Multiple sequence alignment - TraesCS5D01G509300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G509300 chr5D 100.000 5092 0 0 404 5495 534090688 534095779 0.000000e+00 9404.0
1 TraesCS5D01G509300 chr5D 80.732 2159 342 44 976 3107 534027674 534029785 0.000000e+00 1615.0
2 TraesCS5D01G509300 chr5D 80.069 577 74 25 3451 4000 534030108 534030670 1.860000e-104 390.0
3 TraesCS5D01G509300 chr5D 85.209 311 46 0 4173 4483 532550067 532549757 2.470000e-83 320.0
4 TraesCS5D01G509300 chr5D 87.023 131 14 1 3617 3747 532550224 532550097 1.600000e-30 145.0
5 TraesCS5D01G509300 chr5D 100.000 42 0 0 1 42 534090285 534090326 1.640000e-10 78.7
6 TraesCS5D01G509300 chr5D 97.059 34 1 0 3736 3769 532550096 532550063 2.140000e-04 58.4
7 TraesCS5D01G509300 chr4A 93.874 4750 171 36 404 5099 637741558 637736875 0.000000e+00 7049.0
8 TraesCS5D01G509300 chr4A 80.222 2159 356 37 976 3107 637896818 637894704 0.000000e+00 1555.0
9 TraesCS5D01G509300 chr4A 93.836 146 8 1 5351 5495 637736874 637736729 9.270000e-53 219.0
10 TraesCS5D01G509300 chr5B 96.768 3961 80 16 1170 5099 674492143 674496086 0.000000e+00 6562.0
11 TraesCS5D01G509300 chr5B 81.095 1936 319 28 975 2899 674337367 674339266 0.000000e+00 1504.0
12 TraesCS5D01G509300 chr5B 84.817 764 56 31 404 1133 674491398 674492135 0.000000e+00 713.0
13 TraesCS5D01G509300 chr5B 82.398 517 61 20 4283 4796 672268769 672268280 1.830000e-114 424.0
14 TraesCS5D01G509300 chr5B 94.558 147 6 2 5351 5495 674496087 674496233 5.540000e-55 226.0
15 TraesCS5D01G509300 chr5B 87.786 131 13 2 3617 3747 672614109 672613982 3.430000e-32 150.0
16 TraesCS5D01G509300 chr5B 97.059 34 1 0 3736 3769 672613981 672613948 2.140000e-04 58.4
17 TraesCS5D01G509300 chrUn 100.000 388 0 0 2600 2987 480256532 480256145 0.000000e+00 717.0
18 TraesCS5D01G509300 chr4D 97.840 324 6 1 404 726 35613351 35613674 4.810000e-155 558.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G509300 chr5D 534090285 534095779 5494 False 4741.350000 9404 100.000000 1 5495 2 chr5D.!!$F2 5494
1 TraesCS5D01G509300 chr5D 534027674 534030670 2996 False 1002.500000 1615 80.400500 976 4000 2 chr5D.!!$F1 3024
2 TraesCS5D01G509300 chr4A 637736729 637741558 4829 True 3634.000000 7049 93.855000 404 5495 2 chr4A.!!$R2 5091
3 TraesCS5D01G509300 chr4A 637894704 637896818 2114 True 1555.000000 1555 80.222000 976 3107 1 chr4A.!!$R1 2131
4 TraesCS5D01G509300 chr5B 674491398 674496233 4835 False 2500.333333 6562 92.047667 404 5495 3 chr5B.!!$F2 5091
5 TraesCS5D01G509300 chr5B 674337367 674339266 1899 False 1504.000000 1504 81.095000 975 2899 1 chr5B.!!$F1 1924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 860 0.413832 TGTGGGCTAGAGTCTCCCTT 59.586 55.0 16.05 0.00 40.69 3.95 F
1020 1096 0.322816 TGGATGTGGAGAAAGCTGCC 60.323 55.0 0.00 0.00 0.00 4.85 F
1509 1618 0.617249 TGGGTTTGGATTCCATGCCC 60.617 55.0 26.33 26.33 43.46 5.36 F
2413 2522 0.178961 AGGCAACAGAAAGGGGGAAC 60.179 55.0 0.00 0.00 41.41 3.62 F
3127 3239 5.535333 GCATTGGCTATGATAAAACATGCT 58.465 37.5 13.15 0.00 36.26 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2239 0.102481 CAGGATCCGTACGAGTTGGG 59.898 60.000 18.76 0.00 0.00 4.12 R
2413 2522 0.171903 GCATAGTTGGTTGGCTGCAG 59.828 55.000 10.11 10.11 0.00 4.41 R
3294 3435 0.166814 GCAACACAGATTGTCGCTCC 59.833 55.000 0.00 0.00 37.51 4.70 R
3444 3589 7.651808 AGGTCAAGTGTTCAAACTATCAATTG 58.348 34.615 0.00 0.00 37.27 2.32 R
5081 5272 1.210967 TCGGCCAAGTTATTGTAGGGG 59.789 52.381 2.24 0.00 34.39 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.249961 GGATCCCCATCCCGGACC 61.250 72.222 0.73 0.00 42.91 4.46
25 26 3.249961 GATCCCCATCCCGGACCC 61.250 72.222 0.73 0.00 36.56 4.46
522 543 4.430765 GCTCGTCCGCGGAAAGGA 62.431 66.667 32.93 24.86 38.89 3.36
523 544 2.260434 CTCGTCCGCGGAAAGGAA 59.740 61.111 32.93 12.54 39.84 3.36
524 545 2.048877 TCGTCCGCGGAAAGGAAC 60.049 61.111 32.93 16.37 39.84 3.62
525 546 3.475774 CGTCCGCGGAAAGGAACG 61.476 66.667 32.93 24.60 39.84 3.95
526 547 2.048877 GTCCGCGGAAAGGAACGA 60.049 61.111 32.93 0.00 39.84 3.85
527 548 2.092882 GTCCGCGGAAAGGAACGAG 61.093 63.158 32.93 0.00 39.84 4.18
528 549 2.813908 CCGCGGAAAGGAACGAGG 60.814 66.667 24.07 0.00 43.15 4.63
529 550 2.260434 CGCGGAAAGGAACGAGGA 59.740 61.111 0.00 0.00 0.00 3.71
530 551 1.805945 CGCGGAAAGGAACGAGGAG 60.806 63.158 0.00 0.00 0.00 3.69
531 552 1.448013 GCGGAAAGGAACGAGGAGG 60.448 63.158 0.00 0.00 0.00 4.30
547 568 1.537990 GGAGGAGAAAGATCGCTGCTC 60.538 57.143 19.14 19.14 45.43 4.26
758 811 2.744202 GGTGTTACCTGCATTCTCAGTG 59.256 50.000 0.00 0.00 34.73 3.66
807 860 0.413832 TGTGGGCTAGAGTCTCCCTT 59.586 55.000 16.05 0.00 40.69 3.95
873 939 4.778143 ATTGGTCCGTCGCTGGCC 62.778 66.667 0.00 0.00 0.00 5.36
903 972 4.206609 CGATTACCTACTTTTAGCTGCGTC 59.793 45.833 0.00 0.00 0.00 5.19
957 1030 4.621991 TCTTGTGCTTGAGTAGTTGAGTC 58.378 43.478 0.00 0.00 0.00 3.36
958 1031 4.099419 TCTTGTGCTTGAGTAGTTGAGTCA 59.901 41.667 0.00 0.00 35.59 3.41
960 1033 3.384789 TGTGCTTGAGTAGTTGAGTCAGT 59.615 43.478 0.00 0.00 38.76 3.41
961 1034 3.738282 GTGCTTGAGTAGTTGAGTCAGTG 59.262 47.826 0.00 0.00 38.76 3.66
962 1035 3.384789 TGCTTGAGTAGTTGAGTCAGTGT 59.615 43.478 0.00 0.00 38.76 3.55
963 1036 3.738282 GCTTGAGTAGTTGAGTCAGTGTG 59.262 47.826 0.00 0.00 38.76 3.82
964 1037 4.499865 GCTTGAGTAGTTGAGTCAGTGTGA 60.500 45.833 0.00 0.00 38.76 3.58
1020 1096 0.322816 TGGATGTGGAGAAAGCTGCC 60.323 55.000 0.00 0.00 0.00 4.85
1110 1186 2.214216 CGGAGGCGGGGGATATTCA 61.214 63.158 0.00 0.00 0.00 2.57
1152 1242 8.792633 CAAATGTTTTCTAGGAATCAAGTGGTA 58.207 33.333 0.00 0.00 0.00 3.25
1153 1243 8.934023 AATGTTTTCTAGGAATCAAGTGGTAA 57.066 30.769 0.00 0.00 0.00 2.85
1189 1281 9.695526 TGATTCATTTTCACAAATAGAAACAGG 57.304 29.630 0.00 0.00 34.94 4.00
1190 1282 9.143631 GATTCATTTTCACAAATAGAAACAGGG 57.856 33.333 0.00 0.00 34.94 4.45
1191 1283 6.991938 TCATTTTCACAAATAGAAACAGGGG 58.008 36.000 0.00 0.00 34.94 4.79
1192 1284 4.864704 TTTCACAAATAGAAACAGGGGC 57.135 40.909 0.00 0.00 30.56 5.80
1193 1285 3.806949 TCACAAATAGAAACAGGGGCT 57.193 42.857 0.00 0.00 0.00 5.19
1214 1306 1.301558 GCTGCTGAGCTCACACACT 60.302 57.895 13.74 0.00 42.52 3.55
1215 1307 0.883814 GCTGCTGAGCTCACACACTT 60.884 55.000 13.74 0.00 42.52 3.16
1217 1309 2.064762 CTGCTGAGCTCACACACTTAC 58.935 52.381 13.74 0.00 0.00 2.34
1228 1325 2.124411 ACACACTTACCCTGTCCTTGT 58.876 47.619 0.00 0.00 0.00 3.16
1232 1329 2.904434 CACTTACCCTGTCCTTGTAGGT 59.096 50.000 0.00 0.00 36.53 3.08
1238 1335 3.522343 ACCCTGTCCTTGTAGGTAATTCC 59.478 47.826 0.00 0.00 36.53 3.01
1283 1380 4.203076 ATGCCGAGTACGCCGTCC 62.203 66.667 0.00 0.00 38.29 4.79
1321 1423 4.083003 TCGGGTGCATCATCTTTTTGTTAC 60.083 41.667 0.00 0.00 0.00 2.50
1324 1426 5.337491 GGGTGCATCATCTTTTTGTTACCAT 60.337 40.000 0.00 0.00 0.00 3.55
1509 1618 0.617249 TGGGTTTGGATTCCATGCCC 60.617 55.000 26.33 26.33 43.46 5.36
1538 1647 2.446036 ATCTGGACCCTACCCGGC 60.446 66.667 0.00 0.00 0.00 6.13
1567 1676 1.094785 CGGGCAACATACCTTCCAAG 58.905 55.000 0.00 0.00 39.74 3.61
1665 1774 2.014857 GACCGGTTTAGAATGGAAGCC 58.985 52.381 9.42 0.00 0.00 4.35
1814 1923 1.063183 GGGCCTGGAGCTGAGAATAT 58.937 55.000 0.84 0.00 43.05 1.28
2130 2239 1.003696 AGCAGAAGCAGTAGGAAACCC 59.996 52.381 0.00 0.00 45.49 4.11
2190 2299 0.834612 ACGGGTCCAGTCAACAAAGA 59.165 50.000 0.00 0.00 0.00 2.52
2322 2431 3.848272 ACACACAGTCAACAACAAAGG 57.152 42.857 0.00 0.00 0.00 3.11
2331 2440 3.551485 GTCAACAACAAAGGAACATGCAC 59.449 43.478 0.00 0.00 0.00 4.57
2413 2522 0.178961 AGGCAACAGAAAGGGGGAAC 60.179 55.000 0.00 0.00 41.41 3.62
3127 3239 5.535333 GCATTGGCTATGATAAAACATGCT 58.465 37.500 13.15 0.00 36.26 3.79
3444 3589 6.677781 TTAGCTTTGGTATACTGCATTGAC 57.322 37.500 2.25 0.00 0.00 3.18
4971 5157 9.875675 GCTGTATTTATCATGATCTGAAGAAAC 57.124 33.333 12.53 6.84 37.44 2.78
4988 5179 4.906618 AGAAACACATATTTGGTCGTCCT 58.093 39.130 0.00 0.00 34.23 3.85
4997 5188 2.045926 GGTCGTCCTGGCAGCAAT 60.046 61.111 9.56 0.00 0.00 3.56
5004 5195 2.609459 CGTCCTGGCAGCAATAAAGTAG 59.391 50.000 9.56 0.00 0.00 2.57
5013 5204 5.858581 GGCAGCAATAAAGTAGTGAAAACTG 59.141 40.000 0.00 0.00 0.00 3.16
5014 5205 5.858581 GCAGCAATAAAGTAGTGAAAACTGG 59.141 40.000 0.00 0.00 0.00 4.00
5015 5206 6.515035 GCAGCAATAAAGTAGTGAAAACTGGT 60.515 38.462 0.00 0.00 0.00 4.00
5016 5207 6.857964 CAGCAATAAAGTAGTGAAAACTGGTG 59.142 38.462 0.00 0.00 0.00 4.17
5017 5208 6.546034 AGCAATAAAGTAGTGAAAACTGGTGT 59.454 34.615 0.00 0.00 0.00 4.16
5018 5209 7.717875 AGCAATAAAGTAGTGAAAACTGGTGTA 59.282 33.333 0.00 0.00 0.00 2.90
5019 5210 8.512138 GCAATAAAGTAGTGAAAACTGGTGTAT 58.488 33.333 0.00 0.00 0.00 2.29
5023 5214 8.828688 AAAGTAGTGAAAACTGGTGTATAGTC 57.171 34.615 0.00 0.00 0.00 2.59
5024 5215 7.778185 AGTAGTGAAAACTGGTGTATAGTCT 57.222 36.000 0.00 0.00 0.00 3.24
5025 5216 8.191534 AGTAGTGAAAACTGGTGTATAGTCTT 57.808 34.615 0.00 0.00 0.00 3.01
5061 5252 8.094798 ACGATTTATTCTCTTGCAGTTGTAAA 57.905 30.769 0.00 0.00 0.00 2.01
5068 5259 6.304356 TCTCTTGCAGTTGTAAAATCTGTG 57.696 37.500 0.00 0.00 0.00 3.66
5081 5272 9.997482 TTGTAAAATCTGTGTCTACTTTGTTTC 57.003 29.630 0.00 0.00 0.00 2.78
5099 5290 3.375647 TTCCCCTACAATAACTTGGCC 57.624 47.619 0.00 0.00 36.64 5.36
5100 5291 1.210967 TCCCCTACAATAACTTGGCCG 59.789 52.381 0.00 0.00 36.64 6.13
5101 5292 1.210967 CCCCTACAATAACTTGGCCGA 59.789 52.381 0.00 0.00 36.64 5.54
5102 5293 2.356330 CCCCTACAATAACTTGGCCGAA 60.356 50.000 0.00 0.00 36.64 4.30
5103 5294 3.551846 CCCTACAATAACTTGGCCGAAT 58.448 45.455 0.00 0.00 36.64 3.34
5104 5295 3.564225 CCCTACAATAACTTGGCCGAATC 59.436 47.826 0.00 0.00 36.64 2.52
5105 5296 4.451900 CCTACAATAACTTGGCCGAATCT 58.548 43.478 0.00 0.00 36.64 2.40
5106 5297 4.273480 CCTACAATAACTTGGCCGAATCTG 59.727 45.833 0.00 0.00 36.64 2.90
5107 5298 3.950397 ACAATAACTTGGCCGAATCTGA 58.050 40.909 0.00 0.00 36.64 3.27
5108 5299 4.526970 ACAATAACTTGGCCGAATCTGAT 58.473 39.130 0.00 0.00 36.64 2.90
5109 5300 4.949856 ACAATAACTTGGCCGAATCTGATT 59.050 37.500 1.81 1.81 36.64 2.57
5110 5301 5.066505 ACAATAACTTGGCCGAATCTGATTC 59.933 40.000 18.28 18.28 36.64 2.52
5111 5302 3.356529 AACTTGGCCGAATCTGATTCT 57.643 42.857 23.67 4.85 37.13 2.40
5112 5303 2.636830 ACTTGGCCGAATCTGATTCTG 58.363 47.619 23.67 19.37 37.13 3.02
5113 5304 2.026822 ACTTGGCCGAATCTGATTCTGT 60.027 45.455 23.67 12.02 37.13 3.41
5114 5305 2.787473 TGGCCGAATCTGATTCTGTT 57.213 45.000 23.67 0.00 37.13 3.16
5115 5306 3.071874 TGGCCGAATCTGATTCTGTTT 57.928 42.857 23.67 0.00 37.13 2.83
5116 5307 3.420893 TGGCCGAATCTGATTCTGTTTT 58.579 40.909 23.67 0.00 37.13 2.43
5117 5308 3.826157 TGGCCGAATCTGATTCTGTTTTT 59.174 39.130 23.67 0.00 37.13 1.94
5118 5309 4.168760 GGCCGAATCTGATTCTGTTTTTG 58.831 43.478 23.67 9.63 37.13 2.44
5119 5310 4.082787 GGCCGAATCTGATTCTGTTTTTGA 60.083 41.667 23.67 0.00 37.13 2.69
5120 5311 5.091431 GCCGAATCTGATTCTGTTTTTGAG 58.909 41.667 23.67 8.44 37.13 3.02
5121 5312 5.106555 GCCGAATCTGATTCTGTTTTTGAGA 60.107 40.000 23.67 0.00 37.13 3.27
5122 5313 6.568462 GCCGAATCTGATTCTGTTTTTGAGAA 60.568 38.462 23.67 0.00 37.13 2.87
5123 5314 7.362662 CCGAATCTGATTCTGTTTTTGAGAAA 58.637 34.615 23.67 0.00 37.13 2.52
5124 5315 8.025445 CCGAATCTGATTCTGTTTTTGAGAAAT 58.975 33.333 23.67 0.00 37.13 2.17
5125 5316 8.847567 CGAATCTGATTCTGTTTTTGAGAAATG 58.152 33.333 23.67 3.42 37.13 2.32
5126 5317 9.136952 GAATCTGATTCTGTTTTTGAGAAATGG 57.863 33.333 20.37 0.00 36.37 3.16
5127 5318 6.985117 TCTGATTCTGTTTTTGAGAAATGGG 58.015 36.000 0.00 0.00 33.22 4.00
5128 5319 6.550854 TCTGATTCTGTTTTTGAGAAATGGGT 59.449 34.615 0.00 0.00 33.22 4.51
5129 5320 6.514947 TGATTCTGTTTTTGAGAAATGGGTG 58.485 36.000 0.00 0.00 33.22 4.61
5130 5321 6.323482 TGATTCTGTTTTTGAGAAATGGGTGA 59.677 34.615 0.00 0.00 33.22 4.02
5131 5322 6.537453 TTCTGTTTTTGAGAAATGGGTGAA 57.463 33.333 0.00 0.00 0.00 3.18
5132 5323 6.729690 TCTGTTTTTGAGAAATGGGTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
5133 5324 6.748132 TCTGTTTTTGAGAAATGGGTGAATC 58.252 36.000 0.00 0.00 0.00 2.52
5134 5325 6.550854 TCTGTTTTTGAGAAATGGGTGAATCT 59.449 34.615 0.00 0.00 0.00 2.40
5135 5326 6.514947 TGTTTTTGAGAAATGGGTGAATCTG 58.485 36.000 0.00 0.00 0.00 2.90
5136 5327 6.323482 TGTTTTTGAGAAATGGGTGAATCTGA 59.677 34.615 0.00 0.00 0.00 3.27
5137 5328 5.964958 TTTGAGAAATGGGTGAATCTGAC 57.035 39.130 0.00 0.00 0.00 3.51
5138 5329 3.955471 TGAGAAATGGGTGAATCTGACC 58.045 45.455 0.00 0.00 0.00 4.02
5139 5330 3.330405 TGAGAAATGGGTGAATCTGACCA 59.670 43.478 0.00 0.00 34.89 4.02
5140 5331 4.202556 TGAGAAATGGGTGAATCTGACCAA 60.203 41.667 0.00 0.00 36.44 3.67
5141 5332 4.739793 AGAAATGGGTGAATCTGACCAAA 58.260 39.130 0.00 0.00 36.44 3.28
5142 5333 5.336102 AGAAATGGGTGAATCTGACCAAAT 58.664 37.500 0.00 0.00 36.44 2.32
5143 5334 6.493166 AGAAATGGGTGAATCTGACCAAATA 58.507 36.000 0.00 0.00 36.44 1.40
5144 5335 7.128077 AGAAATGGGTGAATCTGACCAAATAT 58.872 34.615 0.00 0.00 36.44 1.28
5145 5336 8.281531 AGAAATGGGTGAATCTGACCAAATATA 58.718 33.333 0.00 0.00 36.44 0.86
5146 5337 9.082313 GAAATGGGTGAATCTGACCAAATATAT 57.918 33.333 0.00 0.00 36.44 0.86
5147 5338 9.438163 AAATGGGTGAATCTGACCAAATATATT 57.562 29.630 0.00 0.00 36.44 1.28
5148 5339 7.822161 TGGGTGAATCTGACCAAATATATTG 57.178 36.000 0.00 0.00 34.89 1.90
5149 5340 7.353525 TGGGTGAATCTGACCAAATATATTGT 58.646 34.615 0.00 0.00 34.89 2.71
5150 5341 8.498575 TGGGTGAATCTGACCAAATATATTGTA 58.501 33.333 0.00 0.00 34.89 2.41
5151 5342 9.520515 GGGTGAATCTGACCAAATATATTGTAT 57.479 33.333 0.00 0.00 34.89 2.29
5168 5359 8.752005 ATATTGTATTTTACACTGGCTCATGT 57.248 30.769 0.00 0.00 38.63 3.21
5169 5360 6.892658 TTGTATTTTACACTGGCTCATGTT 57.107 33.333 0.00 0.00 38.63 2.71
5170 5361 7.987750 TTGTATTTTACACTGGCTCATGTTA 57.012 32.000 0.00 0.00 38.63 2.41
5171 5362 8.574251 TTGTATTTTACACTGGCTCATGTTAT 57.426 30.769 0.00 0.00 38.63 1.89
5172 5363 8.574251 TGTATTTTACACTGGCTCATGTTATT 57.426 30.769 0.00 0.00 32.89 1.40
5173 5364 8.458052 TGTATTTTACACTGGCTCATGTTATTG 58.542 33.333 0.00 0.00 32.89 1.90
5174 5365 4.963276 TTACACTGGCTCATGTTATTGC 57.037 40.909 0.00 0.00 0.00 3.56
5175 5366 3.077484 ACACTGGCTCATGTTATTGCT 57.923 42.857 0.00 0.00 0.00 3.91
5176 5367 4.220693 ACACTGGCTCATGTTATTGCTA 57.779 40.909 0.00 0.00 0.00 3.49
5177 5368 4.588899 ACACTGGCTCATGTTATTGCTAA 58.411 39.130 0.00 0.00 0.00 3.09
5178 5369 5.195940 ACACTGGCTCATGTTATTGCTAAT 58.804 37.500 0.00 0.00 0.00 1.73
5179 5370 5.066893 ACACTGGCTCATGTTATTGCTAATG 59.933 40.000 0.00 0.00 0.00 1.90
5180 5371 4.581824 ACTGGCTCATGTTATTGCTAATGG 59.418 41.667 0.00 0.00 0.00 3.16
5181 5372 3.318839 TGGCTCATGTTATTGCTAATGGC 59.681 43.478 0.00 0.00 42.22 4.40
5182 5373 3.571401 GGCTCATGTTATTGCTAATGGCT 59.429 43.478 0.00 0.00 42.39 4.75
5183 5374 4.543692 GCTCATGTTATTGCTAATGGCTG 58.456 43.478 0.00 0.00 42.39 4.85
5184 5375 4.558095 GCTCATGTTATTGCTAATGGCTGG 60.558 45.833 0.00 0.00 42.39 4.85
5185 5376 3.890756 TCATGTTATTGCTAATGGCTGGG 59.109 43.478 0.00 0.00 42.39 4.45
5186 5377 2.665165 TGTTATTGCTAATGGCTGGGG 58.335 47.619 0.00 0.00 42.39 4.96
5187 5378 1.341209 GTTATTGCTAATGGCTGGGGC 59.659 52.381 0.00 0.00 42.39 5.80
5188 5379 0.555280 TATTGCTAATGGCTGGGGCA 59.445 50.000 0.00 0.00 43.52 5.36
5189 5380 1.044790 ATTGCTAATGGCTGGGGCAC 61.045 55.000 0.00 0.00 41.84 5.01
5190 5381 2.153898 TTGCTAATGGCTGGGGCACT 62.154 55.000 0.00 0.00 41.84 4.40
5191 5382 2.123428 GCTAATGGCTGGGGCACTG 61.123 63.158 0.00 0.00 41.84 3.66
5192 5383 1.304282 CTAATGGCTGGGGCACTGT 59.696 57.895 0.00 0.00 41.84 3.55
5193 5384 0.546122 CTAATGGCTGGGGCACTGTA 59.454 55.000 0.00 0.00 41.84 2.74
5194 5385 0.995803 TAATGGCTGGGGCACTGTAA 59.004 50.000 0.00 0.00 41.84 2.41
5195 5386 0.323725 AATGGCTGGGGCACTGTAAG 60.324 55.000 0.00 0.00 41.84 2.34
5196 5387 2.044946 GGCTGGGGCACTGTAAGG 60.045 66.667 0.00 0.00 40.87 2.69
5197 5388 2.757077 GCTGGGGCACTGTAAGGT 59.243 61.111 0.00 0.00 39.30 3.50
5198 5389 1.074951 GCTGGGGCACTGTAAGGTT 59.925 57.895 0.00 0.00 39.30 3.50
5199 5390 0.960861 GCTGGGGCACTGTAAGGTTC 60.961 60.000 0.00 0.00 39.30 3.62
5200 5391 0.400213 CTGGGGCACTGTAAGGTTCA 59.600 55.000 0.00 0.00 39.30 3.18
5201 5392 0.109723 TGGGGCACTGTAAGGTTCAC 59.890 55.000 0.00 0.00 39.30 3.18
5202 5393 0.109723 GGGGCACTGTAAGGTTCACA 59.890 55.000 0.00 0.00 39.30 3.58
5203 5394 1.477923 GGGGCACTGTAAGGTTCACAA 60.478 52.381 0.00 0.00 39.30 3.33
5204 5395 1.880027 GGGCACTGTAAGGTTCACAAG 59.120 52.381 0.00 0.00 39.30 3.16
5205 5396 2.486548 GGGCACTGTAAGGTTCACAAGA 60.487 50.000 0.00 0.00 39.30 3.02
5206 5397 3.412386 GGCACTGTAAGGTTCACAAGAT 58.588 45.455 0.00 0.00 39.30 2.40
5207 5398 3.437049 GGCACTGTAAGGTTCACAAGATC 59.563 47.826 0.00 0.00 39.30 2.75
5208 5399 4.319177 GCACTGTAAGGTTCACAAGATCT 58.681 43.478 0.00 0.00 39.30 2.75
5209 5400 4.757149 GCACTGTAAGGTTCACAAGATCTT 59.243 41.667 0.88 0.88 39.30 2.40
5210 5401 5.239525 GCACTGTAAGGTTCACAAGATCTTT 59.760 40.000 4.86 0.00 39.30 2.52
5211 5402 6.238759 GCACTGTAAGGTTCACAAGATCTTTT 60.239 38.462 4.86 0.00 39.30 2.27
5212 5403 7.355778 CACTGTAAGGTTCACAAGATCTTTTC 58.644 38.462 4.86 0.00 39.30 2.29
5213 5404 7.227512 CACTGTAAGGTTCACAAGATCTTTTCT 59.772 37.037 4.86 0.00 39.30 2.52
5214 5405 7.227512 ACTGTAAGGTTCACAAGATCTTTTCTG 59.772 37.037 4.86 1.84 39.30 3.02
5215 5406 7.054124 TGTAAGGTTCACAAGATCTTTTCTGT 58.946 34.615 4.86 0.00 33.93 3.41
5216 5407 8.208224 TGTAAGGTTCACAAGATCTTTTCTGTA 58.792 33.333 4.86 0.00 33.93 2.74
5217 5408 9.052759 GTAAGGTTCACAAGATCTTTTCTGTAA 57.947 33.333 4.86 0.00 33.93 2.41
5218 5409 7.736447 AGGTTCACAAGATCTTTTCTGTAAG 57.264 36.000 4.86 0.00 33.93 2.34
5219 5410 7.283329 AGGTTCACAAGATCTTTTCTGTAAGT 58.717 34.615 4.86 0.00 33.93 2.24
5220 5411 8.429641 AGGTTCACAAGATCTTTTCTGTAAGTA 58.570 33.333 4.86 0.00 33.93 2.24
5221 5412 9.052759 GGTTCACAAGATCTTTTCTGTAAGTAA 57.947 33.333 4.86 0.00 33.93 2.24
5243 5434 9.965824 AGTAAAAACTTGGATTATTGTGTTGAG 57.034 29.630 0.00 0.00 0.00 3.02
5244 5435 9.959749 GTAAAAACTTGGATTATTGTGTTGAGA 57.040 29.630 0.00 0.00 0.00 3.27
5246 5437 9.883142 AAAAACTTGGATTATTGTGTTGAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
5248 5439 9.696917 AAACTTGGATTATTGTGTTGAGAAATC 57.303 29.630 0.00 0.00 0.00 2.17
5249 5440 7.530010 ACTTGGATTATTGTGTTGAGAAATCG 58.470 34.615 0.00 0.00 0.00 3.34
5250 5441 7.174946 ACTTGGATTATTGTGTTGAGAAATCGT 59.825 33.333 0.00 0.00 0.00 3.73
5251 5442 7.072177 TGGATTATTGTGTTGAGAAATCGTC 57.928 36.000 0.00 0.00 0.00 4.20
5252 5443 6.183360 TGGATTATTGTGTTGAGAAATCGTCG 60.183 38.462 0.00 0.00 0.00 5.12
5253 5444 2.941891 TTGTGTTGAGAAATCGTCGC 57.058 45.000 0.00 0.00 0.00 5.19
5254 5445 1.859383 TGTGTTGAGAAATCGTCGCA 58.141 45.000 0.00 0.00 33.78 5.10
5255 5446 2.412870 TGTGTTGAGAAATCGTCGCAT 58.587 42.857 0.00 0.00 35.81 4.73
5256 5447 2.411748 TGTGTTGAGAAATCGTCGCATC 59.588 45.455 0.00 0.00 35.81 3.91
5257 5448 1.999735 TGTTGAGAAATCGTCGCATCC 59.000 47.619 0.00 0.00 35.81 3.51
5258 5449 1.327764 GTTGAGAAATCGTCGCATCCC 59.672 52.381 0.00 0.00 35.81 3.85
5259 5450 0.527600 TGAGAAATCGTCGCATCCCG 60.528 55.000 0.00 0.00 30.16 5.14
5260 5451 0.248907 GAGAAATCGTCGCATCCCGA 60.249 55.000 0.00 0.00 45.15 5.14
5267 5458 4.910956 TCGCATCCCGAAGTGAAG 57.089 55.556 0.00 0.00 44.21 3.02
5268 5459 2.272923 TCGCATCCCGAAGTGAAGA 58.727 52.632 0.00 0.00 44.21 2.87
5269 5460 0.173481 TCGCATCCCGAAGTGAAGAG 59.827 55.000 0.00 0.00 44.21 2.85
5270 5461 0.173481 CGCATCCCGAAGTGAAGAGA 59.827 55.000 0.00 0.00 40.02 3.10
5271 5462 1.404181 CGCATCCCGAAGTGAAGAGAA 60.404 52.381 0.00 0.00 40.02 2.87
5272 5463 2.699954 GCATCCCGAAGTGAAGAGAAA 58.300 47.619 0.00 0.00 0.00 2.52
5273 5464 3.074412 GCATCCCGAAGTGAAGAGAAAA 58.926 45.455 0.00 0.00 0.00 2.29
5274 5465 3.502211 GCATCCCGAAGTGAAGAGAAAAA 59.498 43.478 0.00 0.00 0.00 1.94
5275 5466 4.613850 GCATCCCGAAGTGAAGAGAAAAAC 60.614 45.833 0.00 0.00 0.00 2.43
5276 5467 3.128349 TCCCGAAGTGAAGAGAAAAACG 58.872 45.455 0.00 0.00 0.00 3.60
5277 5468 3.128349 CCCGAAGTGAAGAGAAAAACGA 58.872 45.455 0.00 0.00 0.00 3.85
5278 5469 3.746492 CCCGAAGTGAAGAGAAAAACGAT 59.254 43.478 0.00 0.00 0.00 3.73
5279 5470 4.927425 CCCGAAGTGAAGAGAAAAACGATA 59.073 41.667 0.00 0.00 0.00 2.92
5280 5471 5.407387 CCCGAAGTGAAGAGAAAAACGATAA 59.593 40.000 0.00 0.00 0.00 1.75
5281 5472 6.297353 CCGAAGTGAAGAGAAAAACGATAAC 58.703 40.000 0.00 0.00 0.00 1.89
5282 5473 6.001725 CGAAGTGAAGAGAAAAACGATAACG 58.998 40.000 0.00 0.00 45.75 3.18
5300 5491 8.496872 CGATAACGTGGTTTCTTACAAAATTT 57.503 30.769 0.00 0.00 34.56 1.82
5301 5492 8.960075 CGATAACGTGGTTTCTTACAAAATTTT 58.040 29.630 0.00 0.00 34.56 1.82
5304 5495 7.892778 ACGTGGTTTCTTACAAAATTTTTGT 57.107 28.000 25.87 25.87 36.49 2.83
5305 5496 7.734554 ACGTGGTTTCTTACAAAATTTTTGTG 58.265 30.769 29.06 17.71 34.11 3.33
5306 5497 6.680758 CGTGGTTTCTTACAAAATTTTTGTGC 59.319 34.615 29.06 15.42 34.11 4.57
5307 5498 6.680758 GTGGTTTCTTACAAAATTTTTGTGCG 59.319 34.615 29.06 21.09 34.11 5.34
5308 5499 6.183360 TGGTTTCTTACAAAATTTTTGTGCGG 60.183 34.615 29.06 20.14 34.11 5.69
5309 5500 6.036191 GGTTTCTTACAAAATTTTTGTGCGGA 59.964 34.615 29.06 21.53 34.11 5.54
5310 5501 6.576551 TTCTTACAAAATTTTTGTGCGGAC 57.423 33.333 29.06 0.00 34.11 4.79
5311 5502 5.044558 TCTTACAAAATTTTTGTGCGGACC 58.955 37.500 29.06 0.00 34.11 4.46
5312 5503 2.197577 ACAAAATTTTTGTGCGGACCG 58.802 42.857 23.11 10.29 0.00 4.79
5313 5504 2.197577 CAAAATTTTTGTGCGGACCGT 58.802 42.857 16.73 0.00 0.00 4.83
5314 5505 3.181489 ACAAAATTTTTGTGCGGACCGTA 60.181 39.130 23.11 8.50 0.00 4.02
5315 5506 2.981400 AATTTTTGTGCGGACCGTAG 57.019 45.000 16.73 0.00 0.00 3.51
5316 5507 1.886886 ATTTTTGTGCGGACCGTAGT 58.113 45.000 16.73 0.00 0.00 2.73
5317 5508 1.666054 TTTTTGTGCGGACCGTAGTT 58.334 45.000 16.73 0.00 0.00 2.24
5318 5509 2.522836 TTTTGTGCGGACCGTAGTTA 57.477 45.000 16.73 0.00 0.00 2.24
5319 5510 2.068837 TTTGTGCGGACCGTAGTTAG 57.931 50.000 16.73 0.00 0.00 2.34
5320 5511 0.961019 TTGTGCGGACCGTAGTTAGT 59.039 50.000 16.73 0.00 0.00 2.24
5321 5512 0.241749 TGTGCGGACCGTAGTTAGTG 59.758 55.000 16.73 0.00 0.00 2.74
5322 5513 0.242017 GTGCGGACCGTAGTTAGTGT 59.758 55.000 16.73 0.00 0.00 3.55
5323 5514 0.961019 TGCGGACCGTAGTTAGTGTT 59.039 50.000 16.73 0.00 0.00 3.32
5324 5515 1.068333 TGCGGACCGTAGTTAGTGTTC 60.068 52.381 16.73 0.00 0.00 3.18
5325 5516 1.200948 GCGGACCGTAGTTAGTGTTCT 59.799 52.381 16.73 0.00 0.00 3.01
5326 5517 2.352127 GCGGACCGTAGTTAGTGTTCTT 60.352 50.000 16.73 0.00 0.00 2.52
5327 5518 3.240069 CGGACCGTAGTTAGTGTTCTTG 58.760 50.000 5.48 0.00 0.00 3.02
5328 5519 2.991866 GGACCGTAGTTAGTGTTCTTGC 59.008 50.000 0.00 0.00 0.00 4.01
5329 5520 2.991866 GACCGTAGTTAGTGTTCTTGCC 59.008 50.000 0.00 0.00 0.00 4.52
5330 5521 2.366266 ACCGTAGTTAGTGTTCTTGCCA 59.634 45.455 0.00 0.00 0.00 4.92
5331 5522 3.181463 ACCGTAGTTAGTGTTCTTGCCAA 60.181 43.478 0.00 0.00 0.00 4.52
5332 5523 3.810941 CCGTAGTTAGTGTTCTTGCCAAA 59.189 43.478 0.00 0.00 0.00 3.28
5333 5524 4.273969 CCGTAGTTAGTGTTCTTGCCAAAA 59.726 41.667 0.00 0.00 0.00 2.44
5334 5525 5.440685 CGTAGTTAGTGTTCTTGCCAAAAG 58.559 41.667 0.00 0.00 0.00 2.27
5335 5526 4.918810 AGTTAGTGTTCTTGCCAAAAGG 57.081 40.909 0.00 0.00 0.00 3.11
5336 5527 3.068165 AGTTAGTGTTCTTGCCAAAAGGC 59.932 43.478 0.00 0.00 0.00 4.35
5337 5528 1.484038 AGTGTTCTTGCCAAAAGGCA 58.516 45.000 4.86 4.86 43.62 4.75
5408 5601 3.724257 GCTCACTTCCGTTTTTCTTTTCG 59.276 43.478 0.00 0.00 0.00 3.46
5419 5612 7.541437 TCCGTTTTTCTTTTCGTTGTTTTGTAT 59.459 29.630 0.00 0.00 0.00 2.29
5432 5625 8.898761 TCGTTGTTTTGTATATATTCCAGCATT 58.101 29.630 0.00 0.00 0.00 3.56
5445 5639 5.426689 TTCCAGCATTAGAGTCAACAGAT 57.573 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.249961 GGTCCGGGATGGGGATCC 61.250 72.222 1.92 1.92 39.99 3.36
8 9 3.249961 GGGTCCGGGATGGGGATC 61.250 72.222 0.00 0.00 38.76 3.36
522 543 1.135333 GCGATCTTTCTCCTCCTCGTT 59.865 52.381 0.00 0.00 0.00 3.85
523 544 0.741915 GCGATCTTTCTCCTCCTCGT 59.258 55.000 0.00 0.00 0.00 4.18
524 545 1.028905 AGCGATCTTTCTCCTCCTCG 58.971 55.000 0.00 0.00 0.00 4.63
525 546 1.537990 GCAGCGATCTTTCTCCTCCTC 60.538 57.143 0.00 0.00 0.00 3.71
526 547 0.463620 GCAGCGATCTTTCTCCTCCT 59.536 55.000 0.00 0.00 0.00 3.69
527 548 0.463620 AGCAGCGATCTTTCTCCTCC 59.536 55.000 0.00 0.00 0.00 4.30
528 549 1.537990 GGAGCAGCGATCTTTCTCCTC 60.538 57.143 10.87 2.40 36.93 3.71
529 550 0.463620 GGAGCAGCGATCTTTCTCCT 59.536 55.000 10.87 0.00 36.93 3.69
530 551 0.873743 CGGAGCAGCGATCTTTCTCC 60.874 60.000 9.01 9.01 36.72 3.71
531 552 0.873743 CCGGAGCAGCGATCTTTCTC 60.874 60.000 0.00 0.00 0.00 2.87
704 754 4.717313 AGCGCCGGAAGAAACCCC 62.717 66.667 5.05 0.00 0.00 4.95
758 811 0.676782 AGGCAACCCAACGCAGATAC 60.677 55.000 0.00 0.00 37.17 2.24
789 842 1.116308 GAAGGGAGACTCTAGCCCAC 58.884 60.000 1.74 0.00 44.55 4.61
793 846 1.342574 ACAGGGAAGGGAGACTCTAGC 60.343 57.143 1.74 0.00 0.00 3.42
794 847 2.291930 ACACAGGGAAGGGAGACTCTAG 60.292 54.545 1.74 0.00 0.00 2.43
796 849 0.489567 ACACAGGGAAGGGAGACTCT 59.510 55.000 1.74 0.00 0.00 3.24
873 939 5.978322 GCTAAAAGTAGGTAATCGACAGAGG 59.022 44.000 0.00 0.00 0.00 3.69
903 972 7.894376 ATAAAAGCAATCACATTTCACCAAG 57.106 32.000 0.00 0.00 0.00 3.61
957 1030 4.473199 CTGCAAATCAAGATGTCACACTG 58.527 43.478 0.00 0.00 0.00 3.66
958 1031 3.504906 CCTGCAAATCAAGATGTCACACT 59.495 43.478 0.00 0.00 0.00 3.55
960 1033 3.489355 ACCTGCAAATCAAGATGTCACA 58.511 40.909 0.00 0.00 0.00 3.58
961 1034 4.510038 AACCTGCAAATCAAGATGTCAC 57.490 40.909 0.00 0.00 0.00 3.67
962 1035 5.291178 CAAAACCTGCAAATCAAGATGTCA 58.709 37.500 0.00 0.00 0.00 3.58
963 1036 4.687483 CCAAAACCTGCAAATCAAGATGTC 59.313 41.667 0.00 0.00 0.00 3.06
964 1037 4.344679 TCCAAAACCTGCAAATCAAGATGT 59.655 37.500 0.00 0.00 0.00 3.06
965 1038 4.687483 GTCCAAAACCTGCAAATCAAGATG 59.313 41.667 0.00 0.00 0.00 2.90
966 1039 4.344679 TGTCCAAAACCTGCAAATCAAGAT 59.655 37.500 0.00 0.00 0.00 2.40
967 1040 3.703556 TGTCCAAAACCTGCAAATCAAGA 59.296 39.130 0.00 0.00 0.00 3.02
968 1041 4.053295 CTGTCCAAAACCTGCAAATCAAG 58.947 43.478 0.00 0.00 0.00 3.02
1020 1096 1.755783 GAAGCCATGCCCCTTGGAG 60.756 63.158 1.74 0.00 36.26 3.86
1047 1123 0.968405 TGCTCTTGCCCCAATCAAAC 59.032 50.000 0.00 0.00 38.71 2.93
1110 1186 2.386064 TTTGCTTACCCTGCGACGGT 62.386 55.000 0.00 0.00 37.40 4.83
1152 1242 9.868277 TTGTGAAAATGAATCAAGTTTACAGTT 57.132 25.926 6.86 0.00 0.00 3.16
1153 1243 9.868277 TTTGTGAAAATGAATCAAGTTTACAGT 57.132 25.926 6.86 0.00 0.00 3.55
1167 1258 6.518200 GCCCCTGTTTCTATTTGTGAAAATGA 60.518 38.462 0.00 0.00 35.54 2.57
1177 1269 1.619704 GCCCAGCCCCTGTTTCTATTT 60.620 52.381 0.00 0.00 0.00 1.40
1214 1306 5.190330 GGAATTACCTACAAGGACAGGGTAA 59.810 44.000 0.00 0.00 43.62 2.85
1215 1307 4.718276 GGAATTACCTACAAGGACAGGGTA 59.282 45.833 0.00 0.00 37.67 3.69
1217 1309 3.431766 CGGAATTACCTACAAGGACAGGG 60.432 52.174 0.00 0.00 37.67 4.45
1228 1325 4.836736 CCTTCCCATCTACGGAATTACCTA 59.163 45.833 0.00 0.00 38.69 3.08
1232 1329 4.966805 ACTTCCTTCCCATCTACGGAATTA 59.033 41.667 0.00 0.00 38.69 1.40
1238 1335 3.522553 GTCAACTTCCTTCCCATCTACG 58.477 50.000 0.00 0.00 0.00 3.51
1283 1380 1.959226 CCGAACACCCACCGAGTTG 60.959 63.158 0.00 0.00 0.00 3.16
1293 1390 0.392998 AGATGATGCACCCGAACACC 60.393 55.000 0.00 0.00 0.00 4.16
1321 1423 3.126514 CAGTAAGCAGCAAACAGAGATGG 59.873 47.826 0.00 0.00 0.00 3.51
1324 1426 3.181466 TGACAGTAAGCAGCAAACAGAGA 60.181 43.478 0.00 0.00 0.00 3.10
1509 1618 3.570638 CCAGATGAGCTTGCCGCG 61.571 66.667 0.00 0.00 45.59 6.46
1567 1676 3.216800 TCAACTCATCATGGGCAATAGC 58.783 45.455 0.00 0.00 41.10 2.97
1620 1729 2.894126 AGGACTACTCGGCATCTTATGG 59.106 50.000 0.00 0.00 0.00 2.74
1665 1774 2.747855 GCAAACCTCGGAGGCAGG 60.748 66.667 23.84 13.62 39.63 4.85
1770 1879 1.004080 CCTAGATGCCGCCTCCATG 60.004 63.158 0.00 0.00 0.00 3.66
2130 2239 0.102481 CAGGATCCGTACGAGTTGGG 59.898 60.000 18.76 0.00 0.00 4.12
2190 2299 4.564406 CCCACTCTGCTACTGATCTTTTGT 60.564 45.833 0.00 0.00 0.00 2.83
2265 2374 1.210931 CTTGCGCTCAACACCCATG 59.789 57.895 9.73 0.00 0.00 3.66
2322 2431 1.940752 GCATTTGGTGGGTGCATGTTC 60.941 52.381 0.00 0.00 38.68 3.18
2331 2440 2.353610 GGGAGCAGCATTTGGTGGG 61.354 63.158 11.35 0.00 43.24 4.61
2413 2522 0.171903 GCATAGTTGGTTGGCTGCAG 59.828 55.000 10.11 10.11 0.00 4.41
3127 3239 9.202273 GTAACATAATCATTTGTTTTCTTGCCA 57.798 29.630 4.08 0.00 37.29 4.92
3294 3435 0.166814 GCAACACAGATTGTCGCTCC 59.833 55.000 0.00 0.00 37.51 4.70
3444 3589 7.651808 AGGTCAAGTGTTCAAACTATCAATTG 58.348 34.615 0.00 0.00 37.27 2.32
4971 5157 1.670811 GCCAGGACGACCAAATATGTG 59.329 52.381 6.71 0.00 38.94 3.21
4973 5159 1.942657 CTGCCAGGACGACCAAATATG 59.057 52.381 6.71 0.00 38.94 1.78
4988 5179 5.534654 AGTTTTCACTACTTTATTGCTGCCA 59.465 36.000 0.00 0.00 0.00 4.92
4997 5188 9.918630 GACTATACACCAGTTTTCACTACTTTA 57.081 33.333 0.00 0.00 0.00 1.85
5004 5195 5.468746 TGCAAGACTATACACCAGTTTTCAC 59.531 40.000 0.00 0.00 0.00 3.18
5013 5204 6.019801 CGTAGACAAATGCAAGACTATACACC 60.020 42.308 0.00 0.00 0.00 4.16
5014 5205 6.750501 TCGTAGACAAATGCAAGACTATACAC 59.249 38.462 0.00 0.00 0.00 2.90
5015 5206 6.859017 TCGTAGACAAATGCAAGACTATACA 58.141 36.000 0.00 0.00 0.00 2.29
5016 5207 7.932120 ATCGTAGACAAATGCAAGACTATAC 57.068 36.000 0.00 0.00 42.51 1.47
5017 5208 8.942338 AAATCGTAGACAAATGCAAGACTATA 57.058 30.769 0.00 0.00 42.51 1.31
5018 5209 7.849804 AAATCGTAGACAAATGCAAGACTAT 57.150 32.000 0.00 0.00 42.51 2.12
5019 5210 8.942338 ATAAATCGTAGACAAATGCAAGACTA 57.058 30.769 0.00 0.00 42.51 2.59
5020 5211 7.849804 ATAAATCGTAGACAAATGCAAGACT 57.150 32.000 0.00 0.00 42.51 3.24
5021 5212 8.391106 AGAATAAATCGTAGACAAATGCAAGAC 58.609 33.333 0.00 0.00 42.51 3.01
5022 5213 8.492673 AGAATAAATCGTAGACAAATGCAAGA 57.507 30.769 0.00 0.00 42.51 3.02
5023 5214 8.607459 AGAGAATAAATCGTAGACAAATGCAAG 58.393 33.333 0.00 0.00 42.51 4.01
5024 5215 8.492673 AGAGAATAAATCGTAGACAAATGCAA 57.507 30.769 0.00 0.00 42.51 4.08
5025 5216 8.390354 CAAGAGAATAAATCGTAGACAAATGCA 58.610 33.333 0.00 0.00 42.51 3.96
5061 5252 5.070685 GGGGAAACAAAGTAGACACAGATT 58.929 41.667 0.00 0.00 0.00 2.40
5068 5259 7.881751 AGTTATTGTAGGGGAAACAAAGTAGAC 59.118 37.037 0.00 0.00 40.05 2.59
5081 5272 1.210967 TCGGCCAAGTTATTGTAGGGG 59.789 52.381 2.24 0.00 34.39 4.79
5099 5290 8.847567 CATTTCTCAAAAACAGAATCAGATTCG 58.152 33.333 16.09 13.39 43.92 3.34
5100 5291 9.136952 CCATTTCTCAAAAACAGAATCAGATTC 57.863 33.333 14.56 14.56 39.56 2.52
5101 5292 8.092687 CCCATTTCTCAAAAACAGAATCAGATT 58.907 33.333 0.00 0.00 29.89 2.40
5102 5293 7.234166 ACCCATTTCTCAAAAACAGAATCAGAT 59.766 33.333 0.00 0.00 29.89 2.90
5103 5294 6.550854 ACCCATTTCTCAAAAACAGAATCAGA 59.449 34.615 0.00 0.00 29.89 3.27
5104 5295 6.643770 CACCCATTTCTCAAAAACAGAATCAG 59.356 38.462 0.00 0.00 29.89 2.90
5105 5296 6.323482 TCACCCATTTCTCAAAAACAGAATCA 59.677 34.615 0.00 0.00 29.89 2.57
5106 5297 6.748132 TCACCCATTTCTCAAAAACAGAATC 58.252 36.000 0.00 0.00 29.89 2.52
5107 5298 6.729690 TCACCCATTTCTCAAAAACAGAAT 57.270 33.333 0.00 0.00 29.89 2.40
5108 5299 6.537453 TTCACCCATTTCTCAAAAACAGAA 57.463 33.333 0.00 0.00 0.00 3.02
5109 5300 6.550854 AGATTCACCCATTTCTCAAAAACAGA 59.449 34.615 0.00 0.00 0.00 3.41
5110 5301 6.643770 CAGATTCACCCATTTCTCAAAAACAG 59.356 38.462 0.00 0.00 0.00 3.16
5111 5302 6.323482 TCAGATTCACCCATTTCTCAAAAACA 59.677 34.615 0.00 0.00 0.00 2.83
5112 5303 6.642540 GTCAGATTCACCCATTTCTCAAAAAC 59.357 38.462 0.00 0.00 0.00 2.43
5113 5304 6.239289 GGTCAGATTCACCCATTTCTCAAAAA 60.239 38.462 0.00 0.00 0.00 1.94
5114 5305 5.243730 GGTCAGATTCACCCATTTCTCAAAA 59.756 40.000 0.00 0.00 0.00 2.44
5115 5306 4.766891 GGTCAGATTCACCCATTTCTCAAA 59.233 41.667 0.00 0.00 0.00 2.69
5116 5307 4.202556 TGGTCAGATTCACCCATTTCTCAA 60.203 41.667 0.00 0.00 32.24 3.02
5117 5308 3.330405 TGGTCAGATTCACCCATTTCTCA 59.670 43.478 0.00 0.00 32.24 3.27
5118 5309 3.955471 TGGTCAGATTCACCCATTTCTC 58.045 45.455 0.00 0.00 32.24 2.87
5119 5310 4.387026 TTGGTCAGATTCACCCATTTCT 57.613 40.909 0.00 0.00 32.24 2.52
5120 5311 5.665916 ATTTGGTCAGATTCACCCATTTC 57.334 39.130 0.00 0.00 32.24 2.17
5121 5312 9.438163 AATATATTTGGTCAGATTCACCCATTT 57.562 29.630 0.00 0.00 32.24 2.32
5122 5313 8.863086 CAATATATTTGGTCAGATTCACCCATT 58.137 33.333 0.00 0.00 32.24 3.16
5123 5314 8.006564 ACAATATATTTGGTCAGATTCACCCAT 58.993 33.333 0.00 0.00 32.24 4.00
5124 5315 7.353525 ACAATATATTTGGTCAGATTCACCCA 58.646 34.615 0.00 0.00 32.24 4.51
5125 5316 7.823745 ACAATATATTTGGTCAGATTCACCC 57.176 36.000 0.00 0.00 32.24 4.61
5142 5333 9.845740 ACATGAGCCAGTGTAAAATACAATATA 57.154 29.630 0.00 0.00 40.93 0.86
5143 5334 8.752005 ACATGAGCCAGTGTAAAATACAATAT 57.248 30.769 0.00 0.00 40.93 1.28
5144 5335 8.574251 AACATGAGCCAGTGTAAAATACAATA 57.426 30.769 0.00 0.00 40.93 1.90
5145 5336 7.466746 AACATGAGCCAGTGTAAAATACAAT 57.533 32.000 0.00 0.00 40.93 2.71
5146 5337 6.892658 AACATGAGCCAGTGTAAAATACAA 57.107 33.333 0.00 0.00 40.93 2.41
5147 5338 8.458052 CAATAACATGAGCCAGTGTAAAATACA 58.542 33.333 0.00 0.00 36.08 2.29
5148 5339 7.432252 GCAATAACATGAGCCAGTGTAAAATAC 59.568 37.037 0.00 0.00 0.00 1.89
5149 5340 7.339212 AGCAATAACATGAGCCAGTGTAAAATA 59.661 33.333 0.00 0.00 0.00 1.40
5150 5341 6.153340 AGCAATAACATGAGCCAGTGTAAAAT 59.847 34.615 0.00 0.00 0.00 1.82
5151 5342 5.476599 AGCAATAACATGAGCCAGTGTAAAA 59.523 36.000 0.00 0.00 0.00 1.52
5152 5343 5.009631 AGCAATAACATGAGCCAGTGTAAA 58.990 37.500 0.00 0.00 0.00 2.01
5153 5344 4.588899 AGCAATAACATGAGCCAGTGTAA 58.411 39.130 0.00 0.00 0.00 2.41
5154 5345 4.220693 AGCAATAACATGAGCCAGTGTA 57.779 40.909 0.00 0.00 0.00 2.90
5155 5346 3.077484 AGCAATAACATGAGCCAGTGT 57.923 42.857 0.00 0.00 0.00 3.55
5156 5347 5.506815 CCATTAGCAATAACATGAGCCAGTG 60.507 44.000 0.00 0.00 0.00 3.66
5157 5348 4.581824 CCATTAGCAATAACATGAGCCAGT 59.418 41.667 0.00 0.00 0.00 4.00
5158 5349 4.558095 GCCATTAGCAATAACATGAGCCAG 60.558 45.833 0.00 0.00 42.97 4.85
5159 5350 3.318839 GCCATTAGCAATAACATGAGCCA 59.681 43.478 0.00 0.00 42.97 4.75
5160 5351 3.905784 GCCATTAGCAATAACATGAGCC 58.094 45.455 0.00 0.00 42.97 4.70
5173 5364 2.123428 CAGTGCCCCAGCCATTAGC 61.123 63.158 0.00 0.00 44.25 3.09
5174 5365 0.546122 TACAGTGCCCCAGCCATTAG 59.454 55.000 0.00 0.00 38.69 1.73
5175 5366 0.995803 TTACAGTGCCCCAGCCATTA 59.004 50.000 0.00 0.00 38.69 1.90
5176 5367 0.323725 CTTACAGTGCCCCAGCCATT 60.324 55.000 0.00 0.00 38.69 3.16
5177 5368 1.304282 CTTACAGTGCCCCAGCCAT 59.696 57.895 0.00 0.00 38.69 4.40
5178 5369 2.756400 CTTACAGTGCCCCAGCCA 59.244 61.111 0.00 0.00 38.69 4.75
5179 5370 2.044946 CCTTACAGTGCCCCAGCC 60.045 66.667 0.00 0.00 38.69 4.85
5180 5371 0.960861 GAACCTTACAGTGCCCCAGC 60.961 60.000 0.00 0.00 40.48 4.85
5181 5372 0.400213 TGAACCTTACAGTGCCCCAG 59.600 55.000 0.00 0.00 0.00 4.45
5182 5373 0.109723 GTGAACCTTACAGTGCCCCA 59.890 55.000 0.00 0.00 0.00 4.96
5183 5374 0.109723 TGTGAACCTTACAGTGCCCC 59.890 55.000 0.00 0.00 0.00 5.80
5184 5375 1.880027 CTTGTGAACCTTACAGTGCCC 59.120 52.381 0.00 0.00 0.00 5.36
5185 5376 2.846193 TCTTGTGAACCTTACAGTGCC 58.154 47.619 0.00 0.00 0.00 5.01
5186 5377 4.319177 AGATCTTGTGAACCTTACAGTGC 58.681 43.478 0.00 0.00 0.00 4.40
5187 5378 6.867662 AAAGATCTTGTGAACCTTACAGTG 57.132 37.500 9.17 0.00 0.00 3.66
5188 5379 7.227512 CAGAAAAGATCTTGTGAACCTTACAGT 59.772 37.037 9.17 0.00 35.73 3.55
5189 5380 7.227512 ACAGAAAAGATCTTGTGAACCTTACAG 59.772 37.037 9.17 0.00 35.73 2.74
5190 5381 7.054124 ACAGAAAAGATCTTGTGAACCTTACA 58.946 34.615 9.17 0.00 35.73 2.41
5191 5382 7.497925 ACAGAAAAGATCTTGTGAACCTTAC 57.502 36.000 9.17 0.00 35.73 2.34
5192 5383 9.273016 CTTACAGAAAAGATCTTGTGAACCTTA 57.727 33.333 9.17 0.00 35.73 2.69
5193 5384 7.775561 ACTTACAGAAAAGATCTTGTGAACCTT 59.224 33.333 9.17 0.00 35.73 3.50
5194 5385 7.283329 ACTTACAGAAAAGATCTTGTGAACCT 58.717 34.615 9.17 0.00 35.73 3.50
5195 5386 7.497925 ACTTACAGAAAAGATCTTGTGAACC 57.502 36.000 9.17 0.00 35.73 3.62
5217 5408 9.965824 CTCAACACAATAATCCAAGTTTTTACT 57.034 29.630 0.00 0.00 0.00 2.24
5218 5409 9.959749 TCTCAACACAATAATCCAAGTTTTTAC 57.040 29.630 0.00 0.00 0.00 2.01
5220 5411 9.883142 TTTCTCAACACAATAATCCAAGTTTTT 57.117 25.926 0.00 0.00 0.00 1.94
5222 5413 9.696917 GATTTCTCAACACAATAATCCAAGTTT 57.303 29.630 0.00 0.00 0.00 2.66
5223 5414 8.023128 CGATTTCTCAACACAATAATCCAAGTT 58.977 33.333 0.00 0.00 0.00 2.66
5224 5415 7.174946 ACGATTTCTCAACACAATAATCCAAGT 59.825 33.333 0.00 0.00 0.00 3.16
5225 5416 7.530010 ACGATTTCTCAACACAATAATCCAAG 58.470 34.615 0.00 0.00 0.00 3.61
5226 5417 7.447374 ACGATTTCTCAACACAATAATCCAA 57.553 32.000 0.00 0.00 0.00 3.53
5227 5418 6.183360 CGACGATTTCTCAACACAATAATCCA 60.183 38.462 0.00 0.00 0.00 3.41
5228 5419 6.185399 CGACGATTTCTCAACACAATAATCC 58.815 40.000 0.00 0.00 0.00 3.01
5229 5420 5.672856 GCGACGATTTCTCAACACAATAATC 59.327 40.000 0.00 0.00 0.00 1.75
5230 5421 5.121611 TGCGACGATTTCTCAACACAATAAT 59.878 36.000 0.00 0.00 0.00 1.28
5231 5422 4.449405 TGCGACGATTTCTCAACACAATAA 59.551 37.500 0.00 0.00 0.00 1.40
5232 5423 3.991121 TGCGACGATTTCTCAACACAATA 59.009 39.130 0.00 0.00 0.00 1.90
5233 5424 2.805671 TGCGACGATTTCTCAACACAAT 59.194 40.909 0.00 0.00 0.00 2.71
5234 5425 2.205911 TGCGACGATTTCTCAACACAA 58.794 42.857 0.00 0.00 0.00 3.33
5235 5426 1.859383 TGCGACGATTTCTCAACACA 58.141 45.000 0.00 0.00 0.00 3.72
5236 5427 2.222819 GGATGCGACGATTTCTCAACAC 60.223 50.000 0.00 0.00 0.00 3.32
5237 5428 1.999735 GGATGCGACGATTTCTCAACA 59.000 47.619 0.00 0.00 0.00 3.33
5238 5429 1.327764 GGGATGCGACGATTTCTCAAC 59.672 52.381 0.00 0.00 0.00 3.18
5239 5430 1.651987 GGGATGCGACGATTTCTCAA 58.348 50.000 0.00 0.00 0.00 3.02
5240 5431 0.527600 CGGGATGCGACGATTTCTCA 60.528 55.000 0.00 0.00 0.00 3.27
5241 5432 0.248907 TCGGGATGCGACGATTTCTC 60.249 55.000 0.00 0.00 33.69 2.87
5242 5433 0.174845 TTCGGGATGCGACGATTTCT 59.825 50.000 0.00 0.00 39.06 2.52
5243 5434 0.577269 CTTCGGGATGCGACGATTTC 59.423 55.000 0.00 0.00 39.06 2.17
5244 5435 0.108329 ACTTCGGGATGCGACGATTT 60.108 50.000 0.00 0.00 39.06 2.17
5245 5436 0.806102 CACTTCGGGATGCGACGATT 60.806 55.000 0.00 0.00 39.06 3.34
5246 5437 1.226974 CACTTCGGGATGCGACGAT 60.227 57.895 0.00 0.00 39.06 3.73
5247 5438 1.868987 TTCACTTCGGGATGCGACGA 61.869 55.000 0.00 0.00 37.33 4.20
5248 5439 1.413767 CTTCACTTCGGGATGCGACG 61.414 60.000 0.00 0.00 0.00 5.12
5249 5440 0.108804 TCTTCACTTCGGGATGCGAC 60.109 55.000 0.00 0.00 0.00 5.19
5250 5441 0.173481 CTCTTCACTTCGGGATGCGA 59.827 55.000 0.00 0.00 0.00 5.10
5251 5442 0.173481 TCTCTTCACTTCGGGATGCG 59.827 55.000 0.00 0.00 0.00 4.73
5252 5443 2.386661 TTCTCTTCACTTCGGGATGC 57.613 50.000 0.00 0.00 0.00 3.91
5253 5444 4.377431 CGTTTTTCTCTTCACTTCGGGATG 60.377 45.833 0.00 0.00 0.00 3.51
5254 5445 3.746492 CGTTTTTCTCTTCACTTCGGGAT 59.254 43.478 0.00 0.00 0.00 3.85
5255 5446 3.128349 CGTTTTTCTCTTCACTTCGGGA 58.872 45.455 0.00 0.00 0.00 5.14
5256 5447 3.128349 TCGTTTTTCTCTTCACTTCGGG 58.872 45.455 0.00 0.00 0.00 5.14
5257 5448 4.992381 ATCGTTTTTCTCTTCACTTCGG 57.008 40.909 0.00 0.00 0.00 4.30
5258 5449 6.001725 CGTTATCGTTTTTCTCTTCACTTCG 58.998 40.000 0.00 0.00 0.00 3.79
5275 5466 8.496872 AAATTTTGTAAGAAACCACGTTATCG 57.503 30.769 0.00 0.00 43.34 2.92
5278 5469 9.420551 ACAAAAATTTTGTAAGAAACCACGTTA 57.579 25.926 21.03 0.00 0.00 3.18
5279 5470 8.224437 CACAAAAATTTTGTAAGAAACCACGTT 58.776 29.630 21.78 0.00 0.00 3.99
5280 5471 7.622464 GCACAAAAATTTTGTAAGAAACCACGT 60.622 33.333 21.78 0.00 0.00 4.49
5281 5472 6.680758 GCACAAAAATTTTGTAAGAAACCACG 59.319 34.615 21.78 8.41 0.00 4.94
5282 5473 6.680758 CGCACAAAAATTTTGTAAGAAACCAC 59.319 34.615 21.78 4.84 0.00 4.16
5283 5474 6.183360 CCGCACAAAAATTTTGTAAGAAACCA 60.183 34.615 21.78 0.00 0.00 3.67
5284 5475 6.036191 TCCGCACAAAAATTTTGTAAGAAACC 59.964 34.615 21.78 5.95 0.00 3.27
5285 5476 6.897663 GTCCGCACAAAAATTTTGTAAGAAAC 59.102 34.615 21.78 15.11 0.00 2.78
5286 5477 6.036191 GGTCCGCACAAAAATTTTGTAAGAAA 59.964 34.615 21.78 9.13 0.00 2.52
5287 5478 5.520649 GGTCCGCACAAAAATTTTGTAAGAA 59.479 36.000 21.78 7.57 0.00 2.52
5288 5479 5.044558 GGTCCGCACAAAAATTTTGTAAGA 58.955 37.500 21.78 15.67 0.00 2.10
5289 5480 4.085312 CGGTCCGCACAAAAATTTTGTAAG 60.085 41.667 21.78 17.52 0.00 2.34
5290 5481 3.797256 CGGTCCGCACAAAAATTTTGTAA 59.203 39.130 21.78 7.26 0.00 2.41
5291 5482 3.181489 ACGGTCCGCACAAAAATTTTGTA 60.181 39.130 21.78 5.81 0.00 2.41
5292 5483 2.197577 CGGTCCGCACAAAAATTTTGT 58.802 42.857 17.39 17.39 0.00 2.83
5293 5484 2.197577 ACGGTCCGCACAAAAATTTTG 58.802 42.857 16.06 16.06 0.00 2.44
5294 5485 2.588027 ACGGTCCGCACAAAAATTTT 57.412 40.000 12.28 0.00 0.00 1.82
5295 5486 2.619646 ACTACGGTCCGCACAAAAATTT 59.380 40.909 12.28 0.00 0.00 1.82
5296 5487 2.223745 ACTACGGTCCGCACAAAAATT 58.776 42.857 12.28 0.00 0.00 1.82
5297 5488 1.886886 ACTACGGTCCGCACAAAAAT 58.113 45.000 12.28 0.00 0.00 1.82
5298 5489 1.666054 AACTACGGTCCGCACAAAAA 58.334 45.000 12.28 0.00 0.00 1.94
5299 5490 2.224018 ACTAACTACGGTCCGCACAAAA 60.224 45.455 12.28 0.00 0.00 2.44
5300 5491 1.340889 ACTAACTACGGTCCGCACAAA 59.659 47.619 12.28 0.00 0.00 2.83
5301 5492 0.961019 ACTAACTACGGTCCGCACAA 59.039 50.000 12.28 0.00 0.00 3.33
5302 5493 0.241749 CACTAACTACGGTCCGCACA 59.758 55.000 12.28 0.00 0.00 4.57
5303 5494 0.242017 ACACTAACTACGGTCCGCAC 59.758 55.000 12.28 0.00 0.00 5.34
5304 5495 0.961019 AACACTAACTACGGTCCGCA 59.039 50.000 12.28 0.00 0.00 5.69
5305 5496 1.200948 AGAACACTAACTACGGTCCGC 59.799 52.381 12.28 0.00 0.00 5.54
5306 5497 3.240069 CAAGAACACTAACTACGGTCCG 58.760 50.000 10.48 10.48 0.00 4.79
5307 5498 2.991866 GCAAGAACACTAACTACGGTCC 59.008 50.000 0.00 0.00 0.00 4.46
5308 5499 2.991866 GGCAAGAACACTAACTACGGTC 59.008 50.000 0.00 0.00 0.00 4.79
5309 5500 2.366266 TGGCAAGAACACTAACTACGGT 59.634 45.455 0.00 0.00 0.00 4.83
5310 5501 3.034721 TGGCAAGAACACTAACTACGG 57.965 47.619 0.00 0.00 0.00 4.02
5311 5502 5.412526 TTTTGGCAAGAACACTAACTACG 57.587 39.130 0.00 0.00 0.00 3.51
5312 5503 5.758924 CCTTTTGGCAAGAACACTAACTAC 58.241 41.667 0.00 0.00 0.00 2.73
5314 5505 4.918810 CCTTTTGGCAAGAACACTAACT 57.081 40.909 0.00 0.00 0.00 2.24
5328 5519 3.817709 TCTTTCAGGTTTGCCTTTTGG 57.182 42.857 0.00 0.00 44.18 3.28
5329 5520 4.332543 GGTTTCTTTCAGGTTTGCCTTTTG 59.667 41.667 0.00 0.00 44.18 2.44
5330 5521 4.019771 TGGTTTCTTTCAGGTTTGCCTTTT 60.020 37.500 0.00 0.00 44.18 2.27
5331 5522 3.517500 TGGTTTCTTTCAGGTTTGCCTTT 59.482 39.130 0.00 0.00 44.18 3.11
5332 5523 3.103742 TGGTTTCTTTCAGGTTTGCCTT 58.896 40.909 0.00 0.00 44.18 4.35
5334 5525 3.181466 ACATGGTTTCTTTCAGGTTTGCC 60.181 43.478 0.00 0.00 0.00 4.52
5335 5526 4.051237 GACATGGTTTCTTTCAGGTTTGC 58.949 43.478 0.00 0.00 0.00 3.68
5336 5527 5.261209 TGACATGGTTTCTTTCAGGTTTG 57.739 39.130 0.00 0.00 0.00 2.93
5337 5528 5.930837 TTGACATGGTTTCTTTCAGGTTT 57.069 34.783 0.00 0.00 0.00 3.27
5338 5529 5.835280 AGATTGACATGGTTTCTTTCAGGTT 59.165 36.000 0.00 0.00 0.00 3.50
5339 5530 5.388654 AGATTGACATGGTTTCTTTCAGGT 58.611 37.500 0.00 0.00 0.00 4.00
5340 5531 5.972107 AGATTGACATGGTTTCTTTCAGG 57.028 39.130 0.00 0.00 0.00 3.86
5341 5532 8.272545 TCATAGATTGACATGGTTTCTTTCAG 57.727 34.615 0.00 0.00 0.00 3.02
5342 5533 8.812513 ATCATAGATTGACATGGTTTCTTTCA 57.187 30.769 0.00 0.00 37.11 2.69
5343 5534 9.512435 CAATCATAGATTGACATGGTTTCTTTC 57.488 33.333 13.07 0.00 37.11 2.62
5344 5535 9.028284 ACAATCATAGATTGACATGGTTTCTTT 57.972 29.630 22.42 0.00 37.11 2.52
5345 5536 8.585471 ACAATCATAGATTGACATGGTTTCTT 57.415 30.769 22.42 0.00 37.11 2.52
5346 5537 8.585471 AACAATCATAGATTGACATGGTTTCT 57.415 30.769 22.42 0.00 37.11 2.52
5349 5540 9.857656 AGATAACAATCATAGATTGACATGGTT 57.142 29.630 22.42 10.21 37.11 3.67
5419 5612 8.250143 TCTGTTGACTCTAATGCTGGAATATA 57.750 34.615 0.00 0.00 0.00 0.86
5421 5614 6.544928 TCTGTTGACTCTAATGCTGGAATA 57.455 37.500 0.00 0.00 0.00 1.75
5445 5639 6.132658 GGTAGAGGATATAGGAGATGATGCA 58.867 44.000 0.00 0.00 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.