Multiple sequence alignment - TraesCS5D01G509500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G509500 chr5D 100.000 4654 0 0 1 4654 534615548 534620201 0.000000e+00 8595.0
1 TraesCS5D01G509500 chr5D 93.140 379 24 2 295 672 55016902 55016525 5.260000e-154 555.0
2 TraesCS5D01G509500 chr5D 93.980 299 18 0 1 299 55017235 55016937 1.970000e-123 453.0
3 TraesCS5D01G509500 chr5D 82.246 276 29 10 4066 4324 248589059 248588787 2.180000e-53 220.0
4 TraesCS5D01G509500 chr5D 84.962 133 20 0 3289 3421 534865025 534865157 8.120000e-28 135.0
5 TraesCS5D01G509500 chr4A 88.585 1831 132 28 2324 4086 636972717 636970896 0.000000e+00 2152.0
6 TraesCS5D01G509500 chr4A 87.210 1337 103 34 2782 4066 632749874 632748554 0.000000e+00 1459.0
7 TraesCS5D01G509500 chr4A 89.167 480 29 12 4024 4499 636970880 636970420 1.120000e-160 577.0
8 TraesCS5D01G509500 chr4A 85.213 541 39 24 892 1428 636973212 636972709 6.900000e-143 518.0
9 TraesCS5D01G509500 chr4A 92.949 156 11 0 4453 4608 632748510 632748355 1.300000e-55 228.0
10 TraesCS5D01G509500 chr4A 81.625 283 30 10 4055 4316 731081937 731081656 1.010000e-51 215.0
11 TraesCS5D01G509500 chr4A 84.211 133 21 0 3289 3421 636680099 636679967 3.780000e-26 130.0
12 TraesCS5D01G509500 chr5B 91.682 1118 61 9 2708 3796 674887369 674888483 0.000000e+00 1520.0
13 TraesCS5D01G509500 chr5B 90.524 496 43 2 1426 1918 653002185 653002679 0.000000e+00 652.0
14 TraesCS5D01G509500 chr5B 94.709 378 20 0 295 672 411084939 411084562 5.190000e-164 588.0
15 TraesCS5D01G509500 chr5B 90.777 412 37 1 1920 2331 687882572 687882982 2.450000e-152 549.0
16 TraesCS5D01G509500 chr5B 92.635 353 26 0 295 647 665815555 665815203 4.150000e-140 508.0
17 TraesCS5D01G509500 chr5B 94.170 223 13 0 75 297 688519762 688519984 1.600000e-89 340.0
18 TraesCS5D01G509500 chr5B 92.574 202 15 0 3785 3986 674888515 674888716 1.640000e-74 291.0
19 TraesCS5D01G509500 chr5B 81.006 358 33 15 2324 2651 674887017 674887369 7.730000e-63 252.0
20 TraesCS5D01G509500 chr5B 85.185 270 11 4 892 1140 674885167 674885428 2.780000e-62 250.0
21 TraesCS5D01G509500 chr5B 94.915 118 6 0 182 299 411085091 411084974 7.950000e-43 185.0
22 TraesCS5D01G509500 chr5B 79.152 283 35 10 4065 4324 667842353 667842634 1.720000e-39 174.0
23 TraesCS5D01G509500 chr5B 78.113 265 36 8 4066 4310 608722626 608722364 1.040000e-31 148.0
24 TraesCS5D01G509500 chr5B 84.211 133 21 0 3289 3421 675423380 675423512 3.780000e-26 130.0
25 TraesCS5D01G509500 chr5B 94.872 78 4 0 295 372 688520021 688520098 6.320000e-24 122.0
26 TraesCS5D01G509500 chr5B 95.349 43 2 0 1308 1350 674885665 674885707 8.360000e-08 69.4
27 TraesCS5D01G509500 chr1B 92.555 497 37 0 1422 1918 675307902 675308398 0.000000e+00 713.0
28 TraesCS5D01G509500 chr1B 91.853 491 39 1 1428 1918 95478473 95478962 0.000000e+00 684.0
29 TraesCS5D01G509500 chr1B 92.875 407 23 3 1927 2333 618300053 618300453 1.870000e-163 586.0
30 TraesCS5D01G509500 chr1B 91.686 421 28 5 1918 2336 675310223 675310638 1.120000e-160 577.0
31 TraesCS5D01G509500 chr1B 91.627 418 29 3 1918 2333 423196385 423195972 1.450000e-159 573.0
32 TraesCS5D01G509500 chr1B 91.808 354 28 1 295 647 354654504 354654857 4.180000e-135 492.0
33 TraesCS5D01G509500 chr1B 91.973 299 23 1 1 299 354654172 354654469 7.200000e-113 418.0
34 TraesCS5D01G509500 chr7B 90.964 498 36 6 1425 1918 15927846 15927354 0.000000e+00 662.0
35 TraesCS5D01G509500 chr7B 89.495 495 46 5 1427 1918 392645028 392645519 5.110000e-174 621.0
36 TraesCS5D01G509500 chr7B 91.905 420 29 3 1918 2337 15925783 15925369 2.410000e-162 582.0
37 TraesCS5D01G509500 chr2B 90.669 493 39 6 1426 1918 373314979 373315464 0.000000e+00 649.0
38 TraesCS5D01G509500 chr2B 93.285 417 26 2 1918 2334 373317297 373317711 8.560000e-172 614.0
39 TraesCS5D01G509500 chr2B 93.766 401 24 1 1518 1918 221373274 221372875 6.660000e-168 601.0
40 TraesCS5D01G509500 chr2B 90.676 429 35 3 1918 2341 221371066 221370638 2.430000e-157 566.0
41 TraesCS5D01G509500 chr2B 85.686 503 51 16 1421 1916 705398584 705398096 1.160000e-140 510.0
42 TraesCS5D01G509500 chr2B 90.964 166 11 1 133 298 73379065 73379226 2.180000e-53 220.0
43 TraesCS5D01G509500 chr2B 92.308 130 9 1 1426 1555 532004761 532004633 2.860000e-42 183.0
44 TraesCS5D01G509500 chr2D 93.720 414 24 2 1918 2331 648597425 648597014 1.840000e-173 619.0
45 TraesCS5D01G509500 chr3B 88.377 499 50 6 1423 1918 136096247 136096740 1.110000e-165 593.0
46 TraesCS5D01G509500 chr3B 90.521 422 31 7 1918 2335 59224031 59224447 2.450000e-152 549.0
47 TraesCS5D01G509500 chr3B 82.533 229 28 10 4110 4333 729740191 729740412 1.710000e-44 191.0
48 TraesCS5D01G509500 chr6D 94.517 383 18 1 1918 2300 465951756 465952135 5.190000e-164 588.0
49 TraesCS5D01G509500 chr6D 85.088 228 16 5 4114 4324 454889307 454889533 2.820000e-52 217.0
50 TraesCS5D01G509500 chr6D 84.649 228 17 5 4114 4324 454922862 454923088 1.310000e-50 211.0
51 TraesCS5D01G509500 chr7A 92.857 378 25 2 295 672 33525222 33525597 8.800000e-152 547.0
52 TraesCS5D01G509500 chr7A 91.475 305 19 2 1 299 33524884 33525187 3.350000e-111 412.0
53 TraesCS5D01G509500 chr7A 88.701 177 16 2 4152 4324 696986259 696986083 3.650000e-51 213.0
54 TraesCS5D01G509500 chr7A 84.962 133 20 0 3289 3421 657353200 657353332 8.120000e-28 135.0
55 TraesCS5D01G509500 chr3D 92.663 368 26 1 295 661 121653182 121653549 3.190000e-146 529.0
56 TraesCS5D01G509500 chr3D 95.714 280 12 0 10 289 121652860 121653139 7.100000e-123 451.0
57 TraesCS5D01G509500 chr3D 80.851 282 30 12 4066 4324 94515319 94515599 2.840000e-47 200.0
58 TraesCS5D01G509500 chr3D 84.184 196 28 3 476 670 611534453 611534260 2.210000e-43 187.0
59 TraesCS5D01G509500 chr6B 87.328 363 30 5 317 678 633681632 633681285 7.250000e-108 401.0
60 TraesCS5D01G509500 chr6B 82.292 192 32 2 481 672 62732136 62731947 1.040000e-36 165.0
61 TraesCS5D01G509500 chr5A 84.937 239 19 4 4103 4324 299294861 299295099 4.690000e-55 226.0
62 TraesCS5D01G509500 chr2A 81.818 275 31 13 4067 4325 617486861 617487132 3.650000e-51 213.0
63 TraesCS5D01G509500 chr2A 89.286 168 15 3 133 299 49853623 49853788 1.700000e-49 207.0
64 TraesCS5D01G509500 chr2A 79.433 282 35 11 4063 4324 615257641 615257919 1.330000e-40 178.0
65 TraesCS5D01G509500 chr4B 88.136 177 16 4 4152 4324 561588474 561588299 6.100000e-49 206.0
66 TraesCS5D01G509500 chr1A 83.691 233 20 4 4110 4324 560408000 560407768 2.200000e-48 204.0
67 TraesCS5D01G509500 chr6A 86.207 87 6 3 4065 4151 73820623 73820703 6.410000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G509500 chr5D 534615548 534620201 4653 False 8595.000000 8595 100.0000 1 4654 1 chr5D.!!$F1 4653
1 TraesCS5D01G509500 chr5D 55016525 55017235 710 True 504.000000 555 93.5600 1 672 2 chr5D.!!$R2 671
2 TraesCS5D01G509500 chr4A 636970420 636973212 2792 True 1082.333333 2152 87.6550 892 4499 3 chr4A.!!$R4 3607
3 TraesCS5D01G509500 chr4A 632748355 632749874 1519 True 843.500000 1459 90.0795 2782 4608 2 chr4A.!!$R3 1826
4 TraesCS5D01G509500 chr5B 674885167 674888716 3549 False 476.480000 1520 89.1592 892 3986 5 chr5B.!!$F5 3094
5 TraesCS5D01G509500 chr5B 411084562 411085091 529 True 386.500000 588 94.8120 182 672 2 chr5B.!!$R3 490
6 TraesCS5D01G509500 chr1B 675307902 675310638 2736 False 645.000000 713 92.1205 1422 2336 2 chr1B.!!$F4 914
7 TraesCS5D01G509500 chr1B 354654172 354654857 685 False 455.000000 492 91.8905 1 647 2 chr1B.!!$F3 646
8 TraesCS5D01G509500 chr7B 15925369 15927846 2477 True 622.000000 662 91.4345 1425 2337 2 chr7B.!!$R1 912
9 TraesCS5D01G509500 chr2B 373314979 373317711 2732 False 631.500000 649 91.9770 1426 2334 2 chr2B.!!$F2 908
10 TraesCS5D01G509500 chr2B 221370638 221373274 2636 True 583.500000 601 92.2210 1518 2341 2 chr2B.!!$R3 823
11 TraesCS5D01G509500 chr7A 33524884 33525597 713 False 479.500000 547 92.1660 1 672 2 chr7A.!!$F2 671
12 TraesCS5D01G509500 chr3D 121652860 121653549 689 False 490.000000 529 94.1885 10 661 2 chr3D.!!$F2 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 854 0.034574 TGAAAGCACCACACCAGTGT 60.035 50.0 0.00 0.0 44.39 3.55 F
869 916 0.109153 AAGGGGAAACACGGTACCAC 59.891 55.0 13.54 0.0 40.46 4.16 F
1056 1122 0.181350 GAGCGATTCCCCAAGGTGAT 59.819 55.0 0.00 0.0 0.00 3.06 F
1191 1352 0.524862 ATCGGTCGCTAAGTTGTCGT 59.475 50.0 0.00 0.0 0.00 4.34 F
2604 4968 0.874390 GATTCTGCCACACGAAGCAA 59.126 50.0 0.00 0.0 38.82 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2801 5172 0.171007 CATGTTGCGGATGTTGTCCC 59.829 55.000 0.00 0.0 44.77 4.46 R
2820 5191 1.002366 CCGCATGAGCAGTAACAGAC 58.998 55.000 0.00 0.0 42.27 3.51 R
2863 5235 1.688772 TATAGTCCGAGACCACTGCC 58.311 55.000 1.06 0.0 32.18 4.85 R
3056 5455 4.632153 CCCTTGGCACATATGTAGTAGTC 58.368 47.826 8.32 0.0 39.30 2.59 R
4396 6953 0.106217 CACCAAACCACCACCTCCTT 60.106 55.000 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.000274 GGCGAAGAAGGCAAATTGTGT 60.000 47.619 0.00 0.00 36.61 3.72
76 77 3.558505 CGAAGAAGGCAAATTGTGTGAG 58.441 45.455 0.00 0.00 0.00 3.51
188 189 2.320781 CCCTCGTCAGAACCTATGGAT 58.679 52.381 0.00 0.00 0.00 3.41
257 264 2.027377 CAGAAGAGGAGAATGCAGGTGT 60.027 50.000 0.00 0.00 0.00 4.16
293 300 0.969894 AGGGATAGCAGCGGTATGTC 59.030 55.000 5.26 0.00 0.00 3.06
352 398 6.261158 GGGACTCAAGTTAGCCATTTCTATTC 59.739 42.308 0.00 0.00 0.00 1.75
366 412 7.094805 GCCATTTCTATTCGTGCCAATTCTATA 60.095 37.037 0.00 0.00 0.00 1.31
405 451 4.678509 TTTAGTCATTGTGGACGCAATC 57.321 40.909 8.04 0.00 42.62 2.67
505 551 8.581253 AAAGGCTTTATTAGAGCATTGTAACT 57.419 30.769 11.52 0.00 42.57 2.24
528 574 7.437748 ACTGTGAATCTAATATGGTAGCTCAC 58.562 38.462 0.00 0.00 35.89 3.51
540 586 2.052971 TAGCTCACGCGCTAGCTCAG 62.053 60.000 31.55 8.71 45.92 3.35
546 592 1.953138 CGCGCTAGCTCAGAATGGG 60.953 63.158 13.93 0.00 42.01 4.00
559 605 1.064463 AGAATGGGCGTGTTGATCCAT 60.064 47.619 0.00 0.00 41.31 3.41
606 652 6.386654 TCCCGATTTTATTTCTGCACTTTTC 58.613 36.000 0.00 0.00 0.00 2.29
665 712 2.097825 CCATGAAGGCCTTTTCCTCAG 58.902 52.381 21.54 6.65 34.82 3.35
666 713 2.291153 CCATGAAGGCCTTTTCCTCAGA 60.291 50.000 21.54 0.00 34.82 3.27
667 714 3.424703 CATGAAGGCCTTTTCCTCAGAA 58.575 45.455 21.54 0.00 34.82 3.02
668 715 3.593442 TGAAGGCCTTTTCCTCAGAAA 57.407 42.857 21.54 0.00 40.26 2.52
689 736 4.663636 AAAATTGATCAGTCGTTCGTCC 57.336 40.909 0.00 0.00 0.00 4.79
690 737 1.909376 ATTGATCAGTCGTTCGTCCG 58.091 50.000 0.00 0.00 0.00 4.79
691 738 0.594602 TTGATCAGTCGTTCGTCCGT 59.405 50.000 0.00 0.00 0.00 4.69
692 739 0.109919 TGATCAGTCGTTCGTCCGTG 60.110 55.000 0.00 0.00 0.00 4.94
693 740 0.109873 GATCAGTCGTTCGTCCGTGT 60.110 55.000 0.00 0.00 0.00 4.49
694 741 0.386858 ATCAGTCGTTCGTCCGTGTG 60.387 55.000 0.00 0.00 0.00 3.82
695 742 2.354305 AGTCGTTCGTCCGTGTGC 60.354 61.111 0.00 0.00 0.00 4.57
696 743 3.749373 GTCGTTCGTCCGTGTGCG 61.749 66.667 0.00 0.00 37.95 5.34
699 746 4.349871 GTTCGTCCGTGTGCGCAC 62.350 66.667 33.11 33.11 41.97 5.34
700 747 4.874977 TTCGTCCGTGTGCGCACA 62.875 61.111 37.86 37.86 45.50 4.57
701 748 4.874977 TCGTCCGTGTGCGCACAA 62.875 61.111 42.04 26.15 45.50 3.33
702 749 4.354212 CGTCCGTGTGCGCACAAG 62.354 66.667 42.04 40.10 45.50 3.16
703 750 4.666532 GTCCGTGTGCGCACAAGC 62.667 66.667 42.04 29.46 45.50 4.01
704 751 4.908687 TCCGTGTGCGCACAAGCT 62.909 61.111 42.04 0.00 45.50 3.74
705 752 3.952675 CCGTGTGCGCACAAGCTT 61.953 61.111 42.04 0.00 45.50 3.74
706 753 2.723271 CGTGTGCGCACAAGCTTG 60.723 61.111 42.04 25.05 45.50 4.01
707 754 2.408835 GTGTGCGCACAAGCTTGT 59.591 55.556 42.04 26.36 43.77 3.16
721 768 6.699575 ACAAGCTTGTGATAATATTGACCC 57.300 37.500 30.66 0.00 40.49 4.46
722 769 5.296780 ACAAGCTTGTGATAATATTGACCCG 59.703 40.000 30.66 0.00 40.49 5.28
723 770 4.389374 AGCTTGTGATAATATTGACCCGG 58.611 43.478 0.00 0.00 0.00 5.73
724 771 3.058224 GCTTGTGATAATATTGACCCGGC 60.058 47.826 0.00 0.00 0.00 6.13
725 772 4.389374 CTTGTGATAATATTGACCCGGCT 58.611 43.478 0.00 0.00 0.00 5.52
726 773 5.547465 CTTGTGATAATATTGACCCGGCTA 58.453 41.667 0.00 0.00 0.00 3.93
727 774 5.554437 TGTGATAATATTGACCCGGCTAA 57.446 39.130 0.00 0.00 0.00 3.09
728 775 5.931294 TGTGATAATATTGACCCGGCTAAA 58.069 37.500 0.00 0.00 0.00 1.85
729 776 5.995282 TGTGATAATATTGACCCGGCTAAAG 59.005 40.000 0.00 0.00 0.00 1.85
730 777 5.995897 GTGATAATATTGACCCGGCTAAAGT 59.004 40.000 0.00 0.00 0.00 2.66
731 778 5.995282 TGATAATATTGACCCGGCTAAAGTG 59.005 40.000 0.00 0.00 0.00 3.16
732 779 2.032680 TATTGACCCGGCTAAAGTGC 57.967 50.000 0.00 0.00 0.00 4.40
733 780 0.037590 ATTGACCCGGCTAAAGTGCA 59.962 50.000 0.00 0.00 34.04 4.57
734 781 0.887387 TTGACCCGGCTAAAGTGCAC 60.887 55.000 9.40 9.40 34.04 4.57
735 782 2.358247 ACCCGGCTAAAGTGCACG 60.358 61.111 12.01 0.00 34.04 5.34
736 783 3.124921 CCCGGCTAAAGTGCACGG 61.125 66.667 12.01 6.96 42.30 4.94
737 784 3.799755 CCGGCTAAAGTGCACGGC 61.800 66.667 12.01 13.94 38.89 5.68
738 785 4.147322 CGGCTAAAGTGCACGGCG 62.147 66.667 20.22 20.22 39.00 6.46
739 786 3.047877 GGCTAAAGTGCACGGCGT 61.048 61.111 6.77 6.77 34.04 5.68
740 787 2.173382 GCTAAAGTGCACGGCGTG 59.827 61.111 33.96 33.96 36.51 5.34
741 788 2.860293 CTAAAGTGCACGGCGTGG 59.140 61.111 37.33 21.23 33.64 4.94
742 789 1.666553 CTAAAGTGCACGGCGTGGA 60.667 57.895 37.33 34.07 33.64 4.02
743 790 1.225376 CTAAAGTGCACGGCGTGGAA 61.225 55.000 37.33 21.10 35.32 3.53
744 791 0.604243 TAAAGTGCACGGCGTGGAAT 60.604 50.000 37.33 32.85 35.32 3.01
745 792 2.128853 AAAGTGCACGGCGTGGAATG 62.129 55.000 37.33 15.84 35.32 2.67
754 801 4.483683 CGTGGAATGCGTCGCGTG 62.484 66.667 13.65 0.52 0.00 5.34
755 802 3.411351 GTGGAATGCGTCGCGTGT 61.411 61.111 13.65 3.26 0.00 4.49
756 803 2.089936 GTGGAATGCGTCGCGTGTA 61.090 57.895 13.65 0.00 0.00 2.90
757 804 2.089936 TGGAATGCGTCGCGTGTAC 61.090 57.895 13.65 6.99 0.00 2.90
758 805 2.312061 GAATGCGTCGCGTGTACG 59.688 61.111 13.65 13.74 43.12 3.67
768 815 3.550992 CGTGTACGCACCCATCGC 61.551 66.667 7.29 0.00 42.39 4.58
769 816 2.433491 GTGTACGCACCCATCGCA 60.433 61.111 0.39 0.00 39.61 5.10
770 817 2.433491 TGTACGCACCCATCGCAC 60.433 61.111 0.00 0.00 0.00 5.34
771 818 3.192922 GTACGCACCCATCGCACC 61.193 66.667 0.00 0.00 0.00 5.01
772 819 4.805231 TACGCACCCATCGCACCG 62.805 66.667 0.00 0.00 0.00 4.94
780 827 3.353029 CATCGCACCGTGGCACAA 61.353 61.111 19.09 0.00 44.16 3.33
781 828 3.049674 ATCGCACCGTGGCACAAG 61.050 61.111 19.09 10.77 44.16 3.16
794 841 2.955607 GCACAAGCCAAAATGAAAGC 57.044 45.000 0.00 0.00 33.58 3.51
795 842 2.211806 GCACAAGCCAAAATGAAAGCA 58.788 42.857 0.00 0.00 33.58 3.91
796 843 2.032636 GCACAAGCCAAAATGAAAGCAC 60.033 45.455 0.00 0.00 33.58 4.40
797 844 2.545106 CACAAGCCAAAATGAAAGCACC 59.455 45.455 0.00 0.00 0.00 5.01
798 845 2.170187 ACAAGCCAAAATGAAAGCACCA 59.830 40.909 0.00 0.00 0.00 4.17
799 846 2.531522 AGCCAAAATGAAAGCACCAC 57.468 45.000 0.00 0.00 0.00 4.16
800 847 1.761784 AGCCAAAATGAAAGCACCACA 59.238 42.857 0.00 0.00 0.00 4.17
801 848 1.866601 GCCAAAATGAAAGCACCACAC 59.133 47.619 0.00 0.00 0.00 3.82
802 849 2.482864 CCAAAATGAAAGCACCACACC 58.517 47.619 0.00 0.00 0.00 4.16
803 850 2.158986 CCAAAATGAAAGCACCACACCA 60.159 45.455 0.00 0.00 0.00 4.17
804 851 3.125316 CAAAATGAAAGCACCACACCAG 58.875 45.455 0.00 0.00 0.00 4.00
805 852 2.071778 AATGAAAGCACCACACCAGT 57.928 45.000 0.00 0.00 0.00 4.00
806 853 1.321474 ATGAAAGCACCACACCAGTG 58.679 50.000 0.00 0.00 45.47 3.66
807 854 0.034574 TGAAAGCACCACACCAGTGT 60.035 50.000 0.00 0.00 44.39 3.55
808 855 1.102978 GAAAGCACCACACCAGTGTT 58.897 50.000 0.00 0.00 44.39 3.32
809 856 1.476488 GAAAGCACCACACCAGTGTTT 59.524 47.619 0.00 0.00 44.39 2.83
810 857 1.555967 AAGCACCACACCAGTGTTTT 58.444 45.000 0.00 0.00 44.39 2.43
811 858 1.555967 AGCACCACACCAGTGTTTTT 58.444 45.000 0.00 0.00 44.39 1.94
832 879 4.477302 TTTAGGAAACAAACACGCTAGC 57.523 40.909 4.06 4.06 0.00 3.42
833 880 1.961793 AGGAAACAAACACGCTAGCA 58.038 45.000 16.45 0.00 0.00 3.49
834 881 1.602377 AGGAAACAAACACGCTAGCAC 59.398 47.619 16.45 0.00 0.00 4.40
835 882 1.602377 GGAAACAAACACGCTAGCACT 59.398 47.619 16.45 0.00 0.00 4.40
836 883 2.803956 GGAAACAAACACGCTAGCACTA 59.196 45.455 16.45 0.00 0.00 2.74
837 884 3.435671 GGAAACAAACACGCTAGCACTAT 59.564 43.478 16.45 0.00 0.00 2.12
838 885 4.083484 GGAAACAAACACGCTAGCACTATT 60.083 41.667 16.45 1.16 0.00 1.73
839 886 5.432885 AAACAAACACGCTAGCACTATTT 57.567 34.783 16.45 6.48 0.00 1.40
840 887 4.404507 ACAAACACGCTAGCACTATTTG 57.595 40.909 16.45 19.08 0.00 2.32
841 888 3.813166 ACAAACACGCTAGCACTATTTGT 59.187 39.130 21.48 21.48 34.77 2.83
842 889 4.274950 ACAAACACGCTAGCACTATTTGTT 59.725 37.500 21.48 14.28 35.79 2.83
843 890 5.212194 CAAACACGCTAGCACTATTTGTTT 58.788 37.500 16.45 14.92 36.41 2.83
844 891 5.432885 AACACGCTAGCACTATTTGTTTT 57.567 34.783 16.45 0.00 0.00 2.43
845 892 5.432885 ACACGCTAGCACTATTTGTTTTT 57.567 34.783 16.45 0.00 0.00 1.94
866 913 5.512753 TTTTTAAAGGGGAAACACGGTAC 57.487 39.130 0.00 0.00 40.46 3.34
867 914 2.857186 TAAAGGGGAAACACGGTACC 57.143 50.000 0.16 0.16 40.46 3.34
868 915 0.845337 AAAGGGGAAACACGGTACCA 59.155 50.000 13.54 0.00 40.46 3.25
869 916 0.109153 AAGGGGAAACACGGTACCAC 59.891 55.000 13.54 0.00 40.46 4.16
870 917 0.765519 AGGGGAAACACGGTACCACT 60.766 55.000 13.54 0.00 40.46 4.00
871 918 0.975887 GGGGAAACACGGTACCACTA 59.024 55.000 13.54 0.00 0.00 2.74
872 919 1.066645 GGGGAAACACGGTACCACTAG 60.067 57.143 13.54 0.00 0.00 2.57
873 920 1.895131 GGGAAACACGGTACCACTAGA 59.105 52.381 13.54 0.00 0.00 2.43
874 921 2.498885 GGGAAACACGGTACCACTAGAT 59.501 50.000 13.54 0.00 0.00 1.98
875 922 3.701040 GGGAAACACGGTACCACTAGATA 59.299 47.826 13.54 0.00 0.00 1.98
876 923 4.160252 GGGAAACACGGTACCACTAGATAA 59.840 45.833 13.54 0.00 0.00 1.75
877 924 5.163374 GGGAAACACGGTACCACTAGATAAT 60.163 44.000 13.54 0.00 0.00 1.28
878 925 6.040842 GGGAAACACGGTACCACTAGATAATA 59.959 42.308 13.54 0.00 0.00 0.98
879 926 7.417797 GGGAAACACGGTACCACTAGATAATAA 60.418 40.741 13.54 0.00 0.00 1.40
880 927 7.650903 GGAAACACGGTACCACTAGATAATAAG 59.349 40.741 13.54 0.00 0.00 1.73
881 928 7.651027 AACACGGTACCACTAGATAATAAGT 57.349 36.000 13.54 0.00 0.00 2.24
882 929 7.651027 ACACGGTACCACTAGATAATAAGTT 57.349 36.000 13.54 0.00 0.00 2.66
883 930 8.071177 ACACGGTACCACTAGATAATAAGTTT 57.929 34.615 13.54 0.00 0.00 2.66
884 931 8.534496 ACACGGTACCACTAGATAATAAGTTTT 58.466 33.333 13.54 0.00 0.00 2.43
885 932 9.028185 CACGGTACCACTAGATAATAAGTTTTC 57.972 37.037 13.54 0.00 0.00 2.29
886 933 8.752187 ACGGTACCACTAGATAATAAGTTTTCA 58.248 33.333 13.54 0.00 0.00 2.69
887 934 9.028185 CGGTACCACTAGATAATAAGTTTTCAC 57.972 37.037 13.54 0.00 0.00 3.18
888 935 9.880157 GGTACCACTAGATAATAAGTTTTCACA 57.120 33.333 7.15 0.00 0.00 3.58
926 973 2.189499 GTCATTCCATCTGGCCGGC 61.189 63.158 21.18 21.18 34.44 6.13
956 1003 2.660064 CCCTAGTCCAAGCGTGCCT 61.660 63.158 0.00 0.00 0.00 4.75
957 1004 1.448540 CCTAGTCCAAGCGTGCCTG 60.449 63.158 0.00 0.00 0.00 4.85
1017 1083 2.174319 GCCGCCTCGTCCTCATTTC 61.174 63.158 0.00 0.00 0.00 2.17
1026 1092 2.695666 TCGTCCTCATTTCCTCATCTCC 59.304 50.000 0.00 0.00 0.00 3.71
1056 1122 0.181350 GAGCGATTCCCCAAGGTGAT 59.819 55.000 0.00 0.00 0.00 3.06
1125 1193 3.118775 ACATAGTAGCTGCCATTGTTCGA 60.119 43.478 0.00 0.00 0.00 3.71
1129 1197 0.674895 AGCTGCCATTGTTCGACCTC 60.675 55.000 0.00 0.00 0.00 3.85
1140 1208 1.063764 GTTCGACCTCCTGCTACGTAG 59.936 57.143 18.47 18.47 0.00 3.51
1142 1210 1.140452 TCGACCTCCTGCTACGTAGAT 59.860 52.381 26.53 1.64 0.00 1.98
1191 1352 0.524862 ATCGGTCGCTAAGTTGTCGT 59.475 50.000 0.00 0.00 0.00 4.34
1226 1387 4.141018 TGGTACTAGACATGCCTGGATCTA 60.141 45.833 0.00 0.00 0.00 1.98
1228 1389 5.105554 GGTACTAGACATGCCTGGATCTATG 60.106 48.000 0.00 0.00 0.00 2.23
1229 1390 4.487804 ACTAGACATGCCTGGATCTATGT 58.512 43.478 0.00 1.90 36.54 2.29
1230 1391 4.526262 ACTAGACATGCCTGGATCTATGTC 59.474 45.833 18.10 18.10 45.98 3.06
1233 1394 4.815269 GACATGCCTGGATCTATGTCTAC 58.185 47.826 18.32 2.94 43.62 2.59
1234 1395 4.487804 ACATGCCTGGATCTATGTCTACT 58.512 43.478 0.00 0.00 0.00 2.57
1235 1396 4.526262 ACATGCCTGGATCTATGTCTACTC 59.474 45.833 0.00 0.00 0.00 2.59
1236 1397 4.461450 TGCCTGGATCTATGTCTACTCT 57.539 45.455 0.00 0.00 0.00 3.24
1237 1398 4.809193 TGCCTGGATCTATGTCTACTCTT 58.191 43.478 0.00 0.00 0.00 2.85
1238 1399 4.586421 TGCCTGGATCTATGTCTACTCTTG 59.414 45.833 0.00 0.00 0.00 3.02
1239 1400 4.586841 GCCTGGATCTATGTCTACTCTTGT 59.413 45.833 0.00 0.00 0.00 3.16
1240 1401 5.278758 GCCTGGATCTATGTCTACTCTTGTC 60.279 48.000 0.00 0.00 0.00 3.18
1241 1402 6.068010 CCTGGATCTATGTCTACTCTTGTCT 58.932 44.000 0.00 0.00 0.00 3.41
1242 1403 7.227873 CCTGGATCTATGTCTACTCTTGTCTA 58.772 42.308 0.00 0.00 0.00 2.59
1243 1404 7.721842 CCTGGATCTATGTCTACTCTTGTCTAA 59.278 40.741 0.00 0.00 0.00 2.10
1244 1405 8.453238 TGGATCTATGTCTACTCTTGTCTAAC 57.547 38.462 0.00 0.00 0.00 2.34
1245 1406 7.226918 TGGATCTATGTCTACTCTTGTCTAACG 59.773 40.741 0.00 0.00 0.00 3.18
1246 1407 7.227116 GGATCTATGTCTACTCTTGTCTAACGT 59.773 40.741 0.00 0.00 0.00 3.99
1247 1408 7.304919 TCTATGTCTACTCTTGTCTAACGTG 57.695 40.000 0.00 0.00 0.00 4.49
1248 1409 4.761235 TGTCTACTCTTGTCTAACGTGG 57.239 45.455 0.00 0.00 0.00 4.94
1249 1410 4.392047 TGTCTACTCTTGTCTAACGTGGA 58.608 43.478 0.00 0.00 0.00 4.02
1250 1411 5.008331 TGTCTACTCTTGTCTAACGTGGAT 58.992 41.667 0.00 0.00 0.00 3.41
1251 1412 5.123502 TGTCTACTCTTGTCTAACGTGGATC 59.876 44.000 0.00 0.00 0.00 3.36
1252 1413 5.354792 GTCTACTCTTGTCTAACGTGGATCT 59.645 44.000 0.00 0.00 0.00 2.75
1253 1414 4.442375 ACTCTTGTCTAACGTGGATCTG 57.558 45.455 0.00 0.00 0.00 2.90
1254 1415 3.827302 ACTCTTGTCTAACGTGGATCTGT 59.173 43.478 0.00 0.00 0.00 3.41
1255 1416 4.281182 ACTCTTGTCTAACGTGGATCTGTT 59.719 41.667 0.00 0.00 0.00 3.16
1256 1417 4.556233 TCTTGTCTAACGTGGATCTGTTG 58.444 43.478 0.00 1.42 0.00 3.33
1257 1418 4.038763 TCTTGTCTAACGTGGATCTGTTGT 59.961 41.667 0.00 0.00 0.00 3.32
1258 1419 4.330944 TGTCTAACGTGGATCTGTTGTT 57.669 40.909 0.00 4.36 0.00 2.83
1259 1420 4.304110 TGTCTAACGTGGATCTGTTGTTC 58.696 43.478 0.00 1.64 0.00 3.18
1260 1421 4.038763 TGTCTAACGTGGATCTGTTGTTCT 59.961 41.667 0.00 0.00 0.00 3.01
1261 1422 4.386049 GTCTAACGTGGATCTGTTGTTCTG 59.614 45.833 0.00 0.80 0.00 3.02
1262 1423 2.169832 ACGTGGATCTGTTGTTCTGG 57.830 50.000 0.00 0.00 0.00 3.86
1263 1424 1.416401 ACGTGGATCTGTTGTTCTGGT 59.584 47.619 0.00 0.00 0.00 4.00
1274 1435 1.458398 TGTTCTGGTGTGTGGTGTTG 58.542 50.000 0.00 0.00 0.00 3.33
1284 1449 4.623595 GGTGTGTGGTGTTGTTTACTTTTG 59.376 41.667 0.00 0.00 0.00 2.44
1289 1454 4.561213 GTGGTGTTGTTTACTTTTGTCTGC 59.439 41.667 0.00 0.00 0.00 4.26
1298 1463 9.853555 TTGTTTACTTTTGTCTGCATATATTGG 57.146 29.630 0.00 0.00 0.00 3.16
1303 1468 8.438676 ACTTTTGTCTGCATATATTGGTAGAC 57.561 34.615 11.87 11.87 44.04 2.59
1304 1469 8.267894 ACTTTTGTCTGCATATATTGGTAGACT 58.732 33.333 16.77 1.09 44.08 3.24
1305 1470 8.437360 TTTTGTCTGCATATATTGGTAGACTG 57.563 34.615 16.77 0.00 44.08 3.51
1316 1491 3.599730 TGGTAGACTGCTCATTCACTG 57.400 47.619 0.00 0.00 0.00 3.66
1319 1494 2.758736 AGACTGCTCATTCACTGGTC 57.241 50.000 0.00 0.00 0.00 4.02
1472 1647 3.394588 CGGCGCGCTAAAATCTGA 58.605 55.556 32.29 0.00 0.00 3.27
1717 1914 6.708502 GCCCACAACATAATTAAACCAAGTTT 59.291 34.615 0.00 0.00 39.24 2.66
1772 1970 4.023707 CGAAAGACACAAGAATCAAGCCTT 60.024 41.667 0.00 0.00 0.00 4.35
1793 1991 3.653344 TGTCCTCGTCTTTGTCTTCATG 58.347 45.455 0.00 0.00 0.00 3.07
1803 2004 4.285517 TCTTTGTCTTCATGCTCTTCCTCT 59.714 41.667 0.00 0.00 0.00 3.69
1818 2019 6.040842 GCTCTTCCTCTGATTTATCTGACTCT 59.959 42.308 0.00 0.00 32.42 3.24
2219 4443 1.617755 CGCGCCCAACTCTATATGCG 61.618 60.000 0.00 0.00 44.38 4.73
2242 4486 3.496131 CGCGGTTATTGTGCGCCT 61.496 61.111 4.18 0.00 45.67 5.52
2300 4544 4.484258 TAAATTTGCGGCGCGGCC 62.484 61.111 33.12 19.66 46.75 6.13
2335 4656 2.877168 CCTGTTGGAGATGCTCTAATGC 59.123 50.000 0.00 0.00 33.81 3.56
2398 4730 7.900782 AGTGTGTGTTACTATTCCATGTAAC 57.099 36.000 8.52 8.52 44.96 2.50
2405 4737 9.865321 GTGTTACTATTCCATGTAACTTCACTA 57.135 33.333 14.36 0.00 44.98 2.74
2426 4758 2.226962 AGGCTTTCTGCATGAATGGT 57.773 45.000 0.00 0.00 45.15 3.55
2443 4775 7.563888 TGAATGGTTTTCTGATCTGATCATC 57.436 36.000 19.84 11.78 38.85 2.92
2515 4866 3.667497 TGCATCTCTTTCAGAACGTCT 57.333 42.857 0.00 0.00 33.62 4.18
2593 4955 4.216902 TGTGCATGCTAATATGATTCTGCC 59.783 41.667 20.33 0.00 0.00 4.85
2597 4959 5.696822 CATGCTAATATGATTCTGCCACAC 58.303 41.667 0.00 0.00 0.00 3.82
2598 4960 3.809279 TGCTAATATGATTCTGCCACACG 59.191 43.478 0.00 0.00 0.00 4.49
2599 4961 4.058124 GCTAATATGATTCTGCCACACGA 58.942 43.478 0.00 0.00 0.00 4.35
2600 4962 4.511454 GCTAATATGATTCTGCCACACGAA 59.489 41.667 0.00 0.00 0.00 3.85
2604 4968 0.874390 GATTCTGCCACACGAAGCAA 59.126 50.000 0.00 0.00 38.82 3.91
2618 4982 2.548067 CGAAGCAACCCTCTACACTGTT 60.548 50.000 0.00 0.00 0.00 3.16
2622 4986 2.949644 GCAACCCTCTACACTGTTTTGT 59.050 45.455 0.00 0.00 0.00 2.83
2628 4992 4.455877 CCCTCTACACTGTTTTGTCATTCC 59.544 45.833 0.00 0.00 0.00 3.01
2629 4993 4.455877 CCTCTACACTGTTTTGTCATTCCC 59.544 45.833 0.00 0.00 0.00 3.97
2632 4996 2.357637 ACACTGTTTTGTCATTCCCACG 59.642 45.455 0.00 0.00 0.00 4.94
2640 5004 3.755112 TGTCATTCCCACGTTACTTGA 57.245 42.857 0.00 0.00 0.00 3.02
2665 5036 3.207474 AGAATTGTCGCATGTTGCTTC 57.793 42.857 0.00 0.00 42.25 3.86
2671 5042 1.210931 CGCATGTTGCTTCCCTGTG 59.789 57.895 0.00 0.00 42.25 3.66
2687 5058 8.709646 GCTTCCCTGTGTAATTATTCGTATTAG 58.290 37.037 0.00 0.00 0.00 1.73
2691 5062 9.537192 CCCTGTGTAATTATTCGTATTAGTGAA 57.463 33.333 0.00 0.00 0.00 3.18
2704 5075 5.005779 CGTATTAGTGAAGTTGGATGCTCAC 59.994 44.000 0.00 0.00 0.00 3.51
2713 5084 2.172372 GGATGCTCACGCTCTGCTG 61.172 63.158 0.00 0.00 36.97 4.41
2765 5136 5.171476 CGTGATAGTCAAGATGGTGAAGTT 58.829 41.667 0.00 0.00 0.00 2.66
2766 5137 5.639506 CGTGATAGTCAAGATGGTGAAGTTT 59.360 40.000 0.00 0.00 0.00 2.66
2772 5143 4.515191 GTCAAGATGGTGAAGTTTACAGCA 59.485 41.667 0.00 0.00 46.79 4.41
2774 5145 4.623932 AGATGGTGAAGTTTACAGCAGA 57.376 40.909 0.00 0.00 46.15 4.26
2801 5172 1.003545 CCGCGCAATTATGGACAAGAG 60.004 52.381 8.75 0.00 0.00 2.85
2820 5191 3.700577 GGACAACATCCGCAACATG 57.299 52.632 0.00 0.00 37.88 3.21
2828 5199 2.742053 ACATCCGCAACATGTCTGTTAC 59.258 45.455 0.00 0.00 43.76 2.50
2863 5235 2.183478 TGGTATGTGCTGAACAGTGG 57.817 50.000 0.00 0.00 43.64 4.00
2871 5243 1.149174 CTGAACAGTGGGCAGTGGT 59.851 57.895 0.00 0.00 36.10 4.16
2927 5317 9.595823 TTATAGCCTGTTCTTAATTATATCGCC 57.404 33.333 0.00 0.00 0.00 5.54
2943 5335 6.780706 ATATCGCCTTAATCTAAAACGTGG 57.219 37.500 0.00 0.00 0.00 4.94
3238 5644 9.599866 TCGTCTCTTCATATAAATTGTGTTCAT 57.400 29.630 0.00 0.00 0.00 2.57
3253 5659 5.406649 TGTGTTCATTTGTTCAAACCTGAC 58.593 37.500 0.00 0.00 0.00 3.51
3400 5806 1.715585 GATGTTCGCATGACCGGTG 59.284 57.895 14.63 0.00 38.08 4.94
3442 5848 1.537202 GCGAGAAGGTTGTTGCTTCAT 59.463 47.619 0.00 0.00 0.00 2.57
3451 5857 2.887152 GTTGTTGCTTCATCACCTCCTT 59.113 45.455 0.00 0.00 0.00 3.36
3491 5897 6.656693 ACTCACACCAAAGATCTCAAATAAGG 59.343 38.462 0.00 0.00 0.00 2.69
3549 5959 0.984230 GGTGTCTTGGTCCTGATGGA 59.016 55.000 0.00 0.00 40.69 3.41
3752 6177 4.368874 TCTTCATGTGTGGTGTTTGTTG 57.631 40.909 0.00 0.00 0.00 3.33
3819 6287 9.725019 CATGTATTGCATCCTCCTTTACTTATA 57.275 33.333 0.00 0.00 35.19 0.98
3881 6349 3.852578 TGAAAGAGAAAAGGCTAGGGGAT 59.147 43.478 0.00 0.00 0.00 3.85
3888 6356 4.349342 AGAAAAGGCTAGGGGATGTAGATG 59.651 45.833 0.00 0.00 0.00 2.90
3901 6369 6.284459 GGGATGTAGATGTAGAGACCTTTTG 58.716 44.000 0.00 0.00 0.00 2.44
3923 6398 2.916527 AAATCCCTGCTCGCCATGGG 62.917 60.000 15.13 3.69 40.95 4.00
4101 6655 2.099263 ACTGACGTAAGCGCTCATACAT 59.901 45.455 12.06 0.00 42.83 2.29
4102 6656 3.314357 ACTGACGTAAGCGCTCATACATA 59.686 43.478 12.06 0.00 42.83 2.29
4103 6657 4.023107 ACTGACGTAAGCGCTCATACATAT 60.023 41.667 12.06 0.00 42.83 1.78
4104 6658 4.226761 TGACGTAAGCGCTCATACATATG 58.773 43.478 12.06 6.28 42.83 1.78
4105 6659 2.987149 ACGTAAGCGCTCATACATATGC 59.013 45.455 12.06 0.00 42.83 3.14
4144 6698 1.477740 CCTATGAGCACCTCCGAGAGA 60.478 57.143 0.00 0.00 0.00 3.10
4145 6699 1.606668 CTATGAGCACCTCCGAGAGAC 59.393 57.143 0.00 0.00 0.00 3.36
4146 6700 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
4147 6701 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
4151 6705 0.679640 CACCTCCGAGAGACTGAGCT 60.680 60.000 0.00 0.00 0.00 4.09
4168 6722 4.166523 TGAGCTGAGATTTTACGAAGTCG 58.833 43.478 0.00 0.00 43.93 4.18
4171 6725 2.256174 TGAGATTTTACGAAGTCGCCG 58.744 47.619 0.00 0.00 43.93 6.46
4188 6742 2.327244 GTAGGCGCCTCGTAGTCG 59.673 66.667 36.73 0.00 38.55 4.18
4221 6775 2.815211 CCCACTGGACACGCATCG 60.815 66.667 0.00 0.00 0.00 3.84
4240 6797 2.940410 TCGCCGGAACTGAAATAAATCC 59.060 45.455 5.05 0.00 0.00 3.01
4257 6814 2.936919 TCCAGGATAAATGCGAGCAT 57.063 45.000 4.52 4.52 38.46 3.79
4260 6817 2.483106 CCAGGATAAATGCGAGCATCAG 59.517 50.000 11.26 0.00 35.31 2.90
4273 6830 3.432186 CGAGCATCAGGATTTGAACCCTA 60.432 47.826 0.00 0.00 39.77 3.53
4316 6873 3.387050 CCTACCTAACCATCCTACCACAC 59.613 52.174 0.00 0.00 0.00 3.82
4363 6920 2.525055 CAAACTCACGTGTTTGTTGGG 58.475 47.619 16.51 10.99 46.73 4.12
4366 6923 0.380378 CTCACGTGTTTGTTGGGTGG 59.620 55.000 16.51 0.00 0.00 4.61
4386 6943 3.006430 TGGCAGACGTCACTAATCAAGAA 59.994 43.478 19.50 0.00 0.00 2.52
4387 6944 3.368236 GGCAGACGTCACTAATCAAGAAC 59.632 47.826 19.50 0.00 0.00 3.01
4389 6946 4.143305 GCAGACGTCACTAATCAAGAACAC 60.143 45.833 19.50 0.00 0.00 3.32
4391 6948 6.379386 CAGACGTCACTAATCAAGAACACTA 58.621 40.000 19.50 0.00 0.00 2.74
4392 6949 7.030165 CAGACGTCACTAATCAAGAACACTAT 58.970 38.462 19.50 0.00 0.00 2.12
4393 6950 7.542477 CAGACGTCACTAATCAAGAACACTATT 59.458 37.037 19.50 0.00 0.00 1.73
4394 6951 8.088981 AGACGTCACTAATCAAGAACACTATTT 58.911 33.333 19.50 0.00 0.00 1.40
4395 6952 8.018677 ACGTCACTAATCAAGAACACTATTTG 57.981 34.615 0.00 0.00 0.00 2.32
4396 6953 7.870954 ACGTCACTAATCAAGAACACTATTTGA 59.129 33.333 0.00 0.00 35.52 2.69
4407 6964 4.021102 ACACTATTTGAAGGAGGTGGTG 57.979 45.455 0.00 0.00 0.00 4.17
4414 6971 0.185175 GAAGGAGGTGGTGGTTTGGT 59.815 55.000 0.00 0.00 0.00 3.67
4423 6980 2.698274 GTGGTGGTTTGGTGGATTCTTT 59.302 45.455 0.00 0.00 0.00 2.52
4506 7063 8.725256 TGACTTCACTACCTACTATCCTAAGAT 58.275 37.037 0.00 0.00 36.44 2.40
4507 7064 9.577222 GACTTCACTACCTACTATCCTAAGATT 57.423 37.037 0.00 0.00 33.67 2.40
4513 7070 9.884814 ACTACCTACTATCCTAAGATTGACATT 57.115 33.333 0.00 0.00 33.67 2.71
4543 7100 0.392461 GGAGCATCTACCGTTTGGCA 60.392 55.000 0.00 0.00 34.60 4.92
4546 7103 1.165270 GCATCTACCGTTTGGCACTT 58.835 50.000 0.00 0.00 39.70 3.16
4582 7139 4.644685 AGTACAAGCAAACTCCAACACAAT 59.355 37.500 0.00 0.00 0.00 2.71
4584 7141 3.044986 CAAGCAAACTCCAACACAATCG 58.955 45.455 0.00 0.00 0.00 3.34
4588 7145 4.037923 AGCAAACTCCAACACAATCGAAAT 59.962 37.500 0.00 0.00 0.00 2.17
4589 7146 4.744631 GCAAACTCCAACACAATCGAAATT 59.255 37.500 0.00 0.00 0.00 1.82
4608 7165 2.729028 TATTTGGAAGGCCCTAGTGC 57.271 50.000 0.00 0.00 35.38 4.40
4616 7173 2.501610 GCCCTAGTGCCTCCGAAG 59.498 66.667 0.00 0.00 0.00 3.79
4632 7189 3.855689 CGAAGGTTCATGATTTTGCCT 57.144 42.857 0.00 0.00 0.00 4.75
4633 7190 3.504863 CGAAGGTTCATGATTTTGCCTG 58.495 45.455 0.00 0.00 0.00 4.85
4634 7191 3.674138 CGAAGGTTCATGATTTTGCCTGG 60.674 47.826 0.00 0.00 0.00 4.45
4635 7192 3.173953 AGGTTCATGATTTTGCCTGGA 57.826 42.857 0.00 0.00 0.00 3.86
4636 7193 3.509442 AGGTTCATGATTTTGCCTGGAA 58.491 40.909 0.00 0.00 0.00 3.53
4637 7194 3.512724 AGGTTCATGATTTTGCCTGGAAG 59.487 43.478 0.00 0.00 0.00 3.46
4638 7195 3.256558 GTTCATGATTTTGCCTGGAAGC 58.743 45.455 0.00 0.00 0.00 3.86
4639 7196 2.811410 TCATGATTTTGCCTGGAAGCT 58.189 42.857 0.00 0.00 0.00 3.74
4640 7197 3.966979 TCATGATTTTGCCTGGAAGCTA 58.033 40.909 0.00 0.00 0.00 3.32
4641 7198 3.949754 TCATGATTTTGCCTGGAAGCTAG 59.050 43.478 0.00 0.00 0.00 3.42
4642 7199 2.094675 TGATTTTGCCTGGAAGCTAGC 58.905 47.619 6.62 6.62 0.00 3.42
4643 7200 1.406898 GATTTTGCCTGGAAGCTAGCC 59.593 52.381 12.13 0.00 0.00 3.93
4644 7201 0.405585 TTTTGCCTGGAAGCTAGCCT 59.594 50.000 12.13 0.00 0.00 4.58
4645 7202 1.285280 TTTGCCTGGAAGCTAGCCTA 58.715 50.000 12.13 0.00 0.00 3.93
4646 7203 1.511613 TTGCCTGGAAGCTAGCCTAT 58.488 50.000 12.13 0.00 0.00 2.57
4647 7204 0.761187 TGCCTGGAAGCTAGCCTATG 59.239 55.000 12.13 0.00 0.00 2.23
4648 7205 0.761802 GCCTGGAAGCTAGCCTATGT 59.238 55.000 12.13 0.00 0.00 2.29
4649 7206 1.971357 GCCTGGAAGCTAGCCTATGTA 59.029 52.381 12.13 0.00 0.00 2.29
4650 7207 2.569404 GCCTGGAAGCTAGCCTATGTAT 59.431 50.000 12.13 0.00 0.00 2.29
4651 7208 3.368948 GCCTGGAAGCTAGCCTATGTATC 60.369 52.174 12.13 0.00 0.00 2.24
4652 7209 3.196685 CCTGGAAGCTAGCCTATGTATCC 59.803 52.174 12.13 8.55 0.00 2.59
4653 7210 3.834813 CTGGAAGCTAGCCTATGTATCCA 59.165 47.826 12.13 12.39 34.71 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.648067 TGAACCTCTTCCTCTCACACAAT 59.352 43.478 0.00 0.00 0.00 2.71
73 74 3.426615 GAGACTGAACCTCTTCCTCTCA 58.573 50.000 0.00 0.00 33.30 3.27
76 77 2.815158 AGGAGACTGAACCTCTTCCTC 58.185 52.381 0.00 0.00 41.13 3.71
188 189 0.251386 TTGGCCCAGCATCGGTTTTA 60.251 50.000 0.00 0.00 0.00 1.52
293 300 2.320587 GCTTCCGCTGACACCACAG 61.321 63.158 0.00 0.00 40.43 3.66
344 390 8.783093 CCAATATAGAATTGGCACGAATAGAAA 58.217 33.333 3.95 0.00 41.62 2.52
366 412 7.402054 TGACTAAATTGTCCATCTGTACCAAT 58.598 34.615 0.00 0.00 36.21 3.16
405 451 6.375174 TCATTGAATGGTCAGTATTCTGTTGG 59.625 38.462 5.20 0.00 41.91 3.77
505 551 6.447162 CGTGAGCTACCATATTAGATTCACA 58.553 40.000 13.89 0.00 36.24 3.58
528 574 1.953138 CCCATTCTGAGCTAGCGCG 60.953 63.158 13.99 0.00 42.32 6.86
540 586 1.334869 GATGGATCAACACGCCCATTC 59.665 52.381 0.00 0.00 39.33 2.67
546 592 3.236816 CAAGTTTGATGGATCAACACGC 58.763 45.455 1.42 0.00 45.63 5.34
559 605 0.948678 GCGCCTAACCACAAGTTTGA 59.051 50.000 0.00 0.00 40.05 2.69
667 714 4.377022 CGGACGAACGACTGATCAATTTTT 60.377 41.667 0.00 0.00 35.47 1.94
668 715 3.122948 CGGACGAACGACTGATCAATTTT 59.877 43.478 0.00 0.00 35.47 1.82
669 716 2.666508 CGGACGAACGACTGATCAATTT 59.333 45.455 0.00 0.00 35.47 1.82
670 717 2.259618 CGGACGAACGACTGATCAATT 58.740 47.619 0.00 0.00 35.47 2.32
671 718 1.201647 ACGGACGAACGACTGATCAAT 59.798 47.619 11.62 0.00 37.61 2.57
672 719 0.594602 ACGGACGAACGACTGATCAA 59.405 50.000 11.62 0.00 37.61 2.57
673 720 0.109919 CACGGACGAACGACTGATCA 60.110 55.000 11.62 0.00 37.61 2.92
674 721 0.109873 ACACGGACGAACGACTGATC 60.110 55.000 11.62 0.00 37.61 2.92
675 722 0.386858 CACACGGACGAACGACTGAT 60.387 55.000 11.62 0.00 37.61 2.90
676 723 1.009335 CACACGGACGAACGACTGA 60.009 57.895 11.62 0.00 37.61 3.41
677 724 2.645510 GCACACGGACGAACGACTG 61.646 63.158 10.16 2.55 37.61 3.51
678 725 2.354305 GCACACGGACGAACGACT 60.354 61.111 10.16 0.00 37.61 4.18
679 726 3.749373 CGCACACGGACGAACGAC 61.749 66.667 10.16 0.00 37.61 4.34
698 745 5.296780 CGGGTCAATATTATCACAAGCTTGT 59.703 40.000 26.36 26.36 43.36 3.16
699 746 5.277974 CCGGGTCAATATTATCACAAGCTTG 60.278 44.000 24.84 24.84 0.00 4.01
700 747 4.821805 CCGGGTCAATATTATCACAAGCTT 59.178 41.667 0.00 0.00 0.00 3.74
701 748 4.389374 CCGGGTCAATATTATCACAAGCT 58.611 43.478 0.00 0.00 0.00 3.74
702 749 3.058224 GCCGGGTCAATATTATCACAAGC 60.058 47.826 2.18 0.00 0.00 4.01
703 750 4.389374 AGCCGGGTCAATATTATCACAAG 58.611 43.478 0.00 0.00 0.00 3.16
704 751 4.431416 AGCCGGGTCAATATTATCACAA 57.569 40.909 0.00 0.00 0.00 3.33
705 752 5.554437 TTAGCCGGGTCAATATTATCACA 57.446 39.130 10.79 0.00 0.00 3.58
706 753 5.995897 ACTTTAGCCGGGTCAATATTATCAC 59.004 40.000 10.79 0.00 0.00 3.06
707 754 5.995282 CACTTTAGCCGGGTCAATATTATCA 59.005 40.000 10.79 0.00 0.00 2.15
708 755 5.106673 GCACTTTAGCCGGGTCAATATTATC 60.107 44.000 10.79 0.00 0.00 1.75
709 756 4.760204 GCACTTTAGCCGGGTCAATATTAT 59.240 41.667 10.79 0.00 0.00 1.28
710 757 4.131596 GCACTTTAGCCGGGTCAATATTA 58.868 43.478 10.79 0.00 0.00 0.98
711 758 2.949644 GCACTTTAGCCGGGTCAATATT 59.050 45.455 10.79 0.00 0.00 1.28
712 759 2.092646 TGCACTTTAGCCGGGTCAATAT 60.093 45.455 10.79 0.00 0.00 1.28
713 760 1.279558 TGCACTTTAGCCGGGTCAATA 59.720 47.619 10.79 0.00 0.00 1.90
714 761 0.037590 TGCACTTTAGCCGGGTCAAT 59.962 50.000 10.79 0.00 0.00 2.57
715 762 0.887387 GTGCACTTTAGCCGGGTCAA 60.887 55.000 10.79 4.30 0.00 3.18
716 763 1.302192 GTGCACTTTAGCCGGGTCA 60.302 57.895 10.79 0.00 0.00 4.02
717 764 2.388232 CGTGCACTTTAGCCGGGTC 61.388 63.158 10.79 0.00 0.00 4.46
718 765 2.358247 CGTGCACTTTAGCCGGGT 60.358 61.111 16.19 12.58 0.00 5.28
719 766 3.124921 CCGTGCACTTTAGCCGGG 61.125 66.667 16.19 1.69 41.50 5.73
720 767 3.799755 GCCGTGCACTTTAGCCGG 61.800 66.667 16.19 10.36 45.18 6.13
721 768 4.147322 CGCCGTGCACTTTAGCCG 62.147 66.667 16.19 0.00 0.00 5.52
722 769 3.047877 ACGCCGTGCACTTTAGCC 61.048 61.111 16.19 0.00 0.00 3.93
723 770 2.173382 CACGCCGTGCACTTTAGC 59.827 61.111 16.19 11.21 0.00 3.09
724 771 1.225376 TTCCACGCCGTGCACTTTAG 61.225 55.000 12.68 6.12 31.34 1.85
725 772 0.604243 ATTCCACGCCGTGCACTTTA 60.604 50.000 12.68 0.00 31.34 1.85
726 773 1.896660 ATTCCACGCCGTGCACTTT 60.897 52.632 12.68 0.00 31.34 2.66
727 774 2.281484 ATTCCACGCCGTGCACTT 60.281 55.556 12.68 0.00 31.34 3.16
728 775 3.049674 CATTCCACGCCGTGCACT 61.050 61.111 12.68 0.00 31.34 4.40
729 776 4.759096 GCATTCCACGCCGTGCAC 62.759 66.667 12.68 6.82 37.52 4.57
732 779 4.147322 GACGCATTCCACGCCGTG 62.147 66.667 10.95 10.95 33.63 4.94
737 784 4.483683 CACGCGACGCATTCCACG 62.484 66.667 21.35 3.75 0.00 4.94
738 785 2.089936 TACACGCGACGCATTCCAC 61.090 57.895 21.35 0.00 0.00 4.02
739 786 2.089936 GTACACGCGACGCATTCCA 61.090 57.895 21.35 0.00 0.00 3.53
740 787 2.693285 GTACACGCGACGCATTCC 59.307 61.111 21.35 0.00 0.00 3.01
741 788 2.312061 CGTACACGCGACGCATTC 59.688 61.111 21.35 4.21 32.89 2.67
752 799 2.433491 TGCGATGGGTGCGTACAC 60.433 61.111 5.86 1.35 46.66 2.90
753 800 2.433491 GTGCGATGGGTGCGTACA 60.433 61.111 5.86 0.00 42.58 2.90
754 801 3.192922 GGTGCGATGGGTGCGTAC 61.193 66.667 0.00 0.00 42.36 3.67
755 802 4.805231 CGGTGCGATGGGTGCGTA 62.805 66.667 0.00 0.00 34.24 4.42
763 810 3.313007 CTTGTGCCACGGTGCGATG 62.313 63.158 1.68 0.00 0.00 3.84
764 811 3.049674 CTTGTGCCACGGTGCGAT 61.050 61.111 1.68 0.00 0.00 4.58
775 822 2.032636 GTGCTTTCATTTTGGCTTGTGC 60.033 45.455 0.00 0.00 38.76 4.57
776 823 2.545106 GGTGCTTTCATTTTGGCTTGTG 59.455 45.455 0.00 0.00 0.00 3.33
777 824 2.170187 TGGTGCTTTCATTTTGGCTTGT 59.830 40.909 0.00 0.00 0.00 3.16
778 825 2.545106 GTGGTGCTTTCATTTTGGCTTG 59.455 45.455 0.00 0.00 0.00 4.01
779 826 2.170187 TGTGGTGCTTTCATTTTGGCTT 59.830 40.909 0.00 0.00 0.00 4.35
780 827 1.761784 TGTGGTGCTTTCATTTTGGCT 59.238 42.857 0.00 0.00 0.00 4.75
781 828 1.866601 GTGTGGTGCTTTCATTTTGGC 59.133 47.619 0.00 0.00 0.00 4.52
782 829 2.158986 TGGTGTGGTGCTTTCATTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
783 830 3.125316 CTGGTGTGGTGCTTTCATTTTG 58.875 45.455 0.00 0.00 0.00 2.44
784 831 2.765699 ACTGGTGTGGTGCTTTCATTTT 59.234 40.909 0.00 0.00 0.00 1.82
785 832 2.101249 CACTGGTGTGGTGCTTTCATTT 59.899 45.455 0.00 0.00 40.33 2.32
786 833 1.682854 CACTGGTGTGGTGCTTTCATT 59.317 47.619 0.00 0.00 40.33 2.57
787 834 1.321474 CACTGGTGTGGTGCTTTCAT 58.679 50.000 0.00 0.00 40.33 2.57
788 835 2.792500 CACTGGTGTGGTGCTTTCA 58.208 52.632 0.00 0.00 40.33 2.69
789 836 1.476488 AAACACTGGTGTGGTGCTTTC 59.524 47.619 7.16 0.00 44.45 2.62
790 837 1.555967 AAACACTGGTGTGGTGCTTT 58.444 45.000 7.16 0.00 44.45 3.51
791 838 1.555967 AAAACACTGGTGTGGTGCTT 58.444 45.000 7.16 0.00 44.45 3.91
792 839 1.555967 AAAAACACTGGTGTGGTGCT 58.444 45.000 7.16 0.00 44.45 4.40
809 856 5.163642 TGCTAGCGTGTTTGTTTCCTAAAAA 60.164 36.000 10.77 0.00 0.00 1.94
810 857 4.335874 TGCTAGCGTGTTTGTTTCCTAAAA 59.664 37.500 10.77 0.00 0.00 1.52
811 858 3.878103 TGCTAGCGTGTTTGTTTCCTAAA 59.122 39.130 10.77 0.00 0.00 1.85
812 859 3.249080 GTGCTAGCGTGTTTGTTTCCTAA 59.751 43.478 10.77 0.00 0.00 2.69
813 860 2.803956 GTGCTAGCGTGTTTGTTTCCTA 59.196 45.455 10.77 0.00 0.00 2.94
814 861 1.602377 GTGCTAGCGTGTTTGTTTCCT 59.398 47.619 10.77 0.00 0.00 3.36
815 862 1.602377 AGTGCTAGCGTGTTTGTTTCC 59.398 47.619 10.77 0.00 0.00 3.13
816 863 4.663636 ATAGTGCTAGCGTGTTTGTTTC 57.336 40.909 10.77 0.00 0.00 2.78
817 864 5.212194 CAAATAGTGCTAGCGTGTTTGTTT 58.788 37.500 21.37 10.36 0.00 2.83
818 865 4.274950 ACAAATAGTGCTAGCGTGTTTGTT 59.725 37.500 25.91 16.47 35.50 2.83
819 866 3.813166 ACAAATAGTGCTAGCGTGTTTGT 59.187 39.130 25.91 25.91 34.55 2.83
820 867 4.404507 ACAAATAGTGCTAGCGTGTTTG 57.595 40.909 25.01 25.01 0.00 2.93
821 868 5.432885 AAACAAATAGTGCTAGCGTGTTT 57.567 34.783 10.77 14.72 33.97 2.83
822 869 5.432885 AAAACAAATAGTGCTAGCGTGTT 57.567 34.783 10.77 9.97 0.00 3.32
823 870 5.432885 AAAAACAAATAGTGCTAGCGTGT 57.567 34.783 10.77 4.37 0.00 4.49
844 891 4.340666 GGTACCGTGTTTCCCCTTTAAAAA 59.659 41.667 0.00 0.00 0.00 1.94
845 892 3.888323 GGTACCGTGTTTCCCCTTTAAAA 59.112 43.478 0.00 0.00 0.00 1.52
846 893 3.117738 TGGTACCGTGTTTCCCCTTTAAA 60.118 43.478 7.57 0.00 0.00 1.52
847 894 2.441001 TGGTACCGTGTTTCCCCTTTAA 59.559 45.455 7.57 0.00 0.00 1.52
848 895 2.053244 TGGTACCGTGTTTCCCCTTTA 58.947 47.619 7.57 0.00 0.00 1.85
849 896 0.845337 TGGTACCGTGTTTCCCCTTT 59.155 50.000 7.57 0.00 0.00 3.11
850 897 0.109153 GTGGTACCGTGTTTCCCCTT 59.891 55.000 7.57 0.00 0.00 3.95
851 898 0.765519 AGTGGTACCGTGTTTCCCCT 60.766 55.000 7.57 0.00 0.00 4.79
852 899 0.975887 TAGTGGTACCGTGTTTCCCC 59.024 55.000 7.57 0.00 0.00 4.81
853 900 1.895131 TCTAGTGGTACCGTGTTTCCC 59.105 52.381 7.57 0.00 0.00 3.97
854 901 3.881937 ATCTAGTGGTACCGTGTTTCC 57.118 47.619 7.57 0.00 0.00 3.13
855 902 8.193438 ACTTATTATCTAGTGGTACCGTGTTTC 58.807 37.037 7.57 0.00 0.00 2.78
856 903 8.071177 ACTTATTATCTAGTGGTACCGTGTTT 57.929 34.615 7.57 0.00 0.00 2.83
857 904 7.651027 ACTTATTATCTAGTGGTACCGTGTT 57.349 36.000 7.57 0.00 0.00 3.32
858 905 7.651027 AACTTATTATCTAGTGGTACCGTGT 57.349 36.000 7.57 0.00 0.00 4.49
859 906 8.937634 AAAACTTATTATCTAGTGGTACCGTG 57.062 34.615 7.57 0.00 0.00 4.94
860 907 8.752187 TGAAAACTTATTATCTAGTGGTACCGT 58.248 33.333 7.57 0.00 0.00 4.83
861 908 9.028185 GTGAAAACTTATTATCTAGTGGTACCG 57.972 37.037 7.57 0.00 0.00 4.02
862 909 9.880157 TGTGAAAACTTATTATCTAGTGGTACC 57.120 33.333 4.43 4.43 0.00 3.34
880 927 2.680841 GCCCAAAGGGTTTTGTGAAAAC 59.319 45.455 3.68 3.76 46.51 2.43
881 928 2.356227 GGCCCAAAGGGTTTTGTGAAAA 60.356 45.455 3.68 0.00 46.51 2.29
882 929 1.210722 GGCCCAAAGGGTTTTGTGAAA 59.789 47.619 3.68 0.00 46.51 2.69
883 930 0.833949 GGCCCAAAGGGTTTTGTGAA 59.166 50.000 3.68 0.00 46.51 3.18
884 931 1.395826 CGGCCCAAAGGGTTTTGTGA 61.396 55.000 0.00 0.00 46.51 3.58
885 932 1.068921 CGGCCCAAAGGGTTTTGTG 59.931 57.895 0.00 0.00 46.51 3.33
886 933 2.137528 CCGGCCCAAAGGGTTTTGT 61.138 57.895 0.00 0.00 46.51 2.83
887 934 2.740438 CCGGCCCAAAGGGTTTTG 59.260 61.111 0.00 0.00 46.51 2.44
888 935 2.525629 CCCGGCCCAAAGGGTTTT 60.526 61.111 5.29 0.00 46.51 2.43
926 973 1.677637 GACTAGGGCCGTGAAGGAGG 61.678 65.000 8.57 0.00 45.00 4.30
956 1003 3.006537 GCTTTATAGGACGGGTGCTATCA 59.993 47.826 14.90 3.51 42.16 2.15
957 1004 3.006537 TGCTTTATAGGACGGGTGCTATC 59.993 47.826 14.90 3.65 42.16 2.08
1017 1083 3.371021 CCGATCCGGGAGATGAGG 58.629 66.667 0.00 0.00 44.15 3.86
1026 1092 2.479412 GAATCGCTCTCCCGATCCGG 62.479 65.000 0.00 0.00 46.29 5.14
1043 1109 1.691219 GCTGGATCACCTTGGGGAA 59.309 57.895 0.00 0.00 37.04 3.97
1044 1110 2.308722 GGCTGGATCACCTTGGGGA 61.309 63.158 0.00 0.00 37.04 4.81
1056 1122 1.371183 CAGTCAAACGAGGGCTGGA 59.629 57.895 0.00 0.00 0.00 3.86
1125 1193 6.593807 CCTATATATCTACGTAGCAGGAGGT 58.406 44.000 18.00 0.00 0.00 3.85
1129 1197 4.319622 GCGCCTATATATCTACGTAGCAGG 60.320 50.000 18.00 15.41 0.00 4.85
1140 1208 2.286301 GGACGACGAGCGCCTATATATC 60.286 54.545 2.29 0.00 46.04 1.63
1142 1210 1.081892 GGACGACGAGCGCCTATATA 58.918 55.000 2.29 0.00 46.04 0.86
1191 1352 5.737860 TGTCTAGTACCAGTCGAACATCTA 58.262 41.667 0.00 0.00 0.00 1.98
1203 1364 2.543037 TCCAGGCATGTCTAGTACCA 57.457 50.000 0.00 0.00 0.00 3.25
1226 1387 5.008331 TCCACGTTAGACAAGAGTAGACAT 58.992 41.667 0.00 0.00 0.00 3.06
1228 1389 5.354792 AGATCCACGTTAGACAAGAGTAGAC 59.645 44.000 0.00 0.00 0.00 2.59
1229 1390 5.354513 CAGATCCACGTTAGACAAGAGTAGA 59.645 44.000 0.00 0.00 0.00 2.59
1230 1391 5.124138 ACAGATCCACGTTAGACAAGAGTAG 59.876 44.000 0.00 0.00 0.00 2.57
1232 1393 3.827302 ACAGATCCACGTTAGACAAGAGT 59.173 43.478 0.00 0.00 0.00 3.24
1233 1394 4.442375 ACAGATCCACGTTAGACAAGAG 57.558 45.455 0.00 0.00 0.00 2.85
1234 1395 4.038763 ACAACAGATCCACGTTAGACAAGA 59.961 41.667 0.00 0.00 0.00 3.02
1235 1396 4.307432 ACAACAGATCCACGTTAGACAAG 58.693 43.478 0.00 0.00 0.00 3.16
1236 1397 4.330944 ACAACAGATCCACGTTAGACAA 57.669 40.909 0.00 0.00 0.00 3.18
1237 1398 4.038763 AGAACAACAGATCCACGTTAGACA 59.961 41.667 0.00 0.00 0.00 3.41
1238 1399 4.386049 CAGAACAACAGATCCACGTTAGAC 59.614 45.833 0.00 0.00 0.00 2.59
1239 1400 4.556233 CAGAACAACAGATCCACGTTAGA 58.444 43.478 0.00 0.00 0.00 2.10
1240 1401 3.679980 CCAGAACAACAGATCCACGTTAG 59.320 47.826 0.00 0.00 0.00 2.34
1241 1402 3.070446 ACCAGAACAACAGATCCACGTTA 59.930 43.478 0.00 0.00 0.00 3.18
1242 1403 2.158813 ACCAGAACAACAGATCCACGTT 60.159 45.455 0.00 0.00 0.00 3.99
1243 1404 1.416401 ACCAGAACAACAGATCCACGT 59.584 47.619 0.00 0.00 0.00 4.49
1244 1405 1.800586 CACCAGAACAACAGATCCACG 59.199 52.381 0.00 0.00 0.00 4.94
1245 1406 2.549754 CACACCAGAACAACAGATCCAC 59.450 50.000 0.00 0.00 0.00 4.02
1246 1407 2.172505 ACACACCAGAACAACAGATCCA 59.827 45.455 0.00 0.00 0.00 3.41
1247 1408 2.549754 CACACACCAGAACAACAGATCC 59.450 50.000 0.00 0.00 0.00 3.36
1248 1409 2.549754 CCACACACCAGAACAACAGATC 59.450 50.000 0.00 0.00 0.00 2.75
1249 1410 2.092429 ACCACACACCAGAACAACAGAT 60.092 45.455 0.00 0.00 0.00 2.90
1250 1411 1.280710 ACCACACACCAGAACAACAGA 59.719 47.619 0.00 0.00 0.00 3.41
1251 1412 1.401552 CACCACACACCAGAACAACAG 59.598 52.381 0.00 0.00 0.00 3.16
1252 1413 1.271652 ACACCACACACCAGAACAACA 60.272 47.619 0.00 0.00 0.00 3.33
1253 1414 1.459450 ACACCACACACCAGAACAAC 58.541 50.000 0.00 0.00 0.00 3.32
1254 1415 1.815613 CAACACCACACACCAGAACAA 59.184 47.619 0.00 0.00 0.00 2.83
1255 1416 1.271652 ACAACACCACACACCAGAACA 60.272 47.619 0.00 0.00 0.00 3.18
1256 1417 1.459450 ACAACACCACACACCAGAAC 58.541 50.000 0.00 0.00 0.00 3.01
1257 1418 2.208132 AACAACACCACACACCAGAA 57.792 45.000 0.00 0.00 0.00 3.02
1258 1419 2.208132 AAACAACACCACACACCAGA 57.792 45.000 0.00 0.00 0.00 3.86
1259 1420 3.013921 AGTAAACAACACCACACACCAG 58.986 45.455 0.00 0.00 0.00 4.00
1260 1421 3.074675 AGTAAACAACACCACACACCA 57.925 42.857 0.00 0.00 0.00 4.17
1261 1422 4.443913 AAAGTAAACAACACCACACACC 57.556 40.909 0.00 0.00 0.00 4.16
1262 1423 5.224135 ACAAAAGTAAACAACACCACACAC 58.776 37.500 0.00 0.00 0.00 3.82
1263 1424 5.241949 AGACAAAAGTAAACAACACCACACA 59.758 36.000 0.00 0.00 0.00 3.72
1284 1449 5.788450 AGCAGTCTACCAATATATGCAGAC 58.212 41.667 0.00 7.62 38.71 3.51
1289 1454 8.093307 AGTGAATGAGCAGTCTACCAATATATG 58.907 37.037 0.00 0.00 0.00 1.78
1298 1463 3.516615 GACCAGTGAATGAGCAGTCTAC 58.483 50.000 0.00 0.00 0.00 2.59
1300 1465 1.277557 GGACCAGTGAATGAGCAGTCT 59.722 52.381 0.00 0.00 0.00 3.24
1302 1467 0.326264 GGGACCAGTGAATGAGCAGT 59.674 55.000 0.00 0.00 0.00 4.40
1303 1468 0.742281 CGGGACCAGTGAATGAGCAG 60.742 60.000 0.00 0.00 0.00 4.24
1304 1469 1.296392 CGGGACCAGTGAATGAGCA 59.704 57.895 0.00 0.00 0.00 4.26
1305 1470 2.109126 GCGGGACCAGTGAATGAGC 61.109 63.158 0.00 0.00 0.00 4.26
1316 1491 0.394352 ATGAACATTCTGGCGGGACC 60.394 55.000 0.00 0.00 39.84 4.46
1319 1494 1.434696 GCATGAACATTCTGGCGGG 59.565 57.895 0.00 0.00 0.00 6.13
1567 1742 5.798125 TGTGCCCAAAATGAGAATAAACA 57.202 34.783 0.00 0.00 0.00 2.83
1568 1743 7.671495 ATTTGTGCCCAAAATGAGAATAAAC 57.329 32.000 0.00 0.00 43.43 2.01
1717 1914 7.812191 GTCATCATAAACTTGGTTTGCATGTTA 59.188 33.333 5.99 0.00 36.37 2.41
1772 1970 3.653344 CATGAAGACAAAGACGAGGACA 58.347 45.455 0.00 0.00 0.00 4.02
1793 1991 6.040842 AGAGTCAGATAAATCAGAGGAAGAGC 59.959 42.308 0.00 0.00 0.00 4.09
1803 2004 6.565234 GTCTTCGGAAGAGTCAGATAAATCA 58.435 40.000 20.23 0.00 43.69 2.57
2242 4486 2.512286 GCTAGTGCATCGCCAGCA 60.512 61.111 0.00 0.00 40.19 4.41
2248 4492 1.200103 CGCAATCGCTAGTGCATCG 59.800 57.895 11.33 0.00 46.89 3.84
2279 4523 2.578445 GCGCCGCAAATTTACCCG 60.578 61.111 3.15 0.00 0.00 5.28
2300 4544 1.852067 AACAGGCGCGCTAAACAAGG 61.852 55.000 32.29 13.32 0.00 3.61
2367 4688 8.657074 TGGAATAGTAACACACACTAATATGC 57.343 34.615 0.00 0.00 32.47 3.14
2373 4694 8.991243 GTTACATGGAATAGTAACACACACTA 57.009 34.615 9.77 0.00 45.73 2.74
2374 4695 7.900782 GTTACATGGAATAGTAACACACACT 57.099 36.000 9.77 0.00 45.73 3.55
2398 4730 2.771089 TGCAGAAAGCCTGTAGTGAAG 58.229 47.619 0.00 0.00 44.71 3.02
2405 4737 1.822990 CCATTCATGCAGAAAGCCTGT 59.177 47.619 0.00 0.00 44.71 4.00
2426 4758 9.435688 TTTAAACGAGATGATCAGATCAGAAAA 57.564 29.630 18.13 7.05 43.53 2.29
2459 4791 9.260002 CAGCCATAATAAACTGAAACAAAAACT 57.740 29.630 0.00 0.00 31.67 2.66
2466 4806 5.576774 GCAACCAGCCATAATAAACTGAAAC 59.423 40.000 0.00 0.00 37.23 2.78
2474 4814 4.680172 GCAACATGCAACCAGCCATAATAA 60.680 41.667 0.00 0.00 44.26 1.40
2475 4815 3.181477 GCAACATGCAACCAGCCATAATA 60.181 43.478 0.00 0.00 44.26 0.98
2476 4816 2.419021 GCAACATGCAACCAGCCATAAT 60.419 45.455 0.00 0.00 44.26 1.28
2477 4817 1.067000 GCAACATGCAACCAGCCATAA 60.067 47.619 0.00 0.00 44.26 1.90
2584 4946 0.250252 TGCTTCGTGTGGCAGAATCA 60.250 50.000 0.00 0.00 34.22 2.57
2593 4955 1.270094 TGTAGAGGGTTGCTTCGTGTG 60.270 52.381 0.00 0.00 0.00 3.82
2597 4959 1.000955 ACAGTGTAGAGGGTTGCTTCG 59.999 52.381 0.00 0.00 0.00 3.79
2598 4960 2.841442 ACAGTGTAGAGGGTTGCTTC 57.159 50.000 0.00 0.00 0.00 3.86
2599 4961 3.577805 AAACAGTGTAGAGGGTTGCTT 57.422 42.857 0.00 0.00 0.00 3.91
2600 4962 3.214328 CAAAACAGTGTAGAGGGTTGCT 58.786 45.455 0.00 0.00 0.00 3.91
2604 4968 4.706842 ATGACAAAACAGTGTAGAGGGT 57.293 40.909 0.00 0.00 0.00 4.34
2618 4982 4.452825 TCAAGTAACGTGGGAATGACAAA 58.547 39.130 0.00 0.00 0.00 2.83
2660 5024 4.839121 ACGAATAATTACACAGGGAAGCA 58.161 39.130 0.00 0.00 0.00 3.91
2661 5025 7.492352 AATACGAATAATTACACAGGGAAGC 57.508 36.000 0.00 0.00 0.00 3.86
2665 5036 9.537192 TTCACTAATACGAATAATTACACAGGG 57.463 33.333 0.00 0.00 0.00 4.45
2704 5075 1.506493 ACTCAAAGAACAGCAGAGCG 58.494 50.000 0.00 0.00 0.00 5.03
2713 5084 9.368674 GGTAAGATAAGTTCCTACTCAAAGAAC 57.631 37.037 0.00 0.00 40.14 3.01
2765 5136 2.193532 CGGAGCTCCTCTGCTGTAA 58.806 57.895 29.73 0.00 44.17 2.41
2766 5137 3.926003 CGGAGCTCCTCTGCTGTA 58.074 61.111 29.73 0.00 44.17 2.74
2801 5172 0.171007 CATGTTGCGGATGTTGTCCC 59.829 55.000 0.00 0.00 44.77 4.46
2814 5185 4.670992 GCATGAGCAGTAACAGACATGTTG 60.671 45.833 0.00 3.12 44.44 3.33
2817 5188 2.030091 CGCATGAGCAGTAACAGACATG 59.970 50.000 0.00 0.00 42.27 3.21
2819 5190 1.672737 CCGCATGAGCAGTAACAGACA 60.673 52.381 0.00 0.00 42.27 3.41
2820 5191 1.002366 CCGCATGAGCAGTAACAGAC 58.998 55.000 0.00 0.00 42.27 3.51
2863 5235 1.688772 TATAGTCCGAGACCACTGCC 58.311 55.000 1.06 0.00 32.18 4.85
3047 5442 8.548721 GGCACATATGTAGTAGTCACATTTTAC 58.451 37.037 8.32 0.00 37.74 2.01
3056 5455 4.632153 CCCTTGGCACATATGTAGTAGTC 58.368 47.826 8.32 0.00 39.30 2.59
3083 5482 7.064728 GTGAGTACACTCCAAATTTGGTAGATC 59.935 40.741 31.41 21.27 41.86 2.75
3238 5644 3.191581 TGAAAGCGTCAGGTTTGAACAAA 59.808 39.130 0.22 0.00 46.67 2.83
3285 5691 8.905103 ATATGTAAACAAAATGTAAGAACGGC 57.095 30.769 0.00 0.00 0.00 5.68
3356 5762 2.280628 CAACTTCCTCGGCAATAGTCC 58.719 52.381 0.00 0.00 0.00 3.85
3367 5773 2.301577 ACATCGCTAGCAACTTCCTC 57.698 50.000 16.45 0.00 0.00 3.71
3451 5857 1.961394 GTGAGTGTGTGACCCTGACTA 59.039 52.381 0.00 0.00 0.00 2.59
3491 5897 1.151668 CTATTATGGTGGCTGAGCGC 58.848 55.000 0.00 0.00 38.13 5.92
3569 5984 3.228453 GACACCTTGGGACGATCCTATA 58.772 50.000 0.00 0.00 36.57 1.31
3570 5985 2.040178 GACACCTTGGGACGATCCTAT 58.960 52.381 0.00 0.00 36.57 2.57
3644 6063 7.936847 ACAAGAGATGTAAGTCACCACATTAAA 59.063 33.333 0.00 0.00 41.63 1.52
3752 6177 6.113411 AGCCAGTTATGTGTTTATGGTAGAC 58.887 40.000 0.00 0.00 0.00 2.59
3819 6287 6.310149 AGGAGAATTCAAAAACACTCATCCT 58.690 36.000 8.44 3.58 0.00 3.24
3881 6349 9.793259 ATTTTTCAAAAGGTCTCTACATCTACA 57.207 29.630 0.00 0.00 0.00 2.74
3888 6356 6.570571 GCAGGGATTTTTCAAAAGGTCTCTAC 60.571 42.308 0.76 0.00 0.00 2.59
3901 6369 1.106285 ATGGCGAGCAGGGATTTTTC 58.894 50.000 0.00 0.00 0.00 2.29
4077 6631 0.876399 TGAGCGCTTACGTCAGTACA 59.124 50.000 13.26 0.00 42.83 2.90
4101 6655 3.418913 GGTGTGTGTGCGCGCATA 61.419 61.111 38.62 32.89 37.46 3.14
4105 6659 3.411351 GTAGGGTGTGTGTGCGCG 61.411 66.667 0.00 0.00 0.00 6.86
4144 6698 5.140747 ACTTCGTAAAATCTCAGCTCAGT 57.859 39.130 0.00 0.00 0.00 3.41
4145 6699 4.264145 CGACTTCGTAAAATCTCAGCTCAG 59.736 45.833 0.00 0.00 34.11 3.35
4146 6700 4.166523 CGACTTCGTAAAATCTCAGCTCA 58.833 43.478 0.00 0.00 34.11 4.26
4147 6701 3.000575 GCGACTTCGTAAAATCTCAGCTC 60.001 47.826 0.00 0.00 42.22 4.09
4151 6705 2.256174 CGGCGACTTCGTAAAATCTCA 58.744 47.619 0.00 0.00 42.22 3.27
4171 6725 2.327244 CGACTACGAGGCGCCTAC 59.673 66.667 32.97 21.51 41.27 3.18
4221 6775 3.066760 CCTGGATTTATTTCAGTTCCGGC 59.933 47.826 0.00 0.00 32.50 6.13
4240 6797 2.483106 CCTGATGCTCGCATTTATCCTG 59.517 50.000 5.79 0.00 36.70 3.86
4257 6814 3.561313 GCCAACTAGGGTTCAAATCCTGA 60.561 47.826 4.76 0.00 40.54 3.86
4273 6830 0.550147 AGTGGTATCCCCAGCCAACT 60.550 55.000 0.00 0.00 46.45 3.16
4288 6845 1.141053 GGATGGTTAGGTAGGCAGTGG 59.859 57.143 0.00 0.00 0.00 4.00
4289 6846 2.119495 AGGATGGTTAGGTAGGCAGTG 58.881 52.381 0.00 0.00 0.00 3.66
4290 6847 2.570386 AGGATGGTTAGGTAGGCAGT 57.430 50.000 0.00 0.00 0.00 4.40
4292 6849 2.022820 TGGTAGGATGGTTAGGTAGGCA 60.023 50.000 0.00 0.00 0.00 4.75
4293 6850 2.367894 GTGGTAGGATGGTTAGGTAGGC 59.632 54.545 0.00 0.00 0.00 3.93
4294 6851 3.387050 GTGTGGTAGGATGGTTAGGTAGG 59.613 52.174 0.00 0.00 0.00 3.18
4295 6852 3.067742 CGTGTGGTAGGATGGTTAGGTAG 59.932 52.174 0.00 0.00 0.00 3.18
4296 6853 3.025978 CGTGTGGTAGGATGGTTAGGTA 58.974 50.000 0.00 0.00 0.00 3.08
4316 6873 6.939627 TGATTACTCGCAATATTAACCAACG 58.060 36.000 0.00 0.00 0.00 4.10
4361 6918 0.249398 ATTAGTGACGTCTGCCACCC 59.751 55.000 17.92 0.00 34.00 4.61
4363 6920 2.363788 TGATTAGTGACGTCTGCCAC 57.636 50.000 17.92 7.07 0.00 5.01
4366 6923 3.987868 TGTTCTTGATTAGTGACGTCTGC 59.012 43.478 17.92 9.73 0.00 4.26
4376 6933 8.887717 CCTCCTTCAAATAGTGTTCTTGATTAG 58.112 37.037 0.00 0.00 0.00 1.73
4378 6935 7.175641 CACCTCCTTCAAATAGTGTTCTTGATT 59.824 37.037 0.00 0.00 0.00 2.57
4386 6943 3.244911 CCACCACCTCCTTCAAATAGTGT 60.245 47.826 0.00 0.00 0.00 3.55
4387 6944 3.244911 ACCACCACCTCCTTCAAATAGTG 60.245 47.826 0.00 0.00 0.00 2.74
4389 6946 3.721087 ACCACCACCTCCTTCAAATAG 57.279 47.619 0.00 0.00 0.00 1.73
4391 6948 2.965147 CAAACCACCACCTCCTTCAAAT 59.035 45.455 0.00 0.00 0.00 2.32
4392 6949 2.383855 CAAACCACCACCTCCTTCAAA 58.616 47.619 0.00 0.00 0.00 2.69
4393 6950 1.410932 CCAAACCACCACCTCCTTCAA 60.411 52.381 0.00 0.00 0.00 2.69
4394 6951 0.184933 CCAAACCACCACCTCCTTCA 59.815 55.000 0.00 0.00 0.00 3.02
4395 6952 0.185175 ACCAAACCACCACCTCCTTC 59.815 55.000 0.00 0.00 0.00 3.46
4396 6953 0.106217 CACCAAACCACCACCTCCTT 60.106 55.000 0.00 0.00 0.00 3.36
4407 6964 3.996363 GCATCAAAAGAATCCACCAAACC 59.004 43.478 0.00 0.00 0.00 3.27
4414 6971 4.689071 GCATCATGCATCAAAAGAATCCA 58.311 39.130 4.20 0.00 44.26 3.41
4437 6994 6.294397 GCAACCTGATTTTCATGACTTCTTCT 60.294 38.462 0.00 0.00 0.00 2.85
4438 6995 5.860716 GCAACCTGATTTTCATGACTTCTTC 59.139 40.000 0.00 0.00 0.00 2.87
4439 6996 5.279156 GGCAACCTGATTTTCATGACTTCTT 60.279 40.000 0.00 0.00 0.00 2.52
4530 7087 2.422597 CATCAAGTGCCAAACGGTAGA 58.577 47.619 0.00 0.00 0.00 2.59
4582 7139 3.976015 AGGGCCTTCCAAATAATTTCGA 58.024 40.909 0.00 0.00 38.24 3.71
4584 7141 5.451937 GCACTAGGGCCTTCCAAATAATTTC 60.452 44.000 13.45 0.00 38.24 2.17
4588 7145 3.012934 GCACTAGGGCCTTCCAAATAA 57.987 47.619 13.45 0.00 38.24 1.40
4589 7146 2.729028 GCACTAGGGCCTTCCAAATA 57.271 50.000 13.45 0.00 38.24 1.40
4609 7166 3.428045 GGCAAAATCATGAACCTTCGGAG 60.428 47.826 0.00 0.00 0.00 4.63
4610 7167 2.491693 GGCAAAATCATGAACCTTCGGA 59.508 45.455 0.00 0.00 0.00 4.55
4611 7168 2.493278 AGGCAAAATCATGAACCTTCGG 59.507 45.455 0.00 0.00 0.00 4.30
4612 7169 3.504863 CAGGCAAAATCATGAACCTTCG 58.495 45.455 0.00 0.00 0.00 3.79
4613 7170 3.511146 TCCAGGCAAAATCATGAACCTTC 59.489 43.478 0.00 0.00 0.00 3.46
4614 7171 3.509442 TCCAGGCAAAATCATGAACCTT 58.491 40.909 0.00 0.00 0.00 3.50
4615 7172 3.173953 TCCAGGCAAAATCATGAACCT 57.826 42.857 0.00 0.00 0.00 3.50
4616 7173 3.853475 CTTCCAGGCAAAATCATGAACC 58.147 45.455 0.00 0.00 0.00 3.62
4617 7174 3.056322 AGCTTCCAGGCAAAATCATGAAC 60.056 43.478 0.00 0.00 34.17 3.18
4618 7175 3.167485 AGCTTCCAGGCAAAATCATGAA 58.833 40.909 0.00 0.00 34.17 2.57
4619 7176 2.811410 AGCTTCCAGGCAAAATCATGA 58.189 42.857 0.00 0.00 34.17 3.07
4620 7177 3.490419 GCTAGCTTCCAGGCAAAATCATG 60.490 47.826 7.70 0.00 34.17 3.07
4621 7178 2.692041 GCTAGCTTCCAGGCAAAATCAT 59.308 45.455 7.70 0.00 34.17 2.45
4622 7179 2.094675 GCTAGCTTCCAGGCAAAATCA 58.905 47.619 7.70 0.00 34.17 2.57
4623 7180 1.406898 GGCTAGCTTCCAGGCAAAATC 59.593 52.381 15.72 0.00 38.41 2.17
4624 7181 1.006400 AGGCTAGCTTCCAGGCAAAAT 59.994 47.619 15.72 0.00 40.87 1.82
4625 7182 0.405585 AGGCTAGCTTCCAGGCAAAA 59.594 50.000 15.72 0.00 40.87 2.44
4626 7183 1.285280 TAGGCTAGCTTCCAGGCAAA 58.715 50.000 15.72 0.00 40.87 3.68
4627 7184 1.141657 CATAGGCTAGCTTCCAGGCAA 59.858 52.381 15.72 0.00 40.87 4.52
4628 7185 0.761187 CATAGGCTAGCTTCCAGGCA 59.239 55.000 15.72 0.00 40.87 4.75
4629 7186 0.761802 ACATAGGCTAGCTTCCAGGC 59.238 55.000 15.72 0.00 38.80 4.85
4630 7187 3.196685 GGATACATAGGCTAGCTTCCAGG 59.803 52.174 15.72 0.00 0.00 4.45
4631 7188 3.834813 TGGATACATAGGCTAGCTTCCAG 59.165 47.826 15.72 3.17 46.17 3.86
4632 7189 3.856900 TGGATACATAGGCTAGCTTCCA 58.143 45.455 15.72 6.64 46.17 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.