Multiple sequence alignment - TraesCS5D01G511700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G511700 chr5D 100.000 3745 0 0 1 3745 536239933 536236189 0.000000e+00 6916
1 TraesCS5D01G511700 chr5D 82.969 1327 199 11 1467 2776 536087599 536088915 0.000000e+00 1173
2 TraesCS5D01G511700 chr5D 88.975 771 53 13 672 1434 536086771 536087517 0.000000e+00 924
3 TraesCS5D01G511700 chr5B 92.429 3170 170 32 604 3745 676508394 676505267 0.000000e+00 4460
4 TraesCS5D01G511700 chr4A 93.513 2266 102 17 646 2879 635239863 635237611 0.000000e+00 3328
5 TraesCS5D01G511700 chr4A 82.151 1283 197 14 1487 2755 635725755 635724491 0.000000e+00 1072
6 TraesCS5D01G511700 chr4A 90.260 770 58 10 672 1434 635726602 635725843 0.000000e+00 990
7 TraesCS5D01G511700 chr4A 92.086 695 45 7 3060 3745 635227722 635227029 0.000000e+00 970
8 TraesCS5D01G511700 chr7B 90.780 423 37 2 1 423 104298741 104298321 7.020000e-157 564
9 TraesCS5D01G511700 chr2A 91.220 410 35 1 1 410 11305151 11305559 1.180000e-154 556
10 TraesCS5D01G511700 chr2A 90.670 418 34 4 1 418 66767605 66767193 5.470000e-153 551
11 TraesCS5D01G511700 chr2A 91.304 138 12 0 464 601 115247950 115248087 4.940000e-44 189
12 TraesCS5D01G511700 chr1D 90.843 415 35 3 2 416 431763790 431764201 1.520000e-153 553
13 TraesCS5D01G511700 chr1D 90.000 420 41 1 1 419 463333040 463333459 3.290000e-150 542
14 TraesCS5D01G511700 chr6D 89.786 421 41 2 1 419 253754180 253753760 4.260000e-149 538
15 TraesCS5D01G511700 chr6D 89.688 417 38 3 1 417 464465592 464466003 9.210000e-146 527
16 TraesCS5D01G511700 chr3D 90.299 402 39 0 1 402 562514204 562514605 9.210000e-146 527
17 TraesCS5D01G511700 chr1B 89.474 418 43 1 1 418 57805434 57805018 9.210000e-146 527
18 TraesCS5D01G511700 chr1B 90.845 142 12 1 471 611 520471553 520471412 4.940000e-44 189
19 TraesCS5D01G511700 chr4D 93.939 132 8 0 470 601 36413233 36413364 2.280000e-47 200
20 TraesCS5D01G511700 chr4D 90.780 141 13 0 464 604 203442846 203442706 4.940000e-44 189
21 TraesCS5D01G511700 chr6B 92.593 135 10 0 467 601 508787749 508787615 1.060000e-45 195
22 TraesCS5D01G511700 chr2D 93.130 131 9 0 471 601 62293424 62293294 3.820000e-45 193
23 TraesCS5D01G511700 chr2D 88.742 151 14 3 458 607 525904814 525904962 8.260000e-42 182
24 TraesCS5D01G511700 chr2B 90.066 151 12 2 464 614 742468952 742469099 3.820000e-45 193
25 TraesCS5D01G511700 chr6A 92.537 134 9 1 469 601 198187899 198188032 1.370000e-44 191
26 TraesCS5D01G511700 chr7A 91.304 138 12 0 464 601 308856365 308856502 4.940000e-44 189
27 TraesCS5D01G511700 chr7A 90.780 141 12 1 462 601 342144484 342144344 1.780000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G511700 chr5D 536236189 536239933 3744 True 6916.0 6916 100.0000 1 3745 1 chr5D.!!$R1 3744
1 TraesCS5D01G511700 chr5D 536086771 536088915 2144 False 1048.5 1173 85.9720 672 2776 2 chr5D.!!$F1 2104
2 TraesCS5D01G511700 chr5B 676505267 676508394 3127 True 4460.0 4460 92.4290 604 3745 1 chr5B.!!$R1 3141
3 TraesCS5D01G511700 chr4A 635237611 635239863 2252 True 3328.0 3328 93.5130 646 2879 1 chr4A.!!$R2 2233
4 TraesCS5D01G511700 chr4A 635724491 635726602 2111 True 1031.0 1072 86.2055 672 2755 2 chr4A.!!$R3 2083
5 TraesCS5D01G511700 chr4A 635227029 635227722 693 True 970.0 970 92.0860 3060 3745 1 chr4A.!!$R1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.0 0.84 0.0 43.97 4.40 F
302 303 0.238289 CGGCTCGCTTCAATGTTTGT 59.762 50.0 0.00 0.0 0.00 2.83 F
321 322 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.0 0.00 0.0 0.00 3.85 F
322 323 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.0 0.00 0.0 0.00 2.59 F
325 326 0.311165 CGTCGCTAGGTGGTCTATGG 59.689 60.0 0.00 0.0 0.00 2.74 F
2335 2440 0.392193 CAGAAGCCTCGTGCCATCTT 60.392 55.0 0.00 0.0 42.71 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2265 2.428901 TCCCCTTCCCTTTTGTCTCTT 58.571 47.619 0.0 0.0 0.00 2.85 R
2335 2440 1.556451 TCTTGCTATGAGCTGGCTTCA 59.444 47.619 0.0 0.0 42.97 3.02 R
2343 2448 3.391965 CAGTGATCCTCTTGCTATGAGC 58.608 50.000 0.0 0.0 42.82 4.26 R
2606 2711 1.069159 CCATCGTCGTAGCTAGCGATT 60.069 52.381 19.0 0.0 41.35 3.34 R
2613 2718 2.105128 GCTGCCATCGTCGTAGCT 59.895 61.111 0.0 0.0 0.00 3.32 R
3719 3856 0.106569 TACGAATAGCCGAGTCCCCA 60.107 55.000 0.0 0.0 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.076278 TAGCCCCCGTACCGTTGG 61.076 66.667 0.00 0.00 0.00 3.77
18 19 3.903281 TAGCCCCCGTACCGTTGGT 62.903 63.158 0.00 0.00 40.16 3.67
20 21 3.628982 CCCCCGTACCGTTGGTGT 61.629 66.667 0.00 0.00 36.19 4.16
21 22 2.282039 CCCCCGTACCGTTGGTGTA 61.282 63.158 0.00 0.00 36.19 2.90
22 23 1.616091 CCCCCGTACCGTTGGTGTAT 61.616 60.000 0.00 0.00 36.19 2.29
23 24 0.179103 CCCCGTACCGTTGGTGTATC 60.179 60.000 0.00 0.00 36.19 2.24
24 25 0.819582 CCCGTACCGTTGGTGTATCT 59.180 55.000 0.00 0.00 36.19 1.98
25 26 2.023673 CCCGTACCGTTGGTGTATCTA 58.976 52.381 0.00 0.00 36.19 1.98
26 27 2.033801 CCCGTACCGTTGGTGTATCTAG 59.966 54.545 0.00 0.00 36.19 2.43
27 28 2.542411 CCGTACCGTTGGTGTATCTAGC 60.542 54.545 0.00 0.00 36.19 3.42
28 29 2.097954 CGTACCGTTGGTGTATCTAGCA 59.902 50.000 0.00 0.00 36.19 3.49
29 30 3.243301 CGTACCGTTGGTGTATCTAGCAT 60.243 47.826 0.00 0.00 36.19 3.79
30 31 3.454371 ACCGTTGGTGTATCTAGCATC 57.546 47.619 0.00 0.00 32.98 3.91
31 32 2.223735 ACCGTTGGTGTATCTAGCATCG 60.224 50.000 0.00 0.00 39.57 3.84
32 33 2.223735 CCGTTGGTGTATCTAGCATCGT 60.224 50.000 0.00 0.00 38.73 3.73
33 34 3.043586 CGTTGGTGTATCTAGCATCGTC 58.956 50.000 0.00 0.00 36.84 4.20
34 35 3.043586 GTTGGTGTATCTAGCATCGTCG 58.956 50.000 0.00 0.00 0.00 5.12
35 36 1.607148 TGGTGTATCTAGCATCGTCGG 59.393 52.381 0.00 0.00 0.00 4.79
36 37 1.607628 GGTGTATCTAGCATCGTCGGT 59.392 52.381 0.00 0.00 0.00 4.69
37 38 2.604855 GGTGTATCTAGCATCGTCGGTG 60.605 54.545 0.00 0.00 0.00 4.94
38 39 1.607148 TGTATCTAGCATCGTCGGTGG 59.393 52.381 7.76 0.00 0.00 4.61
39 40 1.068472 GTATCTAGCATCGTCGGTGGG 60.068 57.143 7.76 0.00 0.00 4.61
40 41 2.088674 ATCTAGCATCGTCGGTGGGC 62.089 60.000 7.76 0.00 0.00 5.36
41 42 4.201679 TAGCATCGTCGGTGGGCG 62.202 66.667 7.76 0.00 0.00 6.13
52 53 4.760047 GTGGGCGTGCGGAGATGT 62.760 66.667 0.00 0.00 0.00 3.06
53 54 4.758251 TGGGCGTGCGGAGATGTG 62.758 66.667 0.00 0.00 0.00 3.21
54 55 4.760047 GGGCGTGCGGAGATGTGT 62.760 66.667 0.00 0.00 0.00 3.72
55 56 3.188786 GGCGTGCGGAGATGTGTC 61.189 66.667 0.00 0.00 0.00 3.67
56 57 2.125912 GCGTGCGGAGATGTGTCT 60.126 61.111 0.00 0.00 37.42 3.41
63 64 2.885861 GAGATGTGTCTCCGGCGT 59.114 61.111 6.01 0.00 44.20 5.68
64 65 2.104267 GAGATGTGTCTCCGGCGTA 58.896 57.895 6.01 0.00 44.20 4.42
65 66 0.669077 GAGATGTGTCTCCGGCGTAT 59.331 55.000 6.01 0.00 44.20 3.06
66 67 0.669077 AGATGTGTCTCCGGCGTATC 59.331 55.000 6.01 0.00 0.00 2.24
67 68 0.669077 GATGTGTCTCCGGCGTATCT 59.331 55.000 6.01 0.00 0.00 1.98
68 69 0.385751 ATGTGTCTCCGGCGTATCTG 59.614 55.000 6.01 0.00 0.00 2.90
69 70 0.963856 TGTGTCTCCGGCGTATCTGT 60.964 55.000 6.01 0.00 0.00 3.41
70 71 0.248539 GTGTCTCCGGCGTATCTGTC 60.249 60.000 6.01 0.00 0.00 3.51
71 72 1.359475 GTCTCCGGCGTATCTGTCC 59.641 63.158 6.01 0.00 0.00 4.02
72 73 1.102222 GTCTCCGGCGTATCTGTCCT 61.102 60.000 6.01 0.00 0.00 3.85
73 74 0.395311 TCTCCGGCGTATCTGTCCTT 60.395 55.000 6.01 0.00 0.00 3.36
74 75 0.249073 CTCCGGCGTATCTGTCCTTG 60.249 60.000 6.01 0.00 0.00 3.61
75 76 1.883084 CCGGCGTATCTGTCCTTGC 60.883 63.158 6.01 0.00 0.00 4.01
76 77 1.141881 CGGCGTATCTGTCCTTGCT 59.858 57.895 0.00 0.00 0.00 3.91
77 78 1.148157 CGGCGTATCTGTCCTTGCTG 61.148 60.000 0.00 0.00 0.00 4.41
78 79 0.811616 GGCGTATCTGTCCTTGCTGG 60.812 60.000 0.00 0.00 37.10 4.85
79 80 0.175760 GCGTATCTGTCCTTGCTGGA 59.824 55.000 0.00 0.00 43.86 3.86
87 88 2.858622 TCCTTGCTGGATTTGCTCG 58.141 52.632 0.00 0.00 40.56 5.03
88 89 0.677731 TCCTTGCTGGATTTGCTCGG 60.678 55.000 0.00 0.00 40.56 4.63
89 90 0.677731 CCTTGCTGGATTTGCTCGGA 60.678 55.000 0.00 0.00 38.35 4.55
90 91 1.386533 CTTGCTGGATTTGCTCGGAT 58.613 50.000 0.00 0.00 0.00 4.18
91 92 1.332997 CTTGCTGGATTTGCTCGGATC 59.667 52.381 0.00 0.00 0.00 3.36
92 93 0.543277 TGCTGGATTTGCTCGGATCT 59.457 50.000 0.00 0.00 0.00 2.75
93 94 0.942962 GCTGGATTTGCTCGGATCTG 59.057 55.000 0.00 0.00 0.00 2.90
94 95 1.590932 CTGGATTTGCTCGGATCTGG 58.409 55.000 0.62 0.00 0.00 3.86
95 96 0.911769 TGGATTTGCTCGGATCTGGT 59.088 50.000 0.62 0.00 0.00 4.00
96 97 1.134401 TGGATTTGCTCGGATCTGGTC 60.134 52.381 0.62 0.00 0.00 4.02
97 98 1.212616 GATTTGCTCGGATCTGGTCG 58.787 55.000 0.62 0.00 0.00 4.79
98 99 0.811616 ATTTGCTCGGATCTGGTCGC 60.812 55.000 0.62 3.28 0.00 5.19
99 100 2.166130 TTTGCTCGGATCTGGTCGCA 62.166 55.000 0.62 5.90 0.00 5.10
100 101 2.279120 GCTCGGATCTGGTCGCAG 60.279 66.667 0.62 0.00 0.00 5.18
101 102 3.069980 GCTCGGATCTGGTCGCAGT 62.070 63.158 0.62 0.00 0.00 4.40
102 103 1.513158 CTCGGATCTGGTCGCAGTT 59.487 57.895 0.62 0.00 0.00 3.16
103 104 0.526524 CTCGGATCTGGTCGCAGTTC 60.527 60.000 0.62 0.00 0.00 3.01
104 105 1.874019 CGGATCTGGTCGCAGTTCG 60.874 63.158 0.00 0.00 40.15 3.95
105 106 1.215647 GGATCTGGTCGCAGTTCGT 59.784 57.895 0.00 0.00 39.67 3.85
106 107 0.802607 GGATCTGGTCGCAGTTCGTC 60.803 60.000 0.00 0.00 39.67 4.20
107 108 0.171455 GATCTGGTCGCAGTTCGTCT 59.829 55.000 0.00 0.00 39.67 4.18
108 109 1.400846 GATCTGGTCGCAGTTCGTCTA 59.599 52.381 0.00 0.00 39.67 2.59
109 110 0.520404 TCTGGTCGCAGTTCGTCTAC 59.480 55.000 0.00 0.00 39.67 2.59
110 111 0.793478 CTGGTCGCAGTTCGTCTACG 60.793 60.000 0.00 0.00 39.67 3.51
111 112 1.208614 GGTCGCAGTTCGTCTACGT 59.791 57.895 2.02 0.00 40.80 3.57
112 113 0.386478 GGTCGCAGTTCGTCTACGTT 60.386 55.000 0.00 0.00 40.80 3.99
113 114 1.402511 GTCGCAGTTCGTCTACGTTT 58.597 50.000 0.00 0.00 40.80 3.60
114 115 1.121967 GTCGCAGTTCGTCTACGTTTG 59.878 52.381 0.00 1.65 40.80 2.93
115 116 1.126079 CGCAGTTCGTCTACGTTTGT 58.874 50.000 0.00 0.00 40.80 2.83
116 117 1.136992 CGCAGTTCGTCTACGTTTGTG 60.137 52.381 0.00 3.30 40.80 3.33
117 118 1.856597 GCAGTTCGTCTACGTTTGTGT 59.143 47.619 0.00 0.00 40.80 3.72
118 119 2.283351 GCAGTTCGTCTACGTTTGTGTT 59.717 45.455 0.00 0.00 40.80 3.32
119 120 3.242188 GCAGTTCGTCTACGTTTGTGTTT 60.242 43.478 0.00 0.00 40.80 2.83
120 121 4.502558 CAGTTCGTCTACGTTTGTGTTTC 58.497 43.478 0.00 0.00 40.80 2.78
121 122 4.266976 CAGTTCGTCTACGTTTGTGTTTCT 59.733 41.667 0.00 0.00 40.80 2.52
122 123 4.866486 AGTTCGTCTACGTTTGTGTTTCTT 59.134 37.500 0.00 0.00 40.80 2.52
123 124 5.005107 AGTTCGTCTACGTTTGTGTTTCTTC 59.995 40.000 0.00 0.00 40.80 2.87
124 125 3.483196 TCGTCTACGTTTGTGTTTCTTCG 59.517 43.478 0.00 0.00 40.80 3.79
125 126 3.361339 CGTCTACGTTTGTGTTTCTTCGG 60.361 47.826 0.00 0.00 34.11 4.30
126 127 3.060070 GTCTACGTTTGTGTTTCTTCGGG 60.060 47.826 0.00 0.00 0.00 5.14
127 128 1.741528 ACGTTTGTGTTTCTTCGGGT 58.258 45.000 0.00 0.00 0.00 5.28
128 129 2.086094 ACGTTTGTGTTTCTTCGGGTT 58.914 42.857 0.00 0.00 0.00 4.11
129 130 2.159490 ACGTTTGTGTTTCTTCGGGTTG 60.159 45.455 0.00 0.00 0.00 3.77
130 131 2.793237 CGTTTGTGTTTCTTCGGGTTGG 60.793 50.000 0.00 0.00 0.00 3.77
131 132 2.421751 TTGTGTTTCTTCGGGTTGGA 57.578 45.000 0.00 0.00 0.00 3.53
132 133 2.649531 TGTGTTTCTTCGGGTTGGAT 57.350 45.000 0.00 0.00 0.00 3.41
133 134 2.938838 TGTGTTTCTTCGGGTTGGATT 58.061 42.857 0.00 0.00 0.00 3.01
134 135 2.882137 TGTGTTTCTTCGGGTTGGATTC 59.118 45.455 0.00 0.00 0.00 2.52
135 136 3.146847 GTGTTTCTTCGGGTTGGATTCT 58.853 45.455 0.00 0.00 0.00 2.40
136 137 3.568430 GTGTTTCTTCGGGTTGGATTCTT 59.432 43.478 0.00 0.00 0.00 2.52
137 138 4.037565 GTGTTTCTTCGGGTTGGATTCTTT 59.962 41.667 0.00 0.00 0.00 2.52
138 139 4.277423 TGTTTCTTCGGGTTGGATTCTTTC 59.723 41.667 0.00 0.00 0.00 2.62
139 140 2.695359 TCTTCGGGTTGGATTCTTTCG 58.305 47.619 0.00 0.00 0.00 3.46
140 141 2.300723 TCTTCGGGTTGGATTCTTTCGA 59.699 45.455 0.00 0.00 0.00 3.71
141 142 3.055385 TCTTCGGGTTGGATTCTTTCGAT 60.055 43.478 0.00 0.00 0.00 3.59
142 143 2.901249 TCGGGTTGGATTCTTTCGATC 58.099 47.619 0.00 0.00 0.00 3.69
143 144 2.500098 TCGGGTTGGATTCTTTCGATCT 59.500 45.455 0.00 0.00 0.00 2.75
144 145 3.702548 TCGGGTTGGATTCTTTCGATCTA 59.297 43.478 0.00 0.00 0.00 1.98
145 146 3.802685 CGGGTTGGATTCTTTCGATCTAC 59.197 47.826 0.00 0.00 0.00 2.59
146 147 3.802685 GGGTTGGATTCTTTCGATCTACG 59.197 47.826 0.00 0.00 44.09 3.51
147 148 3.245519 GGTTGGATTCTTTCGATCTACGC 59.754 47.826 0.00 0.00 42.26 4.42
148 149 4.113354 GTTGGATTCTTTCGATCTACGCT 58.887 43.478 0.00 0.00 42.26 5.07
149 150 5.279384 GTTGGATTCTTTCGATCTACGCTA 58.721 41.667 0.00 0.00 42.26 4.26
150 151 4.856664 TGGATTCTTTCGATCTACGCTAC 58.143 43.478 0.00 0.00 42.26 3.58
151 152 4.579340 TGGATTCTTTCGATCTACGCTACT 59.421 41.667 0.00 0.00 42.26 2.57
152 153 5.148568 GGATTCTTTCGATCTACGCTACTC 58.851 45.833 0.00 0.00 42.26 2.59
153 154 5.049267 GGATTCTTTCGATCTACGCTACTCT 60.049 44.000 0.00 0.00 42.26 3.24
154 155 5.814764 TTCTTTCGATCTACGCTACTCTT 57.185 39.130 0.00 0.00 42.26 2.85
155 156 5.406767 TCTTTCGATCTACGCTACTCTTC 57.593 43.478 0.00 0.00 42.26 2.87
156 157 4.874396 TCTTTCGATCTACGCTACTCTTCA 59.126 41.667 0.00 0.00 42.26 3.02
157 158 5.527951 TCTTTCGATCTACGCTACTCTTCAT 59.472 40.000 0.00 0.00 42.26 2.57
158 159 4.994220 TCGATCTACGCTACTCTTCATC 57.006 45.455 0.00 0.00 42.26 2.92
159 160 3.429207 TCGATCTACGCTACTCTTCATCG 59.571 47.826 0.00 0.00 42.26 3.84
160 161 3.423776 CGATCTACGCTACTCTTCATCGG 60.424 52.174 0.00 0.00 34.51 4.18
161 162 1.602851 TCTACGCTACTCTTCATCGGC 59.397 52.381 0.00 0.00 0.00 5.54
162 163 0.306840 TACGCTACTCTTCATCGGCG 59.693 55.000 0.00 0.00 46.47 6.46
163 164 1.658717 CGCTACTCTTCATCGGCGG 60.659 63.158 7.21 0.00 39.12 6.13
164 165 1.951631 GCTACTCTTCATCGGCGGC 60.952 63.158 7.21 0.00 0.00 6.53
165 166 1.658717 CTACTCTTCATCGGCGGCG 60.659 63.158 27.15 27.15 0.00 6.46
166 167 3.133767 TACTCTTCATCGGCGGCGG 62.134 63.158 31.73 16.54 0.00 6.13
167 168 4.514577 CTCTTCATCGGCGGCGGT 62.515 66.667 31.73 23.77 0.00 5.68
168 169 4.077184 TCTTCATCGGCGGCGGTT 62.077 61.111 31.73 16.58 0.00 4.44
169 170 3.864686 CTTCATCGGCGGCGGTTG 61.865 66.667 31.73 26.46 0.00 3.77
178 179 4.389576 CGGCGGTTGCTGTTCTGC 62.390 66.667 0.00 0.00 42.79 4.26
179 180 2.980233 GGCGGTTGCTGTTCTGCT 60.980 61.111 3.65 0.00 42.25 4.24
180 181 2.253452 GCGGTTGCTGTTCTGCTG 59.747 61.111 3.65 0.00 38.39 4.41
181 182 2.253452 CGGTTGCTGTTCTGCTGC 59.747 61.111 0.00 0.00 41.65 5.25
182 183 2.253452 GGTTGCTGTTCTGCTGCG 59.747 61.111 0.00 0.00 43.81 5.18
183 184 2.428071 GTTGCTGTTCTGCTGCGC 60.428 61.111 0.00 0.00 43.81 6.09
184 185 2.592574 TTGCTGTTCTGCTGCGCT 60.593 55.556 9.73 0.00 43.81 5.92
185 186 2.900167 TTGCTGTTCTGCTGCGCTG 61.900 57.895 9.73 10.04 43.81 5.18
186 187 4.099170 GCTGTTCTGCTGCGCTGG 62.099 66.667 16.47 6.50 32.54 4.85
187 188 2.667536 CTGTTCTGCTGCGCTGGT 60.668 61.111 16.47 0.00 0.00 4.00
188 189 2.666190 TGTTCTGCTGCGCTGGTC 60.666 61.111 16.47 0.62 0.00 4.02
189 190 3.426568 GTTCTGCTGCGCTGGTCC 61.427 66.667 16.47 0.00 0.00 4.46
190 191 3.630013 TTCTGCTGCGCTGGTCCT 61.630 61.111 16.47 0.00 0.00 3.85
191 192 2.282783 TTCTGCTGCGCTGGTCCTA 61.283 57.895 16.47 0.00 0.00 2.94
192 193 1.617018 TTCTGCTGCGCTGGTCCTAT 61.617 55.000 16.47 0.00 0.00 2.57
193 194 1.886313 CTGCTGCGCTGGTCCTATG 60.886 63.158 16.47 0.00 0.00 2.23
194 195 2.590007 GCTGCGCTGGTCCTATGG 60.590 66.667 16.47 0.00 0.00 2.74
195 196 2.109799 CTGCGCTGGTCCTATGGG 59.890 66.667 9.73 0.00 0.00 4.00
196 197 3.466791 CTGCGCTGGTCCTATGGGG 62.467 68.421 9.73 0.00 0.00 4.96
197 198 4.937431 GCGCTGGTCCTATGGGGC 62.937 72.222 0.00 0.00 36.26 5.80
204 205 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
205 206 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
206 207 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
207 208 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
208 209 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
209 210 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
210 211 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
211 212 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
212 213 2.508663 GGCCTTAGCACGACGACC 60.509 66.667 0.00 0.00 42.56 4.79
213 214 2.572284 GCCTTAGCACGACGACCT 59.428 61.111 0.00 0.00 39.53 3.85
214 215 1.516603 GCCTTAGCACGACGACCTC 60.517 63.158 0.00 0.00 39.53 3.85
215 216 1.139095 CCTTAGCACGACGACCTCC 59.861 63.158 0.00 0.00 0.00 4.30
216 217 1.139095 CTTAGCACGACGACCTCCC 59.861 63.158 0.00 0.00 0.00 4.30
217 218 2.594119 CTTAGCACGACGACCTCCCG 62.594 65.000 0.00 0.00 0.00 5.14
218 219 3.610619 TAGCACGACGACCTCCCGA 62.611 63.158 0.00 0.00 0.00 5.14
219 220 4.773117 GCACGACGACCTCCCGAC 62.773 72.222 0.00 0.00 0.00 4.79
220 221 3.054503 CACGACGACCTCCCGACT 61.055 66.667 0.00 0.00 0.00 4.18
221 222 3.054503 ACGACGACCTCCCGACTG 61.055 66.667 0.00 0.00 0.00 3.51
222 223 3.054503 CGACGACCTCCCGACTGT 61.055 66.667 0.00 0.00 0.00 3.55
223 224 2.876219 GACGACCTCCCGACTGTC 59.124 66.667 0.00 0.00 0.00 3.51
224 225 1.674980 GACGACCTCCCGACTGTCT 60.675 63.158 6.21 0.00 0.00 3.41
225 226 0.392193 GACGACCTCCCGACTGTCTA 60.392 60.000 6.21 0.00 0.00 2.59
226 227 0.676151 ACGACCTCCCGACTGTCTAC 60.676 60.000 6.21 0.00 0.00 2.59
227 228 0.392729 CGACCTCCCGACTGTCTACT 60.393 60.000 6.21 0.00 0.00 2.57
228 229 1.134580 CGACCTCCCGACTGTCTACTA 60.135 57.143 6.21 0.00 0.00 1.82
229 230 2.287769 GACCTCCCGACTGTCTACTAC 58.712 57.143 6.21 0.00 0.00 2.73
230 231 1.632409 ACCTCCCGACTGTCTACTACA 59.368 52.381 6.21 0.00 36.42 2.74
231 232 2.040813 ACCTCCCGACTGTCTACTACAA 59.959 50.000 6.21 0.00 37.74 2.41
232 233 2.422832 CCTCCCGACTGTCTACTACAAC 59.577 54.545 6.21 0.00 37.74 3.32
233 234 3.079578 CTCCCGACTGTCTACTACAACA 58.920 50.000 6.21 0.00 37.74 3.33
234 235 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
235 236 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
236 237 3.255149 CCCGACTGTCTACTACAACAAGT 59.745 47.826 6.21 0.00 37.74 3.16
237 238 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
238 239 5.287226 CCGACTGTCTACTACAACAAGTTT 58.713 41.667 6.21 0.00 37.74 2.66
239 240 5.751990 CCGACTGTCTACTACAACAAGTTTT 59.248 40.000 6.21 0.00 37.74 2.43
240 241 6.292168 CCGACTGTCTACTACAACAAGTTTTG 60.292 42.308 6.21 0.00 37.74 2.44
241 242 6.359480 ACTGTCTACTACAACAAGTTTTGC 57.641 37.500 0.00 0.00 37.74 3.68
242 243 5.296035 ACTGTCTACTACAACAAGTTTTGCC 59.704 40.000 0.00 0.00 37.74 4.52
243 244 4.577283 TGTCTACTACAACAAGTTTTGCCC 59.423 41.667 0.00 0.00 34.29 5.36
244 245 3.810941 TCTACTACAACAAGTTTTGCCCG 59.189 43.478 0.00 0.00 0.00 6.13
245 246 1.679153 ACTACAACAAGTTTTGCCCGG 59.321 47.619 0.00 0.00 0.00 5.73
246 247 0.386113 TACAACAAGTTTTGCCCGGC 59.614 50.000 1.04 1.04 0.00 6.13
247 248 1.326951 ACAACAAGTTTTGCCCGGCT 61.327 50.000 11.61 0.00 0.00 5.52
248 249 0.597377 CAACAAGTTTTGCCCGGCTC 60.597 55.000 11.61 0.00 0.00 4.70
249 250 1.744320 AACAAGTTTTGCCCGGCTCC 61.744 55.000 11.61 0.00 0.00 4.70
250 251 2.983592 AAGTTTTGCCCGGCTCCG 60.984 61.111 11.61 0.48 39.44 4.63
267 268 4.918201 GGCGAAGGAGGGGCGATG 62.918 72.222 0.00 0.00 0.00 3.84
268 269 3.849951 GCGAAGGAGGGGCGATGA 61.850 66.667 0.00 0.00 0.00 2.92
269 270 2.107141 CGAAGGAGGGGCGATGAC 59.893 66.667 0.00 0.00 0.00 3.06
270 271 2.107141 GAAGGAGGGGCGATGACG 59.893 66.667 0.00 0.00 42.93 4.35
271 272 3.447025 GAAGGAGGGGCGATGACGG 62.447 68.421 0.00 0.00 40.15 4.79
295 296 2.742372 GCCTTCGGCTCGCTTCAA 60.742 61.111 0.00 0.00 46.69 2.69
296 297 2.109126 GCCTTCGGCTCGCTTCAAT 61.109 57.895 0.00 0.00 46.69 2.57
297 298 1.717937 CCTTCGGCTCGCTTCAATG 59.282 57.895 0.00 0.00 0.00 2.82
298 299 1.021390 CCTTCGGCTCGCTTCAATGT 61.021 55.000 0.00 0.00 0.00 2.71
299 300 0.798776 CTTCGGCTCGCTTCAATGTT 59.201 50.000 0.00 0.00 0.00 2.71
300 301 1.197721 CTTCGGCTCGCTTCAATGTTT 59.802 47.619 0.00 0.00 0.00 2.83
301 302 0.516877 TCGGCTCGCTTCAATGTTTG 59.483 50.000 0.00 0.00 0.00 2.93
302 303 0.238289 CGGCTCGCTTCAATGTTTGT 59.762 50.000 0.00 0.00 0.00 2.83
303 304 1.463056 CGGCTCGCTTCAATGTTTGTA 59.537 47.619 0.00 0.00 0.00 2.41
304 305 2.474526 CGGCTCGCTTCAATGTTTGTAG 60.475 50.000 0.00 0.00 0.00 2.74
305 306 2.484264 GGCTCGCTTCAATGTTTGTAGT 59.516 45.455 0.00 0.00 31.53 2.73
306 307 3.424962 GGCTCGCTTCAATGTTTGTAGTC 60.425 47.826 0.00 0.00 31.53 2.59
307 308 3.722082 GCTCGCTTCAATGTTTGTAGTCG 60.722 47.826 0.00 0.00 33.03 4.18
308 309 3.386486 TCGCTTCAATGTTTGTAGTCGT 58.614 40.909 8.92 0.00 33.28 4.34
309 310 3.427528 TCGCTTCAATGTTTGTAGTCGTC 59.572 43.478 8.92 0.00 33.28 4.20
310 311 3.718036 CGCTTCAATGTTTGTAGTCGTCG 60.718 47.826 0.00 0.00 31.53 5.12
311 312 3.722123 CTTCAATGTTTGTAGTCGTCGC 58.278 45.455 0.00 0.00 0.00 5.19
312 313 3.021269 TCAATGTTTGTAGTCGTCGCT 57.979 42.857 0.00 0.00 0.00 4.93
313 314 4.163458 TCAATGTTTGTAGTCGTCGCTA 57.837 40.909 0.00 0.00 0.00 4.26
314 315 4.163552 TCAATGTTTGTAGTCGTCGCTAG 58.836 43.478 0.00 0.00 0.00 3.42
315 316 2.624316 TGTTTGTAGTCGTCGCTAGG 57.376 50.000 0.00 0.00 0.00 3.02
316 317 1.881973 TGTTTGTAGTCGTCGCTAGGT 59.118 47.619 0.00 0.00 0.00 3.08
317 318 2.248487 GTTTGTAGTCGTCGCTAGGTG 58.752 52.381 0.00 0.00 0.00 4.00
318 319 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
319 320 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
320 321 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
321 322 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
322 323 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
323 324 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
324 325 1.002684 GTCGTCGCTAGGTGGTCTATG 60.003 57.143 0.00 0.00 0.00 2.23
325 326 0.311165 CGTCGCTAGGTGGTCTATGG 59.689 60.000 0.00 0.00 0.00 2.74
326 327 1.688772 GTCGCTAGGTGGTCTATGGA 58.311 55.000 0.00 0.00 0.00 3.41
327 328 2.240279 GTCGCTAGGTGGTCTATGGAT 58.760 52.381 0.00 0.00 0.00 3.41
328 329 2.229302 GTCGCTAGGTGGTCTATGGATC 59.771 54.545 0.00 0.00 0.00 3.36
329 330 2.108425 TCGCTAGGTGGTCTATGGATCT 59.892 50.000 0.00 0.00 0.00 2.75
330 331 3.329814 TCGCTAGGTGGTCTATGGATCTA 59.670 47.826 0.00 0.00 0.00 1.98
331 332 3.692101 CGCTAGGTGGTCTATGGATCTAG 59.308 52.174 0.00 0.00 0.00 2.43
332 333 4.565861 CGCTAGGTGGTCTATGGATCTAGA 60.566 50.000 0.00 0.00 0.00 2.43
333 334 5.515106 GCTAGGTGGTCTATGGATCTAGAT 58.485 45.833 4.47 4.47 30.75 1.98
334 335 5.359576 GCTAGGTGGTCTATGGATCTAGATG 59.640 48.000 10.74 0.00 30.75 2.90
335 336 5.346782 AGGTGGTCTATGGATCTAGATGT 57.653 43.478 10.74 0.00 30.75 3.06
336 337 6.470456 AGGTGGTCTATGGATCTAGATGTA 57.530 41.667 10.74 0.00 30.75 2.29
337 338 6.864421 AGGTGGTCTATGGATCTAGATGTAA 58.136 40.000 10.74 0.00 30.75 2.41
338 339 7.483018 AGGTGGTCTATGGATCTAGATGTAAT 58.517 38.462 10.74 3.49 30.75 1.89
339 340 7.958583 AGGTGGTCTATGGATCTAGATGTAATT 59.041 37.037 10.74 0.00 30.75 1.40
340 341 8.598041 GGTGGTCTATGGATCTAGATGTAATTT 58.402 37.037 10.74 0.00 30.75 1.82
370 371 7.701539 ATTTCTAGTGTTCATTGTATTGCCA 57.298 32.000 0.00 0.00 0.00 4.92
371 372 7.701539 TTTCTAGTGTTCATTGTATTGCCAT 57.298 32.000 0.00 0.00 0.00 4.40
372 373 6.682423 TCTAGTGTTCATTGTATTGCCATG 57.318 37.500 0.00 0.00 0.00 3.66
373 374 6.413892 TCTAGTGTTCATTGTATTGCCATGA 58.586 36.000 0.00 0.00 0.00 3.07
374 375 7.056006 TCTAGTGTTCATTGTATTGCCATGAT 58.944 34.615 0.00 0.00 0.00 2.45
375 376 6.534475 AGTGTTCATTGTATTGCCATGATT 57.466 33.333 0.00 0.00 0.00 2.57
376 377 6.334989 AGTGTTCATTGTATTGCCATGATTG 58.665 36.000 0.00 0.00 0.00 2.67
377 378 6.153170 AGTGTTCATTGTATTGCCATGATTGA 59.847 34.615 0.00 0.00 0.00 2.57
378 379 6.812656 GTGTTCATTGTATTGCCATGATTGAA 59.187 34.615 0.00 0.00 0.00 2.69
379 380 7.009815 GTGTTCATTGTATTGCCATGATTGAAG 59.990 37.037 0.00 0.00 0.00 3.02
380 381 7.093858 TGTTCATTGTATTGCCATGATTGAAGA 60.094 33.333 0.00 0.00 0.00 2.87
381 382 7.591421 TCATTGTATTGCCATGATTGAAGAT 57.409 32.000 0.00 0.00 0.00 2.40
382 383 7.430441 TCATTGTATTGCCATGATTGAAGATG 58.570 34.615 0.00 0.00 0.00 2.90
383 384 7.285858 TCATTGTATTGCCATGATTGAAGATGA 59.714 33.333 0.00 0.00 0.00 2.92
384 385 7.407393 TTGTATTGCCATGATTGAAGATGAA 57.593 32.000 0.00 0.00 0.00 2.57
385 386 7.591421 TGTATTGCCATGATTGAAGATGAAT 57.409 32.000 0.00 0.00 0.00 2.57
386 387 8.694581 TGTATTGCCATGATTGAAGATGAATA 57.305 30.769 0.00 0.00 0.00 1.75
387 388 8.789762 TGTATTGCCATGATTGAAGATGAATAG 58.210 33.333 0.00 0.00 0.00 1.73
388 389 9.006839 GTATTGCCATGATTGAAGATGAATAGA 57.993 33.333 0.00 0.00 0.00 1.98
389 390 8.651589 ATTGCCATGATTGAAGATGAATAGAT 57.348 30.769 0.00 0.00 0.00 1.98
390 391 8.473358 TTGCCATGATTGAAGATGAATAGATT 57.527 30.769 0.00 0.00 0.00 2.40
391 392 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
392 393 7.722285 TGCCATGATTGAAGATGAATAGATTGA 59.278 33.333 0.00 0.00 0.00 2.57
393 394 8.573885 GCCATGATTGAAGATGAATAGATTGAA 58.426 33.333 0.00 0.00 0.00 2.69
436 437 4.744795 AACATACAGGAGATCACTGTCC 57.255 45.455 21.67 8.27 45.50 4.02
437 438 3.987745 ACATACAGGAGATCACTGTCCT 58.012 45.455 21.67 10.33 45.50 3.85
438 439 5.130705 ACATACAGGAGATCACTGTCCTA 57.869 43.478 21.67 9.33 45.50 2.94
439 440 5.136828 ACATACAGGAGATCACTGTCCTAG 58.863 45.833 21.67 14.13 45.50 3.02
440 441 3.025322 ACAGGAGATCACTGTCCTAGG 57.975 52.381 15.01 0.82 45.50 3.02
441 442 1.686052 CAGGAGATCACTGTCCTAGGC 59.314 57.143 2.96 0.00 43.14 3.93
442 443 1.573376 AGGAGATCACTGTCCTAGGCT 59.427 52.381 2.96 0.00 43.17 4.58
443 444 2.023501 AGGAGATCACTGTCCTAGGCTT 60.024 50.000 2.96 0.00 43.17 4.35
444 445 2.102252 GGAGATCACTGTCCTAGGCTTG 59.898 54.545 2.96 0.00 32.02 4.01
445 446 2.102252 GAGATCACTGTCCTAGGCTTGG 59.898 54.545 8.84 8.84 0.00 3.61
446 447 2.111384 GATCACTGTCCTAGGCTTGGA 58.889 52.381 13.89 13.89 0.00 3.53
447 448 2.024176 TCACTGTCCTAGGCTTGGAA 57.976 50.000 19.30 9.03 35.10 3.53
448 449 2.334977 TCACTGTCCTAGGCTTGGAAA 58.665 47.619 19.30 13.38 35.10 3.13
449 450 2.708861 TCACTGTCCTAGGCTTGGAAAA 59.291 45.455 19.30 9.94 35.10 2.29
450 451 2.814336 CACTGTCCTAGGCTTGGAAAAC 59.186 50.000 19.30 8.64 35.10 2.43
451 452 2.711547 ACTGTCCTAGGCTTGGAAAACT 59.288 45.455 19.30 0.00 35.10 2.66
452 453 3.138468 ACTGTCCTAGGCTTGGAAAACTT 59.862 43.478 19.30 0.00 35.10 2.66
453 454 4.349930 ACTGTCCTAGGCTTGGAAAACTTA 59.650 41.667 19.30 2.03 35.10 2.24
454 455 4.648651 TGTCCTAGGCTTGGAAAACTTAC 58.351 43.478 19.30 6.53 35.10 2.34
455 456 4.008330 GTCCTAGGCTTGGAAAACTTACC 58.992 47.826 19.30 0.93 35.10 2.85
456 457 3.653836 TCCTAGGCTTGGAAAACTTACCA 59.346 43.478 15.50 0.00 0.00 3.25
457 458 4.010349 CCTAGGCTTGGAAAACTTACCAG 58.990 47.826 9.57 0.00 37.48 4.00
458 459 3.876309 AGGCTTGGAAAACTTACCAGA 57.124 42.857 0.00 0.00 37.48 3.86
459 460 4.388577 AGGCTTGGAAAACTTACCAGAT 57.611 40.909 0.00 0.00 37.48 2.90
460 461 4.740902 AGGCTTGGAAAACTTACCAGATT 58.259 39.130 0.00 0.00 37.48 2.40
461 462 4.767409 AGGCTTGGAAAACTTACCAGATTC 59.233 41.667 0.00 0.00 37.48 2.52
462 463 4.767409 GGCTTGGAAAACTTACCAGATTCT 59.233 41.667 0.00 0.00 37.48 2.40
463 464 5.944007 GGCTTGGAAAACTTACCAGATTCTA 59.056 40.000 0.00 0.00 37.48 2.10
464 465 6.603599 GGCTTGGAAAACTTACCAGATTCTAT 59.396 38.462 0.00 0.00 37.48 1.98
465 466 7.773690 GGCTTGGAAAACTTACCAGATTCTATA 59.226 37.037 0.00 0.00 37.48 1.31
466 467 9.174166 GCTTGGAAAACTTACCAGATTCTATAA 57.826 33.333 0.00 0.00 37.48 0.98
476 477 9.968870 CTTACCAGATTCTATAACTTGTACTCC 57.031 37.037 0.00 0.00 0.00 3.85
477 478 7.362802 ACCAGATTCTATAACTTGTACTCCC 57.637 40.000 0.00 0.00 0.00 4.30
478 479 7.133483 ACCAGATTCTATAACTTGTACTCCCT 58.867 38.462 0.00 0.00 0.00 4.20
479 480 7.288158 ACCAGATTCTATAACTTGTACTCCCTC 59.712 40.741 0.00 0.00 0.00 4.30
480 481 7.256012 CCAGATTCTATAACTTGTACTCCCTCC 60.256 44.444 0.00 0.00 0.00 4.30
481 482 6.490721 AGATTCTATAACTTGTACTCCCTCCG 59.509 42.308 0.00 0.00 0.00 4.63
482 483 5.121380 TCTATAACTTGTACTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
483 484 5.128919 TCTATAACTTGTACTCCCTCCGTC 58.871 45.833 0.00 0.00 0.00 4.79
484 485 1.264295 AACTTGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
485 486 0.408700 ACTTGTACTCCCTCCGTCCT 59.591 55.000 0.00 0.00 0.00 3.85
486 487 1.637553 ACTTGTACTCCCTCCGTCCTA 59.362 52.381 0.00 0.00 0.00 2.94
487 488 2.042162 ACTTGTACTCCCTCCGTCCTAA 59.958 50.000 0.00 0.00 0.00 2.69
488 489 2.905415 TGTACTCCCTCCGTCCTAAA 57.095 50.000 0.00 0.00 0.00 1.85
489 490 3.173953 TGTACTCCCTCCGTCCTAAAA 57.826 47.619 0.00 0.00 0.00 1.52
490 491 3.716431 TGTACTCCCTCCGTCCTAAAAT 58.284 45.455 0.00 0.00 0.00 1.82
491 492 4.098894 TGTACTCCCTCCGTCCTAAAATT 58.901 43.478 0.00 0.00 0.00 1.82
492 493 3.908643 ACTCCCTCCGTCCTAAAATTC 57.091 47.619 0.00 0.00 0.00 2.17
493 494 3.451890 ACTCCCTCCGTCCTAAAATTCT 58.548 45.455 0.00 0.00 0.00 2.40
494 495 3.844804 ACTCCCTCCGTCCTAAAATTCTT 59.155 43.478 0.00 0.00 0.00 2.52
495 496 4.192317 CTCCCTCCGTCCTAAAATTCTTG 58.808 47.826 0.00 0.00 0.00 3.02
496 497 3.585732 TCCCTCCGTCCTAAAATTCTTGT 59.414 43.478 0.00 0.00 0.00 3.16
497 498 4.042435 TCCCTCCGTCCTAAAATTCTTGTT 59.958 41.667 0.00 0.00 0.00 2.83
498 499 4.765339 CCCTCCGTCCTAAAATTCTTGTTT 59.235 41.667 0.00 0.00 0.00 2.83
499 500 5.243060 CCCTCCGTCCTAAAATTCTTGTTTT 59.757 40.000 0.00 0.00 35.60 2.43
500 501 6.431852 CCCTCCGTCCTAAAATTCTTGTTTTA 59.568 38.462 0.00 0.00 33.62 1.52
501 502 7.361799 CCCTCCGTCCTAAAATTCTTGTTTTAG 60.362 40.741 10.61 10.61 45.04 1.85
502 503 7.389607 CCTCCGTCCTAAAATTCTTGTTTTAGA 59.610 37.037 16.53 4.80 46.89 2.10
503 504 8.857694 TCCGTCCTAAAATTCTTGTTTTAGAT 57.142 30.769 16.53 0.00 46.89 1.98
504 505 9.292195 TCCGTCCTAAAATTCTTGTTTTAGATT 57.708 29.630 16.53 0.00 46.89 2.40
505 506 9.908152 CCGTCCTAAAATTCTTGTTTTAGATTT 57.092 29.630 16.53 0.00 46.89 2.17
585 586 9.546428 AGACAAATCTAAAACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.04 4.12
586 587 9.541143 GACAAATCTAAAACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.04 4.37
587 588 9.325198 ACAAATCTAAAACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.04 4.46
588 589 8.487176 CAAATCTAAAACAAGAATTTTGGGACG 58.513 33.333 5.68 0.00 33.80 4.79
589 590 6.079424 TCTAAAACAAGAATTTTGGGACGG 57.921 37.500 0.00 0.00 33.80 4.79
590 591 5.828859 TCTAAAACAAGAATTTTGGGACGGA 59.171 36.000 0.00 0.00 33.80 4.69
591 592 4.584327 AAACAAGAATTTTGGGACGGAG 57.416 40.909 0.00 0.00 0.00 4.63
592 593 2.514803 ACAAGAATTTTGGGACGGAGG 58.485 47.619 0.00 0.00 0.00 4.30
593 594 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
594 595 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
595 596 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
596 597 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
597 598 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
598 599 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
599 600 1.961133 TTTGGGACGGAGGGAGTATT 58.039 50.000 0.00 0.00 0.00 1.89
600 601 1.961133 TTGGGACGGAGGGAGTATTT 58.039 50.000 0.00 0.00 0.00 1.40
601 602 1.200519 TGGGACGGAGGGAGTATTTG 58.799 55.000 0.00 0.00 0.00 2.32
602 603 1.273381 TGGGACGGAGGGAGTATTTGA 60.273 52.381 0.00 0.00 0.00 2.69
616 617 7.517604 AGGGAGTATTTGATATGAATACAGGGT 59.482 37.037 15.62 1.95 40.66 4.34
670 676 5.707242 TTTTTGTGTGTGTGAACTTGGTA 57.293 34.783 0.00 0.00 0.00 3.25
832 841 1.442769 GCCACTCTCAGCAAAATCGA 58.557 50.000 0.00 0.00 0.00 3.59
835 844 3.005554 CCACTCTCAGCAAAATCGATGT 58.994 45.455 0.00 0.00 0.00 3.06
869 878 4.083862 GGCCTCGTCCACCTCACC 62.084 72.222 0.00 0.00 0.00 4.02
1086 1096 3.411517 CCCCGACCCAATCTGCCT 61.412 66.667 0.00 0.00 0.00 4.75
1094 1104 2.587194 CAATCTGCCTCCGCTCCG 60.587 66.667 0.00 0.00 35.36 4.63
1219 1234 1.603744 CTCGATGCATGCTCGTAGCG 61.604 60.000 27.09 19.05 46.26 4.26
1220 1235 2.548292 GATGCATGCTCGTAGCGC 59.452 61.111 20.33 0.00 46.26 5.92
1660 1748 2.966050 TGAAACAAAACCAAGGTGCAC 58.034 42.857 8.80 8.80 0.00 4.57
1677 1765 2.368439 GCACCAGCATGAGTATCCAAA 58.632 47.619 0.00 0.00 39.69 3.28
1994 2083 1.005924 CCTAGCCTTCCCAAACACCAT 59.994 52.381 0.00 0.00 0.00 3.55
2042 2131 2.524394 ACCACCTGTGCCGACTCT 60.524 61.111 0.00 0.00 0.00 3.24
2176 2265 3.482156 AGAGAAGAACAAGAGCAAGCA 57.518 42.857 0.00 0.00 0.00 3.91
2335 2440 0.392193 CAGAAGCCTCGTGCCATCTT 60.392 55.000 0.00 0.00 42.71 2.40
2343 2448 0.674581 TCGTGCCATCTTGAAGCCAG 60.675 55.000 0.00 0.00 0.00 4.85
2605 2710 1.059692 CGACGATTGCACTGATGTCAC 59.940 52.381 0.00 0.00 0.00 3.67
2606 2711 2.068519 GACGATTGCACTGATGTCACA 58.931 47.619 0.00 0.00 0.00 3.58
2613 2718 2.270923 GCACTGATGTCACAATCGCTA 58.729 47.619 0.00 0.00 0.00 4.26
2626 2731 0.517755 ATCGCTAGCTACGACGATGG 59.482 55.000 13.93 0.00 43.13 3.51
2632 2737 1.809619 GCTACGACGATGGCAGCAA 60.810 57.895 2.73 0.00 32.46 3.91
2685 2790 6.463995 AAAACATTAAGGTGAGCAAGAACA 57.536 33.333 0.00 0.00 0.00 3.18
2845 2964 1.949525 ACTGTGGTGCTAGCTTTTGTG 59.050 47.619 17.23 5.13 0.00 3.33
2860 2979 7.687941 AGCTTTTGTGCTAGCTATTAAAAGA 57.312 32.000 29.03 7.65 45.46 2.52
2861 2980 7.756558 AGCTTTTGTGCTAGCTATTAAAAGAG 58.243 34.615 29.03 14.88 45.46 2.85
2862 2981 7.391833 AGCTTTTGTGCTAGCTATTAAAAGAGT 59.608 33.333 29.03 20.15 45.46 3.24
2863 2982 8.023706 GCTTTTGTGCTAGCTATTAAAAGAGTT 58.976 33.333 29.03 0.00 37.33 3.01
2864 2983 9.548208 CTTTTGTGCTAGCTATTAAAAGAGTTC 57.452 33.333 25.02 0.00 37.33 3.01
2865 2984 7.611213 TTGTGCTAGCTATTAAAAGAGTTCC 57.389 36.000 17.23 0.00 0.00 3.62
2866 2985 6.707290 TGTGCTAGCTATTAAAAGAGTTCCA 58.293 36.000 17.23 0.00 0.00 3.53
2867 2986 7.338710 TGTGCTAGCTATTAAAAGAGTTCCAT 58.661 34.615 17.23 0.00 0.00 3.41
2868 2987 7.280876 TGTGCTAGCTATTAAAAGAGTTCCATG 59.719 37.037 17.23 0.00 0.00 3.66
2869 2988 7.281100 GTGCTAGCTATTAAAAGAGTTCCATGT 59.719 37.037 17.23 0.00 0.00 3.21
2870 2989 8.482943 TGCTAGCTATTAAAAGAGTTCCATGTA 58.517 33.333 17.23 0.00 0.00 2.29
2871 2990 8.766151 GCTAGCTATTAAAAGAGTTCCATGTAC 58.234 37.037 7.70 0.00 0.00 2.90
2873 2992 8.950208 AGCTATTAAAAGAGTTCCATGTACTC 57.050 34.615 14.30 14.30 41.83 2.59
2874 2993 7.988028 AGCTATTAAAAGAGTTCCATGTACTCC 59.012 37.037 17.11 4.86 42.35 3.85
2875 2994 7.769044 GCTATTAAAAGAGTTCCATGTACTCCA 59.231 37.037 17.11 3.39 42.35 3.86
2876 2995 9.667107 CTATTAAAAGAGTTCCATGTACTCCAA 57.333 33.333 17.11 9.79 42.35 3.53
2940 3063 2.093021 TCTGATCATTGTGATGGGCGAA 60.093 45.455 0.00 0.00 37.20 4.70
2944 3067 2.445427 TCATTGTGATGGGCGAAATGT 58.555 42.857 0.00 0.00 33.93 2.71
2963 3086 4.822036 TGTGGTCAATTTTTACCGTGAG 57.178 40.909 0.00 0.00 38.70 3.51
2987 3110 7.846485 AGTGGTTTATTTGTTTATTTTGTGCG 58.154 30.769 0.00 0.00 0.00 5.34
2989 3112 6.074642 GGTTTATTTGTTTATTTTGTGCGGC 58.925 36.000 0.00 0.00 0.00 6.53
2991 3114 4.988708 ATTTGTTTATTTTGTGCGGCTG 57.011 36.364 0.00 0.00 0.00 4.85
2999 3122 0.600557 TTTGTGCGGCTGGTTTATGG 59.399 50.000 0.00 0.00 0.00 2.74
3003 3126 1.476488 GTGCGGCTGGTTTATGGAATT 59.524 47.619 0.00 0.00 0.00 2.17
3005 3128 1.802508 GCGGCTGGTTTATGGAATTGC 60.803 52.381 0.00 0.00 0.00 3.56
3008 3131 2.685897 GGCTGGTTTATGGAATTGCGTA 59.314 45.455 0.00 0.00 0.00 4.42
3034 3157 5.509670 GCTAGGCATTTGGTTCTTGAAAACT 60.510 40.000 0.00 0.00 0.00 2.66
3041 3164 7.011295 GCATTTGGTTCTTGAAAACTGATGAAA 59.989 33.333 0.00 0.00 0.00 2.69
3044 3167 7.403312 TGGTTCTTGAAAACTGATGAAAGAA 57.597 32.000 0.00 0.00 32.73 2.52
3053 3176 6.575162 AAACTGATGAAAGAATGTGGTACC 57.425 37.500 4.43 4.43 0.00 3.34
3054 3177 4.589908 ACTGATGAAAGAATGTGGTACCC 58.410 43.478 10.07 1.05 0.00 3.69
3062 3185 0.322187 AATGTGGTACCCGGCTCAAC 60.322 55.000 10.07 0.00 0.00 3.18
3068 3191 1.604308 TACCCGGCTCAACGAGACA 60.604 57.895 0.00 0.00 37.60 3.41
3210 3333 0.319900 CAAGGCAGCACTACTCGTGT 60.320 55.000 0.00 0.00 45.57 4.49
3362 3488 0.603569 AGTTCGCACTCACGGAATCT 59.396 50.000 0.00 0.00 0.00 2.40
3381 3507 6.926272 GGAATCTTTAGCTACGACATCTTCAT 59.074 38.462 0.00 0.00 0.00 2.57
3445 3571 3.430895 GCATGCTCACAAACAATCCAAAG 59.569 43.478 11.37 0.00 0.00 2.77
3449 3575 3.005155 GCTCACAAACAATCCAAAGAGCT 59.995 43.478 0.00 0.00 42.77 4.09
3453 3579 4.217118 CACAAACAATCCAAAGAGCTAGCT 59.783 41.667 19.45 19.45 0.00 3.32
3455 3581 6.094603 CACAAACAATCCAAAGAGCTAGCTAT 59.905 38.462 19.38 12.73 0.00 2.97
3456 3582 7.280876 CACAAACAATCCAAAGAGCTAGCTATA 59.719 37.037 19.38 0.00 0.00 1.31
3458 3584 7.793927 AACAATCCAAAGAGCTAGCTATAAC 57.206 36.000 19.38 4.97 0.00 1.89
3460 3586 7.512992 ACAATCCAAAGAGCTAGCTATAACAT 58.487 34.615 19.38 2.98 0.00 2.71
3549 3686 3.681897 CCATAGCCTGATCGTTTAGCATC 59.318 47.826 0.00 0.00 0.00 3.91
3570 3707 0.907486 CATGGACCCTCTCTCAGCAA 59.093 55.000 0.00 0.00 0.00 3.91
3719 3856 5.975693 AATACGAATTGTGTCCCATTGTT 57.024 34.783 0.00 0.00 0.00 2.83
3735 3872 0.539986 TGTTGGGGACTCGGCTATTC 59.460 55.000 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.788333 TGCTAGATACACCAACGGTAC 57.212 47.619 0.00 0.00 32.11 3.34
10 11 2.223735 CGATGCTAGATACACCAACGGT 60.224 50.000 0.00 0.00 35.62 4.83
11 12 2.223735 ACGATGCTAGATACACCAACGG 60.224 50.000 0.00 0.00 0.00 4.44
12 13 3.043586 GACGATGCTAGATACACCAACG 58.956 50.000 0.00 0.00 0.00 4.10
13 14 3.043586 CGACGATGCTAGATACACCAAC 58.956 50.000 0.00 0.00 0.00 3.77
14 15 2.034179 CCGACGATGCTAGATACACCAA 59.966 50.000 0.00 0.00 0.00 3.67
15 16 1.607148 CCGACGATGCTAGATACACCA 59.393 52.381 0.00 0.00 0.00 4.17
16 17 1.607628 ACCGACGATGCTAGATACACC 59.392 52.381 0.00 0.00 0.00 4.16
17 18 2.604855 CCACCGACGATGCTAGATACAC 60.605 54.545 0.00 0.00 0.00 2.90
18 19 1.607148 CCACCGACGATGCTAGATACA 59.393 52.381 0.00 0.00 0.00 2.29
19 20 1.068472 CCCACCGACGATGCTAGATAC 60.068 57.143 0.00 0.00 0.00 2.24
20 21 1.244816 CCCACCGACGATGCTAGATA 58.755 55.000 0.00 0.00 0.00 1.98
21 22 2.041976 CCCACCGACGATGCTAGAT 58.958 57.895 0.00 0.00 0.00 1.98
22 23 2.782222 GCCCACCGACGATGCTAGA 61.782 63.158 0.00 0.00 0.00 2.43
23 24 2.279517 GCCCACCGACGATGCTAG 60.280 66.667 0.00 0.00 0.00 3.42
24 25 4.201679 CGCCCACCGACGATGCTA 62.202 66.667 0.00 0.00 40.02 3.49
35 36 4.760047 ACATCTCCGCACGCCCAC 62.760 66.667 0.00 0.00 0.00 4.61
36 37 4.758251 CACATCTCCGCACGCCCA 62.758 66.667 0.00 0.00 0.00 5.36
37 38 4.760047 ACACATCTCCGCACGCCC 62.760 66.667 0.00 0.00 0.00 6.13
38 39 3.188786 GACACATCTCCGCACGCC 61.189 66.667 0.00 0.00 0.00 5.68
39 40 2.125912 AGACACATCTCCGCACGC 60.126 61.111 0.00 0.00 0.00 5.34
40 41 4.079090 GAGACACATCTCCGCACG 57.921 61.111 0.00 0.00 45.06 5.34
47 48 0.669077 GATACGCCGGAGACACATCT 59.331 55.000 13.83 0.00 38.15 2.90
48 49 0.669077 AGATACGCCGGAGACACATC 59.331 55.000 13.83 8.75 0.00 3.06
49 50 0.385751 CAGATACGCCGGAGACACAT 59.614 55.000 13.83 0.00 0.00 3.21
50 51 0.963856 ACAGATACGCCGGAGACACA 60.964 55.000 13.83 0.00 0.00 3.72
51 52 0.248539 GACAGATACGCCGGAGACAC 60.249 60.000 13.83 2.09 0.00 3.67
52 53 1.381928 GGACAGATACGCCGGAGACA 61.382 60.000 13.83 0.00 0.00 3.41
53 54 1.102222 AGGACAGATACGCCGGAGAC 61.102 60.000 13.83 2.86 0.00 3.36
54 55 0.395311 AAGGACAGATACGCCGGAGA 60.395 55.000 13.83 0.00 0.00 3.71
55 56 0.249073 CAAGGACAGATACGCCGGAG 60.249 60.000 5.05 3.72 0.00 4.63
56 57 1.813859 CAAGGACAGATACGCCGGA 59.186 57.895 5.05 0.00 0.00 5.14
57 58 1.883084 GCAAGGACAGATACGCCGG 60.883 63.158 0.00 0.00 0.00 6.13
58 59 1.141881 AGCAAGGACAGATACGCCG 59.858 57.895 0.00 0.00 0.00 6.46
59 60 0.811616 CCAGCAAGGACAGATACGCC 60.812 60.000 0.00 0.00 41.22 5.68
60 61 0.175760 TCCAGCAAGGACAGATACGC 59.824 55.000 0.00 0.00 43.07 4.42
70 71 0.677731 TCCGAGCAAATCCAGCAAGG 60.678 55.000 0.00 0.00 39.47 3.61
71 72 1.332997 GATCCGAGCAAATCCAGCAAG 59.667 52.381 0.00 0.00 0.00 4.01
72 73 1.065199 AGATCCGAGCAAATCCAGCAA 60.065 47.619 0.00 0.00 0.00 3.91
73 74 0.543277 AGATCCGAGCAAATCCAGCA 59.457 50.000 0.00 0.00 0.00 4.41
74 75 0.942962 CAGATCCGAGCAAATCCAGC 59.057 55.000 0.00 0.00 0.00 4.85
75 76 1.134280 ACCAGATCCGAGCAAATCCAG 60.134 52.381 0.00 0.00 0.00 3.86
76 77 0.911769 ACCAGATCCGAGCAAATCCA 59.088 50.000 0.00 0.00 0.00 3.41
77 78 1.587547 GACCAGATCCGAGCAAATCC 58.412 55.000 0.00 0.00 0.00 3.01
78 79 1.212616 CGACCAGATCCGAGCAAATC 58.787 55.000 0.00 0.00 0.00 2.17
79 80 0.811616 GCGACCAGATCCGAGCAAAT 60.812 55.000 0.00 0.00 0.00 2.32
80 81 1.447838 GCGACCAGATCCGAGCAAA 60.448 57.895 0.00 0.00 0.00 3.68
81 82 2.184322 GCGACCAGATCCGAGCAA 59.816 61.111 0.00 0.00 0.00 3.91
82 83 3.068064 TGCGACCAGATCCGAGCA 61.068 61.111 0.00 0.00 0.00 4.26
83 84 2.279120 CTGCGACCAGATCCGAGC 60.279 66.667 0.00 0.00 41.77 5.03
84 85 0.526524 GAACTGCGACCAGATCCGAG 60.527 60.000 0.00 0.00 41.77 4.63
85 86 1.511305 GAACTGCGACCAGATCCGA 59.489 57.895 0.00 0.00 41.77 4.55
86 87 1.874019 CGAACTGCGACCAGATCCG 60.874 63.158 0.00 0.00 44.57 4.18
87 88 0.802607 GACGAACTGCGACCAGATCC 60.803 60.000 0.00 0.00 44.57 3.36
88 89 0.171455 AGACGAACTGCGACCAGATC 59.829 55.000 0.00 0.00 44.57 2.75
89 90 1.132643 GTAGACGAACTGCGACCAGAT 59.867 52.381 0.00 0.00 44.57 2.90
90 91 0.520404 GTAGACGAACTGCGACCAGA 59.480 55.000 0.00 0.00 44.57 3.86
91 92 3.017232 GTAGACGAACTGCGACCAG 57.983 57.895 0.00 0.00 44.57 4.00
97 98 1.856597 ACACAAACGTAGACGAACTGC 59.143 47.619 9.41 0.00 43.02 4.40
98 99 4.266976 AGAAACACAAACGTAGACGAACTG 59.733 41.667 9.41 5.33 43.02 3.16
99 100 4.427312 AGAAACACAAACGTAGACGAACT 58.573 39.130 9.41 0.00 43.02 3.01
100 101 4.766969 AGAAACACAAACGTAGACGAAC 57.233 40.909 9.41 0.00 43.02 3.95
101 102 4.027458 CGAAGAAACACAAACGTAGACGAA 60.027 41.667 9.41 0.00 43.02 3.85
102 103 3.483196 CGAAGAAACACAAACGTAGACGA 59.517 43.478 9.41 0.00 43.02 4.20
103 104 3.361339 CCGAAGAAACACAAACGTAGACG 60.361 47.826 0.00 0.00 46.33 4.18
104 105 3.060070 CCCGAAGAAACACAAACGTAGAC 60.060 47.826 0.00 0.00 0.00 2.59
105 106 3.125316 CCCGAAGAAACACAAACGTAGA 58.875 45.455 0.00 0.00 0.00 2.59
106 107 2.867975 ACCCGAAGAAACACAAACGTAG 59.132 45.455 0.00 0.00 0.00 3.51
107 108 2.903798 ACCCGAAGAAACACAAACGTA 58.096 42.857 0.00 0.00 0.00 3.57
108 109 1.741528 ACCCGAAGAAACACAAACGT 58.258 45.000 0.00 0.00 0.00 3.99
109 110 2.446282 CAACCCGAAGAAACACAAACG 58.554 47.619 0.00 0.00 0.00 3.60
110 111 2.424246 TCCAACCCGAAGAAACACAAAC 59.576 45.455 0.00 0.00 0.00 2.93
111 112 2.724454 TCCAACCCGAAGAAACACAAA 58.276 42.857 0.00 0.00 0.00 2.83
112 113 2.421751 TCCAACCCGAAGAAACACAA 57.578 45.000 0.00 0.00 0.00 3.33
113 114 2.649531 ATCCAACCCGAAGAAACACA 57.350 45.000 0.00 0.00 0.00 3.72
114 115 3.146847 AGAATCCAACCCGAAGAAACAC 58.853 45.455 0.00 0.00 0.00 3.32
115 116 3.502123 AGAATCCAACCCGAAGAAACA 57.498 42.857 0.00 0.00 0.00 2.83
116 117 4.612939 CGAAAGAATCCAACCCGAAGAAAC 60.613 45.833 0.00 0.00 0.00 2.78
117 118 3.500680 CGAAAGAATCCAACCCGAAGAAA 59.499 43.478 0.00 0.00 0.00 2.52
118 119 3.071479 CGAAAGAATCCAACCCGAAGAA 58.929 45.455 0.00 0.00 0.00 2.52
119 120 2.300723 TCGAAAGAATCCAACCCGAAGA 59.699 45.455 0.00 0.00 37.03 2.87
120 121 2.695359 TCGAAAGAATCCAACCCGAAG 58.305 47.619 0.00 0.00 37.03 3.79
121 122 2.843401 TCGAAAGAATCCAACCCGAA 57.157 45.000 0.00 0.00 37.03 4.30
134 135 5.158101 TGAAGAGTAGCGTAGATCGAAAG 57.842 43.478 0.00 0.00 42.86 2.62
135 136 5.558463 CGATGAAGAGTAGCGTAGATCGAAA 60.558 44.000 0.00 0.00 42.86 3.46
136 137 4.084485 CGATGAAGAGTAGCGTAGATCGAA 60.084 45.833 0.00 0.00 42.86 3.71
137 138 3.429207 CGATGAAGAGTAGCGTAGATCGA 59.571 47.826 0.00 0.00 42.86 3.59
138 139 3.423776 CCGATGAAGAGTAGCGTAGATCG 60.424 52.174 0.00 0.00 43.12 3.69
139 140 3.668491 GCCGATGAAGAGTAGCGTAGATC 60.668 52.174 0.00 0.00 0.00 2.75
140 141 2.226912 GCCGATGAAGAGTAGCGTAGAT 59.773 50.000 0.00 0.00 0.00 1.98
141 142 1.602851 GCCGATGAAGAGTAGCGTAGA 59.397 52.381 0.00 0.00 0.00 2.59
142 143 1.660614 CGCCGATGAAGAGTAGCGTAG 60.661 57.143 0.00 0.00 38.81 3.51
143 144 0.306840 CGCCGATGAAGAGTAGCGTA 59.693 55.000 0.00 0.00 38.81 4.42
144 145 1.064296 CGCCGATGAAGAGTAGCGT 59.936 57.895 0.00 0.00 38.81 5.07
145 146 1.658717 CCGCCGATGAAGAGTAGCG 60.659 63.158 0.00 0.00 42.99 4.26
146 147 1.951631 GCCGCCGATGAAGAGTAGC 60.952 63.158 0.00 0.00 0.00 3.58
147 148 1.658717 CGCCGCCGATGAAGAGTAG 60.659 63.158 0.00 0.00 36.29 2.57
148 149 2.411701 CGCCGCCGATGAAGAGTA 59.588 61.111 0.00 0.00 36.29 2.59
149 150 4.514577 CCGCCGCCGATGAAGAGT 62.515 66.667 0.00 0.00 36.29 3.24
150 151 4.514577 ACCGCCGCCGATGAAGAG 62.515 66.667 0.00 0.00 36.29 2.85
151 152 4.077184 AACCGCCGCCGATGAAGA 62.077 61.111 0.00 0.00 36.29 2.87
152 153 3.864686 CAACCGCCGCCGATGAAG 61.865 66.667 0.00 0.00 36.29 3.02
160 161 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
161 162 4.389576 GCAGAACAGCAACCGCCG 62.390 66.667 0.00 0.00 39.83 6.46
162 163 2.980233 AGCAGAACAGCAACCGCC 60.980 61.111 0.00 0.00 39.83 6.13
163 164 2.253452 CAGCAGAACAGCAACCGC 59.747 61.111 0.00 0.00 36.85 5.68
164 165 2.253452 GCAGCAGAACAGCAACCG 59.747 61.111 0.00 0.00 36.85 4.44
165 166 2.253452 CGCAGCAGAACAGCAACC 59.747 61.111 0.00 0.00 36.85 3.77
178 179 2.109799 CCCATAGGACCAGCGCAG 59.890 66.667 11.47 0.00 33.47 5.18
179 180 3.479203 CCCCATAGGACCAGCGCA 61.479 66.667 11.47 0.00 38.24 6.09
180 181 4.937431 GCCCCATAGGACCAGCGC 62.937 72.222 0.00 0.00 38.24 5.92
181 182 4.256180 GGCCCCATAGGACCAGCG 62.256 72.222 0.00 0.00 37.96 5.18
187 188 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
188 189 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
189 190 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
190 191 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
191 192 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
192 193 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
193 194 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
194 195 2.508663 GTCGTCGTGCTAAGGCCC 60.509 66.667 0.00 0.00 37.74 5.80
195 196 2.508663 GGTCGTCGTGCTAAGGCC 60.509 66.667 0.00 0.00 37.74 5.19
196 197 1.516603 GAGGTCGTCGTGCTAAGGC 60.517 63.158 0.00 0.00 39.26 4.35
197 198 1.139095 GGAGGTCGTCGTGCTAAGG 59.861 63.158 0.00 0.00 0.00 2.69
198 199 1.139095 GGGAGGTCGTCGTGCTAAG 59.861 63.158 0.00 0.00 0.00 2.18
199 200 2.693762 CGGGAGGTCGTCGTGCTAA 61.694 63.158 0.00 0.00 0.00 3.09
200 201 3.129502 CGGGAGGTCGTCGTGCTA 61.130 66.667 0.00 0.00 0.00 3.49
202 203 4.773117 GTCGGGAGGTCGTCGTGC 62.773 72.222 0.00 0.00 0.00 5.34
203 204 3.054503 AGTCGGGAGGTCGTCGTG 61.055 66.667 0.00 0.00 0.00 4.35
204 205 3.054503 CAGTCGGGAGGTCGTCGT 61.055 66.667 0.00 0.00 0.00 4.34
205 206 3.036783 GACAGTCGGGAGGTCGTCG 62.037 68.421 0.00 0.00 0.00 5.12
206 207 0.392193 TAGACAGTCGGGAGGTCGTC 60.392 60.000 0.00 0.00 36.68 4.20
207 208 0.676151 GTAGACAGTCGGGAGGTCGT 60.676 60.000 0.00 0.00 36.68 4.34
208 209 0.392729 AGTAGACAGTCGGGAGGTCG 60.393 60.000 0.00 0.00 36.68 4.79
209 210 2.287769 GTAGTAGACAGTCGGGAGGTC 58.712 57.143 0.00 0.00 0.00 3.85
210 211 1.632409 TGTAGTAGACAGTCGGGAGGT 59.368 52.381 0.00 0.00 32.86 3.85
211 212 2.414994 TGTAGTAGACAGTCGGGAGG 57.585 55.000 0.00 0.00 32.86 4.30
212 213 3.079578 TGTTGTAGTAGACAGTCGGGAG 58.920 50.000 0.00 0.00 39.88 4.30
213 214 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
214 215 3.255149 ACTTGTTGTAGTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
215 216 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
216 217 6.637365 CAAAACTTGTTGTAGTAGACAGTCG 58.363 40.000 0.00 0.00 39.88 4.18
217 218 6.419771 GCAAAACTTGTTGTAGTAGACAGTC 58.580 40.000 0.00 0.00 39.88 3.51
218 219 5.296035 GGCAAAACTTGTTGTAGTAGACAGT 59.704 40.000 0.00 0.00 39.88 3.55
219 220 5.277828 GGGCAAAACTTGTTGTAGTAGACAG 60.278 44.000 0.00 0.00 39.88 3.51
220 221 4.577283 GGGCAAAACTTGTTGTAGTAGACA 59.423 41.667 0.00 0.00 35.78 3.41
221 222 4.319261 CGGGCAAAACTTGTTGTAGTAGAC 60.319 45.833 0.00 0.00 0.00 2.59
222 223 3.810941 CGGGCAAAACTTGTTGTAGTAGA 59.189 43.478 0.00 0.00 0.00 2.59
223 224 3.058501 CCGGGCAAAACTTGTTGTAGTAG 60.059 47.826 0.00 0.00 0.00 2.57
224 225 2.879646 CCGGGCAAAACTTGTTGTAGTA 59.120 45.455 0.00 0.00 0.00 1.82
225 226 1.679153 CCGGGCAAAACTTGTTGTAGT 59.321 47.619 0.00 0.00 0.00 2.73
226 227 1.601914 GCCGGGCAAAACTTGTTGTAG 60.602 52.381 15.62 0.00 0.00 2.74
227 228 0.386113 GCCGGGCAAAACTTGTTGTA 59.614 50.000 15.62 0.00 0.00 2.41
228 229 1.142965 GCCGGGCAAAACTTGTTGT 59.857 52.632 15.62 0.00 0.00 3.32
229 230 0.597377 GAGCCGGGCAAAACTTGTTG 60.597 55.000 23.09 0.00 0.00 3.33
230 231 1.739667 GAGCCGGGCAAAACTTGTT 59.260 52.632 23.09 0.00 0.00 2.83
231 232 2.200337 GGAGCCGGGCAAAACTTGT 61.200 57.895 23.09 0.00 0.00 3.16
232 233 2.650778 GGAGCCGGGCAAAACTTG 59.349 61.111 23.09 0.00 0.00 3.16
233 234 2.983592 CGGAGCCGGGCAAAACTT 60.984 61.111 23.09 0.00 35.56 2.66
250 251 4.918201 CATCGCCCCTCCTTCGCC 62.918 72.222 0.00 0.00 0.00 5.54
251 252 3.849951 TCATCGCCCCTCCTTCGC 61.850 66.667 0.00 0.00 0.00 4.70
252 253 2.107141 GTCATCGCCCCTCCTTCG 59.893 66.667 0.00 0.00 0.00 3.79
253 254 2.107141 CGTCATCGCCCCTCCTTC 59.893 66.667 0.00 0.00 0.00 3.46
254 255 3.470888 CCGTCATCGCCCCTCCTT 61.471 66.667 0.00 0.00 35.54 3.36
280 281 0.798776 AACATTGAAGCGAGCCGAAG 59.201 50.000 0.00 0.00 0.00 3.79
281 282 1.069296 CAAACATTGAAGCGAGCCGAA 60.069 47.619 0.00 0.00 0.00 4.30
282 283 0.516877 CAAACATTGAAGCGAGCCGA 59.483 50.000 0.00 0.00 0.00 5.54
283 284 0.238289 ACAAACATTGAAGCGAGCCG 59.762 50.000 0.00 0.00 0.00 5.52
284 285 2.484264 ACTACAAACATTGAAGCGAGCC 59.516 45.455 0.00 0.00 0.00 4.70
285 286 3.722082 CGACTACAAACATTGAAGCGAGC 60.722 47.826 0.00 0.00 0.00 5.03
286 287 3.428870 ACGACTACAAACATTGAAGCGAG 59.571 43.478 0.00 0.00 0.00 5.03
287 288 3.386486 ACGACTACAAACATTGAAGCGA 58.614 40.909 0.00 0.00 0.00 4.93
288 289 3.718036 CGACGACTACAAACATTGAAGCG 60.718 47.826 0.00 0.00 0.00 4.68
289 290 3.722123 CGACGACTACAAACATTGAAGC 58.278 45.455 0.00 0.00 0.00 3.86
290 291 3.428870 AGCGACGACTACAAACATTGAAG 59.571 43.478 0.00 0.00 0.00 3.02
291 292 3.386486 AGCGACGACTACAAACATTGAA 58.614 40.909 0.00 0.00 0.00 2.69
292 293 3.021269 AGCGACGACTACAAACATTGA 57.979 42.857 0.00 0.00 0.00 2.57
293 294 3.303495 CCTAGCGACGACTACAAACATTG 59.697 47.826 0.00 0.00 0.00 2.82
294 295 3.057033 ACCTAGCGACGACTACAAACATT 60.057 43.478 0.00 0.00 0.00 2.71
295 296 2.490903 ACCTAGCGACGACTACAAACAT 59.509 45.455 0.00 0.00 0.00 2.71
296 297 1.881973 ACCTAGCGACGACTACAAACA 59.118 47.619 0.00 0.00 0.00 2.83
297 298 2.248487 CACCTAGCGACGACTACAAAC 58.752 52.381 0.00 0.00 0.00 2.93
298 299 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
299 300 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
300 301 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
301 302 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
302 303 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
303 304 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
304 305 1.002684 CATAGACCACCTAGCGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
305 306 1.306148 CATAGACCACCTAGCGACGA 58.694 55.000 0.00 0.00 0.00 4.20
306 307 0.311165 CCATAGACCACCTAGCGACG 59.689 60.000 0.00 0.00 0.00 5.12
307 308 1.688772 TCCATAGACCACCTAGCGAC 58.311 55.000 0.00 0.00 0.00 5.19
308 309 2.108425 AGATCCATAGACCACCTAGCGA 59.892 50.000 0.00 0.00 0.00 4.93
309 310 2.520069 AGATCCATAGACCACCTAGCG 58.480 52.381 0.00 0.00 0.00 4.26
310 311 4.924625 TCTAGATCCATAGACCACCTAGC 58.075 47.826 0.00 0.00 0.00 3.42
311 312 6.489603 ACATCTAGATCCATAGACCACCTAG 58.510 44.000 1.03 0.00 34.68 3.02
312 313 6.470456 ACATCTAGATCCATAGACCACCTA 57.530 41.667 1.03 0.00 34.68 3.08
313 314 5.346782 ACATCTAGATCCATAGACCACCT 57.653 43.478 1.03 0.00 34.68 4.00
314 315 7.726033 ATTACATCTAGATCCATAGACCACC 57.274 40.000 1.03 0.00 34.68 4.61
344 345 9.237187 TGGCAATACAATGAACACTAGAAATAA 57.763 29.630 0.00 0.00 0.00 1.40
345 346 8.800370 TGGCAATACAATGAACACTAGAAATA 57.200 30.769 0.00 0.00 0.00 1.40
346 347 7.701539 TGGCAATACAATGAACACTAGAAAT 57.298 32.000 0.00 0.00 0.00 2.17
347 348 7.392953 TCATGGCAATACAATGAACACTAGAAA 59.607 33.333 0.00 0.00 0.00 2.52
348 349 6.883756 TCATGGCAATACAATGAACACTAGAA 59.116 34.615 0.00 0.00 0.00 2.10
349 350 6.413892 TCATGGCAATACAATGAACACTAGA 58.586 36.000 0.00 0.00 0.00 2.43
350 351 6.682423 TCATGGCAATACAATGAACACTAG 57.318 37.500 0.00 0.00 0.00 2.57
351 352 7.338957 TCAATCATGGCAATACAATGAACACTA 59.661 33.333 0.00 0.00 0.00 2.74
352 353 6.153170 TCAATCATGGCAATACAATGAACACT 59.847 34.615 0.00 0.00 0.00 3.55
353 354 6.331845 TCAATCATGGCAATACAATGAACAC 58.668 36.000 0.00 0.00 0.00 3.32
354 355 6.527057 TCAATCATGGCAATACAATGAACA 57.473 33.333 0.00 0.00 0.00 3.18
355 356 7.259882 TCTTCAATCATGGCAATACAATGAAC 58.740 34.615 0.00 0.00 0.00 3.18
356 357 7.407393 TCTTCAATCATGGCAATACAATGAA 57.593 32.000 0.00 0.00 0.00 2.57
357 358 7.285858 TCATCTTCAATCATGGCAATACAATGA 59.714 33.333 0.00 0.00 0.00 2.57
358 359 7.430441 TCATCTTCAATCATGGCAATACAATG 58.570 34.615 0.00 0.00 0.00 2.82
359 360 7.591421 TCATCTTCAATCATGGCAATACAAT 57.409 32.000 0.00 0.00 0.00 2.71
360 361 7.407393 TTCATCTTCAATCATGGCAATACAA 57.593 32.000 0.00 0.00 0.00 2.41
361 362 7.591421 ATTCATCTTCAATCATGGCAATACA 57.409 32.000 0.00 0.00 0.00 2.29
362 363 9.006839 TCTATTCATCTTCAATCATGGCAATAC 57.993 33.333 0.00 0.00 0.00 1.89
363 364 9.749340 ATCTATTCATCTTCAATCATGGCAATA 57.251 29.630 0.00 0.00 0.00 1.90
364 365 8.651589 ATCTATTCATCTTCAATCATGGCAAT 57.348 30.769 0.00 0.00 0.00 3.56
365 366 8.357402 CAATCTATTCATCTTCAATCATGGCAA 58.643 33.333 0.00 0.00 0.00 4.52
366 367 7.722285 TCAATCTATTCATCTTCAATCATGGCA 59.278 33.333 0.00 0.00 0.00 4.92
367 368 8.107399 TCAATCTATTCATCTTCAATCATGGC 57.893 34.615 0.00 0.00 0.00 4.40
412 413 5.940470 GGACAGTGATCTCCTGTATGTTTTT 59.060 40.000 15.63 0.00 43.00 1.94
413 414 5.249393 AGGACAGTGATCTCCTGTATGTTTT 59.751 40.000 15.63 0.00 43.00 2.43
414 415 4.780021 AGGACAGTGATCTCCTGTATGTTT 59.220 41.667 15.63 0.00 43.00 2.83
415 416 4.357325 AGGACAGTGATCTCCTGTATGTT 58.643 43.478 15.63 3.37 43.00 2.71
416 417 3.987745 AGGACAGTGATCTCCTGTATGT 58.012 45.455 15.63 3.13 43.00 2.29
417 418 4.522405 CCTAGGACAGTGATCTCCTGTATG 59.478 50.000 15.63 8.38 43.00 2.39
418 419 4.735369 CCTAGGACAGTGATCTCCTGTAT 58.265 47.826 15.63 11.28 43.00 2.29
419 420 3.688702 GCCTAGGACAGTGATCTCCTGTA 60.689 52.174 14.75 3.74 43.00 2.74
420 421 2.952702 GCCTAGGACAGTGATCTCCTGT 60.953 54.545 14.75 15.59 45.52 4.00
421 422 1.686052 GCCTAGGACAGTGATCTCCTG 59.314 57.143 14.75 10.51 34.06 3.86
422 423 1.573376 AGCCTAGGACAGTGATCTCCT 59.427 52.381 14.75 6.49 36.45 3.69
423 424 2.080654 AGCCTAGGACAGTGATCTCC 57.919 55.000 14.75 0.00 0.00 3.71
424 425 2.102252 CCAAGCCTAGGACAGTGATCTC 59.898 54.545 14.75 0.00 0.00 2.75
425 426 2.114616 CCAAGCCTAGGACAGTGATCT 58.885 52.381 14.75 0.00 0.00 2.75
426 427 2.111384 TCCAAGCCTAGGACAGTGATC 58.889 52.381 14.75 0.00 0.00 2.92
427 428 2.254152 TCCAAGCCTAGGACAGTGAT 57.746 50.000 14.75 0.00 0.00 3.06
428 429 2.024176 TTCCAAGCCTAGGACAGTGA 57.976 50.000 14.75 0.00 34.19 3.41
429 430 2.814336 GTTTTCCAAGCCTAGGACAGTG 59.186 50.000 14.75 3.68 34.19 3.66
430 431 2.711547 AGTTTTCCAAGCCTAGGACAGT 59.288 45.455 14.75 0.00 34.19 3.55
431 432 3.425162 AGTTTTCCAAGCCTAGGACAG 57.575 47.619 14.75 0.00 34.19 3.51
432 433 3.876309 AAGTTTTCCAAGCCTAGGACA 57.124 42.857 14.75 0.00 34.19 4.02
433 434 4.008330 GGTAAGTTTTCCAAGCCTAGGAC 58.992 47.826 14.75 3.76 34.19 3.85
434 435 3.653836 TGGTAAGTTTTCCAAGCCTAGGA 59.346 43.478 14.75 0.00 0.00 2.94
435 436 4.010349 CTGGTAAGTTTTCCAAGCCTAGG 58.990 47.826 3.67 3.67 33.06 3.02
436 437 4.906618 TCTGGTAAGTTTTCCAAGCCTAG 58.093 43.478 2.05 0.00 33.06 3.02
437 438 4.986054 TCTGGTAAGTTTTCCAAGCCTA 57.014 40.909 2.05 0.00 33.06 3.93
438 439 3.876309 TCTGGTAAGTTTTCCAAGCCT 57.124 42.857 2.05 0.00 33.06 4.58
439 440 4.767409 AGAATCTGGTAAGTTTTCCAAGCC 59.233 41.667 2.05 0.00 33.06 4.35
440 441 5.966742 AGAATCTGGTAAGTTTTCCAAGC 57.033 39.130 2.05 0.00 33.06 4.01
450 451 9.968870 GGAGTACAAGTTATAGAATCTGGTAAG 57.031 37.037 0.00 0.00 0.00 2.34
451 452 8.921205 GGGAGTACAAGTTATAGAATCTGGTAA 58.079 37.037 0.00 0.00 0.00 2.85
452 453 8.287350 AGGGAGTACAAGTTATAGAATCTGGTA 58.713 37.037 0.00 0.00 0.00 3.25
453 454 7.133483 AGGGAGTACAAGTTATAGAATCTGGT 58.867 38.462 0.00 0.00 0.00 4.00
454 455 7.256012 GGAGGGAGTACAAGTTATAGAATCTGG 60.256 44.444 0.00 0.00 0.00 3.86
455 456 7.522399 CGGAGGGAGTACAAGTTATAGAATCTG 60.522 44.444 0.00 0.00 0.00 2.90
456 457 6.490721 CGGAGGGAGTACAAGTTATAGAATCT 59.509 42.308 0.00 0.00 0.00 2.40
457 458 6.264970 ACGGAGGGAGTACAAGTTATAGAATC 59.735 42.308 0.00 0.00 0.00 2.52
458 459 6.134754 ACGGAGGGAGTACAAGTTATAGAAT 58.865 40.000 0.00 0.00 0.00 2.40
459 460 5.513233 ACGGAGGGAGTACAAGTTATAGAA 58.487 41.667 0.00 0.00 0.00 2.10
460 461 5.121380 ACGGAGGGAGTACAAGTTATAGA 57.879 43.478 0.00 0.00 0.00 1.98
461 462 4.277921 GGACGGAGGGAGTACAAGTTATAG 59.722 50.000 0.00 0.00 0.00 1.31
462 463 4.079558 AGGACGGAGGGAGTACAAGTTATA 60.080 45.833 0.00 0.00 0.00 0.98
463 464 3.029570 GGACGGAGGGAGTACAAGTTAT 58.970 50.000 0.00 0.00 0.00 1.89
464 465 2.042162 AGGACGGAGGGAGTACAAGTTA 59.958 50.000 0.00 0.00 0.00 2.24
465 466 1.203149 AGGACGGAGGGAGTACAAGTT 60.203 52.381 0.00 0.00 0.00 2.66
466 467 0.408700 AGGACGGAGGGAGTACAAGT 59.591 55.000 0.00 0.00 0.00 3.16
467 468 2.431954 TAGGACGGAGGGAGTACAAG 57.568 55.000 0.00 0.00 0.00 3.16
468 469 2.905415 TTAGGACGGAGGGAGTACAA 57.095 50.000 0.00 0.00 0.00 2.41
469 470 2.905415 TTTAGGACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
470 471 4.405036 AGAATTTTAGGACGGAGGGAGTAC 59.595 45.833 0.00 0.00 0.00 2.73
471 472 4.617593 AGAATTTTAGGACGGAGGGAGTA 58.382 43.478 0.00 0.00 0.00 2.59
472 473 3.451890 AGAATTTTAGGACGGAGGGAGT 58.548 45.455 0.00 0.00 0.00 3.85
473 474 4.192317 CAAGAATTTTAGGACGGAGGGAG 58.808 47.826 0.00 0.00 0.00 4.30
474 475 3.585732 ACAAGAATTTTAGGACGGAGGGA 59.414 43.478 0.00 0.00 0.00 4.20
475 476 3.951663 ACAAGAATTTTAGGACGGAGGG 58.048 45.455 0.00 0.00 0.00 4.30
476 477 5.959618 AAACAAGAATTTTAGGACGGAGG 57.040 39.130 0.00 0.00 0.00 4.30
477 478 8.319143 TCTAAAACAAGAATTTTAGGACGGAG 57.681 34.615 14.74 0.00 45.87 4.63
478 479 8.857694 ATCTAAAACAAGAATTTTAGGACGGA 57.142 30.769 14.74 0.81 45.87 4.69
479 480 9.908152 AAATCTAAAACAAGAATTTTAGGACGG 57.092 29.630 14.74 0.00 45.87 4.79
559 560 9.546428 CCCAAAATTCTTGTTTTAGATTTGTCT 57.454 29.630 0.00 0.00 28.79 3.41
560 561 9.541143 TCCCAAAATTCTTGTTTTAGATTTGTC 57.459 29.630 0.00 0.00 28.79 3.18
561 562 9.325198 GTCCCAAAATTCTTGTTTTAGATTTGT 57.675 29.630 0.00 0.00 28.79 2.83
562 563 8.487176 CGTCCCAAAATTCTTGTTTTAGATTTG 58.513 33.333 0.00 0.00 30.56 2.32
563 564 7.655732 CCGTCCCAAAATTCTTGTTTTAGATTT 59.344 33.333 0.00 0.00 30.56 2.17
564 565 7.014808 TCCGTCCCAAAATTCTTGTTTTAGATT 59.985 33.333 0.00 0.00 30.56 2.40
565 566 6.492087 TCCGTCCCAAAATTCTTGTTTTAGAT 59.508 34.615 0.00 0.00 30.56 1.98
566 567 5.828859 TCCGTCCCAAAATTCTTGTTTTAGA 59.171 36.000 0.00 0.00 30.56 2.10
567 568 6.079424 TCCGTCCCAAAATTCTTGTTTTAG 57.921 37.500 0.00 0.00 30.56 1.85
568 569 5.010213 CCTCCGTCCCAAAATTCTTGTTTTA 59.990 40.000 0.00 0.00 30.56 1.52
569 570 4.202212 CCTCCGTCCCAAAATTCTTGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
570 571 3.320826 CCTCCGTCCCAAAATTCTTGTTT 59.679 43.478 0.00 0.00 0.00 2.83
571 572 2.890945 CCTCCGTCCCAAAATTCTTGTT 59.109 45.455 0.00 0.00 0.00 2.83
572 573 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
573 574 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
574 575 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
575 576 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
576 577 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
577 578 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
578 579 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
579 580 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
580 581 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
581 582 1.557832 CAAATACTCCCTCCGTCCCAA 59.442 52.381 0.00 0.00 0.00 4.12
582 583 1.200519 CAAATACTCCCTCCGTCCCA 58.799 55.000 0.00 0.00 0.00 4.37
583 584 1.492764 TCAAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
584 585 4.527038 TCATATCAAATACTCCCTCCGTCC 59.473 45.833 0.00 0.00 0.00 4.79
585 586 5.723672 TCATATCAAATACTCCCTCCGTC 57.276 43.478 0.00 0.00 0.00 4.79
586 587 6.688073 ATTCATATCAAATACTCCCTCCGT 57.312 37.500 0.00 0.00 0.00 4.69
587 588 7.611770 TGTATTCATATCAAATACTCCCTCCG 58.388 38.462 14.31 0.00 39.34 4.63
588 589 8.043710 CCTGTATTCATATCAAATACTCCCTCC 58.956 40.741 14.31 0.00 39.34 4.30
589 590 8.043710 CCCTGTATTCATATCAAATACTCCCTC 58.956 40.741 14.31 0.00 39.34 4.30
590 591 7.517604 ACCCTGTATTCATATCAAATACTCCCT 59.482 37.037 14.31 0.00 39.34 4.20
591 592 7.607991 CACCCTGTATTCATATCAAATACTCCC 59.392 40.741 14.31 0.00 39.34 4.30
592 593 7.119846 GCACCCTGTATTCATATCAAATACTCC 59.880 40.741 14.31 0.00 39.34 3.85
593 594 7.661437 TGCACCCTGTATTCATATCAAATACTC 59.339 37.037 14.31 0.00 39.34 2.59
594 595 7.517320 TGCACCCTGTATTCATATCAAATACT 58.483 34.615 14.31 0.00 39.34 2.12
595 596 7.744087 TGCACCCTGTATTCATATCAAATAC 57.256 36.000 9.26 9.26 39.15 1.89
596 597 7.448161 CCTTGCACCCTGTATTCATATCAAATA 59.552 37.037 0.00 0.00 0.00 1.40
597 598 6.266103 CCTTGCACCCTGTATTCATATCAAAT 59.734 38.462 0.00 0.00 0.00 2.32
598 599 5.593909 CCTTGCACCCTGTATTCATATCAAA 59.406 40.000 0.00 0.00 0.00 2.69
599 600 5.132502 CCTTGCACCCTGTATTCATATCAA 58.867 41.667 0.00 0.00 0.00 2.57
600 601 4.717877 CCTTGCACCCTGTATTCATATCA 58.282 43.478 0.00 0.00 0.00 2.15
601 602 3.503748 GCCTTGCACCCTGTATTCATATC 59.496 47.826 0.00 0.00 0.00 1.63
602 603 3.117550 TGCCTTGCACCCTGTATTCATAT 60.118 43.478 0.00 0.00 31.71 1.78
616 617 1.672030 CACCACGAGATGCCTTGCA 60.672 57.895 0.00 0.00 44.86 4.08
650 652 5.297278 GGTATACCAAGTTCACACACACAAA 59.703 40.000 17.44 0.00 35.64 2.83
657 659 4.546829 TCAGGGTATACCAAGTTCACAC 57.453 45.455 23.33 2.73 43.89 3.82
670 676 4.498493 ACCCAAAACCAAAATCAGGGTAT 58.502 39.130 0.00 0.00 45.74 2.73
703 709 2.123589 TGTCCCCTGTTCTGACTGAAA 58.876 47.619 0.00 0.00 36.30 2.69
704 710 1.416401 GTGTCCCCTGTTCTGACTGAA 59.584 52.381 0.00 0.00 0.00 3.02
705 711 1.048601 GTGTCCCCTGTTCTGACTGA 58.951 55.000 0.00 0.00 0.00 3.41
832 841 1.270305 CCCACTTGTCACTGACGACAT 60.270 52.381 4.71 0.00 45.03 3.06
835 844 1.745890 CCCCACTTGTCACTGACGA 59.254 57.895 4.71 1.85 34.95 4.20
869 878 2.432628 GGACACGCGAAGACCAGG 60.433 66.667 15.93 0.00 0.00 4.45
1303 1325 3.900601 GAGGAGATCTAGCAAGGGATCAA 59.099 47.826 0.00 0.00 40.32 2.57
1304 1326 3.141838 AGAGGAGATCTAGCAAGGGATCA 59.858 47.826 0.00 0.00 40.32 2.92
1305 1327 3.511146 CAGAGGAGATCTAGCAAGGGATC 59.489 52.174 0.00 0.00 36.10 3.36
1306 1328 3.509442 CAGAGGAGATCTAGCAAGGGAT 58.491 50.000 0.00 0.00 36.10 3.85
1339 1361 2.520982 AGTAGCAGCGGCCGGATA 60.521 61.111 29.38 11.66 42.56 2.59
1559 1642 5.749596 TCGGAAAATACATGCATTTCGAT 57.250 34.783 4.36 0.00 34.63 3.59
1660 1748 2.953648 TGCATTTGGATACTCATGCTGG 59.046 45.455 11.76 0.00 46.69 4.85
1677 1765 6.211515 CAGCTAAACTCTTTTCTTGTTGCAT 58.788 36.000 0.00 0.00 0.00 3.96
2042 2131 5.440610 GCCATCTCCTCTTTTTCCTCAATA 58.559 41.667 0.00 0.00 0.00 1.90
2176 2265 2.428901 TCCCCTTCCCTTTTGTCTCTT 58.571 47.619 0.00 0.00 0.00 2.85
2335 2440 1.556451 TCTTGCTATGAGCTGGCTTCA 59.444 47.619 0.00 0.00 42.97 3.02
2343 2448 3.391965 CAGTGATCCTCTTGCTATGAGC 58.608 50.000 0.00 0.00 42.82 4.26
2605 2710 1.972640 CATCGTCGTAGCTAGCGATTG 59.027 52.381 19.00 14.80 41.35 2.67
2606 2711 1.069159 CCATCGTCGTAGCTAGCGATT 60.069 52.381 19.00 0.00 41.35 3.34
2613 2718 2.105128 GCTGCCATCGTCGTAGCT 59.895 61.111 0.00 0.00 0.00 3.32
2626 2731 0.368227 CGAGTCTTCATCGTTGCTGC 59.632 55.000 0.00 0.00 35.48 5.25
2632 2737 0.171455 GTCAGGCGAGTCTTCATCGT 59.829 55.000 0.00 0.00 42.13 3.73
2685 2790 1.834263 CTTCCCCCTCTTCTTCGATGT 59.166 52.381 0.00 0.00 0.00 3.06
2807 2918 5.971202 CCACAGTTAAAAAGCAGTACAACAG 59.029 40.000 0.00 0.00 0.00 3.16
2845 2964 7.793927 ACATGGAACTCTTTTAATAGCTAGC 57.206 36.000 6.62 6.62 0.00 3.42
2858 2977 6.723298 CTCTATTGGAGTACATGGAACTCT 57.277 41.667 22.41 11.09 42.48 3.24
2871 2990 7.782897 TGGAGTATATGGAACTCTATTGGAG 57.217 40.000 4.53 0.00 46.87 3.86
2872 2991 8.742125 ATTGGAGTATATGGAACTCTATTGGA 57.258 34.615 4.53 0.00 42.48 3.53
2915 3034 2.947652 CCCATCACAATGATCAGACACC 59.052 50.000 0.09 0.00 34.28 4.16
2916 3035 2.357009 GCCCATCACAATGATCAGACAC 59.643 50.000 0.09 0.00 34.28 3.67
2917 3036 2.646930 GCCCATCACAATGATCAGACA 58.353 47.619 0.09 0.00 34.28 3.41
2918 3037 1.600957 CGCCCATCACAATGATCAGAC 59.399 52.381 0.09 0.00 34.28 3.51
2919 3038 1.485895 TCGCCCATCACAATGATCAGA 59.514 47.619 0.09 0.00 34.28 3.27
2920 3039 1.957668 TCGCCCATCACAATGATCAG 58.042 50.000 0.09 0.00 34.28 2.90
2923 3042 3.025978 ACATTTCGCCCATCACAATGAT 58.974 40.909 0.00 0.00 37.65 2.45
2940 3063 5.300792 ACTCACGGTAAAAATTGACCACATT 59.699 36.000 0.71 0.00 35.26 2.71
2944 3067 3.566322 CCACTCACGGTAAAAATTGACCA 59.434 43.478 0.71 0.00 35.26 4.02
2963 3086 7.066505 CCGCACAAAATAAACAAATAAACCAC 58.933 34.615 0.00 0.00 0.00 4.16
2987 3110 1.476488 ACGCAATTCCATAAACCAGCC 59.524 47.619 0.00 0.00 0.00 4.85
2989 3112 4.036734 AGCATACGCAATTCCATAAACCAG 59.963 41.667 0.00 0.00 42.27 4.00
2991 3114 4.568152 AGCATACGCAATTCCATAAACC 57.432 40.909 0.00 0.00 42.27 3.27
3026 3149 7.111247 ACCACATTCTTTCATCAGTTTTCAA 57.889 32.000 0.00 0.00 0.00 2.69
3053 3176 1.444553 GTCTGTCTCGTTGAGCCGG 60.445 63.158 0.00 0.00 0.00 6.13
3054 3177 1.797933 CGTCTGTCTCGTTGAGCCG 60.798 63.158 0.00 0.00 0.00 5.52
3062 3185 4.436998 GGTGGGGCGTCTGTCTCG 62.437 72.222 0.00 0.00 0.00 4.04
3068 3191 3.322466 CTGGAAGGTGGGGCGTCT 61.322 66.667 0.00 0.00 0.00 4.18
3210 3333 5.864418 AAATAAGGTATAGAGTGTCGCCA 57.136 39.130 0.00 0.00 0.00 5.69
3235 3361 0.395862 TTGAGGCCGGGTTGTTTGAA 60.396 50.000 2.18 0.00 0.00 2.69
3236 3362 0.395862 TTTGAGGCCGGGTTGTTTGA 60.396 50.000 2.18 0.00 0.00 2.69
3362 3488 7.043961 AGATGATGAAGATGTCGTAGCTAAA 57.956 36.000 0.00 0.00 0.00 1.85
3381 3507 3.054139 ACCTGCCTTTTCATGCTAGATGA 60.054 43.478 0.00 0.00 0.00 2.92
3426 3552 3.243501 GCTCTTTGGATTGTTTGTGAGCA 60.244 43.478 0.00 0.00 43.33 4.26
3445 3571 9.574458 TTTCGATTGATATGTTATAGCTAGCTC 57.426 33.333 23.26 7.43 0.00 4.09
3455 3581 9.226606 ACCTGTTTCTTTTCGATTGATATGTTA 57.773 29.630 0.00 0.00 0.00 2.41
3456 3582 8.023128 CACCTGTTTCTTTTCGATTGATATGTT 58.977 33.333 0.00 0.00 0.00 2.71
3458 3584 7.751732 TCACCTGTTTCTTTTCGATTGATATG 58.248 34.615 0.00 0.00 0.00 1.78
3460 3586 7.737972 TTCACCTGTTTCTTTTCGATTGATA 57.262 32.000 0.00 0.00 0.00 2.15
3513 3650 4.649674 CAGGCTATGGGTACTTACTTCAGA 59.350 45.833 0.00 0.00 0.00 3.27
3523 3660 3.470645 AAACGATCAGGCTATGGGTAC 57.529 47.619 0.00 0.00 0.00 3.34
3527 3664 3.111853 TGCTAAACGATCAGGCTATGG 57.888 47.619 0.00 0.00 0.00 2.74
3549 3686 0.177604 GCTGAGAGAGGGTCCATGTG 59.822 60.000 0.00 0.00 0.00 3.21
3570 3707 1.960193 AATGGGATGGCCGGGGATTT 61.960 55.000 2.18 0.00 33.83 2.17
3719 3856 0.106569 TACGAATAGCCGAGTCCCCA 60.107 55.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.