Multiple sequence alignment - TraesCS5D01G510200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G510200 chr5D 100.000 7576 0 0 1 7576 535130155 535137730 0.000000e+00 13991.0
1 TraesCS5D01G510200 chr5D 92.050 239 16 3 3790 4027 127881830 127882066 4.380000e-87 333.0
2 TraesCS5D01G510200 chr5D 82.906 351 35 17 1153 1501 341436094 341436421 7.440000e-75 292.0
3 TraesCS5D01G510200 chr5D 88.732 142 9 2 1363 1501 341436420 341436557 4.700000e-37 167.0
4 TraesCS5D01G510200 chr5D 91.057 123 11 0 3402 3524 535133442 535133564 4.700000e-37 167.0
5 TraesCS5D01G510200 chr5D 91.057 123 11 0 3288 3410 535133556 535133678 4.700000e-37 167.0
6 TraesCS5D01G510200 chr5D 89.412 85 8 1 5103 5187 127882609 127882692 1.040000e-18 106.0
7 TraesCS5D01G510200 chr5D 94.737 57 2 1 4659 4715 127882300 127882355 3.770000e-13 87.9
8 TraesCS5D01G510200 chr5B 97.739 2167 47 2 1625 3790 675883982 675886147 0.000000e+00 3729.0
9 TraesCS5D01G510200 chr5B 95.441 1316 46 6 4755 6060 675887747 675889058 0.000000e+00 2085.0
10 TraesCS5D01G510200 chr5B 97.626 969 21 2 3790 4756 675886550 675887518 0.000000e+00 1661.0
11 TraesCS5D01G510200 chr5B 91.000 800 48 12 6105 6891 675889060 675889848 0.000000e+00 1057.0
12 TraesCS5D01G510200 chr5B 96.401 639 21 2 6939 7576 369601038 369600401 0.000000e+00 1051.0
13 TraesCS5D01G510200 chr5B 92.504 627 35 2 1 615 675882512 675883138 0.000000e+00 887.0
14 TraesCS5D01G510200 chr5B 89.127 607 31 12 698 1279 675883323 675883919 0.000000e+00 723.0
15 TraesCS5D01G510200 chr5B 84.551 356 20 17 1153 1501 655681058 655681385 3.410000e-83 320.0
16 TraesCS5D01G510200 chr5B 87.413 286 19 4 3898 4175 605159827 605159551 5.710000e-81 313.0
17 TraesCS5D01G510200 chr5B 84.397 282 34 6 4485 4756 509469123 509469404 1.250000e-67 268.0
18 TraesCS5D01G510200 chr5B 83.784 296 31 8 3887 4175 232730183 232730468 1.620000e-66 265.0
19 TraesCS5D01G510200 chr5B 94.488 127 7 0 1500 1626 579903364 579903490 6.000000e-46 196.0
20 TraesCS5D01G510200 chr5B 92.683 123 9 0 3402 3524 675885646 675885768 2.170000e-40 178.0
21 TraesCS5D01G510200 chr5B 89.831 118 11 1 3293 3410 675885765 675885881 4.740000e-32 150.0
22 TraesCS5D01G510200 chr5B 94.253 87 2 2 6020 6106 582158220 582158137 6.170000e-26 130.0
23 TraesCS5D01G510200 chr5B 97.619 42 1 0 655 696 675883224 675883265 1.050000e-08 73.1
24 TraesCS5D01G510200 chr4A 92.152 2026 105 14 1786 3790 636654065 636652073 0.000000e+00 2811.0
25 TraesCS5D01G510200 chr4A 94.898 1274 51 6 4755 6021 636648652 636647386 0.000000e+00 1980.0
26 TraesCS5D01G510200 chr4A 97.626 969 21 2 3790 4756 636651658 636650690 0.000000e+00 1661.0
27 TraesCS5D01G510200 chr4A 89.541 784 59 11 719 1501 636655191 636654430 0.000000e+00 972.0
28 TraesCS5D01G510200 chr4A 90.113 708 28 16 1 690 636656137 636655454 0.000000e+00 881.0
29 TraesCS5D01G510200 chr4A 86.044 781 60 24 6104 6847 636647388 636646620 0.000000e+00 793.0
30 TraesCS5D01G510200 chr4A 91.216 148 12 1 1486 1633 236198235 236198089 4.640000e-47 200.0
31 TraesCS5D01G510200 chr4A 91.275 149 10 3 1480 1626 543398348 543398201 4.640000e-47 200.0
32 TraesCS5D01G510200 chr4A 95.402 87 2 1 6020 6106 618462174 618462258 3.690000e-28 137.0
33 TraesCS5D01G510200 chr4A 92.632 95 7 0 3316 3410 636652433 636652339 3.690000e-28 137.0
34 TraesCS5D01G510200 chr4A 93.333 90 4 1 6017 6106 590227923 590228010 1.720000e-26 132.0
35 TraesCS5D01G510200 chr7D 98.901 637 5 2 6941 7576 588168325 588167690 0.000000e+00 1136.0
36 TraesCS5D01G510200 chr7D 98.592 639 7 2 6939 7576 184568891 184569528 0.000000e+00 1129.0
37 TraesCS5D01G510200 chr7D 98.122 639 10 2 6939 7576 32950486 32949849 0.000000e+00 1112.0
38 TraesCS5D01G510200 chr7D 84.262 718 65 17 3887 4601 7729942 7730614 0.000000e+00 656.0
39 TraesCS5D01G510200 chr3D 98.122 639 10 2 6939 7576 566885683 566886320 0.000000e+00 1112.0
40 TraesCS5D01G510200 chr3D 97.806 638 13 1 6939 7576 101556745 101556109 0.000000e+00 1099.0
41 TraesCS5D01G510200 chr3D 90.336 238 20 3 3791 4027 380384009 380383774 7.380000e-80 309.0
42 TraesCS5D01G510200 chr3D 83.989 356 22 17 1153 1501 564092737 564093064 7.380000e-80 309.0
43 TraesCS5D01G510200 chr3D 85.921 277 29 7 4487 4754 380383744 380383469 3.460000e-73 287.0
44 TraesCS5D01G510200 chr3D 88.028 142 10 2 1363 1501 564093063 564093200 2.190000e-35 161.0
45 TraesCS5D01G510200 chr4B 97.027 639 17 2 6939 7576 373775692 373775055 0.000000e+00 1074.0
46 TraesCS5D01G510200 chr4B 92.609 230 15 2 3790 4018 502994015 502994243 5.670000e-86 329.0
47 TraesCS5D01G510200 chr4B 83.784 296 31 8 3887 4175 81211306 81211021 1.620000e-66 265.0
48 TraesCS5D01G510200 chr4B 88.235 85 9 1 5103 5187 502994794 502994877 4.840000e-17 100.0
49 TraesCS5D01G510200 chr4B 96.491 57 1 1 4659 4715 502994486 502994541 8.090000e-15 93.5
50 TraesCS5D01G510200 chr2B 96.714 639 19 2 6939 7576 250700787 250701424 0.000000e+00 1062.0
51 TraesCS5D01G510200 chr7B 96.557 639 20 2 6939 7576 716033972 716033335 0.000000e+00 1057.0
52 TraesCS5D01G510200 chr7B 90.377 239 21 2 3790 4027 374423879 374423642 5.710000e-81 313.0
53 TraesCS5D01G510200 chr7B 83.838 297 30 9 3887 4175 169271449 169271735 4.510000e-67 267.0
54 TraesCS5D01G510200 chr7B 89.103 156 9 5 4488 4635 374423609 374423454 3.610000e-43 187.0
55 TraesCS5D01G510200 chr7B 94.681 94 3 1 6013 6106 428965936 428965845 2.200000e-30 145.0
56 TraesCS5D01G510200 chr1A 91.632 239 18 2 3790 4027 50706003 50706240 5.670000e-86 329.0
57 TraesCS5D01G510200 chr1A 84.831 356 19 17 1153 1501 428882259 428882586 7.330000e-85 326.0
58 TraesCS5D01G510200 chr1A 91.275 149 10 3 1480 1626 444433486 444433633 4.640000e-47 200.0
59 TraesCS5D01G510200 chr1A 86.503 163 12 5 4488 4644 50706273 50706431 3.640000e-38 171.0
60 TraesCS5D01G510200 chr6B 90.795 239 19 3 3790 4027 683645838 683646074 4.410000e-82 316.0
61 TraesCS5D01G510200 chr6B 95.489 133 4 2 1495 1626 187841711 187841842 2.140000e-50 211.0
62 TraesCS5D01G510200 chr6B 93.525 139 8 1 1500 1637 159156924 159156786 9.960000e-49 206.0
63 TraesCS5D01G510200 chr6B 91.346 104 9 0 4488 4591 633847294 633847191 7.920000e-30 143.0
64 TraesCS5D01G510200 chr6B 96.491 57 1 1 4659 4715 683646310 683646365 8.090000e-15 93.5
65 TraesCS5D01G510200 chr3B 90.377 239 18 4 3790 4027 770095461 770095695 7.380000e-80 309.0
66 TraesCS5D01G510200 chr3B 84.892 278 32 5 4488 4755 545009973 545009696 9.690000e-69 272.0
67 TraesCS5D01G510200 chr3B 77.491 271 35 16 4485 4753 770095725 770095971 1.030000e-28 139.0
68 TraesCS5D01G510200 chr3B 95.455 88 0 3 6020 6106 474402086 474402002 3.690000e-28 137.0
69 TraesCS5D01G510200 chr3B 93.182 88 4 1 6020 6107 765312661 765312746 2.220000e-25 128.0
70 TraesCS5D01G510200 chr3B 87.234 94 6 3 5104 5197 545009465 545009378 1.340000e-17 102.0
71 TraesCS5D01G510200 chr2A 85.859 297 24 6 3887 4175 429139913 429140199 4.440000e-77 300.0
72 TraesCS5D01G510200 chr2A 83.427 356 24 17 1153 1501 123337195 123336868 1.600000e-76 298.0
73 TraesCS5D01G510200 chr2A 88.489 139 9 2 1366 1501 123336866 123336732 2.190000e-35 161.0
74 TraesCS5D01G510200 chr2A 84.167 120 11 5 4539 4650 734736514 734736633 8.040000e-20 110.0
75 TraesCS5D01G510200 chr7A 94.815 135 7 0 1492 1626 821491 821625 2.140000e-50 211.0
76 TraesCS5D01G510200 chr1D 94.203 138 7 1 1492 1629 368493818 368493682 7.700000e-50 209.0
77 TraesCS5D01G510200 chr1D 93.333 90 4 2 6019 6108 245893698 245893785 1.720000e-26 132.0
78 TraesCS5D01G510200 chrUn 91.275 149 10 3 1480 1626 477687430 477687577 4.640000e-47 200.0
79 TraesCS5D01G510200 chr1B 86.875 160 16 4 4485 4639 524273557 524273716 2.810000e-39 174.0
80 TraesCS5D01G510200 chr3A 95.402 87 2 1 6020 6106 507291574 507291490 3.690000e-28 137.0
81 TraesCS5D01G510200 chr6D 94.318 88 3 1 6019 6106 142148800 142148715 4.770000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G510200 chr5D 535130155 535137730 7575 False 13991.000000 13991 100.0000 1 7576 1 chr5D.!!$F1 7575
1 TraesCS5D01G510200 chr5B 675882512 675889848 7336 False 1171.455556 3729 93.7300 1 6891 9 chr5B.!!$F5 6890
2 TraesCS5D01G510200 chr5B 369600401 369601038 637 True 1051.000000 1051 96.4010 6939 7576 1 chr5B.!!$R1 637
3 TraesCS5D01G510200 chr4A 636646620 636656137 9517 True 1319.285714 2811 91.8580 1 6847 7 chr4A.!!$R3 6846
4 TraesCS5D01G510200 chr7D 588167690 588168325 635 True 1136.000000 1136 98.9010 6941 7576 1 chr7D.!!$R2 635
5 TraesCS5D01G510200 chr7D 184568891 184569528 637 False 1129.000000 1129 98.5920 6939 7576 1 chr7D.!!$F2 637
6 TraesCS5D01G510200 chr7D 32949849 32950486 637 True 1112.000000 1112 98.1220 6939 7576 1 chr7D.!!$R1 637
7 TraesCS5D01G510200 chr7D 7729942 7730614 672 False 656.000000 656 84.2620 3887 4601 1 chr7D.!!$F1 714
8 TraesCS5D01G510200 chr3D 566885683 566886320 637 False 1112.000000 1112 98.1220 6939 7576 1 chr3D.!!$F1 637
9 TraesCS5D01G510200 chr3D 101556109 101556745 636 True 1099.000000 1099 97.8060 6939 7576 1 chr3D.!!$R1 637
10 TraesCS5D01G510200 chr3D 380383469 380384009 540 True 298.000000 309 88.1285 3791 4754 2 chr3D.!!$R2 963
11 TraesCS5D01G510200 chr4B 373775055 373775692 637 True 1074.000000 1074 97.0270 6939 7576 1 chr4B.!!$R2 637
12 TraesCS5D01G510200 chr2B 250700787 250701424 637 False 1062.000000 1062 96.7140 6939 7576 1 chr2B.!!$F1 637
13 TraesCS5D01G510200 chr7B 716033335 716033972 637 True 1057.000000 1057 96.5570 6939 7576 1 chr7B.!!$R2 637
14 TraesCS5D01G510200 chr6B 683645838 683646365 527 False 204.750000 316 93.6430 3790 4715 2 chr6B.!!$F2 925
15 TraesCS5D01G510200 chr3B 770095461 770095971 510 False 224.000000 309 83.9340 3790 4753 2 chr3B.!!$F2 963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 726 0.394352 CCGGCAGAACCCAAGCTAAT 60.394 55.000 0.00 0.0 33.26 1.73 F
654 727 1.134220 CCGGCAGAACCCAAGCTAATA 60.134 52.381 0.00 0.0 33.26 0.98 F
1515 1858 0.032813 AATTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.0 42.90 5.14 F
1521 1864 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 F
2534 3082 0.326238 TCCGGGCTCCATTACCTTCT 60.326 55.000 0.00 0.0 0.00 2.85 F
4262 5277 0.818040 ACGAGGAACAGGTTGGTTGC 60.818 55.000 0.00 0.0 39.14 4.17 F
4377 5392 0.737715 GGACCTCGTCTGTCATGTGC 60.738 60.000 0.00 0.0 34.36 4.57 F
6035 9149 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1845 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
2042 2589 0.178861 TCCTGGGAAGCCTCCTTCTT 60.179 55.000 0.32 0.00 45.44 2.52 R
3185 3745 3.452264 TGGATGGTCACCTCATCAAGTAG 59.548 47.826 0.00 0.00 41.89 2.57 R
3220 3780 4.171005 TCGAACAGCACTTCCTTTATACG 58.829 43.478 0.00 0.00 0.00 3.06 R
4377 5392 4.169508 CGAAGCCATATTATCGACTGGAG 58.830 47.826 0.00 0.00 37.48 3.86 R
6085 9199 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90 R
6086 9200 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71 R
6853 10003 0.606673 GAGTGGGTGGCTCAAGGAAC 60.607 60.000 0.00 0.00 33.45 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.256461 CGCCTGCAGCAGTTTTCC 59.744 61.111 21.26 3.34 44.04 3.13
281 283 4.746535 GGAACCTCTTCTTCCTTCCTAG 57.253 50.000 0.00 0.00 35.23 3.02
342 349 3.615496 ACCGTAAATTGATTCGTTCTCGG 59.385 43.478 0.00 0.00 40.00 4.63
460 468 0.396139 TGGAGATTGGGGAGCAATGC 60.396 55.000 0.00 0.00 0.00 3.56
507 515 7.851228 TGTCTGTAACTGATATGTTCATCCTT 58.149 34.615 0.00 0.00 32.72 3.36
512 520 5.456921 ACTGATATGTTCATCCTTTGGGT 57.543 39.130 0.00 0.00 32.72 4.51
533 541 1.271656 GTGTCAGGTAACGCCACTAGT 59.728 52.381 0.00 0.00 46.39 2.57
558 566 2.567985 TGAAAAAGAGGGGAACACGAC 58.432 47.619 0.00 0.00 0.00 4.34
564 572 3.998672 GGGGAACACGACCAGCGA 61.999 66.667 0.00 0.00 44.57 4.93
577 596 2.079158 ACCAGCGAACTTGATGATGTG 58.921 47.619 0.00 0.00 0.00 3.21
620 639 6.395426 TTTGAAGTTCTGAACTACGGAGTA 57.605 37.500 22.30 3.59 45.11 2.59
648 721 1.256812 AATTTCCGGCAGAACCCAAG 58.743 50.000 0.00 0.00 32.95 3.61
649 722 1.250840 ATTTCCGGCAGAACCCAAGC 61.251 55.000 0.00 0.00 32.95 4.01
650 723 2.351924 TTTCCGGCAGAACCCAAGCT 62.352 55.000 0.00 0.00 32.95 3.74
651 724 1.485294 TTCCGGCAGAACCCAAGCTA 61.485 55.000 0.00 0.00 33.26 3.32
652 725 1.002624 CCGGCAGAACCCAAGCTAA 60.003 57.895 0.00 0.00 33.26 3.09
653 726 0.394352 CCGGCAGAACCCAAGCTAAT 60.394 55.000 0.00 0.00 33.26 1.73
654 727 1.134220 CCGGCAGAACCCAAGCTAATA 60.134 52.381 0.00 0.00 33.26 0.98
655 728 2.639065 CGGCAGAACCCAAGCTAATAA 58.361 47.619 0.00 0.00 33.26 1.40
764 1083 5.009210 GGTGTTGTCCTAGTAATGTGCAAAA 59.991 40.000 0.00 0.00 0.00 2.44
816 1135 7.778470 AGGAGAAGCTCTTAACAATTTATCG 57.222 36.000 0.00 0.00 0.00 2.92
826 1145 8.958175 TCTTAACAATTTATCGCGTCATTTTT 57.042 26.923 5.77 2.93 0.00 1.94
850 1169 5.289917 TGTTGAAACAAATATCGCGTCAT 57.710 34.783 5.77 0.00 35.67 3.06
851 1170 5.694816 TGTTGAAACAAATATCGCGTCATT 58.305 33.333 5.77 3.91 35.67 2.57
852 1171 6.146216 TGTTGAAACAAATATCGCGTCATTT 58.854 32.000 5.77 10.27 35.67 2.32
853 1172 6.638873 TGTTGAAACAAATATCGCGTCATTTT 59.361 30.769 5.77 0.00 35.67 1.82
854 1173 6.846870 TGAAACAAATATCGCGTCATTTTC 57.153 33.333 5.77 8.33 0.00 2.29
857 1176 8.231161 TGAAACAAATATCGCGTCATTTTCTTA 58.769 29.630 5.77 0.00 0.00 2.10
883 1221 9.665719 ATTACTGAAAAAGTTGTGGAAATTGTT 57.334 25.926 0.00 0.00 40.56 2.83
948 1286 2.956964 CCCGCGCTCGTCTTCATC 60.957 66.667 5.56 0.00 0.00 2.92
1282 1625 5.832539 ACTGACTCCCCATTTCTATATGG 57.167 43.478 0.00 0.00 43.90 2.74
1324 1667 3.655486 TCCGTTGAATCGCTCAGTTAAA 58.345 40.909 0.00 0.00 34.81 1.52
1332 1675 4.606457 ATCGCTCAGTTAAATTCACTGC 57.394 40.909 11.34 2.73 41.37 4.40
1361 1704 1.134670 CCAGCCTTCAGTAGCCAGTAC 60.135 57.143 0.00 0.00 0.00 2.73
1383 1726 1.442769 GCACATGGCTCTTTCTCGAA 58.557 50.000 0.00 0.00 40.25 3.71
1385 1728 3.198068 GCACATGGCTCTTTCTCGAATA 58.802 45.455 0.00 0.00 40.25 1.75
1386 1729 3.623060 GCACATGGCTCTTTCTCGAATAA 59.377 43.478 0.00 0.00 40.25 1.40
1387 1730 4.260538 GCACATGGCTCTTTCTCGAATAAG 60.261 45.833 0.00 0.00 40.25 1.73
1388 1731 3.873952 ACATGGCTCTTTCTCGAATAAGC 59.126 43.478 0.00 5.64 0.00 3.09
1391 1734 3.873361 TGGCTCTTTCTCGAATAAGCATG 59.127 43.478 12.73 0.00 32.87 4.06
1406 1749 7.112565 CGAATAAGCATGATCTATGTTTTGTGC 59.887 37.037 0.00 0.00 40.22 4.57
1407 1750 5.648178 AAGCATGATCTATGTTTTGTGCA 57.352 34.783 0.00 0.00 36.94 4.57
1408 1751 5.847111 AGCATGATCTATGTTTTGTGCAT 57.153 34.783 0.00 0.00 39.08 3.96
1416 1759 5.221880 TCTATGTTTTGTGCATGCTGTTTC 58.778 37.500 20.33 5.89 0.00 2.78
1425 1768 3.445096 GTGCATGCTGTTTCCTAGGATTT 59.555 43.478 20.33 0.00 0.00 2.17
1427 1770 4.527816 TGCATGCTGTTTCCTAGGATTTTT 59.472 37.500 20.33 0.00 0.00 1.94
1501 1844 8.921670 GGATTTGAACAATGTGTTGGTAATTAC 58.078 33.333 7.09 7.09 41.28 1.89
1502 1845 9.691362 GATTTGAACAATGTGTTGGTAATTACT 57.309 29.630 15.05 0.00 41.28 2.24
1503 1846 9.691362 ATTTGAACAATGTGTTGGTAATTACTC 57.309 29.630 15.05 6.39 41.28 2.59
1504 1847 7.209471 TGAACAATGTGTTGGTAATTACTCC 57.791 36.000 15.05 0.45 41.28 3.85
1505 1848 6.207810 TGAACAATGTGTTGGTAATTACTCCC 59.792 38.462 15.05 0.00 41.28 4.30
1506 1849 5.887754 ACAATGTGTTGGTAATTACTCCCT 58.112 37.500 15.05 0.00 39.70 4.20
1507 1850 5.944007 ACAATGTGTTGGTAATTACTCCCTC 59.056 40.000 15.05 5.03 39.70 4.30
1508 1851 4.563140 TGTGTTGGTAATTACTCCCTCC 57.437 45.455 15.05 0.00 0.00 4.30
1509 1852 3.055675 TGTGTTGGTAATTACTCCCTCCG 60.056 47.826 15.05 0.00 0.00 4.63
1510 1853 3.055602 GTGTTGGTAATTACTCCCTCCGT 60.056 47.826 15.05 0.00 0.00 4.69
1511 1854 3.196254 TGTTGGTAATTACTCCCTCCGTC 59.804 47.826 15.05 0.00 0.00 4.79
1512 1855 2.391678 TGGTAATTACTCCCTCCGTCC 58.608 52.381 15.05 0.00 0.00 4.79
1513 1856 1.339291 GGTAATTACTCCCTCCGTCCG 59.661 57.143 15.05 0.00 0.00 4.79
1514 1857 1.339291 GTAATTACTCCCTCCGTCCGG 59.661 57.143 8.41 0.00 0.00 5.14
1515 1858 0.032813 AATTACTCCCTCCGTCCGGA 60.033 55.000 0.00 0.00 42.90 5.14
1516 1859 0.032813 ATTACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
1517 1860 0.251742 TTACTCCCTCCGTCCGGAAA 60.252 55.000 5.23 0.00 44.66 3.13
1518 1861 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1519 1862 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1520 1863 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1521 1864 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1522 1865 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1523 1866 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1524 1867 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1525 1868 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1526 1869 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1527 1870 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1528 1871 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1529 1872 3.430374 CCGTCCGGAAATACTTGTCATCT 60.430 47.826 5.23 0.00 37.50 2.90
1530 1873 4.202080 CCGTCCGGAAATACTTGTCATCTA 60.202 45.833 5.23 0.00 37.50 1.98
1531 1874 5.345702 CGTCCGGAAATACTTGTCATCTAA 58.654 41.667 5.23 0.00 0.00 2.10
1532 1875 5.808540 CGTCCGGAAATACTTGTCATCTAAA 59.191 40.000 5.23 0.00 0.00 1.85
1533 1876 6.479001 CGTCCGGAAATACTTGTCATCTAAAT 59.521 38.462 5.23 0.00 0.00 1.40
1534 1877 7.516785 CGTCCGGAAATACTTGTCATCTAAATG 60.517 40.741 5.23 0.00 0.00 2.32
1535 1878 7.280205 GTCCGGAAATACTTGTCATCTAAATGT 59.720 37.037 5.23 0.00 34.32 2.71
1536 1879 8.479689 TCCGGAAATACTTGTCATCTAAATGTA 58.520 33.333 0.00 0.00 34.32 2.29
1537 1880 9.273016 CCGGAAATACTTGTCATCTAAATGTAT 57.727 33.333 0.00 0.00 34.32 2.29
1605 1948 8.868522 TCTTTCTATCCATTTTGATGACAAGT 57.131 30.769 0.00 0.00 37.32 3.16
1606 1949 9.958180 TCTTTCTATCCATTTTGATGACAAGTA 57.042 29.630 0.00 0.00 37.32 2.24
1612 1955 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
1613 1956 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
1614 1957 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
1615 1958 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
1616 1959 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1617 1960 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1618 1961 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1619 1962 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1620 1963 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1621 1964 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1622 1965 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1623 1966 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1624 1967 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1636 1979 3.700038 ACGGAGGGAGTAATACTCAACTG 59.300 47.826 20.57 16.47 46.79 3.16
1647 1990 1.888215 ACTCAACTGCACAGGACATG 58.112 50.000 2.21 0.00 0.00 3.21
1761 2111 8.506168 AATTACCAGTTTGGATGTACTGTATG 57.494 34.615 1.40 0.00 40.96 2.39
1789 2236 7.816031 TGGTTACTTAGTTACTTGATGTACTGC 59.184 37.037 1.56 0.00 0.00 4.40
1805 2352 2.716217 ACTGCATAAGTCCTGCCTTTC 58.284 47.619 0.00 0.00 38.89 2.62
1858 2405 7.009540 GCAAATCTTGGTGCTTACATTGTATTC 59.990 37.037 0.00 0.00 37.78 1.75
1892 2439 4.697352 CACCACTTCTTCTACCAATTGGAG 59.303 45.833 31.22 21.42 38.94 3.86
1960 2507 2.471370 GGCTAAACGTTTGCTGCTTTTC 59.529 45.455 23.46 8.29 0.00 2.29
2042 2589 5.763204 CAGCCTTCTAAACACAAGGAGTAAA 59.237 40.000 1.75 0.00 34.39 2.01
2361 2908 2.044252 CCTTCAGGCTGCTGGCAT 60.044 61.111 19.23 1.60 44.01 4.40
2534 3082 0.326238 TCCGGGCTCCATTACCTTCT 60.326 55.000 0.00 0.00 0.00 2.85
2720 3280 8.617809 ACATTATCCGTGATTAAACACCATAAC 58.382 33.333 9.96 0.00 37.48 1.89
2913 3473 7.038231 AGGTAGGTCTGACTAATTGCTTAGTTT 60.038 37.037 7.85 0.00 45.97 2.66
3185 3745 4.881273 TGCCAACAGAATACATGGTGATAC 59.119 41.667 0.00 0.00 37.57 2.24
3220 3780 4.079253 TGACCATCCAAAGCTTTTAGGTC 58.921 43.478 26.60 26.60 43.41 3.85
3230 3790 6.596497 CCAAAGCTTTTAGGTCGTATAAAGGA 59.404 38.462 9.53 0.00 0.00 3.36
3231 3791 7.120138 CCAAAGCTTTTAGGTCGTATAAAGGAA 59.880 37.037 9.53 0.00 0.00 3.36
3232 3792 7.845066 AAGCTTTTAGGTCGTATAAAGGAAG 57.155 36.000 0.00 0.00 0.00 3.46
3233 3793 6.944096 AGCTTTTAGGTCGTATAAAGGAAGT 58.056 36.000 0.00 0.00 0.00 3.01
3234 3794 6.817140 AGCTTTTAGGTCGTATAAAGGAAGTG 59.183 38.462 0.00 0.00 0.00 3.16
3235 3795 6.456584 GCTTTTAGGTCGTATAAAGGAAGTGC 60.457 42.308 0.00 0.00 0.00 4.40
3236 3796 5.927281 TTAGGTCGTATAAAGGAAGTGCT 57.073 39.130 0.00 0.00 0.00 4.40
3237 3797 4.124851 AGGTCGTATAAAGGAAGTGCTG 57.875 45.455 0.00 0.00 0.00 4.41
3238 3798 3.514309 AGGTCGTATAAAGGAAGTGCTGT 59.486 43.478 0.00 0.00 0.00 4.40
3239 3799 4.020485 AGGTCGTATAAAGGAAGTGCTGTT 60.020 41.667 0.00 0.00 0.00 3.16
3240 3800 4.329256 GGTCGTATAAAGGAAGTGCTGTTC 59.671 45.833 0.00 0.00 0.00 3.18
3241 3801 4.031426 GTCGTATAAAGGAAGTGCTGTTCG 59.969 45.833 0.00 0.00 0.00 3.95
3242 3802 4.082625 TCGTATAAAGGAAGTGCTGTTCGA 60.083 41.667 0.00 0.00 0.00 3.71
3243 3803 4.624024 CGTATAAAGGAAGTGCTGTTCGAA 59.376 41.667 0.00 0.00 0.00 3.71
3244 3804 5.220228 CGTATAAAGGAAGTGCTGTTCGAAG 60.220 44.000 0.00 0.00 0.00 3.79
3245 3805 2.910688 AAGGAAGTGCTGTTCGAAGA 57.089 45.000 0.00 0.00 0.00 2.87
3246 3806 3.409026 AAGGAAGTGCTGTTCGAAGAT 57.591 42.857 0.00 0.00 35.04 2.40
3247 3807 4.537135 AAGGAAGTGCTGTTCGAAGATA 57.463 40.909 0.00 0.00 35.04 1.98
3248 3808 3.851098 AGGAAGTGCTGTTCGAAGATAC 58.149 45.455 0.00 0.00 35.04 2.24
3249 3809 3.258372 AGGAAGTGCTGTTCGAAGATACA 59.742 43.478 0.00 0.00 35.04 2.29
3250 3810 3.994392 GGAAGTGCTGTTCGAAGATACAA 59.006 43.478 0.00 0.00 35.04 2.41
3251 3811 4.631813 GGAAGTGCTGTTCGAAGATACAAT 59.368 41.667 0.00 0.00 35.04 2.71
3252 3812 5.122396 GGAAGTGCTGTTCGAAGATACAATT 59.878 40.000 9.77 9.77 35.04 2.32
3253 3813 6.348540 GGAAGTGCTGTTCGAAGATACAATTT 60.349 38.462 0.00 0.00 35.04 1.82
3254 3814 6.560253 AGTGCTGTTCGAAGATACAATTTT 57.440 33.333 0.00 0.00 35.04 1.82
3255 3815 7.667043 AGTGCTGTTCGAAGATACAATTTTA 57.333 32.000 0.00 0.00 35.04 1.52
3256 3816 8.268850 AGTGCTGTTCGAAGATACAATTTTAT 57.731 30.769 0.00 0.00 35.04 1.40
3257 3817 8.177663 AGTGCTGTTCGAAGATACAATTTTATG 58.822 33.333 0.00 0.00 35.04 1.90
3258 3818 6.966632 TGCTGTTCGAAGATACAATTTTATGC 59.033 34.615 0.00 0.00 35.04 3.14
3511 4108 5.604758 TCTCCACTTATGAGATCAACTGG 57.395 43.478 0.00 0.00 34.03 4.00
4262 5277 0.818040 ACGAGGAACAGGTTGGTTGC 60.818 55.000 0.00 0.00 39.14 4.17
4377 5392 0.737715 GGACCTCGTCTGTCATGTGC 60.738 60.000 0.00 0.00 34.36 4.57
4453 5468 4.156556 GCAGTTGACTTCAGCAAATATCCA 59.843 41.667 0.00 0.00 0.00 3.41
4475 5490 8.014070 TCCATTTCGAGTATGTAACCTAATCA 57.986 34.615 8.29 0.00 0.00 2.57
4490 5505 6.910536 ACCTAATCATCATTCGTTTCTGTC 57.089 37.500 0.00 0.00 0.00 3.51
4661 5687 7.416154 TGTTGAGTCTACCGTAATGAAAAAG 57.584 36.000 2.18 0.00 0.00 2.27
4739 5796 8.078596 GTGAGTTCTGTTTATTTGCATCTTCTT 58.921 33.333 0.00 0.00 0.00 2.52
4834 7936 4.069304 TGGTGTAAGTTCCTGCAATGTAC 58.931 43.478 0.00 0.00 0.00 2.90
4961 8065 2.415090 GCAAAGTAAGCACATCTGGCAG 60.415 50.000 8.58 8.58 0.00 4.85
4977 8081 6.061022 TCTGGCAGTACATTCTATTTGGAA 57.939 37.500 15.27 0.00 0.00 3.53
5016 8120 4.691216 GGAGTTGTTCTGACGAAGCTTATT 59.309 41.667 0.00 0.00 0.00 1.40
5246 8350 7.179160 TGCTCTTGTATACCACATCTATATGCT 59.821 37.037 0.00 0.00 36.90 3.79
5249 8353 8.531982 TCTTGTATACCACATCTATATGCTTCC 58.468 37.037 0.00 0.00 36.90 3.46
5256 8360 6.070538 ACCACATCTATATGCTTCCCTATGTC 60.071 42.308 0.00 0.00 36.50 3.06
5257 8361 6.344500 CACATCTATATGCTTCCCTATGTCC 58.656 44.000 0.00 0.00 36.50 4.02
5259 8363 6.155910 ACATCTATATGCTTCCCTATGTCCTG 59.844 42.308 0.00 0.00 36.50 3.86
5466 8575 7.275560 GCAAACAGAACACATGTAACTCTTTTT 59.724 33.333 0.00 3.97 0.00 1.94
5576 8685 9.838339 CCATCAGGTTAAAATCTGTAGAAGTAT 57.162 33.333 3.04 0.00 38.31 2.12
5665 8779 3.908382 GCAGTCAATTCTTTGTGCTAACG 59.092 43.478 0.00 0.00 33.99 3.18
5670 8784 1.975660 TTCTTTGTGCTAACGGCCTT 58.024 45.000 0.00 0.00 40.92 4.35
5765 8879 3.932710 TGTCGTTATTCCACAATCTCTGC 59.067 43.478 0.00 0.00 0.00 4.26
5974 9088 4.715297 GGAACTCCCTGAGGTATTAACTCA 59.285 45.833 10.90 10.90 42.31 3.41
5999 9113 3.634397 ACTTGTCCCACCACTCATATG 57.366 47.619 0.00 0.00 0.00 1.78
6007 9121 5.483937 GTCCCACCACTCATATGATATACCA 59.516 44.000 5.72 0.00 0.00 3.25
6035 9149 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
6047 9161 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
6054 9168 7.466185 CGTCCCATAATATAAGACGTTTTTGCA 60.466 37.037 13.04 0.00 43.89 4.08
6061 9175 8.841444 AATATAAGACGTTTTTGCAAGCTATG 57.159 30.769 0.00 0.00 0.00 2.23
6062 9176 4.568152 AAGACGTTTTTGCAAGCTATGT 57.432 36.364 0.00 0.68 0.00 2.29
6063 9177 4.568152 AGACGTTTTTGCAAGCTATGTT 57.432 36.364 0.00 0.00 0.00 2.71
6064 9178 4.932146 AGACGTTTTTGCAAGCTATGTTT 58.068 34.783 0.00 0.00 0.00 2.83
6065 9179 5.348164 AGACGTTTTTGCAAGCTATGTTTT 58.652 33.333 0.00 0.00 0.00 2.43
6066 9180 6.500041 AGACGTTTTTGCAAGCTATGTTTTA 58.500 32.000 0.00 0.00 0.00 1.52
6067 9181 6.636850 AGACGTTTTTGCAAGCTATGTTTTAG 59.363 34.615 0.00 0.00 0.00 1.85
6068 9182 5.174943 ACGTTTTTGCAAGCTATGTTTTAGC 59.825 36.000 0.00 0.00 40.67 3.09
6079 9193 5.598783 GCTATGTTTTAGCTTGCAAAAACG 58.401 37.500 15.90 6.69 44.67 3.60
6080 9194 5.174943 GCTATGTTTTAGCTTGCAAAAACGT 59.825 36.000 18.32 18.32 44.67 3.99
6081 9195 5.635549 ATGTTTTAGCTTGCAAAAACGTC 57.364 34.783 15.90 3.49 44.67 4.34
6082 9196 4.739195 TGTTTTAGCTTGCAAAAACGTCT 58.261 34.783 15.90 3.84 44.67 4.18
6083 9197 5.164954 TGTTTTAGCTTGCAAAAACGTCTT 58.835 33.333 15.90 0.00 44.67 3.01
6084 9198 6.323266 TGTTTTAGCTTGCAAAAACGTCTTA 58.677 32.000 15.90 0.62 44.67 2.10
6085 9199 6.975772 TGTTTTAGCTTGCAAAAACGTCTTAT 59.024 30.769 15.90 0.00 44.67 1.73
6086 9200 8.129840 TGTTTTAGCTTGCAAAAACGTCTTATA 58.870 29.630 15.90 0.00 44.67 0.98
6087 9201 9.124807 GTTTTAGCTTGCAAAAACGTCTTATAT 57.875 29.630 0.00 0.00 36.27 0.86
6088 9202 9.685828 TTTTAGCTTGCAAAAACGTCTTATATT 57.314 25.926 0.00 0.00 0.00 1.28
6089 9203 8.667987 TTAGCTTGCAAAAACGTCTTATATTG 57.332 30.769 0.00 0.00 0.00 1.90
6090 9204 6.677913 AGCTTGCAAAAACGTCTTATATTGT 58.322 32.000 0.00 0.00 0.00 2.71
6091 9205 6.582295 AGCTTGCAAAAACGTCTTATATTGTG 59.418 34.615 0.00 0.00 0.00 3.33
6092 9206 6.183359 GCTTGCAAAAACGTCTTATATTGTGG 60.183 38.462 0.00 0.00 0.00 4.17
6093 9207 5.704888 TGCAAAAACGTCTTATATTGTGGG 58.295 37.500 0.00 0.00 0.00 4.61
6094 9208 5.473846 TGCAAAAACGTCTTATATTGTGGGA 59.526 36.000 0.00 0.00 0.00 4.37
6095 9209 5.798434 GCAAAAACGTCTTATATTGTGGGAC 59.202 40.000 0.00 0.00 0.00 4.46
6098 9212 3.720949 CGTCTTATATTGTGGGACGGA 57.279 47.619 0.00 0.00 43.69 4.69
6099 9213 3.639538 CGTCTTATATTGTGGGACGGAG 58.360 50.000 0.00 0.00 43.69 4.63
6100 9214 3.552273 CGTCTTATATTGTGGGACGGAGG 60.552 52.174 0.00 0.00 43.69 4.30
6101 9215 2.969950 TCTTATATTGTGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
6102 9216 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
6119 9233 3.477530 AGGGAGTAGTGCTTTTCAACAC 58.522 45.455 0.00 0.00 37.05 3.32
6144 9258 7.840210 ACCCCCTTCGAATATTTTACCAATAAA 59.160 33.333 0.00 0.00 0.00 1.40
6167 9284 4.041321 ACTTCTAAGGTGGAAAGGTGGTAC 59.959 45.833 0.00 0.00 0.00 3.34
6168 9285 3.865571 TCTAAGGTGGAAAGGTGGTACT 58.134 45.455 0.00 0.00 0.00 2.73
6204 9325 5.467735 AGTTACTTTACTTAAGGTTGCACGG 59.532 40.000 7.53 0.00 38.23 4.94
6269 9390 7.710044 TCATTTCTTGAGCAAAAGCATGTTTTA 59.290 29.630 8.03 0.00 0.00 1.52
6310 9431 5.580661 TGAAATCATGTGCATAAACCATCG 58.419 37.500 0.00 0.00 0.00 3.84
6359 9480 0.533491 GCCTCATTTGCCATCTTGCA 59.467 50.000 0.00 0.00 40.07 4.08
6362 9483 2.494471 CCTCATTTGCCATCTTGCAGAA 59.506 45.455 0.00 0.00 43.21 3.02
6374 9495 0.597072 TTGCAGAAACGCATGATGCA 59.403 45.000 18.47 0.00 45.36 3.96
6385 9506 4.603985 ACGCATGATGCAAATATTCAGTG 58.396 39.130 18.47 0.00 45.36 3.66
6562 9699 1.456705 GGGAGATCACGAGAGCCCT 60.457 63.158 9.83 0.00 33.26 5.19
6614 9751 2.861462 TGTGTTGCAAAGTTAGCCAC 57.139 45.000 0.00 3.77 0.00 5.01
6664 9814 1.855213 CTTGCCCGTGTGTGGTCATG 61.855 60.000 0.00 0.00 0.00 3.07
6669 9819 1.953642 CGTGTGTGGTCATGCGTCA 60.954 57.895 0.00 0.00 0.00 4.35
6797 9947 3.319122 GTGGTTCAGTCTGGCAAAAGATT 59.681 43.478 0.00 0.00 0.00 2.40
6822 9972 0.238289 AGCCTTTTCGTGACATTGCG 59.762 50.000 0.00 0.00 0.00 4.85
6847 9997 1.831736 GGCTGTGGCTTCTACTTCCTA 59.168 52.381 0.00 0.00 38.73 2.94
6850 10000 3.386402 GCTGTGGCTTCTACTTCCTATCT 59.614 47.826 0.00 0.00 35.22 1.98
6852 10002 5.344743 TGTGGCTTCTACTTCCTATCTTG 57.655 43.478 0.00 0.00 0.00 3.02
6853 10003 4.162320 TGTGGCTTCTACTTCCTATCTTGG 59.838 45.833 0.00 0.00 0.00 3.61
6859 10009 6.352308 GCTTCTACTTCCTATCTTGGTTCCTT 60.352 42.308 0.00 0.00 0.00 3.36
6863 10013 3.914426 TCCTATCTTGGTTCCTTGAGC 57.086 47.619 0.00 0.00 0.00 4.26
6877 10027 2.357517 GAGCCACCCACTCGTGTG 60.358 66.667 10.61 10.61 43.45 3.82
6895 10045 4.561731 GTCGAGTGACCAGAGCAC 57.438 61.111 0.00 0.00 39.30 4.40
6896 10046 1.080434 GTCGAGTGACCAGAGCACC 60.080 63.158 0.00 0.00 39.30 5.01
6897 10047 2.262915 CGAGTGACCAGAGCACCC 59.737 66.667 0.00 0.00 36.95 4.61
6898 10048 2.574018 CGAGTGACCAGAGCACCCA 61.574 63.158 0.00 0.00 36.95 4.51
6899 10049 1.892819 CGAGTGACCAGAGCACCCAT 61.893 60.000 0.00 0.00 36.95 4.00
6900 10050 1.195115 GAGTGACCAGAGCACCCATA 58.805 55.000 0.00 0.00 36.95 2.74
6901 10051 1.765314 GAGTGACCAGAGCACCCATAT 59.235 52.381 0.00 0.00 36.95 1.78
6902 10052 1.487976 AGTGACCAGAGCACCCATATG 59.512 52.381 0.00 0.00 36.95 1.78
6903 10053 0.839277 TGACCAGAGCACCCATATGG 59.161 55.000 15.41 15.41 41.37 2.74
7080 10230 4.273480 CGAATGGCGAGGTTATCAAATTCT 59.727 41.667 0.00 0.00 44.57 2.40
7353 10504 6.585389 GGTAGACGAACATGTTTTCCTATC 57.415 41.667 13.36 10.29 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 6.146347 CCAAGAGAAAAGTAAGACGAGGAAAG 59.854 42.308 0.00 0.00 0.00 2.62
280 282 3.371380 GGCTCCCTCATCAACATCTTTCT 60.371 47.826 0.00 0.00 0.00 2.52
281 283 2.948315 GGCTCCCTCATCAACATCTTTC 59.052 50.000 0.00 0.00 0.00 2.62
410 417 8.575589 ACTGCAACAAACATATGAGATAACAAA 58.424 29.630 10.38 0.00 0.00 2.83
423 430 4.887071 TCTCCAGTTAACTGCAACAAACAT 59.113 37.500 27.05 0.00 42.47 2.71
426 433 5.221224 CCAATCTCCAGTTAACTGCAACAAA 60.221 40.000 27.05 10.87 42.47 2.83
489 497 5.653769 CACCCAAAGGATGAACATATCAGTT 59.346 40.000 0.00 0.00 37.88 3.16
507 515 0.533308 GCGTTACCTGACACACCCAA 60.533 55.000 0.00 0.00 0.00 4.12
512 520 1.271379 CTAGTGGCGTTACCTGACACA 59.729 52.381 1.39 0.00 40.22 3.72
533 541 2.227194 GTTCCCCTCTTTTTCAAGCGA 58.773 47.619 0.00 0.00 0.00 4.93
558 566 1.202110 GCACATCATCAAGTTCGCTGG 60.202 52.381 0.00 0.00 0.00 4.85
564 572 1.180029 GGCAGGCACATCATCAAGTT 58.820 50.000 0.00 0.00 0.00 2.66
577 596 0.321298 TTCTAACTGGTTCGGCAGGC 60.321 55.000 0.00 0.00 0.00 4.85
620 639 2.305927 TCTGCCGGAAATTTTCTCTCCT 59.694 45.455 5.05 0.00 0.00 3.69
719 1038 2.809696 CGACCCAACATACTCCGTTTTT 59.190 45.455 0.00 0.00 0.00 1.94
720 1039 2.419667 CGACCCAACATACTCCGTTTT 58.580 47.619 0.00 0.00 0.00 2.43
721 1040 1.338389 CCGACCCAACATACTCCGTTT 60.338 52.381 0.00 0.00 0.00 3.60
739 1058 2.671396 GCACATTACTAGGACAACACCG 59.329 50.000 0.00 0.00 34.73 4.94
829 1148 6.611380 AAATGACGCGATATTTGTTTCAAC 57.389 33.333 15.93 0.00 0.00 3.18
830 1149 7.081349 AGAAAATGACGCGATATTTGTTTCAA 58.919 30.769 15.93 0.00 0.00 2.69
836 1155 9.864034 AGTAATAAGAAAATGACGCGATATTTG 57.136 29.630 15.93 0.00 0.00 2.32
837 1156 9.864034 CAGTAATAAGAAAATGACGCGATATTT 57.136 29.630 15.93 15.81 0.00 1.40
838 1157 9.256477 TCAGTAATAAGAAAATGACGCGATATT 57.744 29.630 15.93 10.09 0.00 1.28
839 1158 8.812147 TCAGTAATAAGAAAATGACGCGATAT 57.188 30.769 15.93 3.08 0.00 1.63
841 1160 7.534085 TTCAGTAATAAGAAAATGACGCGAT 57.466 32.000 15.93 0.00 0.00 4.58
843 1162 8.429739 TTTTTCAGTAATAAGAAAATGACGCG 57.570 30.769 3.53 3.53 41.67 6.01
844 1163 9.394477 ACTTTTTCAGTAATAAGAAAATGACGC 57.606 29.630 15.70 0.00 41.67 5.19
857 1176 9.665719 AACAATTTCCACAACTTTTTCAGTAAT 57.334 25.926 0.00 0.00 32.94 1.89
915 1253 2.570284 GGGGTTTTCCGCCTTGTGG 61.570 63.158 0.00 0.00 45.68 4.17
1282 1625 4.098196 GGAGACACCACCTAATCAGTAGAC 59.902 50.000 0.00 0.00 38.79 2.59
1296 1639 0.669318 GCGATTCAACGGAGACACCA 60.669 55.000 0.00 0.00 38.90 4.17
1324 1667 2.493278 GCTGGGTAAATGTGCAGTGAAT 59.507 45.455 0.00 0.00 0.00 2.57
1332 1675 2.795329 ACTGAAGGCTGGGTAAATGTG 58.205 47.619 0.00 0.00 0.00 3.21
1381 1724 7.916977 TGCACAAAACATAGATCATGCTTATTC 59.083 33.333 0.00 0.00 38.29 1.75
1383 1726 7.337480 TGCACAAAACATAGATCATGCTTAT 57.663 32.000 0.00 0.00 38.29 1.73
1385 1728 5.648178 TGCACAAAACATAGATCATGCTT 57.352 34.783 0.00 0.00 38.29 3.91
1386 1729 5.588240 CATGCACAAAACATAGATCATGCT 58.412 37.500 0.00 0.00 38.29 3.79
1387 1730 4.208460 GCATGCACAAAACATAGATCATGC 59.792 41.667 14.21 7.89 45.34 4.06
1388 1731 5.458779 CAGCATGCACAAAACATAGATCATG 59.541 40.000 21.98 0.00 40.78 3.07
1391 1734 4.990257 ACAGCATGCACAAAACATAGATC 58.010 39.130 21.98 0.00 42.53 2.75
1425 1768 8.864069 TCAAATTCGAGCTAATTGAACAAAAA 57.136 26.923 0.00 0.00 33.99 1.94
1427 1770 8.864069 TTTCAAATTCGAGCTAATTGAACAAA 57.136 26.923 9.85 0.57 33.99 2.83
1501 1844 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1502 1845 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1503 1846 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1504 1847 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1505 1848 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1506 1849 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1507 1850 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1508 1851 3.782046 AGATGACAAGTATTTCCGGACG 58.218 45.455 1.83 0.00 0.00 4.79
1509 1852 7.280205 ACATTTAGATGACAAGTATTTCCGGAC 59.720 37.037 1.83 0.00 36.73 4.79
1510 1853 7.335627 ACATTTAGATGACAAGTATTTCCGGA 58.664 34.615 0.00 0.00 36.73 5.14
1511 1854 7.553881 ACATTTAGATGACAAGTATTTCCGG 57.446 36.000 0.00 0.00 36.73 5.14
1579 1922 9.471702 ACTTGTCATCAAAATGGATAGAAAGAT 57.528 29.630 0.00 0.00 33.42 2.40
1580 1923 8.868522 ACTTGTCATCAAAATGGATAGAAAGA 57.131 30.769 0.00 0.00 33.42 2.52
1587 1930 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
1588 1931 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
1589 1932 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
1590 1933 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1591 1934 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1592 1935 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1593 1936 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1594 1937 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1595 1938 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1596 1939 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1597 1940 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1598 1941 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1599 1942 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1600 1943 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1601 1944 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1602 1945 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1603 1946 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1604 1947 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1605 1948 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1606 1949 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1607 1950 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
1608 1951 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
1609 1952 2.092212 AGTATTACTCCCTCCGTCCGAA 60.092 50.000 0.00 0.00 0.00 4.30
1610 1953 1.492176 AGTATTACTCCCTCCGTCCGA 59.508 52.381 0.00 0.00 0.00 4.55
1611 1954 1.878734 GAGTATTACTCCCTCCGTCCG 59.121 57.143 12.06 0.00 39.28 4.79
1612 1955 2.941480 TGAGTATTACTCCCTCCGTCC 58.059 52.381 18.81 0.00 44.44 4.79
1613 1956 3.952967 AGTTGAGTATTACTCCCTCCGTC 59.047 47.826 18.81 4.44 44.44 4.79
1614 1957 3.700038 CAGTTGAGTATTACTCCCTCCGT 59.300 47.826 18.81 0.00 44.44 4.69
1615 1958 3.491104 GCAGTTGAGTATTACTCCCTCCG 60.491 52.174 18.81 7.05 44.44 4.63
1616 1959 3.451178 TGCAGTTGAGTATTACTCCCTCC 59.549 47.826 18.81 7.68 44.44 4.30
1617 1960 4.081642 TGTGCAGTTGAGTATTACTCCCTC 60.082 45.833 18.81 10.34 44.44 4.30
1618 1961 3.838317 TGTGCAGTTGAGTATTACTCCCT 59.162 43.478 18.81 12.55 44.44 4.20
1619 1962 4.184629 CTGTGCAGTTGAGTATTACTCCC 58.815 47.826 18.81 10.77 44.44 4.30
1620 1963 4.081642 TCCTGTGCAGTTGAGTATTACTCC 60.082 45.833 18.81 6.67 44.44 3.85
1621 1964 4.865365 GTCCTGTGCAGTTGAGTATTACTC 59.135 45.833 15.57 15.57 45.26 2.59
1622 1965 4.283467 TGTCCTGTGCAGTTGAGTATTACT 59.717 41.667 0.00 0.00 0.00 2.24
1623 1966 4.566004 TGTCCTGTGCAGTTGAGTATTAC 58.434 43.478 0.00 0.00 0.00 1.89
1624 1967 4.882842 TGTCCTGTGCAGTTGAGTATTA 57.117 40.909 0.00 0.00 0.00 0.98
1636 1979 2.443887 ATTTTGTGCATGTCCTGTGC 57.556 45.000 0.00 0.00 42.81 4.57
1761 2111 8.309656 AGTACATCAAGTAACTAAGTAACCACC 58.690 37.037 0.00 0.00 33.72 4.61
1840 2387 8.574251 AAATAGTGAATACAATGTAAGCACCA 57.426 30.769 18.72 10.66 0.00 4.17
1858 2405 9.099454 GGTAGAAGAAGTGGTGATAAAATAGTG 57.901 37.037 0.00 0.00 0.00 2.74
1892 2439 4.082463 TGAAAACACACAAGAAACCTCCAC 60.082 41.667 0.00 0.00 0.00 4.02
1960 2507 1.202510 GCTGCTCTGTCCAGGACTATG 60.203 57.143 20.82 10.70 33.15 2.23
2042 2589 0.178861 TCCTGGGAAGCCTCCTTCTT 60.179 55.000 0.32 0.00 45.44 2.52
2361 2908 4.828939 ACTCATTTCATGTGCTTCCAGAAA 59.171 37.500 0.00 0.00 33.33 2.52
2534 3082 7.865530 TTAAGCTTATAGACCATGGGTGATA 57.134 36.000 18.09 7.15 35.25 2.15
2655 3215 8.821686 ATCACCAATTAATCATGGAAGTTGTA 57.178 30.769 12.27 0.00 39.12 2.41
3185 3745 3.452264 TGGATGGTCACCTCATCAAGTAG 59.548 47.826 0.00 0.00 41.89 2.57
3220 3780 4.171005 TCGAACAGCACTTCCTTTATACG 58.829 43.478 0.00 0.00 0.00 3.06
3230 3790 6.560253 AAATTGTATCTTCGAACAGCACTT 57.440 33.333 0.00 0.00 0.00 3.16
3231 3791 6.560253 AAAATTGTATCTTCGAACAGCACT 57.440 33.333 0.00 0.00 0.00 4.40
3232 3792 7.044706 GCATAAAATTGTATCTTCGAACAGCAC 60.045 37.037 0.00 0.00 0.00 4.40
3233 3793 6.966632 GCATAAAATTGTATCTTCGAACAGCA 59.033 34.615 0.00 0.00 0.00 4.41
3234 3794 6.966632 TGCATAAAATTGTATCTTCGAACAGC 59.033 34.615 0.00 0.00 0.00 4.40
3235 3795 8.788813 GTTGCATAAAATTGTATCTTCGAACAG 58.211 33.333 0.00 0.00 0.00 3.16
3236 3796 8.511321 AGTTGCATAAAATTGTATCTTCGAACA 58.489 29.630 0.00 0.00 0.00 3.18
3237 3797 8.895932 AGTTGCATAAAATTGTATCTTCGAAC 57.104 30.769 0.00 0.00 0.00 3.95
3238 3798 9.340695 CAAGTTGCATAAAATTGTATCTTCGAA 57.659 29.630 0.00 0.00 38.68 3.71
3239 3799 8.894409 CAAGTTGCATAAAATTGTATCTTCGA 57.106 30.769 0.00 0.00 38.68 3.71
3251 3811 9.734620 GCATATAATCTGACAAGTTGCATAAAA 57.265 29.630 1.81 0.00 0.00 1.52
3252 3812 9.123902 AGCATATAATCTGACAAGTTGCATAAA 57.876 29.630 1.81 0.00 0.00 1.40
3253 3813 8.562052 CAGCATATAATCTGACAAGTTGCATAA 58.438 33.333 1.81 0.00 32.26 1.90
3254 3814 7.308169 GCAGCATATAATCTGACAAGTTGCATA 60.308 37.037 1.81 0.00 32.26 3.14
3255 3815 6.514541 GCAGCATATAATCTGACAAGTTGCAT 60.515 38.462 1.81 0.00 32.26 3.96
3256 3816 5.220912 GCAGCATATAATCTGACAAGTTGCA 60.221 40.000 1.81 1.35 32.26 4.08
3257 3817 5.008415 AGCAGCATATAATCTGACAAGTTGC 59.992 40.000 1.81 0.00 32.26 4.17
3258 3818 6.037940 ACAGCAGCATATAATCTGACAAGTTG 59.962 38.462 0.00 0.00 32.26 3.16
3348 3937 8.316946 TGGCATGGTTTCACATTATGATAAAAA 58.683 29.630 0.00 0.00 37.11 1.94
3349 3938 7.845037 TGGCATGGTTTCACATTATGATAAAA 58.155 30.769 0.00 0.00 37.11 1.52
3766 4363 7.648142 AGAAGAGATCGCTAATGAGAAGTAAG 58.352 38.462 0.00 0.00 0.00 2.34
4377 5392 4.169508 CGAAGCCATATTATCGACTGGAG 58.830 47.826 0.00 0.00 37.48 3.86
4475 5490 6.931281 TCTGAAAAGAGACAGAAACGAATGAT 59.069 34.615 0.00 0.00 39.68 2.45
4490 5505 7.651808 TGGCAAAAGTTATCTTCTGAAAAGAG 58.348 34.615 0.00 0.00 32.90 2.85
4739 5796 3.192944 AGGGAGTCCATGGATTGAAAGA 58.807 45.455 19.62 0.00 34.83 2.52
5016 8120 3.712733 AGTGGTACCAGTGTCCAGTAAAA 59.287 43.478 21.79 0.00 33.73 1.52
5126 8230 5.706447 ACTCTACCTAATGACCTGCATAGA 58.294 41.667 0.00 0.00 35.78 1.98
5222 8326 9.579768 GAAGCATATAGATGTGGTATACAAGAG 57.420 37.037 5.01 0.00 43.77 2.85
5227 8331 7.425224 AGGGAAGCATATAGATGTGGTATAC 57.575 40.000 0.00 0.00 35.30 1.47
5232 8336 6.305272 ACATAGGGAAGCATATAGATGTGG 57.695 41.667 0.00 0.00 35.30 4.17
5233 8337 6.155910 AGGACATAGGGAAGCATATAGATGTG 59.844 42.308 0.00 0.00 35.30 3.21
5234 8338 6.155910 CAGGACATAGGGAAGCATATAGATGT 59.844 42.308 0.00 0.00 35.30 3.06
5246 8350 4.017958 TGGCAATAAACAGGACATAGGGAA 60.018 41.667 0.00 0.00 0.00 3.97
5249 8353 4.269183 TGTGGCAATAAACAGGACATAGG 58.731 43.478 0.00 0.00 0.00 2.57
5256 8360 3.989167 CACACATTGTGGCAATAAACAGG 59.011 43.478 20.33 0.00 44.27 4.00
5466 8575 6.599356 TGTAGCAGTAATTGTCTAGTGGAA 57.401 37.500 0.00 0.00 0.00 3.53
5467 8576 6.436218 TCTTGTAGCAGTAATTGTCTAGTGGA 59.564 38.462 0.00 0.00 0.00 4.02
5665 8779 9.688592 CAAGAAGATATCAAATAAATGAAGGCC 57.311 33.333 5.32 0.00 32.06 5.19
5765 8879 3.426159 GCAGTTCATCCACAACATAACCG 60.426 47.826 0.00 0.00 0.00 4.44
5888 9002 1.135915 TGACCAACACACCATGCAAAC 59.864 47.619 0.00 0.00 0.00 2.93
5974 9088 1.141053 GAGTGGTGGGACAAGTTCACT 59.859 52.381 0.00 0.00 44.16 3.41
5999 9113 6.929606 GGAGTACCTCACATGTTTGGTATATC 59.070 42.308 22.27 21.09 37.39 1.63
6023 9137 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
6035 9149 9.929722 CATAGCTTGCAAAAACGTCTTATATTA 57.070 29.630 0.00 0.00 0.00 0.98
6060 9174 4.739195 AGACGTTTTTGCAAGCTAAAACA 58.261 34.783 29.55 7.24 45.11 2.83
6061 9175 5.696260 AAGACGTTTTTGCAAGCTAAAAC 57.304 34.783 24.64 24.64 43.14 2.43
6062 9176 9.685828 AATATAAGACGTTTTTGCAAGCTAAAA 57.314 25.926 9.67 9.67 0.00 1.52
6063 9177 9.123709 CAATATAAGACGTTTTTGCAAGCTAAA 57.876 29.630 0.00 0.00 0.00 1.85
6064 9178 8.293867 ACAATATAAGACGTTTTTGCAAGCTAA 58.706 29.630 0.00 0.00 0.00 3.09
6065 9179 7.748683 CACAATATAAGACGTTTTTGCAAGCTA 59.251 33.333 0.00 0.00 0.00 3.32
6066 9180 6.582295 CACAATATAAGACGTTTTTGCAAGCT 59.418 34.615 0.00 0.00 0.00 3.74
6067 9181 6.183359 CCACAATATAAGACGTTTTTGCAAGC 60.183 38.462 0.00 0.00 0.00 4.01
6068 9182 6.307800 CCCACAATATAAGACGTTTTTGCAAG 59.692 38.462 0.00 0.00 0.00 4.01
6069 9183 6.016192 TCCCACAATATAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
6070 9184 5.473846 TCCCACAATATAAGACGTTTTTGCA 59.526 36.000 0.00 0.00 0.00 4.08
6071 9185 5.798434 GTCCCACAATATAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
6072 9186 6.019152 CGTCCCACAATATAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
6073 9187 5.122711 CCGTCCCACAATATAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
6074 9188 4.632688 CCGTCCCACAATATAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
6075 9189 4.081531 TCCGTCCCACAATATAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
6076 9190 3.448301 TCCGTCCCACAATATAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
6077 9191 3.025978 TCCGTCCCACAATATAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
6079 9193 3.244112 CCCTCCGTCCCACAATATAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
6080 9194 2.969950 CCCTCCGTCCCACAATATAAGA 59.030 50.000 0.00 0.00 0.00 2.10
6081 9195 2.969950 TCCCTCCGTCCCACAATATAAG 59.030 50.000 0.00 0.00 0.00 1.73
6082 9196 2.969950 CTCCCTCCGTCCCACAATATAA 59.030 50.000 0.00 0.00 0.00 0.98
6083 9197 2.090943 ACTCCCTCCGTCCCACAATATA 60.091 50.000 0.00 0.00 0.00 0.86
6084 9198 1.344087 ACTCCCTCCGTCCCACAATAT 60.344 52.381 0.00 0.00 0.00 1.28
6085 9199 0.042131 ACTCCCTCCGTCCCACAATA 59.958 55.000 0.00 0.00 0.00 1.90
6086 9200 0.042131 TACTCCCTCCGTCCCACAAT 59.958 55.000 0.00 0.00 0.00 2.71
6087 9201 0.613853 CTACTCCCTCCGTCCCACAA 60.614 60.000 0.00 0.00 0.00 3.33
6088 9202 1.000019 CTACTCCCTCCGTCCCACA 60.000 63.158 0.00 0.00 0.00 4.17
6089 9203 1.000107 ACTACTCCCTCCGTCCCAC 60.000 63.158 0.00 0.00 0.00 4.61
6090 9204 1.000019 CACTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
6091 9205 2.424733 GCACTACTCCCTCCGTCCC 61.425 68.421 0.00 0.00 0.00 4.46
6092 9206 0.971447 AAGCACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
6093 9207 0.896226 AAAGCACTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
6094 9208 1.275573 GAAAAGCACTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
6095 9209 1.275291 TGAAAAGCACTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
6096 9210 3.075148 GTTGAAAAGCACTACTCCCTCC 58.925 50.000 0.00 0.00 0.00 4.30
6097 9211 3.498777 GTGTTGAAAAGCACTACTCCCTC 59.501 47.826 0.00 0.00 33.22 4.30
6098 9212 3.477530 GTGTTGAAAAGCACTACTCCCT 58.522 45.455 0.00 0.00 33.22 4.20
6099 9213 2.552743 GGTGTTGAAAAGCACTACTCCC 59.447 50.000 0.00 0.00 36.03 4.30
6100 9214 2.552743 GGGTGTTGAAAAGCACTACTCC 59.447 50.000 0.00 0.00 36.03 3.85
6101 9215 2.552743 GGGGTGTTGAAAAGCACTACTC 59.447 50.000 0.00 0.00 36.03 2.59
6102 9216 2.583143 GGGGTGTTGAAAAGCACTACT 58.417 47.619 0.00 0.00 36.03 2.57
6119 9233 7.826918 TTATTGGTAAAATATTCGAAGGGGG 57.173 36.000 3.35 0.00 0.00 5.40
6144 9258 3.053826 ACCACCTTTCCACCTTAGAAGT 58.946 45.455 0.00 0.00 0.00 3.01
6188 9305 2.172851 CACCCGTGCAACCTTAAGTA 57.827 50.000 0.97 0.00 0.00 2.24
6202 9323 2.917933 TGGAAATATCAGAAGCACCCG 58.082 47.619 0.00 0.00 0.00 5.28
6204 9325 6.044682 CCATTTTGGAAATATCAGAAGCACC 58.955 40.000 0.00 0.00 40.96 5.01
6216 9337 5.180271 CACTATTGCTGCCATTTTGGAAAT 58.820 37.500 0.00 0.00 40.96 2.17
6419 9556 0.602905 CCTGTTCGTCCTGGTGGTTC 60.603 60.000 0.00 0.00 34.23 3.62
6562 9699 1.227350 CGGGCTCATTCGCATCTCA 60.227 57.895 0.00 0.00 0.00 3.27
6614 9751 2.245438 GACTCCCGAGCCTCCCAAAG 62.245 65.000 0.00 0.00 0.00 2.77
6654 9804 1.207593 GCTTGACGCATGACCACAC 59.792 57.895 0.00 0.00 38.92 3.82
6664 9814 2.405025 GCTTACAAAACATGCTTGACGC 59.595 45.455 13.54 9.10 39.77 5.19
6669 9819 4.339247 ACACTCTGCTTACAAAACATGCTT 59.661 37.500 0.00 0.00 0.00 3.91
6678 9828 1.864711 GCGTGAACACTCTGCTTACAA 59.135 47.619 3.51 0.00 0.00 2.41
6797 9947 5.698832 CAATGTCACGAAAAGGCTAATCAA 58.301 37.500 0.00 0.00 0.00 2.57
6822 9972 0.875059 GTAGAAGCCACAGCCACAAC 59.125 55.000 0.00 0.00 41.25 3.32
6847 9997 1.272147 GGTGGCTCAAGGAACCAAGAT 60.272 52.381 0.00 0.00 34.63 2.40
6850 10000 1.152830 GGGTGGCTCAAGGAACCAA 59.847 57.895 0.00 0.00 34.63 3.67
6852 10002 1.603739 GTGGGTGGCTCAAGGAACC 60.604 63.158 0.00 0.00 0.00 3.62
6853 10003 0.606673 GAGTGGGTGGCTCAAGGAAC 60.607 60.000 0.00 0.00 33.45 3.62
6859 10009 2.842462 ACACGAGTGGGTGGCTCA 60.842 61.111 8.19 0.00 42.23 4.26
6915 10065 5.825532 TGGTCATATGGGTGATCTCAAAAA 58.174 37.500 2.13 0.00 30.47 1.94
6916 10066 5.191522 TCTGGTCATATGGGTGATCTCAAAA 59.808 40.000 2.13 0.00 30.47 2.44
6917 10067 4.721274 TCTGGTCATATGGGTGATCTCAAA 59.279 41.667 2.13 0.00 30.47 2.69
6918 10068 4.297768 TCTGGTCATATGGGTGATCTCAA 58.702 43.478 2.13 0.00 30.47 3.02
6919 10069 3.899980 CTCTGGTCATATGGGTGATCTCA 59.100 47.826 2.13 0.00 30.47 3.27
6920 10070 3.306641 GCTCTGGTCATATGGGTGATCTC 60.307 52.174 2.13 0.00 30.47 2.75
6921 10071 2.636893 GCTCTGGTCATATGGGTGATCT 59.363 50.000 2.13 0.00 30.47 2.75
6922 10072 2.369860 TGCTCTGGTCATATGGGTGATC 59.630 50.000 2.13 0.00 0.00 2.92
6923 10073 2.411583 TGCTCTGGTCATATGGGTGAT 58.588 47.619 2.13 0.00 0.00 3.06
6924 10074 1.878211 TGCTCTGGTCATATGGGTGA 58.122 50.000 2.13 0.00 0.00 4.02
6925 10075 2.715749 TTGCTCTGGTCATATGGGTG 57.284 50.000 2.13 0.00 0.00 4.61
6926 10076 2.684927 GCTTTGCTCTGGTCATATGGGT 60.685 50.000 2.13 0.00 0.00 4.51
6927 10077 1.952296 GCTTTGCTCTGGTCATATGGG 59.048 52.381 2.13 0.00 0.00 4.00
6928 10078 1.600957 CGCTTTGCTCTGGTCATATGG 59.399 52.381 2.13 0.00 0.00 2.74
6929 10079 1.003116 GCGCTTTGCTCTGGTCATATG 60.003 52.381 0.00 0.00 41.73 1.78
6930 10080 1.303309 GCGCTTTGCTCTGGTCATAT 58.697 50.000 0.00 0.00 41.73 1.78
6931 10081 1.083806 CGCGCTTTGCTCTGGTCATA 61.084 55.000 5.56 0.00 43.27 2.15
6932 10082 2.393768 CGCGCTTTGCTCTGGTCAT 61.394 57.895 5.56 0.00 43.27 3.06
6933 10083 3.043713 CGCGCTTTGCTCTGGTCA 61.044 61.111 5.56 0.00 43.27 4.02
6934 10084 3.793144 CCGCGCTTTGCTCTGGTC 61.793 66.667 5.56 0.00 43.27 4.02
6935 10085 4.314440 TCCGCGCTTTGCTCTGGT 62.314 61.111 5.56 0.00 43.27 4.00
6936 10086 3.793144 GTCCGCGCTTTGCTCTGG 61.793 66.667 5.56 0.00 43.27 3.86
6937 10087 3.043713 TGTCCGCGCTTTGCTCTG 61.044 61.111 5.56 0.00 43.27 3.35
7341 10492 2.024414 GCTTGCCGGATAGGAAAACAT 58.976 47.619 5.05 0.00 45.00 2.71
7353 10504 1.064505 CATACTTGTCATGCTTGCCGG 59.935 52.381 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.