00 0.00 2.92
6327 10315 6.811954 TGAACCTTGCTATACATACGATGAA 58.188 36.000 0.00 0.00 0.00 2.57
6328 10316 7.441836 TGAACCTTGCTATACATACGATGAAT 58.558 34.615 0.00 0.00 0.00 2.57
6329 10317 7.931407 TGAACCTTGCTATACATACGATGAATT 59.069 33.333 0.00 0.00 0.00 2.17
6330 10318 8.677148 AACCTTGCTATACATACGATGAATTT 57.323 30.769 0.00 0.00 0.00 1.82
6331 10319 8.311650 ACCTTGCTATACATACGATGAATTTC 57.688 34.615 0.00 0.00 0.00 2.17
6332 10320 8.150945 ACCTTGCTATACATACGATGAATTTCT 58.849 33.333 0.00 0.00 0.00 2.52
6333 10321 8.438513 CCTTGCTATACATACGATGAATTTCTG 58.561 37.037 0.00 0.00 0.00 3.02
6334 10322 8.887036 TTGCTATACATACGATGAATTTCTGT 57.113 30.769 0.00 0.00 0.00 3.41
6335 10323 8.520835 TGCTATACATACGATGAATTTCTGTC 57.479 34.615 0.00 0.00 0.00 3.51
6336 10324 7.598869 TGCTATACATACGATGAATTTCTGTCC 59.401 37.037 0.00 0.00 0.00 4.02
6337 10325 7.598869 GCTATACATACGATGAATTTCTGTCCA 59.401 37.037 0.00 0.00 0.00 4.02
6338 10326 9.476202 CTATACATACGATGAATTTCTGTCCAA 57.524 33.333 0.00 0.00 0.00 3.53
6339 10327 6.422776 ACATACGATGAATTTCTGTCCAAC 57.577 37.500 0.00 0.00 0.00 3.77
6340 10328 5.937540 ACATACGATGAATTTCTGTCCAACA 59.062 36.000 0.00 0.00 0.00 3.33
6341 10329 4.749245 ACGATGAATTTCTGTCCAACAC 57.251 40.909 0.00 0.00 0.00 3.32
6342 10330 4.389374 ACGATGAATTTCTGTCCAACACT 58.611 39.130 0.00 0.00 0.00 3.55
6343 10331 4.821805 ACGATGAATTTCTGTCCAACACTT 59.178 37.500 0.00 0.00 0.00 3.16
6344 10332 5.995282 ACGATGAATTTCTGTCCAACACTTA 59.005 36.000 0.00 0.00 0.00 2.24
6345 10333 6.147821 ACGATGAATTTCTGTCCAACACTTAG 59.852 38.462 0.00 0.00 0.00 2.18
6346 10334 6.147821 CGATGAATTTCTGTCCAACACTTAGT 59.852 38.462 0.00 0.00 0.00 2.24
6347 10335 7.330946 CGATGAATTTCTGTCCAACACTTAGTA 59.669 37.037 0.00 0.00 0.00 1.82
6348 10336 7.724305 TGAATTTCTGTCCAACACTTAGTAC 57.276 36.000 0.00 0.00 0.00 2.73
6349 10337 6.422701 TGAATTTCTGTCCAACACTTAGTACG 59.577 38.462 0.00 0.00 0.00 3.67
6350 10338 5.518848 TTTCTGTCCAACACTTAGTACGA 57.481 39.130 0.00 0.00 0.00 3.43
6351 10339 5.717078 TTCTGTCCAACACTTAGTACGAT 57.283 39.130 0.00 0.00 0.00 3.73
6352 10340 5.717078 TCTGTCCAACACTTAGTACGATT 57.283 39.130 0.00 0.00 0.00 3.34
6353 10341 6.822667 TCTGTCCAACACTTAGTACGATTA 57.177 37.500 0.00 0.00 0.00 1.75
6354 10342 7.218228 TCTGTCCAACACTTAGTACGATTAA 57.782 36.000 0.00 0.00 0.00 1.40
6355 10343 7.660112 TCTGTCCAACACTTAGTACGATTAAA 58.340 34.615 0.00 0.00 0.00 1.52
6356 10344 7.811236 TCTGTCCAACACTTAGTACGATTAAAG 59.189 37.037 0.00 0.00 0.00 1.85
6357 10345 7.660112 TGTCCAACACTTAGTACGATTAAAGA 58.340 34.615 0.00 0.00 0.00 2.52
6358 10346 7.596248 TGTCCAACACTTAGTACGATTAAAGAC 59.404 37.037 0.00 0.00 0.00 3.01
6359 10347 7.596248 GTCCAACACTTAGTACGATTAAAGACA 59.404 37.037 0.00 0.00 0.00 3.41
6360 10348 7.811236 TCCAACACTTAGTACGATTAAAGACAG 59.189 37.037 0.00 0.00 0.00 3.51
6361 10349 7.811236 CCAACACTTAGTACGATTAAAGACAGA 59.189 37.037 0.00 0.00 0.00 3.41
6362 10350 9.355215 CAACACTTAGTACGATTAAAGACAGAT 57.645 33.333 0.00 0.00 0.00 2.90
6363 10351 9.570488 AACACTTAGTACGATTAAAGACAGATC 57.430 33.333 0.00 0.00 0.00 2.75
6364 10352 8.737175 ACACTTAGTACGATTAAAGACAGATCA 58.263 33.333 0.00 0.00 0.00 2.92
6365 10353 9.737427 CACTTAGTACGATTAAAGACAGATCAT 57.263 33.333 0.00 0.00 0.00 2.45
6384 10372 4.454678 TCATAGATGATCAGTTTGTGGGC 58.545 43.478 0.09 0.00 0.00 5.36
6385 10373 2.134789 AGATGATCAGTTTGTGGGCC 57.865 50.000 0.09 0.00 0.00 5.80
6386 10374 1.355381 AGATGATCAGTTTGTGGGCCA 59.645 47.619 0.00 0.00 0.00 5.36
6387 10375 2.024655 AGATGATCAGTTTGTGGGCCAT 60.025 45.455 10.70 0.00 0.00 4.40
6388 10376 1.838112 TGATCAGTTTGTGGGCCATC 58.162 50.000 10.70 4.10 0.00 3.51
6389 10377 1.355381 TGATCAGTTTGTGGGCCATCT 59.645 47.619 10.70 3.46 0.00 2.90
6390 10378 1.747355 GATCAGTTTGTGGGCCATCTG 59.253 52.381 10.70 15.84 0.00 2.90
6391 10379 0.251297 TCAGTTTGTGGGCCATCTGG 60.251 55.000 10.70 0.00 38.53 3.86
6392 10380 0.540365 CAGTTTGTGGGCCATCTGGT 60.540 55.000 10.70 0.00 37.57 4.00
6393 10381 0.251341 AGTTTGTGGGCCATCTGGTC 60.251 55.000 10.70 0.00 39.63 4.02
6394 10382 1.303236 TTTGTGGGCCATCTGGTCG 60.303 57.895 10.70 0.00 41.79 4.79
6395 10383 2.063015 TTTGTGGGCCATCTGGTCGT 62.063 55.000 10.70 0.00 41.79 4.34
6396 10384 1.195442 TTGTGGGCCATCTGGTCGTA 61.195 55.000 10.70 0.00 41.79 3.43
6397 10385 1.153429 GTGGGCCATCTGGTCGTAC 60.153 63.158 10.70 0.00 41.79 3.67
6398 10386 1.305802 TGGGCCATCTGGTCGTACT 60.306 57.895 0.00 0.00 41.79 2.73
6399 10387 0.032912 TGGGCCATCTGGTCGTACTA 60.033 55.000 0.00 0.00 41.79 1.82
6400 10388 0.674534 GGGCCATCTGGTCGTACTAG 59.325 60.000 4.39 0.00 41.79 2.57
6401 10389 1.400737 GGCCATCTGGTCGTACTAGT 58.599 55.000 0.00 0.00 37.57 2.57
6402 10390 1.067212 GGCCATCTGGTCGTACTAGTG 59.933 57.143 5.39 0.00 37.57 2.74
6403 10391 1.749634 GCCATCTGGTCGTACTAGTGT 59.250 52.381 5.39 0.00 37.57 3.55
6404 10392 2.223525 GCCATCTGGTCGTACTAGTGTC 60.224 54.545 5.39 0.00 37.57 3.67
6405 10393 2.358267 CCATCTGGTCGTACTAGTGTCC 59.642 54.545 5.39 3.31 0.00 4.02
6406 10394 1.730501 TCTGGTCGTACTAGTGTCCG 58.269 55.000 5.39 5.39 0.00 4.79
6407 10395 1.276138 TCTGGTCGTACTAGTGTCCGA 59.724 52.381 5.39 7.78 32.25 4.55
6409 10397 3.865914 GTCGTACTAGTGTCCGACG 57.134 57.895 20.93 15.63 43.42 5.12
6410 10398 1.350193 GTCGTACTAGTGTCCGACGA 58.650 55.000 20.93 17.29 43.42 4.20
6411 10399 1.726791 GTCGTACTAGTGTCCGACGAA 59.273 52.381 16.99 2.41 43.42 3.85
6412 10400 2.157668 GTCGTACTAGTGTCCGACGAAA 59.842 50.000 16.99 0.00 43.42 3.46
6413 10401 2.805671 TCGTACTAGTGTCCGACGAAAA 59.194 45.455 13.88 0.00 39.40 2.29
6414 10402 3.249799 TCGTACTAGTGTCCGACGAAAAA 59.750 43.478 13.88 0.00 39.40 1.94
6415 10403 3.358993 CGTACTAGTGTCCGACGAAAAAC 59.641 47.826 5.39 0.00 35.59 2.43
6416 10404 3.441496 ACTAGTGTCCGACGAAAAACA 57.559 42.857 0.00 0.00 0.00 2.83
6417 10405 3.784338 ACTAGTGTCCGACGAAAAACAA 58.216 40.909 0.00 0.00 0.00 2.83
6418 10406 4.374399 ACTAGTGTCCGACGAAAAACAAT 58.626 39.130 0.00 0.00 0.00 2.71
6419 10407 3.602390 AGTGTCCGACGAAAAACAATG 57.398 42.857 0.00 0.00 0.00 2.82
6420 10408 2.289547 AGTGTCCGACGAAAAACAATGG 59.710 45.455 0.00 0.00 0.00 3.16
6421 10409 2.032426 GTGTCCGACGAAAAACAATGGT 59.968 45.455 0.00 0.00 0.00 3.55
6422 10410 3.248125 GTGTCCGACGAAAAACAATGGTA 59.752 43.478 0.00 0.00 0.00 3.25
6423 10411 4.066490 TGTCCGACGAAAAACAATGGTAT 58.934 39.130 0.00 0.00 0.00 2.73
6424 10412 4.083749 TGTCCGACGAAAAACAATGGTATG 60.084 41.667 0.00 0.00 0.00 2.39
6425 10413 4.066490 TCCGACGAAAAACAATGGTATGT 58.934 39.130 0.00 0.00 34.24 2.29
6426 10414 5.120519 GTCCGACGAAAAACAATGGTATGTA 59.879 40.000 0.00 0.00 32.02 2.29
6427 10415 5.875910 TCCGACGAAAAACAATGGTATGTAT 59.124 36.000 0.00 0.00 32.02 2.29
6428 10416 7.010367 GTCCGACGAAAAACAATGGTATGTATA 59.990 37.037 0.00 0.00 32.02 1.47
6429 10417 7.223193 TCCGACGAAAAACAATGGTATGTATAG 59.777 37.037 0.00 0.00 32.02 1.31
6430 10418 6.844279 CGACGAAAAACAATGGTATGTATAGC 59.156 38.462 0.00 0.00 32.02 2.97
6431 10419 7.464844 CGACGAAAAACAATGGTATGTATAGCA 60.465 37.037 6.27 6.27 43.86 3.49
6432 10420 8.046294 ACGAAAAACAATGGTATGTATAGCAA 57.954 30.769 7.73 0.00 43.09 3.91
6433 10421 8.181573 ACGAAAAACAATGGTATGTATAGCAAG 58.818 33.333 7.73 6.61 43.09 4.01
6434 10422 7.643764 CGAAAAACAATGGTATGTATAGCAAGG 59.356 37.037 7.73 6.02 43.09 3.61
6435 10423 7.954666 AAAACAATGGTATGTATAGCAAGGT 57.045 32.000 7.73 6.54 43.09 3.50
6436 10424 7.954666 AAACAATGGTATGTATAGCAAGGTT 57.045 32.000 7.73 11.09 43.09 3.50
6437 10425 7.568199 AACAATGGTATGTATAGCAAGGTTC 57.432 36.000 7.73 0.00 43.09 3.62
6438 10426 5.758296 ACAATGGTATGTATAGCAAGGTTCG 59.242 40.000 7.73 0.00 43.09 3.95
6439 10427 5.801531 ATGGTATGTATAGCAAGGTTCGA 57.198 39.130 7.73 0.00 43.09 3.71
6440 10428 4.940463 TGGTATGTATAGCAAGGTTCGAC 58.060 43.478 1.57 0.00 37.77 4.20
6441 10429 4.202182 TGGTATGTATAGCAAGGTTCGACC 60.202 45.833 1.57 0.00 37.77 4.79
6470 10458 9.669887 AATTGCTTATGATTTTGCCAAAAGATA 57.330 25.926 8.75 4.86 33.22 1.98
6567 10556 5.008613 TGCAGGTGTTTGAAGTTCAGTTATC 59.991 40.000 5.56 0.00 0.00 1.75
6568 10557 5.562890 GCAGGTGTTTGAAGTTCAGTTATCC 60.563 44.000 5.56 6.83 0.00 2.59
6569 10558 5.530915 CAGGTGTTTGAAGTTCAGTTATCCA 59.469 40.000 5.56 0.00 0.00 3.41
6570 10559 5.531287 AGGTGTTTGAAGTTCAGTTATCCAC 59.469 40.000 5.56 7.61 0.00 4.02
6571 10560 5.531287 GGTGTTTGAAGTTCAGTTATCCACT 59.469 40.000 5.56 0.00 35.35 4.00
6572 10561 6.293462 GGTGTTTGAAGTTCAGTTATCCACTC 60.293 42.308 5.56 0.00 30.92 3.51
6573 10562 5.465390 TGTTTGAAGTTCAGTTATCCACTCG 59.535 40.000 5.56 0.00 30.92 4.18
6574 10563 4.866508 TGAAGTTCAGTTATCCACTCGT 57.133 40.909 0.08 0.00 30.92 4.18
6575 10564 5.209818 TGAAGTTCAGTTATCCACTCGTT 57.790 39.130 0.08 0.00 30.92 3.85
6576 10565 5.607477 TGAAGTTCAGTTATCCACTCGTTT 58.393 37.500 0.08 0.00 30.92 3.60
6577 10566 5.694910 TGAAGTTCAGTTATCCACTCGTTTC 59.305 40.000 0.08 0.00 30.92 2.78
6578 10567 4.235360 AGTTCAGTTATCCACTCGTTTCG 58.765 43.478 0.00 0.00 30.92 3.46
6579 10568 4.022589 AGTTCAGTTATCCACTCGTTTCGA 60.023 41.667 0.00 0.00 30.92 3.71
6580 10569 4.508461 TCAGTTATCCACTCGTTTCGAA 57.492 40.909 0.00 0.00 34.74 3.71
6581 10570 4.873817 TCAGTTATCCACTCGTTTCGAAA 58.126 39.130 6.47 6.47 34.74 3.46
6582 10571 5.291178 TCAGTTATCCACTCGTTTCGAAAA 58.709 37.500 13.10 0.00 34.74 2.29
6583 10572 5.754406 TCAGTTATCCACTCGTTTCGAAAAA 59.246 36.000 13.10 3.08 34.74 1.94
6609 10632 1.663379 CTGATCCTACGGCCACGACA 61.663 60.000 2.24 0.00 44.60 4.35
6665 10688 5.872617 CCGATTCATCTTGTAACAGTACCAA 59.127 40.000 0.00 0.00 0.00 3.67
6757 11060 9.698309 AACAATAGTATACTCATGCATACACTC 57.302 33.333 9.12 0.00 31.33 3.51
6758 11061 8.023706 ACAATAGTATACTCATGCATACACTCG 58.976 37.037 9.12 0.00 31.33 4.18
6849 11167 8.684386 TGTTGTTCCTTTGTGAGTGATTAATA 57.316 30.769 0.00 0.00 0.00 0.98
6855 11173 9.739276 TTCCTTTGTGAGTGATTAATAATGTCT 57.261 29.630 0.00 0.00 0.00 3.41
6951 11273 7.117241 ACGTACTTGCATCAATATTAATCGG 57.883 36.000 0.00 0.00 0.00 4.18
6964 11286 3.943671 TTAATCGGTTGATGTGGGGAT 57.056 42.857 0.00 0.00 34.24 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 5.042463 TCCATAACAAATCGCTAATCCCA 57.958 39.130 0.00 0.00 0.00 4.37
205 958 8.811378 CAGAAATCGCATCATATACGTGATATT 58.189 33.333 0.00 0.00 36.72 1.28
252 1005 6.916387 GGTGCTGATTCAATTCAATCATGTAG 59.084 38.462 5.13 0.00 41.06 2.74
415 1188 7.836842 ACATGTGTGTGTATGTGTATCTCTAA 58.163 34.615 0.00 0.00 37.14 2.10
434 1207 4.380867 GGTGAAATGGGAAGCTTACATGTG 60.381 45.833 11.69 0.00 0.00 3.21
436 1209 3.763360 TGGTGAAATGGGAAGCTTACATG 59.237 43.478 11.69 0.00 0.00 3.21
484 1257 2.668850 TGAGAAGGGAAGGGGAGAAT 57.331 50.000 0.00 0.00 0.00 2.40
515 1288 3.160269 AGAAAAACCAGAGATGCAAGGG 58.840 45.455 0.00 0.00 0.00 3.95
526 1301 1.524008 GCCGGTGGGAGAAAAACCAG 61.524 60.000 1.90 0.00 37.45 4.00
665 1448 4.640201 AGATTTTGTATGGAATGGTCGTGG 59.360 41.667 0.00 0.00 0.00 4.94
668 1451 9.632807 TTTAAAAGATTTTGTATGGAATGGTCG 57.367 29.630 0.82 0.00 0.00 4.79
700 1483 9.222916 CGTCTATTAGTACATTCTAGTGTGTTG 57.777 37.037 7.80 0.00 33.62 3.33
729 1512 6.686484 TCTGCTTAGATTAGCCCATGATTA 57.314 37.500 0.00 0.00 40.49 1.75
736 1519 7.568199 TTAAACATTCTGCTTAGATTAGCCC 57.432 36.000 0.00 0.00 40.49 5.19
747 1530 5.567423 GCAATGAGGGTTTAAACATTCTGCT 60.567 40.000 19.57 4.07 31.85 4.24
748 1531 4.627035 GCAATGAGGGTTTAAACATTCTGC 59.373 41.667 19.57 16.24 31.85 4.26
749 1532 5.782047 TGCAATGAGGGTTTAAACATTCTG 58.218 37.500 19.57 11.60 31.85 3.02
769 1830 6.356556 ACTAGATAATTGCCTATGTGTTGCA 58.643 36.000 0.00 0.00 0.00 4.08
797 1858 1.268625 CTTGTGGCCGGTTTTCCTAAC 59.731 52.381 1.90 0.00 37.95 2.34
801 1862 3.047735 CCTTGTGGCCGGTTTTCC 58.952 61.111 1.90 0.00 0.00 3.13
874 1935 2.581354 CAAGAGCTAGCTGGGCGT 59.419 61.111 24.99 2.87 34.52 5.68
880 1941 1.493861 TCTGATGCCAAGAGCTAGCT 58.506 50.000 19.45 19.45 44.23 3.32
881 1942 2.211806 CTTCTGATGCCAAGAGCTAGC 58.788 52.381 6.62 6.62 44.23 3.42
882 1943 2.485124 CCCTTCTGATGCCAAGAGCTAG 60.485 54.545 0.00 0.00 44.23 3.42
883 1944 1.487976 CCCTTCTGATGCCAAGAGCTA 59.512 52.381 0.00 0.00 44.23 3.32
1156 3223 2.506881 GCGTACGTACCGGGTTGG 60.507 66.667 19.67 5.24 46.41 3.77
1343 3410 0.036388 TCAGGAACACGCTCATTCCC 60.036 55.000 6.21 0.00 44.78 3.97
1347 3414 1.446792 CGCTCAGGAACACGCTCAT 60.447 57.895 0.00 0.00 0.00 2.90
1348 3415 2.049156 CGCTCAGGAACACGCTCA 60.049 61.111 0.00 0.00 0.00 4.26
1360 3430 1.081892 GAGCTTGAATTGAGCGCTCA 58.918 50.000 35.30 35.30 44.74 4.26
1446 3517 4.453136 CGTTTTCCTATCGAACTGGGAAAA 59.547 41.667 19.58 19.58 46.96 2.29
1483 3557 2.160205 GTTACCAAAAGAGCAGGGGAC 58.840 52.381 0.00 0.00 0.00 4.46
1515 3589 2.432510 ACGCCCTCCTCTAATTTCAGAG 59.567 50.000 0.00 0.00 41.54 3.35
1602 3676 1.737793 CCCCTCATGTAGAAACGCAAC 59.262 52.381 0.00 0.00 0.00 4.17
1603 3677 1.626321 TCCCCTCATGTAGAAACGCAA 59.374 47.619 0.00 0.00 0.00 4.85
1604 3678 1.271856 TCCCCTCATGTAGAAACGCA 58.728 50.000 0.00 0.00 0.00 5.24
1605 3679 2.396590 TTCCCCTCATGTAGAAACGC 57.603 50.000 0.00 0.00 0.00 4.84
1648 3722 4.036518 ACTCAAGGAGCAACAGAGGATAT 58.963 43.478 0.00 0.00 32.04 1.63
1649 3723 3.445008 ACTCAAGGAGCAACAGAGGATA 58.555 45.455 0.00 0.00 32.04 2.59
1994 4160 1.095228 CAATCCGGCCGCACTACAAT 61.095 55.000 22.85 0.53 0.00 2.71
2008 4174 9.744468 AGAACAAAGTAACACAATAAACAATCC 57.256 29.630 0.00 0.00 0.00 3.01
2042 4208 3.558829 CACACAGCTACTTCTGCATATGG 59.441 47.826 4.56 0.00 37.59 2.74
2090 4256 2.023695 AGGGCAATTCATGGACCAAGAT 60.024 45.455 0.00 0.00 0.00 2.40
2107 4273 1.417890 ACATGCAGATACTACCAGGGC 59.582 52.381 0.00 0.00 0.00 5.19
2122 4288 7.031226 AGTGAATGGTTGTATAATGACATGC 57.969 36.000 0.00 0.00 0.00 4.06
2147 4313 3.549827 CCGATGCACAACAAAAGCACTTA 60.550 43.478 0.00 0.00 41.60 2.24
2153 4319 3.566273 TGCCGATGCACAACAAAAG 57.434 47.368 0.00 0.00 44.23 2.27
2188 4354 4.095483 CAGGAGTGCAAAATAACTAGCAGG 59.905 45.833 0.00 0.00 37.72 4.85
2199 4365 1.110442 CAACCACCAGGAGTGCAAAA 58.890 50.000 0.00 0.00 45.83 2.44
2225 4391 5.161358 GCATATCTGACATGAATGGCAATG 58.839 41.667 0.00 2.99 46.90 2.82
2230 4396 2.809696 TGCGCATATCTGACATGAATGG 59.190 45.455 5.66 0.00 0.00 3.16
2231 4397 3.364664 GGTGCGCATATCTGACATGAATG 60.365 47.826 15.91 0.00 0.00 2.67
2232 4398 2.810274 GGTGCGCATATCTGACATGAAT 59.190 45.455 15.91 0.00 0.00 2.57
2254 4420 2.398588 ACGGAAGGCCTATGAATCAGA 58.601 47.619 5.16 0.00 0.00 3.27
2264 4430 0.693049 AATCTGTCAACGGAAGGCCT 59.307 50.000 0.00 0.00 34.49 5.19
2274 4440 4.323417 AGTCGGTATTGCAAATCTGTCAA 58.677 39.130 1.71 0.00 0.00 3.18
2516 4682 2.796593 GCATTGCAAACAGAAAGACCAC 59.203 45.455 1.71 0.00 0.00 4.16
2531 4697 4.260784 CCAGAAAATACGACCTAGCATTGC 60.261 45.833 0.00 0.00 0.00 3.56
2540 4706 7.813645 AGTGTAAATTTCCAGAAAATACGACC 58.186 34.615 0.00 0.00 36.54 4.79
2569 4735 5.088739 CCTGCGACAATGAACAAATTAGAC 58.911 41.667 0.00 0.00 0.00 2.59
2749 4915 3.992643 TGTCTGCCATTCACAAAATTGG 58.007 40.909 0.00 0.00 0.00 3.16
3079 5245 4.450419 AGCACAAGATTCAGAAAGAGTTCG 59.550 41.667 0.00 0.00 38.90 3.95
3160 5326 2.079158 ACATATATCAGTGGCATGCGC 58.921 47.619 12.44 0.00 37.44 6.09
3298 5464 5.163513 GCTATTTGCTTGCAAACAGTATGT 58.836 37.500 22.08 9.73 46.40 2.29
3337 5503 4.753107 TGAAGGAACGGAGTGTATCAAAAC 59.247 41.667 0.00 0.00 45.00 2.43
3346 5512 1.553248 TGGGTATGAAGGAACGGAGTG 59.447 52.381 0.00 0.00 45.00 3.51
3415 5595 1.079956 GGCGCATGCATTGGTTCAA 60.080 52.632 19.57 0.00 45.35 2.69
3475 5655 5.581605 AGGAAAATAATTACAGTGCATGCG 58.418 37.500 14.09 0.76 0.00 4.73
3527 5708 8.568617 AACTACTCCCATGATTCCTTATTACT 57.431 34.615 0.00 0.00 0.00 2.24
3533 5714 7.643123 ACAATAAACTACTCCCATGATTCCTT 58.357 34.615 0.00 0.00 0.00 3.36
3540 5721 6.878317 TCTGAGACAATAAACTACTCCCATG 58.122 40.000 0.00 0.00 0.00 3.66
3541 5722 7.682787 ATCTGAGACAATAAACTACTCCCAT 57.317 36.000 0.00 0.00 0.00 4.00
3621 5803 0.642710 AGTAGGCAGTATCCCACCCT 59.357 55.000 0.00 0.00 0.00 4.34
3622 5804 0.759346 CAGTAGGCAGTATCCCACCC 59.241 60.000 0.00 0.00 0.00 4.61
3704 5887 2.158623 AGAGTTGGACACATTGGAAGCA 60.159 45.455 0.00 0.00 0.00 3.91
3719 5902 6.366332 GTCCACTTGAACTATGTACAGAGTTG 59.634 42.308 34.00 23.45 42.26 3.16
3785 5968 6.427547 TCCGTCCAAAAATACGTCTTACATTT 59.572 34.615 0.00 0.00 37.40 2.32
3789 5972 4.328169 CCTCCGTCCAAAAATACGTCTTAC 59.672 45.833 0.00 0.00 37.40 2.34
3798 5981 7.369551 TCATATACTACCTCCGTCCAAAAAT 57.630 36.000 0.00 0.00 0.00 1.82
3802 5985 6.435277 GGTATTCATATACTACCTCCGTCCAA 59.565 42.308 0.00 0.00 37.39 3.53
3803 5986 5.948162 GGTATTCATATACTACCTCCGTCCA 59.052 44.000 0.00 0.00 37.39 4.02
3806 6016 6.150034 AGGGTATTCATATACTACCTCCGT 57.850 41.667 7.22 0.00 37.39 4.69
3844 6054 1.305633 TGGGCTGGAGTCTGGAGAG 60.306 63.158 0.00 0.00 0.00 3.20
3888 6105 7.584987 CCCTACAAATCTGTCAAAGTAAACAG 58.415 38.462 0.00 0.00 43.41 3.16
3999 6216 6.177610 ACCACTCAAAAAGAAGTTCACAGTA 58.822 36.000 5.50 0.00 0.00 2.74
4000 6217 5.010282 ACCACTCAAAAAGAAGTTCACAGT 58.990 37.500 5.50 0.00 0.00 3.55
4001 6218 5.567138 ACCACTCAAAAAGAAGTTCACAG 57.433 39.130 5.50 0.00 0.00 3.66
4003 6220 5.105917 TGGAACCACTCAAAAAGAAGTTCAC 60.106 40.000 5.50 0.00 39.85 3.18
4004 6221 5.013547 TGGAACCACTCAAAAAGAAGTTCA 58.986 37.500 5.50 0.00 39.85 3.18
4005 6222 5.576447 TGGAACCACTCAAAAAGAAGTTC 57.424 39.130 0.00 0.00 38.60 3.01
4006 6223 6.605594 TGTATGGAACCACTCAAAAAGAAGTT 59.394 34.615 0.00 0.00 0.00 2.66
4007 6224 6.126409 TGTATGGAACCACTCAAAAAGAAGT 58.874 36.000 0.00 0.00 0.00 3.01
4008 6225 6.294176 CCTGTATGGAACCACTCAAAAAGAAG 60.294 42.308 0.00 0.00 38.35 2.85
4009 6226 5.534654 CCTGTATGGAACCACTCAAAAAGAA 59.465 40.000 0.00 0.00 38.35 2.52
4010 6227 5.070001 CCTGTATGGAACCACTCAAAAAGA 58.930 41.667 0.00 0.00 38.35 2.52
4087 6466 7.990886 GTGTGGGATTAGTCAATATAGGACAAA 59.009 37.037 9.39 0.00 37.74 2.83
4115 6494 9.571816 AGTGACTAGTTAACTACTGTTAAGAGT 57.428 33.333 11.38 10.46 45.75 3.24
4160 6687 6.970043 TGAACTTTCAAATGAACGGTAAACAG 59.030 34.615 4.89 0.00 33.55 3.16
4167 6694 4.829064 TCCTGAACTTTCAAATGAACGG 57.171 40.909 4.89 0.61 36.64 4.44
4250 6777 4.092529 GCACATCTGGAGCATATATCGTTG 59.907 45.833 0.00 0.00 0.00 4.10
4251 6778 4.020751 AGCACATCTGGAGCATATATCGTT 60.021 41.667 0.00 0.00 0.00 3.85
4344 6934 5.604231 TCAGATACATCAAGGTGCCTAAGAT 59.396 40.000 0.00 0.00 0.00 2.40
4418 7008 7.390718 ACCTAGTAAATAGAAGCAAAACAGTGG 59.609 37.037 0.00 0.00 32.76 4.00
4537 7137 9.277783 GCTCATATACAACAATATCAAGAAGGT 57.722 33.333 0.00 0.00 0.00 3.50
4558 7158 5.936956 GCTAAACAGCATATCCTAAGCTCAT 59.063 40.000 0.00 0.00 36.26 2.90
4696 7297 3.419834 ACATCCAGCAGACCAGATGTCA 61.420 50.000 0.00 0.00 44.55 3.58
4809 7411 6.319658 GCATGATTTCTCCTTGACCAAGATTA 59.680 38.462 11.06 0.00 40.79 1.75
4834 7437 3.567164 AGACCAGACAAAAATGTGAGCTG 59.433 43.478 0.00 0.00 0.00 4.24
4846 7449 3.674997 GGCTGTTAATCAGACCAGACAA 58.325 45.455 8.63 0.00 45.93 3.18
4869 7472 3.287222 CTCCACTTTCACCAGGAAACAA 58.713 45.455 0.00 0.00 40.51 2.83
4877 7480 3.855255 TGATCAACTCCACTTTCACCA 57.145 42.857 0.00 0.00 0.00 4.17
4935 7538 7.443575 GCCTGAACACTATGAATAGATGACAAT 59.556 37.037 4.34 0.00 34.50 2.71
4939 7542 5.366477 TGGCCTGAACACTATGAATAGATGA 59.634 40.000 3.32 0.00 34.50 2.92
4940 7543 5.614308 TGGCCTGAACACTATGAATAGATG 58.386 41.667 3.32 2.36 34.50 2.90
4952 7555 3.088532 TGTTAATGGATGGCCTGAACAC 58.911 45.455 3.32 0.00 30.81 3.32
4955 7558 4.046286 ACTTGTTAATGGATGGCCTGAA 57.954 40.909 3.32 0.00 34.31 3.02
4957 7560 4.021192 ACAAACTTGTTAATGGATGGCCTG 60.021 41.667 3.32 0.00 38.47 4.85
4958 7561 4.021192 CACAAACTTGTTAATGGATGGCCT 60.021 41.667 3.32 0.00 39.91 5.19
4959 7562 4.021544 TCACAAACTTGTTAATGGATGGCC 60.022 41.667 0.00 0.00 39.91 5.36
4965 7569 6.279882 ACAACCATCACAAACTTGTTAATGG 58.720 36.000 21.52 21.52 46.90 3.16
4970 7574 3.932089 GCAACAACCATCACAAACTTGTT 59.068 39.130 0.00 0.00 39.91 2.83
4971 7575 3.056250 TGCAACAACCATCACAAACTTGT 60.056 39.130 0.00 0.00 43.36 3.16
5006 7614 6.552008 ACATTTGATTTCTTCCCTTGTAGGA 58.448 36.000 0.00 0.00 37.67 2.94
5048 7656 6.878923 CCTTGATTTGGGGAAACTTAAATTCC 59.121 38.462 10.05 10.05 44.61 3.01
5054 7662 3.169908 GGCCTTGATTTGGGGAAACTTA 58.830 45.455 0.00 0.00 0.00 2.24
5097 7705 0.253327 AAGTTCCATTCGGAGAGCCC 59.747 55.000 0.00 0.00 44.10 5.19
5105 7713 2.351738 GGAAGCACCAAAGTTCCATTCG 60.352 50.000 0.00 0.00 39.74 3.34
5133 7741 9.651913 GTCACATATAAATCACCACCAAAATTT 57.348 29.630 0.00 0.00 0.00 1.82
5155 7774 3.312421 TGCAGTTAAGTGAAAGCTGTCAC 59.688 43.478 26.87 26.87 46.90 3.67
5162 7781 4.261197 GGAACACCTGCAGTTAAGTGAAAG 60.261 45.833 22.58 9.90 34.33 2.62
5189 7808 3.093278 CTTCAGGCGGCATTCGTC 58.907 61.111 13.08 0.00 45.07 4.20
5190 7809 3.127533 GCTTCAGGCGGCATTCGT 61.128 61.111 13.08 0.00 41.72 3.85
5199 7818 1.673665 CAGGTCCACTGCTTCAGGC 60.674 63.158 0.00 0.00 40.97 4.85
5220 7839 2.828520 TGAGTACTGAAGAAGCCTGGAG 59.171 50.000 0.00 0.00 0.00 3.86
5269 7888 1.664151 GAAACTGCAGGGTACGTATGC 59.336 52.381 19.93 11.78 40.40 3.14
5281 7900 6.529829 GTGTTTTGTATGTGAAAGAAACTGCA 59.470 34.615 0.00 0.00 0.00 4.41
5290 7909 7.371159 TGTGAAACTGTGTTTTGTATGTGAAA 58.629 30.769 0.00 0.00 38.04 2.69
5291 7910 6.914259 TGTGAAACTGTGTTTTGTATGTGAA 58.086 32.000 0.00 0.00 38.04 3.18
5293 7912 6.751425 ACATGTGAAACTGTGTTTTGTATGTG 59.249 34.615 0.00 6.26 38.04 3.21
5298 7917 5.643379 AGACATGTGAAACTGTGTTTTGT 57.357 34.783 1.15 0.00 36.72 2.83
5301 7920 8.225603 AGATTTAGACATGTGAAACTGTGTTT 57.774 30.769 1.15 0.00 36.72 2.83
5311 7930 7.178451 TGGTGTTAGAGAGATTTAGACATGTGA 59.822 37.037 1.15 0.00 0.00 3.58
5312 7931 7.276658 GTGGTGTTAGAGAGATTTAGACATGTG 59.723 40.741 1.15 0.00 0.00 3.21
5313 7932 7.039011 TGTGGTGTTAGAGAGATTTAGACATGT 60.039 37.037 0.00 0.00 0.00 3.21
5314 7933 7.276658 GTGTGGTGTTAGAGAGATTTAGACATG 59.723 40.741 0.00 0.00 0.00 3.21
5316 7935 6.493802 AGTGTGGTGTTAGAGAGATTTAGACA 59.506 38.462 0.00 0.00 0.00 3.41
5317 7936 6.926313 AGTGTGGTGTTAGAGAGATTTAGAC 58.074 40.000 0.00 0.00 0.00 2.59
5318 7937 7.540474 AAGTGTGGTGTTAGAGAGATTTAGA 57.460 36.000 0.00 0.00 0.00 2.10
5319 7938 6.528423 CGAAGTGTGGTGTTAGAGAGATTTAG 59.472 42.308 0.00 0.00 0.00 1.85
5320 7939 6.208007 TCGAAGTGTGGTGTTAGAGAGATTTA 59.792 38.462 0.00 0.00 0.00 1.40
5321 7940 5.010719 TCGAAGTGTGGTGTTAGAGAGATTT 59.989 40.000 0.00 0.00 0.00 2.17
5322 7941 4.523173 TCGAAGTGTGGTGTTAGAGAGATT 59.477 41.667 0.00 0.00 0.00 2.40
5323 7942 4.079970 TCGAAGTGTGGTGTTAGAGAGAT 58.920 43.478 0.00 0.00 0.00 2.75
5324 7943 3.483421 TCGAAGTGTGGTGTTAGAGAGA 58.517 45.455 0.00 0.00 0.00 3.10
5325 7944 3.917329 TCGAAGTGTGGTGTTAGAGAG 57.083 47.619 0.00 0.00 0.00 3.20
5326 7945 3.572682 ACATCGAAGTGTGGTGTTAGAGA 59.427 43.478 0.00 0.00 0.00 3.10
5327 7946 3.914312 ACATCGAAGTGTGGTGTTAGAG 58.086 45.455 0.00 0.00 0.00 2.43
5470 8089 2.432456 GCTGACCGATGTGCGTCA 60.432 61.111 0.00 0.00 38.67 4.35
5474 8093 1.308069 AATGTGGCTGACCGATGTGC 61.308 55.000 0.00 0.00 39.70 4.57
5509 8128 6.001460 TGAAATGGTAAGAAACTCGGTGATT 58.999 36.000 0.00 0.00 0.00 2.57
5528 8153 0.729116 CCGAGCGCAACAGATGAAAT 59.271 50.000 11.47 0.00 0.00 2.17
5666 8296 2.532256 GCTAGCATGGCAGACAGCG 61.532 63.158 10.63 0.00 44.73 5.18
5813 8444 3.136763 TCACTTACTCAGTCGTTCTCGT 58.863 45.455 0.00 0.00 38.33 4.18
5814 8445 3.425094 CCTCACTTACTCAGTCGTTCTCG 60.425 52.174 0.00 0.00 30.92 4.04
5815 8446 3.752222 TCCTCACTTACTCAGTCGTTCTC 59.248 47.826 0.00 0.00 30.92 2.87
5881 8512 2.857483 CACCACCACCATCTACAACAA 58.143 47.619 0.00 0.00 0.00 2.83
5882 8513 1.544537 GCACCACCACCATCTACAACA 60.545 52.381 0.00 0.00 0.00 3.33
6050 8682 5.386060 TCAGTACAGAGGGAGTATATGGTG 58.614 45.833 0.00 0.00 0.00 4.17
6051 8683 5.664815 TCAGTACAGAGGGAGTATATGGT 57.335 43.478 0.00 0.00 0.00 3.55
6066 8698 8.783093 CATTTCTCCAACAAGTAATTCAGTACA 58.217 33.333 0.00 0.00 0.00 2.90
6069 8701 7.004086 TCCATTTCTCCAACAAGTAATTCAGT 58.996 34.615 0.00 0.00 0.00 3.41
6146 8907 9.959749 GTATGTTCCAAGAAAATTACTTGTCAA 57.040 29.630 17.84 10.91 41.88 3.18
6305 10293 8.677148 AAATTCATCGTATGTATAGCAAGGTT 57.323 30.769 0.00 0.00 0.00 3.50
6306 10294 8.150945 AGAAATTCATCGTATGTATAGCAAGGT 58.849 33.333 0.00 0.00 0.00 3.50
6307 10295 8.438513 CAGAAATTCATCGTATGTATAGCAAGG 58.561 37.037 0.00 0.00 0.00 3.61
6309 10297 8.887036 ACAGAAATTCATCGTATGTATAGCAA 57.113 30.769 0.00 0.00 0.00 3.91
6310 10298 7.598869 GGACAGAAATTCATCGTATGTATAGCA 59.401 37.037 0.00 0.00 0.00 3.49
6311 10299 7.598869 TGGACAGAAATTCATCGTATGTATAGC 59.401 37.037 0.00 0.00 0.00 2.97
6312 10300 9.476202 TTGGACAGAAATTCATCGTATGTATAG 57.524 33.333 0.00 0.00 0.00 1.31
6313 10301 9.256477 GTTGGACAGAAATTCATCGTATGTATA 57.744 33.333 0.00 0.00 0.00 1.47
6314 10302 7.768582 TGTTGGACAGAAATTCATCGTATGTAT 59.231 33.333 0.00 0.00 0.00 2.29
6315 10303 7.064134 GTGTTGGACAGAAATTCATCGTATGTA 59.936 37.037 0.00 0.00 0.00 2.29
6316 10304 5.937540 TGTTGGACAGAAATTCATCGTATGT 59.062 36.000 0.00 0.00 0.00 2.29
6317 10305 6.092670 AGTGTTGGACAGAAATTCATCGTATG 59.907 38.462 0.00 0.00 0.00 2.39
6318 10306 6.173339 AGTGTTGGACAGAAATTCATCGTAT 58.827 36.000 0.00 0.00 0.00 3.06
6319 10307 5.547465 AGTGTTGGACAGAAATTCATCGTA 58.453 37.500 0.00 0.00 0.00 3.43
6320 10308 4.389374 AGTGTTGGACAGAAATTCATCGT 58.611 39.130 0.00 0.00 0.00 3.73
6321 10309 5.362556 AAGTGTTGGACAGAAATTCATCG 57.637 39.130 0.00 0.00 0.00 3.84
6322 10310 7.440523 ACTAAGTGTTGGACAGAAATTCATC 57.559 36.000 0.00 0.00 0.00 2.92
6323 10311 7.117812 CGTACTAAGTGTTGGACAGAAATTCAT 59.882 37.037 0.00 0.00 0.00 2.57
6324 10312 6.422701 CGTACTAAGTGTTGGACAGAAATTCA 59.577 38.462 0.00 0.00 0.00 2.57
6325 10313 6.643770 TCGTACTAAGTGTTGGACAGAAATTC 59.356 38.462 0.00 0.00 0.00 2.17
6326 10314 6.518493 TCGTACTAAGTGTTGGACAGAAATT 58.482 36.000 0.00 0.00 0.00 1.82
6327 10315 6.092955 TCGTACTAAGTGTTGGACAGAAAT 57.907 37.500 0.00 0.00 0.00 2.17
6328 10316 5.518848 TCGTACTAAGTGTTGGACAGAAA 57.481 39.130 0.00 0.00 0.00 2.52
6329 10317 5.717078 ATCGTACTAAGTGTTGGACAGAA 57.283 39.130 0.00 0.00 0.00 3.02
6330 10318 5.717078 AATCGTACTAAGTGTTGGACAGA 57.283 39.130 0.00 0.00 0.00 3.41
6331 10319 7.811236 TCTTTAATCGTACTAAGTGTTGGACAG 59.189 37.037 0.00 0.00 0.00 3.51
6332 10320 7.596248 GTCTTTAATCGTACTAAGTGTTGGACA 59.404 37.037 0.00 0.00 0.00 4.02
6333 10321 7.596248 TGTCTTTAATCGTACTAAGTGTTGGAC 59.404 37.037 0.00 0.00 0.00 4.02
6334 10322 7.660112 TGTCTTTAATCGTACTAAGTGTTGGA 58.340 34.615 0.00 0.00 0.00 3.53
6335 10323 7.811236 TCTGTCTTTAATCGTACTAAGTGTTGG 59.189 37.037 0.00 0.00 0.00 3.77
6336 10324 8.738199 TCTGTCTTTAATCGTACTAAGTGTTG 57.262 34.615 0.00 0.00 0.00 3.33
6337 10325 9.570488 GATCTGTCTTTAATCGTACTAAGTGTT 57.430 33.333 0.00 0.00 0.00 3.32
6338 10326 8.737175 TGATCTGTCTTTAATCGTACTAAGTGT 58.263 33.333 0.00 0.00 0.00 3.55
6339 10327 9.737427 ATGATCTGTCTTTAATCGTACTAAGTG 57.263 33.333 0.00 0.00 0.00 3.16
6362 10350 4.454678 GCCCACAAACTGATCATCTATGA 58.545 43.478 0.00 0.00 41.70 2.15
6363 10351 3.567164 GGCCCACAAACTGATCATCTATG 59.433 47.826 0.00 0.00 0.00 2.23
6364 10352 3.202818 TGGCCCACAAACTGATCATCTAT 59.797 43.478 0.00 0.00 0.00 1.98
6365 10353 2.575735 TGGCCCACAAACTGATCATCTA 59.424 45.455 0.00 0.00 0.00 1.98
6366 10354 1.355381 TGGCCCACAAACTGATCATCT 59.645 47.619 0.00 0.00 0.00 2.90
6367 10355 1.838112 TGGCCCACAAACTGATCATC 58.162 50.000 0.00 0.00 0.00 2.92
6368 10356 2.024655 AGATGGCCCACAAACTGATCAT 60.025 45.455 0.00 0.00 0.00 2.45
6369 10357 1.355381 AGATGGCCCACAAACTGATCA 59.645 47.619 0.00 0.00 0.00 2.92
6370 10358 1.747355 CAGATGGCCCACAAACTGATC 59.253 52.381 0.00 0.00 38.76 2.92
6371 10359 1.617804 CCAGATGGCCCACAAACTGAT 60.618 52.381 0.00 0.00 38.76 2.90
6372 10360 0.251297 CCAGATGGCCCACAAACTGA 60.251 55.000 0.00 0.00 38.76 3.41
6373 10361 0.540365 ACCAGATGGCCCACAAACTG 60.540 55.000 0.00 0.00 39.32 3.16
6374 10362 0.251341 GACCAGATGGCCCACAAACT 60.251 55.000 0.00 0.00 39.32 2.66
6375 10363 1.586154 CGACCAGATGGCCCACAAAC 61.586 60.000 0.00 0.00 39.32 2.93
6376 10364 1.303236 CGACCAGATGGCCCACAAA 60.303 57.895 0.00 0.00 39.32 2.83
6377 10365 1.195442 TACGACCAGATGGCCCACAA 61.195 55.000 0.00 0.00 39.32 3.33
6378 10366 1.610967 TACGACCAGATGGCCCACA 60.611 57.895 0.00 0.00 39.32 4.17
6379 10367 1.153429 GTACGACCAGATGGCCCAC 60.153 63.158 0.00 0.00 39.32 4.61
6380 10368 0.032912 TAGTACGACCAGATGGCCCA 60.033 55.000 0.00 0.00 39.32 5.36
6381 10369 0.674534 CTAGTACGACCAGATGGCCC 59.325 60.000 0.00 0.00 39.32 5.80
6382 10370 1.067212 CACTAGTACGACCAGATGGCC 59.933 57.143 0.00 0.00 39.32 5.36
6383 10371 1.749634 ACACTAGTACGACCAGATGGC 59.250 52.381 0.00 0.00 39.32 4.40
6384 10372 2.358267 GGACACTAGTACGACCAGATGG 59.642 54.545 0.00 0.00 42.17 3.51
6385 10373 3.694535 GGACACTAGTACGACCAGATG 57.305 52.381 0.00 0.00 0.00 2.90
6394 10382 4.290155 TGTTTTTCGTCGGACACTAGTAC 58.710 43.478 9.10 0.00 0.00 2.73
6395 10383 4.566545 TGTTTTTCGTCGGACACTAGTA 57.433 40.909 9.10 0.00 0.00 1.82
6396 10384 3.441496 TGTTTTTCGTCGGACACTAGT 57.559 42.857 9.10 0.00 0.00 2.57
6397 10385 4.377022 CCATTGTTTTTCGTCGGACACTAG 60.377 45.833 9.10 0.00 0.00 2.57
6398 10386 3.495377 CCATTGTTTTTCGTCGGACACTA 59.505 43.478 9.10 0.00 0.00 2.74
6399 10387 2.289547 CCATTGTTTTTCGTCGGACACT 59.710 45.455 9.10 0.00 0.00 3.55
6400 10388 2.032426 ACCATTGTTTTTCGTCGGACAC 59.968 45.455 9.10 0.00 0.00 3.67
6401 10389 2.290464 ACCATTGTTTTTCGTCGGACA 58.710 42.857 9.10 0.00 0.00 4.02
6402 10390 4.083696 ACATACCATTGTTTTTCGTCGGAC 60.084 41.667 0.00 0.00 0.00 4.79
6403 10391 4.066490 ACATACCATTGTTTTTCGTCGGA 58.934 39.130 0.00 0.00 0.00 4.55
6404 10392 4.413495 ACATACCATTGTTTTTCGTCGG 57.587 40.909 0.00 0.00 0.00 4.79
6405 10393 6.844279 GCTATACATACCATTGTTTTTCGTCG 59.156 38.462 0.00 0.00 0.00 5.12
6406 10394 7.690228 TGCTATACATACCATTGTTTTTCGTC 58.310 34.615 0.00 0.00 0.00 4.20
6407 10395 7.618502 TGCTATACATACCATTGTTTTTCGT 57.381 32.000 0.00 0.00 0.00 3.85
6408 10396 7.643764 CCTTGCTATACATACCATTGTTTTTCG 59.356 37.037 0.00 0.00 0.00 3.46
6409 10397 8.466798 ACCTTGCTATACATACCATTGTTTTTC 58.533 33.333 0.00 0.00 0.00 2.29
6410 10398 8.361169 ACCTTGCTATACATACCATTGTTTTT 57.639 30.769 0.00 0.00 0.00 1.94
6411 10399 7.954666 ACCTTGCTATACATACCATTGTTTT 57.045 32.000 0.00 0.00 0.00 2.43
6412 10400 7.201696 CGAACCTTGCTATACATACCATTGTTT 60.202 37.037 0.00 0.00 0.00 2.83
6413 10401 6.260050 CGAACCTTGCTATACATACCATTGTT 59.740 38.462 0.00 0.00 0.00 2.83
6414 10402 5.758296 CGAACCTTGCTATACATACCATTGT 59.242 40.000 0.00 0.00 0.00 2.71
6415 10403 5.989168 TCGAACCTTGCTATACATACCATTG 59.011 40.000 0.00 0.00 0.00 2.82
6416 10404 5.989777 GTCGAACCTTGCTATACATACCATT 59.010 40.000 0.00 0.00 0.00 3.16
6417 10405 5.510861 GGTCGAACCTTGCTATACATACCAT 60.511 44.000 0.00 0.00 34.73 3.55
6418 10406 4.202182 GGTCGAACCTTGCTATACATACCA 60.202 45.833 0.00 0.00 34.73 3.25
6419 10407 4.304939 GGTCGAACCTTGCTATACATACC 58.695 47.826 0.00 0.00 34.73 2.73
6433 10421 3.938963 TCATAAGCAATTGAGGTCGAACC 59.061 43.478 10.34 0.00 38.99 3.62
6434 10422 5.741388 ATCATAAGCAATTGAGGTCGAAC 57.259 39.130 10.34 0.00 0.00 3.95
6435 10423 6.757897 AAATCATAAGCAATTGAGGTCGAA 57.242 33.333 10.34 0.00 0.00 3.71
6436 10424 6.554419 CAAAATCATAAGCAATTGAGGTCGA 58.446 36.000 10.34 0.00 0.00 4.20
6437 10425 5.230726 GCAAAATCATAAGCAATTGAGGTCG 59.769 40.000 10.34 0.00 0.00 4.79
6438 10426 5.521372 GGCAAAATCATAAGCAATTGAGGTC 59.479 40.000 10.34 0.00 0.00 3.85
6439 10427 5.046448 TGGCAAAATCATAAGCAATTGAGGT 60.046 36.000 10.34 0.00 0.00 3.85
6440 10428 5.421277 TGGCAAAATCATAAGCAATTGAGG 58.579 37.500 10.34 0.00 0.00 3.86
6441 10429 6.971527 TTGGCAAAATCATAAGCAATTGAG 57.028 33.333 10.34 0.00 0.00 3.02
6442 10430 7.660617 TCTTTTGGCAAAATCATAAGCAATTGA 59.339 29.630 24.30 11.21 0.00 2.57
6470 10458 5.571285 TCTAGTCATCACTGAACTGTACCT 58.429 41.667 0.00 0.00 33.62 3.08
6609 10632 2.826128 TCTCAGCCGTTGAAGTGAGTAT 59.174 45.455 0.00 0.00 38.09 2.12
6665 10688 4.665483 AGCATTTTATAGCCCTAGGAAGGT 59.335 41.667 11.48 2.25 41.89 3.50
6747 11050 3.813166 TCGAGTATCATCGAGTGTATGCA 59.187 43.478 0.00 0.00 46.20 3.96
6757 11060 4.471373 CAGAGGAACATCGAGTATCATCG 58.529 47.826 0.00 0.00 44.07 3.84
6758 11061 4.022416 AGCAGAGGAACATCGAGTATCATC 60.022 45.833 0.00 0.00 33.17 2.92
6849 11167 3.052869 GGGTCCCAAAAGGGATAGACATT 60.053 47.826 6.52 0.00 40.46 2.71
6855 11173 0.913924 GTCGGGTCCCAAAAGGGATA 59.086 55.000 9.12 0.00 40.46 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.