Multiple sequence alignment - TraesCS5D01G508900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G508900 chr5D 100.000 4507 0 0 820 5326 533999382 534003888 0.000000e+00 8323
1 TraesCS5D01G508900 chr5D 100.000 406 0 0 1 406 533998563 533998968 0.000000e+00 750
2 TraesCS5D01G508900 chr4A 91.877 4358 194 58 862 5116 637934945 637930645 0.000000e+00 5939
3 TraesCS5D01G508900 chr4A 91.195 477 27 5 4041 4511 703790345 703790812 7.530000e-178 634
4 TraesCS5D01G508900 chr4A 91.195 477 27 5 4041 4511 727041979 727042446 7.530000e-178 634
5 TraesCS5D01G508900 chr4A 91.045 469 27 6 4049 4511 10027288 10026829 2.110000e-173 619
6 TraesCS5D01G508900 chr5B 93.452 3940 182 27 820 4734 674262494 674266382 0.000000e+00 5777
7 TraesCS5D01G508900 chr5B 86.513 304 13 12 4867 5167 674266630 674266908 5.180000e-80 309
8 TraesCS5D01G508900 chr6A 91.405 477 26 5 4041 4511 571221446 571220979 1.620000e-179 640
9 TraesCS5D01G508900 chr1B 90.985 477 28 7 4041 4511 562248914 562249381 3.500000e-176 628
10 TraesCS5D01G508900 chr7B 90.356 477 31 7 4041 4511 660138333 660138800 3.530000e-171 612
11 TraesCS5D01G508900 chr1A 90.147 477 27 9 4041 4511 417203425 417202963 2.120000e-168 603


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G508900 chr5D 533998563 534003888 5325 False 4536.5 8323 100.0000 1 5326 2 chr5D.!!$F1 5325
1 TraesCS5D01G508900 chr4A 637930645 637934945 4300 True 5939.0 5939 91.8770 862 5116 1 chr4A.!!$R2 4254
2 TraesCS5D01G508900 chr5B 674262494 674266908 4414 False 3043.0 5777 89.9825 820 5167 2 chr5B.!!$F1 4347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.036765 TCTCCGATTTTGACACCCCG 60.037 55.000 0.00 0.00 0.00 5.73 F
355 356 0.233332 GAAGCGGCATCATAACTCGC 59.767 55.000 1.45 0.00 45.72 5.03 F
358 359 0.316196 GCGGCATCATAACTCGCAAC 60.316 55.000 0.00 0.00 44.87 4.17 F
359 360 1.006086 CGGCATCATAACTCGCAACA 58.994 50.000 0.00 0.00 0.00 3.33 F
402 403 1.016130 GCATCATACCGAGGCCATCG 61.016 60.000 5.01 11.65 45.76 3.84 F
1345 1367 1.878953 GGTGTGTTCTGTTCACCGAT 58.121 50.000 0.00 0.00 41.37 4.18 F
1871 1898 2.492881 TGTGCCAATTGCCATCTACAAG 59.507 45.455 0.00 0.00 40.16 3.16 F
3631 3718 1.022982 AGCATGACGCCATCACAGTG 61.023 55.000 0.00 0.00 41.24 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1917 1944 1.200716 CCATTTGCGCAGACAGAACAT 59.799 47.619 11.31 0.0 0.00 2.71 R
1987 2015 6.647212 TCGTAGAACAGAAGCAATATGTTG 57.353 37.500 7.18 0.0 43.25 3.33 R
2281 2310 6.993308 GGGAGAATTTCCTAGAAGTCATAACC 59.007 42.308 0.00 0.0 45.98 2.85 R
2604 2635 9.018582 AGAATTTTCCTTTAAACATCTCTGGAG 57.981 33.333 0.00 0.0 0.00 3.86 R
2675 2734 9.289782 AGAAACTTCTGAAATTACACAAGCTAT 57.710 29.630 0.00 0.0 35.89 2.97 R
3058 3117 1.595489 GCAGATACAAAAGCATCGCCG 60.595 52.381 0.00 0.0 0.00 6.46 R
3655 3742 2.993264 GCATGGGCCAGCACAGTT 60.993 61.111 13.78 0.0 30.39 3.16 R
5291 5574 0.179129 CATCGTGCAAATCCTTGGGC 60.179 55.000 0.00 0.0 32.76 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.953466 TTCCTACCGACTTCAATCCG 57.047 50.000 0.00 0.00 0.00 4.18
27 28 1.843368 TCCTACCGACTTCAATCCGT 58.157 50.000 0.00 0.00 0.00 4.69
28 29 3.003394 TCCTACCGACTTCAATCCGTA 57.997 47.619 0.00 0.00 0.00 4.02
29 30 2.947652 TCCTACCGACTTCAATCCGTAG 59.052 50.000 0.00 0.00 33.04 3.51
30 31 2.686915 CCTACCGACTTCAATCCGTAGT 59.313 50.000 0.00 0.00 32.00 2.73
31 32 3.879295 CCTACCGACTTCAATCCGTAGTA 59.121 47.826 0.00 0.00 32.00 1.82
32 33 4.024218 CCTACCGACTTCAATCCGTAGTAG 60.024 50.000 0.00 0.00 32.00 2.57
33 34 3.614092 ACCGACTTCAATCCGTAGTAGA 58.386 45.455 0.00 0.00 0.00 2.59
34 35 4.205587 ACCGACTTCAATCCGTAGTAGAT 58.794 43.478 0.00 0.00 0.00 1.98
35 36 5.371526 ACCGACTTCAATCCGTAGTAGATA 58.628 41.667 0.00 0.00 0.00 1.98
36 37 5.238214 ACCGACTTCAATCCGTAGTAGATAC 59.762 44.000 0.00 0.00 0.00 2.24
37 38 5.334724 CCGACTTCAATCCGTAGTAGATACC 60.335 48.000 0.00 0.00 0.00 2.73
38 39 5.237996 CGACTTCAATCCGTAGTAGATACCA 59.762 44.000 0.00 0.00 0.00 3.25
39 40 6.388435 ACTTCAATCCGTAGTAGATACCAC 57.612 41.667 0.00 0.00 0.00 4.16
40 41 5.301298 ACTTCAATCCGTAGTAGATACCACC 59.699 44.000 0.00 0.00 0.00 4.61
41 42 5.057843 TCAATCCGTAGTAGATACCACCT 57.942 43.478 0.00 0.00 0.00 4.00
42 43 6.191657 TCAATCCGTAGTAGATACCACCTA 57.808 41.667 0.00 0.00 0.00 3.08
43 44 6.604171 TCAATCCGTAGTAGATACCACCTAA 58.396 40.000 0.00 0.00 0.00 2.69
44 45 6.488006 TCAATCCGTAGTAGATACCACCTAAC 59.512 42.308 0.00 0.00 0.00 2.34
45 46 5.636903 TCCGTAGTAGATACCACCTAACT 57.363 43.478 0.00 0.00 0.00 2.24
46 47 6.747414 TCCGTAGTAGATACCACCTAACTA 57.253 41.667 0.00 0.00 0.00 2.24
47 48 7.321717 TCCGTAGTAGATACCACCTAACTAT 57.678 40.000 0.00 0.00 0.00 2.12
48 49 7.164122 TCCGTAGTAGATACCACCTAACTATG 58.836 42.308 0.00 0.00 0.00 2.23
49 50 6.128063 CCGTAGTAGATACCACCTAACTATGC 60.128 46.154 0.00 0.00 0.00 3.14
50 51 6.128063 CGTAGTAGATACCACCTAACTATGCC 60.128 46.154 0.00 0.00 0.00 4.40
51 52 5.085219 AGTAGATACCACCTAACTATGCCC 58.915 45.833 0.00 0.00 0.00 5.36
52 53 3.936461 AGATACCACCTAACTATGCCCA 58.064 45.455 0.00 0.00 0.00 5.36
53 54 4.303794 AGATACCACCTAACTATGCCCAA 58.696 43.478 0.00 0.00 0.00 4.12
54 55 4.348168 AGATACCACCTAACTATGCCCAAG 59.652 45.833 0.00 0.00 0.00 3.61
55 56 1.064685 ACCACCTAACTATGCCCAAGC 60.065 52.381 0.00 0.00 40.48 4.01
56 57 1.299541 CACCTAACTATGCCCAAGCG 58.700 55.000 0.00 0.00 44.31 4.68
57 58 1.134521 CACCTAACTATGCCCAAGCGA 60.135 52.381 0.00 0.00 44.31 4.93
58 59 1.134491 ACCTAACTATGCCCAAGCGAC 60.134 52.381 0.00 0.00 44.31 5.19
59 60 1.134521 CCTAACTATGCCCAAGCGACA 60.135 52.381 0.00 0.00 44.31 4.35
60 61 1.933853 CTAACTATGCCCAAGCGACAC 59.066 52.381 0.00 0.00 44.31 3.67
61 62 1.019278 AACTATGCCCAAGCGACACG 61.019 55.000 0.00 0.00 44.31 4.49
62 63 1.447838 CTATGCCCAAGCGACACGT 60.448 57.895 0.00 0.00 44.31 4.49
63 64 0.179121 CTATGCCCAAGCGACACGTA 60.179 55.000 0.00 0.00 44.31 3.57
64 65 0.458889 TATGCCCAAGCGACACGTAC 60.459 55.000 0.00 0.00 44.31 3.67
65 66 3.116531 GCCCAAGCGACACGTACC 61.117 66.667 0.00 0.00 0.00 3.34
66 67 2.433664 CCCAAGCGACACGTACCC 60.434 66.667 0.00 0.00 0.00 3.69
67 68 2.433664 CCAAGCGACACGTACCCC 60.434 66.667 0.00 0.00 0.00 4.95
68 69 2.807895 CAAGCGACACGTACCCCG 60.808 66.667 0.00 0.00 44.03 5.73
69 70 4.729856 AAGCGACACGTACCCCGC 62.730 66.667 12.85 12.85 47.00 6.13
71 72 4.729856 GCGACACGTACCCCGCTT 62.730 66.667 13.28 0.00 43.75 4.68
72 73 2.505557 CGACACGTACCCCGCTTC 60.506 66.667 0.00 0.00 41.42 3.86
73 74 2.125793 GACACGTACCCCGCTTCC 60.126 66.667 0.00 0.00 41.42 3.46
74 75 3.654173 GACACGTACCCCGCTTCCC 62.654 68.421 0.00 0.00 41.42 3.97
75 76 3.387947 CACGTACCCCGCTTCCCT 61.388 66.667 0.00 0.00 41.42 4.20
76 77 3.073101 ACGTACCCCGCTTCCCTC 61.073 66.667 0.00 0.00 41.42 4.30
77 78 4.203076 CGTACCCCGCTTCCCTCG 62.203 72.222 0.00 0.00 0.00 4.63
78 79 3.846430 GTACCCCGCTTCCCTCGG 61.846 72.222 0.00 0.00 46.05 4.63
97 98 2.508439 CGCAACCCTATCGCACGT 60.508 61.111 0.00 0.00 0.00 4.49
98 99 2.798501 CGCAACCCTATCGCACGTG 61.799 63.158 12.28 12.28 0.00 4.49
99 100 1.447140 GCAACCCTATCGCACGTGA 60.447 57.895 22.23 0.00 0.00 4.35
100 101 1.017177 GCAACCCTATCGCACGTGAA 61.017 55.000 22.23 6.64 0.00 3.18
101 102 1.651987 CAACCCTATCGCACGTGAAT 58.348 50.000 22.23 14.14 0.00 2.57
102 103 1.593006 CAACCCTATCGCACGTGAATC 59.407 52.381 22.23 0.00 0.00 2.52
103 104 0.248907 ACCCTATCGCACGTGAATCG 60.249 55.000 22.23 13.92 46.00 3.34
104 105 0.939577 CCCTATCGCACGTGAATCGG 60.940 60.000 22.23 15.96 44.69 4.18
105 106 0.248907 CCTATCGCACGTGAATCGGT 60.249 55.000 22.23 12.53 44.69 4.69
106 107 1.556564 CTATCGCACGTGAATCGGTT 58.443 50.000 22.23 7.57 44.69 4.44
107 108 1.924524 CTATCGCACGTGAATCGGTTT 59.075 47.619 22.23 5.21 44.69 3.27
108 109 1.999048 ATCGCACGTGAATCGGTTTA 58.001 45.000 22.23 0.00 44.69 2.01
109 110 1.780806 TCGCACGTGAATCGGTTTAA 58.219 45.000 22.23 0.00 44.69 1.52
110 111 1.722464 TCGCACGTGAATCGGTTTAAG 59.278 47.619 22.23 0.00 44.69 1.85
111 112 1.201877 CGCACGTGAATCGGTTTAAGG 60.202 52.381 22.23 0.00 44.69 2.69
112 113 1.802365 GCACGTGAATCGGTTTAAGGT 59.198 47.619 22.23 0.00 44.69 3.50
113 114 2.412325 GCACGTGAATCGGTTTAAGGTG 60.412 50.000 22.23 11.41 44.69 4.00
114 115 1.802365 ACGTGAATCGGTTTAAGGTGC 59.198 47.619 0.00 0.00 44.69 5.01
115 116 1.129811 CGTGAATCGGTTTAAGGTGCC 59.870 52.381 0.00 0.00 35.71 5.01
116 117 1.471287 GTGAATCGGTTTAAGGTGCCC 59.529 52.381 0.00 0.00 0.00 5.36
117 118 0.730840 GAATCGGTTTAAGGTGCCCG 59.269 55.000 0.00 0.00 41.75 6.13
118 119 0.037160 AATCGGTTTAAGGTGCCCGT 59.963 50.000 0.00 0.00 41.17 5.28
119 120 0.675522 ATCGGTTTAAGGTGCCCGTG 60.676 55.000 0.00 0.00 41.17 4.94
120 121 2.329614 CGGTTTAAGGTGCCCGTGG 61.330 63.158 0.00 0.00 35.78 4.94
121 122 1.974875 GGTTTAAGGTGCCCGTGGG 60.975 63.158 0.00 0.00 38.57 4.61
122 123 1.228337 GTTTAAGGTGCCCGTGGGT 60.228 57.895 6.82 0.00 37.65 4.51
123 124 0.824595 GTTTAAGGTGCCCGTGGGTT 60.825 55.000 6.82 0.00 37.65 4.11
124 125 0.537828 TTTAAGGTGCCCGTGGGTTC 60.538 55.000 6.82 0.04 37.65 3.62
125 126 2.414658 TTAAGGTGCCCGTGGGTTCC 62.415 60.000 6.82 9.32 37.65 3.62
136 137 1.458486 TGGGTTCCACCATGTCACC 59.542 57.895 0.00 0.00 41.02 4.02
137 138 1.304134 GGGTTCCACCATGTCACCC 60.304 63.158 0.00 0.00 41.02 4.61
138 139 1.304134 GGTTCCACCATGTCACCCC 60.304 63.158 0.00 0.00 38.42 4.95
139 140 1.304134 GTTCCACCATGTCACCCCC 60.304 63.158 0.00 0.00 0.00 5.40
140 141 1.465188 TTCCACCATGTCACCCCCT 60.465 57.895 0.00 0.00 0.00 4.79
141 142 1.788518 TTCCACCATGTCACCCCCTG 61.789 60.000 0.00 0.00 0.00 4.45
142 143 2.230653 CCACCATGTCACCCCCTGA 61.231 63.158 0.00 0.00 0.00 3.86
143 144 1.767036 CACCATGTCACCCCCTGAA 59.233 57.895 0.00 0.00 0.00 3.02
144 145 0.322816 CACCATGTCACCCCCTGAAG 60.323 60.000 0.00 0.00 0.00 3.02
145 146 1.379044 CCATGTCACCCCCTGAAGC 60.379 63.158 0.00 0.00 0.00 3.86
146 147 1.379916 CATGTCACCCCCTGAAGCA 59.620 57.895 0.00 0.00 0.00 3.91
147 148 0.679002 CATGTCACCCCCTGAAGCAG 60.679 60.000 0.00 0.00 0.00 4.24
148 149 1.136329 ATGTCACCCCCTGAAGCAGT 61.136 55.000 0.00 0.00 0.00 4.40
149 150 0.472925 TGTCACCCCCTGAAGCAGTA 60.473 55.000 0.00 0.00 0.00 2.74
150 151 0.912486 GTCACCCCCTGAAGCAGTAT 59.088 55.000 0.00 0.00 0.00 2.12
151 152 1.134371 GTCACCCCCTGAAGCAGTATC 60.134 57.143 0.00 0.00 0.00 2.24
152 153 0.911769 CACCCCCTGAAGCAGTATCA 59.088 55.000 0.00 0.00 0.00 2.15
153 154 1.492176 CACCCCCTGAAGCAGTATCAT 59.508 52.381 0.00 0.00 0.00 2.45
154 155 2.705658 CACCCCCTGAAGCAGTATCATA 59.294 50.000 0.00 0.00 0.00 2.15
155 156 3.136443 CACCCCCTGAAGCAGTATCATAA 59.864 47.826 0.00 0.00 0.00 1.90
156 157 3.983410 ACCCCCTGAAGCAGTATCATAAT 59.017 43.478 0.00 0.00 0.00 1.28
157 158 4.416848 ACCCCCTGAAGCAGTATCATAATT 59.583 41.667 0.00 0.00 0.00 1.40
158 159 5.006386 CCCCCTGAAGCAGTATCATAATTC 58.994 45.833 0.00 0.00 0.00 2.17
159 160 4.692625 CCCCTGAAGCAGTATCATAATTCG 59.307 45.833 0.00 0.00 0.00 3.34
160 161 5.300752 CCCTGAAGCAGTATCATAATTCGT 58.699 41.667 0.00 0.00 0.00 3.85
161 162 6.455647 CCCTGAAGCAGTATCATAATTCGTA 58.544 40.000 0.00 0.00 0.00 3.43
162 163 6.587990 CCCTGAAGCAGTATCATAATTCGTAG 59.412 42.308 0.00 0.00 0.00 3.51
163 164 7.148641 CCTGAAGCAGTATCATAATTCGTAGT 58.851 38.462 0.00 0.00 0.00 2.73
164 165 8.297426 CCTGAAGCAGTATCATAATTCGTAGTA 58.703 37.037 0.00 0.00 0.00 1.82
165 166 9.119329 CTGAAGCAGTATCATAATTCGTAGTAC 57.881 37.037 0.00 0.00 0.00 2.73
166 167 8.847196 TGAAGCAGTATCATAATTCGTAGTACT 58.153 33.333 0.00 0.00 0.00 2.73
167 168 9.119329 GAAGCAGTATCATAATTCGTAGTACTG 57.881 37.037 5.39 0.00 40.08 2.74
168 169 8.167605 AGCAGTATCATAATTCGTAGTACTGT 57.832 34.615 5.39 0.00 39.58 3.55
169 170 8.291032 AGCAGTATCATAATTCGTAGTACTGTC 58.709 37.037 5.39 0.00 39.58 3.51
170 171 8.074370 GCAGTATCATAATTCGTAGTACTGTCA 58.926 37.037 5.39 0.00 39.58 3.58
171 172 9.946165 CAGTATCATAATTCGTAGTACTGTCAA 57.054 33.333 5.39 0.00 35.23 3.18
179 180 8.758633 AATTCGTAGTACTGTCAATATATGCC 57.241 34.615 5.39 0.00 0.00 4.40
180 181 6.263516 TCGTAGTACTGTCAATATATGCCC 57.736 41.667 5.39 0.00 0.00 5.36
181 182 6.008331 TCGTAGTACTGTCAATATATGCCCT 58.992 40.000 5.39 0.00 0.00 5.19
182 183 6.150641 TCGTAGTACTGTCAATATATGCCCTC 59.849 42.308 5.39 0.00 0.00 4.30
183 184 6.072119 CGTAGTACTGTCAATATATGCCCTCA 60.072 42.308 5.39 0.00 0.00 3.86
184 185 6.747414 AGTACTGTCAATATATGCCCTCAA 57.253 37.500 0.00 0.00 0.00 3.02
185 186 7.321717 AGTACTGTCAATATATGCCCTCAAT 57.678 36.000 0.00 0.00 0.00 2.57
186 187 8.435931 AGTACTGTCAATATATGCCCTCAATA 57.564 34.615 0.00 0.00 0.00 1.90
187 188 8.535335 AGTACTGTCAATATATGCCCTCAATAG 58.465 37.037 0.00 0.00 0.00 1.73
188 189 7.321717 ACTGTCAATATATGCCCTCAATAGT 57.678 36.000 0.00 0.00 0.00 2.12
189 190 7.390027 ACTGTCAATATATGCCCTCAATAGTC 58.610 38.462 0.00 0.00 0.00 2.59
190 191 7.016563 ACTGTCAATATATGCCCTCAATAGTCA 59.983 37.037 0.00 0.00 0.00 3.41
191 192 7.921304 TGTCAATATATGCCCTCAATAGTCAT 58.079 34.615 0.00 0.00 0.00 3.06
192 193 8.043113 TGTCAATATATGCCCTCAATAGTCATC 58.957 37.037 0.00 0.00 0.00 2.92
193 194 8.043113 GTCAATATATGCCCTCAATAGTCATCA 58.957 37.037 0.00 0.00 0.00 3.07
194 195 8.775151 TCAATATATGCCCTCAATAGTCATCAT 58.225 33.333 0.00 0.00 0.00 2.45
198 199 8.975663 ATATGCCCTCAATAGTCATCATATTG 57.024 34.615 0.00 0.00 40.46 1.90
199 200 6.438186 TGCCCTCAATAGTCATCATATTGA 57.562 37.500 7.84 7.84 43.78 2.57
200 201 7.024345 TGCCCTCAATAGTCATCATATTGAT 57.976 36.000 8.40 0.00 44.48 2.57
210 211 4.568229 CATCATATTGATGCCGTCGTAC 57.432 45.455 4.68 0.00 46.37 3.67
211 212 2.657184 TCATATTGATGCCGTCGTACG 58.343 47.619 9.53 9.53 42.11 3.67
212 213 2.033675 TCATATTGATGCCGTCGTACGT 59.966 45.455 16.05 0.00 40.58 3.57
213 214 2.109609 TATTGATGCCGTCGTACGTC 57.890 50.000 16.05 8.97 40.58 4.34
214 215 0.526954 ATTGATGCCGTCGTACGTCC 60.527 55.000 16.05 6.40 40.58 4.79
215 216 2.649975 GATGCCGTCGTACGTCCG 60.650 66.667 16.05 17.52 40.58 4.79
216 217 4.842091 ATGCCGTCGTACGTCCGC 62.842 66.667 16.05 16.03 40.58 5.54
219 220 4.858200 CCGTCGTACGTCCGCGAG 62.858 72.222 16.05 0.18 40.58 5.03
220 221 3.842126 CGTCGTACGTCCGCGAGA 61.842 66.667 16.05 0.00 42.00 4.04
221 222 2.021106 GTCGTACGTCCGCGAGAG 59.979 66.667 16.05 0.00 42.00 3.20
222 223 3.190849 TCGTACGTCCGCGAGAGG 61.191 66.667 16.05 11.67 42.00 3.69
223 224 3.494336 CGTACGTCCGCGAGAGGT 61.494 66.667 20.80 20.80 45.35 3.85
224 225 2.167219 CGTACGTCCGCGAGAGGTA 61.167 63.158 19.27 19.27 43.25 3.08
225 226 1.695893 CGTACGTCCGCGAGAGGTAA 61.696 60.000 22.57 10.96 44.98 2.85
226 227 0.447801 GTACGTCCGCGAGAGGTAAA 59.552 55.000 22.57 9.13 44.98 2.01
227 228 0.447801 TACGTCCGCGAGAGGTAAAC 59.552 55.000 20.25 1.49 41.62 2.01
228 229 1.515736 CGTCCGCGAGAGGTAAACC 60.516 63.158 8.23 0.00 41.33 3.27
229 230 1.515736 GTCCGCGAGAGGTAAACCG 60.516 63.158 8.23 0.00 42.08 4.44
230 231 1.675310 TCCGCGAGAGGTAAACCGA 60.675 57.895 8.23 0.00 42.08 4.69
231 232 1.515736 CCGCGAGAGGTAAACCGAC 60.516 63.158 8.23 0.00 42.08 4.79
232 233 1.210931 CGCGAGAGGTAAACCGACA 59.789 57.895 0.00 0.00 42.08 4.35
233 234 0.179145 CGCGAGAGGTAAACCGACAT 60.179 55.000 0.00 0.00 42.08 3.06
234 235 1.557651 GCGAGAGGTAAACCGACATC 58.442 55.000 0.00 0.00 42.08 3.06
235 236 1.801765 GCGAGAGGTAAACCGACATCC 60.802 57.143 0.00 0.00 42.08 3.51
236 237 1.202382 CGAGAGGTAAACCGACATCCC 60.202 57.143 0.00 0.00 42.08 3.85
237 238 1.138464 GAGAGGTAAACCGACATCCCC 59.862 57.143 0.00 0.00 42.08 4.81
238 239 0.179702 GAGGTAAACCGACATCCCCC 59.820 60.000 0.00 0.00 42.08 5.40
254 255 2.614134 CCCCCTAAGATCTCTCCGAT 57.386 55.000 0.00 0.00 34.25 4.18
255 256 2.896039 CCCCCTAAGATCTCTCCGATT 58.104 52.381 0.00 0.00 30.84 3.34
256 257 3.243724 CCCCCTAAGATCTCTCCGATTT 58.756 50.000 0.00 0.00 30.84 2.17
257 258 3.648545 CCCCCTAAGATCTCTCCGATTTT 59.351 47.826 0.00 0.00 31.96 1.82
258 259 4.503991 CCCCCTAAGATCTCTCCGATTTTG 60.504 50.000 0.00 0.00 30.04 2.44
259 260 4.345257 CCCCTAAGATCTCTCCGATTTTGA 59.655 45.833 0.00 0.00 30.04 2.69
260 261 5.293560 CCCTAAGATCTCTCCGATTTTGAC 58.706 45.833 0.00 0.00 30.04 3.18
261 262 5.163405 CCCTAAGATCTCTCCGATTTTGACA 60.163 44.000 0.00 0.00 30.04 3.58
262 263 5.751028 CCTAAGATCTCTCCGATTTTGACAC 59.249 44.000 0.00 0.00 30.04 3.67
263 264 4.130286 AGATCTCTCCGATTTTGACACC 57.870 45.455 0.00 0.00 30.84 4.16
264 265 2.762535 TCTCTCCGATTTTGACACCC 57.237 50.000 0.00 0.00 0.00 4.61
265 266 1.278127 TCTCTCCGATTTTGACACCCC 59.722 52.381 0.00 0.00 0.00 4.95
266 267 0.036765 TCTCCGATTTTGACACCCCG 60.037 55.000 0.00 0.00 0.00 5.73
267 268 1.644786 CTCCGATTTTGACACCCCGC 61.645 60.000 0.00 0.00 0.00 6.13
268 269 1.674322 CCGATTTTGACACCCCGCT 60.674 57.895 0.00 0.00 0.00 5.52
269 270 1.644786 CCGATTTTGACACCCCGCTC 61.645 60.000 0.00 0.00 0.00 5.03
270 271 1.644786 CGATTTTGACACCCCGCTCC 61.645 60.000 0.00 0.00 0.00 4.70
271 272 0.608035 GATTTTGACACCCCGCTCCA 60.608 55.000 0.00 0.00 0.00 3.86
272 273 0.893727 ATTTTGACACCCCGCTCCAC 60.894 55.000 0.00 0.00 0.00 4.02
273 274 3.818121 TTTGACACCCCGCTCCACG 62.818 63.158 0.00 0.00 43.15 4.94
291 292 2.489751 GGCGCAACCCTATTGCAC 59.510 61.111 10.83 2.02 45.14 4.57
292 293 2.100216 GCGCAACCCTATTGCACG 59.900 61.111 0.30 0.00 45.14 5.34
293 294 2.686816 GCGCAACCCTATTGCACGT 61.687 57.895 0.30 0.00 45.14 4.49
294 295 1.134487 CGCAACCCTATTGCACGTG 59.866 57.895 12.28 12.28 45.14 4.49
295 296 1.295357 CGCAACCCTATTGCACGTGA 61.295 55.000 22.23 0.00 45.14 4.35
296 297 0.447801 GCAACCCTATTGCACGTGAG 59.552 55.000 22.23 7.43 44.34 3.51
308 309 3.206090 ACGTGAGTCGGTTTAAGGC 57.794 52.632 0.00 0.00 44.19 4.35
309 310 0.665369 ACGTGAGTCGGTTTAAGGCG 60.665 55.000 0.00 0.00 44.19 5.52
310 311 1.785951 GTGAGTCGGTTTAAGGCGC 59.214 57.895 0.00 0.00 0.00 6.53
311 312 1.375013 TGAGTCGGTTTAAGGCGCC 60.375 57.895 21.89 21.89 0.00 6.53
312 313 2.046604 AGTCGGTTTAAGGCGCCC 60.047 61.111 26.15 7.01 0.00 6.13
313 314 3.493440 GTCGGTTTAAGGCGCCCG 61.493 66.667 26.15 18.86 41.75 6.13
328 329 4.715523 CCGCGGGTTCCACCATGT 62.716 66.667 20.10 0.00 41.02 3.21
329 330 3.124921 CGCGGGTTCCACCATGTC 61.125 66.667 0.00 0.00 41.02 3.06
330 331 3.124921 GCGGGTTCCACCATGTCG 61.125 66.667 0.00 0.00 41.02 4.35
331 332 3.124921 CGGGTTCCACCATGTCGC 61.125 66.667 0.00 0.00 41.02 5.19
332 333 2.750237 GGGTTCCACCATGTCGCC 60.750 66.667 0.00 0.00 41.02 5.54
333 334 2.750237 GGTTCCACCATGTCGCCC 60.750 66.667 0.00 0.00 38.42 6.13
334 335 2.750237 GTTCCACCATGTCGCCCC 60.750 66.667 0.00 0.00 0.00 5.80
335 336 4.041762 TTCCACCATGTCGCCCCC 62.042 66.667 0.00 0.00 0.00 5.40
338 339 4.402528 CACCATGTCGCCCCCGAA 62.403 66.667 0.00 0.00 46.34 4.30
339 340 4.096003 ACCATGTCGCCCCCGAAG 62.096 66.667 0.00 0.00 46.34 3.79
348 349 4.569180 CCCCCGAAGCGGCATCAT 62.569 66.667 1.45 0.00 46.86 2.45
349 350 2.425592 CCCCGAAGCGGCATCATA 59.574 61.111 1.45 0.00 46.86 2.15
350 351 1.227823 CCCCGAAGCGGCATCATAA 60.228 57.895 1.45 0.00 46.86 1.90
351 352 1.507141 CCCCGAAGCGGCATCATAAC 61.507 60.000 1.45 0.00 46.86 1.89
352 353 0.532862 CCCGAAGCGGCATCATAACT 60.533 55.000 1.45 0.00 46.86 2.24
353 354 0.861837 CCGAAGCGGCATCATAACTC 59.138 55.000 1.45 0.00 41.17 3.01
354 355 0.504384 CGAAGCGGCATCATAACTCG 59.496 55.000 1.45 0.00 0.00 4.18
355 356 0.233332 GAAGCGGCATCATAACTCGC 59.767 55.000 1.45 0.00 45.72 5.03
356 357 3.717899 GCGGCATCATAACTCGCA 58.282 55.556 0.00 0.00 44.87 5.10
357 358 2.013807 GCGGCATCATAACTCGCAA 58.986 52.632 0.00 0.00 44.87 4.85
358 359 0.316196 GCGGCATCATAACTCGCAAC 60.316 55.000 0.00 0.00 44.87 4.17
359 360 1.006086 CGGCATCATAACTCGCAACA 58.994 50.000 0.00 0.00 0.00 3.33
360 361 1.396648 CGGCATCATAACTCGCAACAA 59.603 47.619 0.00 0.00 0.00 2.83
361 362 2.785679 GGCATCATAACTCGCAACAAC 58.214 47.619 0.00 0.00 0.00 3.32
362 363 2.161410 GGCATCATAACTCGCAACAACA 59.839 45.455 0.00 0.00 0.00 3.33
363 364 3.181497 GGCATCATAACTCGCAACAACAT 60.181 43.478 0.00 0.00 0.00 2.71
364 365 4.031028 GCATCATAACTCGCAACAACATC 58.969 43.478 0.00 0.00 0.00 3.06
365 366 4.437255 GCATCATAACTCGCAACAACATCA 60.437 41.667 0.00 0.00 0.00 3.07
366 367 5.630061 CATCATAACTCGCAACAACATCAA 58.370 37.500 0.00 0.00 0.00 2.57
367 368 5.878332 TCATAACTCGCAACAACATCAAT 57.122 34.783 0.00 0.00 0.00 2.57
368 369 6.976636 TCATAACTCGCAACAACATCAATA 57.023 33.333 0.00 0.00 0.00 1.90
369 370 7.003939 TCATAACTCGCAACAACATCAATAG 57.996 36.000 0.00 0.00 0.00 1.73
370 371 6.816140 TCATAACTCGCAACAACATCAATAGA 59.184 34.615 0.00 0.00 0.00 1.98
371 372 7.495606 TCATAACTCGCAACAACATCAATAGAT 59.504 33.333 0.00 0.00 33.87 1.98
394 395 4.866508 CCTAAAGTAGGCATCATACCGA 57.133 45.455 0.00 0.00 39.48 4.69
395 396 4.810790 CCTAAAGTAGGCATCATACCGAG 58.189 47.826 0.00 0.00 39.48 4.63
396 397 3.753294 AAAGTAGGCATCATACCGAGG 57.247 47.619 0.00 0.00 0.00 4.63
401 402 2.846371 GCATCATACCGAGGCCATC 58.154 57.895 5.01 0.00 45.76 3.51
402 403 1.016130 GCATCATACCGAGGCCATCG 61.016 60.000 5.01 11.65 45.76 3.84
1234 1249 2.040278 AGATTACATATGTGGGGCGCAT 59.960 45.455 18.81 0.00 38.23 4.73
1290 1308 5.600908 TTTAGTAAGCTGCTAAAACGTGG 57.399 39.130 16.65 0.00 36.03 4.94
1304 1326 5.961395 AAAACGTGGCGACTACATAATAG 57.039 39.130 0.00 0.00 0.00 1.73
1305 1327 4.644103 AACGTGGCGACTACATAATAGT 57.356 40.909 0.00 0.00 0.00 2.12
1329 1351 5.047306 TGTGTAGATTGTTCTGGTCTAGGTG 60.047 44.000 0.00 0.00 33.17 4.00
1330 1352 5.047235 GTGTAGATTGTTCTGGTCTAGGTGT 60.047 44.000 0.00 0.00 33.17 4.16
1334 1356 3.746045 TGTTCTGGTCTAGGTGTGTTC 57.254 47.619 0.00 0.00 0.00 3.18
1345 1367 1.878953 GGTGTGTTCTGTTCACCGAT 58.121 50.000 0.00 0.00 41.37 4.18
1371 1393 3.243873 GGTCTATTCAGATGGTCGATGCA 60.244 47.826 0.00 0.00 32.09 3.96
1526 1549 3.595819 GGATGGTGAGCAGCAACC 58.404 61.111 12.17 12.17 42.86 3.77
1528 1551 3.044059 GATGGTGAGCAGCAACCGC 62.044 63.158 6.45 4.18 42.53 5.68
1579 1602 7.639039 TGCAGTTCATGTGTACTTTTCTTAAG 58.361 34.615 0.00 0.00 0.00 1.85
1580 1603 7.497579 TGCAGTTCATGTGTACTTTTCTTAAGA 59.502 33.333 0.00 0.00 0.00 2.10
1581 1604 8.342634 GCAGTTCATGTGTACTTTTCTTAAGAA 58.657 33.333 13.99 13.99 0.00 2.52
1589 1612 9.444600 TGTGTACTTTTCTTAAGAAACTTCTGT 57.555 29.630 26.47 20.41 43.01 3.41
1590 1613 9.917872 GTGTACTTTTCTTAAGAAACTTCTGTC 57.082 33.333 26.47 14.77 43.01 3.51
1591 1614 8.814235 TGTACTTTTCTTAAGAAACTTCTGTCG 58.186 33.333 26.47 11.88 43.01 4.35
1618 1641 2.949963 GCCCCCAACTGATGATTGCTAA 60.950 50.000 0.00 0.00 0.00 3.09
1630 1653 6.990798 TGATGATTGCTAAAATGTGTTTCCA 58.009 32.000 0.00 0.00 0.00 3.53
1715 1742 8.822652 TTTAAGCACTACTTTCCTAGTGTTAC 57.177 34.615 7.90 0.00 43.87 2.50
1761 1788 6.548993 AGTCTCTTTGGAGCTTTTGATTTTCT 59.451 34.615 0.00 0.00 39.31 2.52
1776 1803 3.641437 TTTTCTGCTAATTGCGCTTGT 57.359 38.095 9.73 0.00 46.63 3.16
1871 1898 2.492881 TGTGCCAATTGCCATCTACAAG 59.507 45.455 0.00 0.00 40.16 3.16
1891 1918 6.234177 ACAAGTCATTAGTTTCTCTGAAGGG 58.766 40.000 0.00 0.00 0.00 3.95
1954 1982 5.933463 GCAAATGGATTTTGATTTCCAGTCA 59.067 36.000 2.42 0.00 46.36 3.41
1989 2017 9.384764 CCACTTTTGGTTATTAAAGGAAAACAA 57.615 29.630 0.00 0.00 38.23 2.83
2397 2427 4.935702 TGATCTGTTTTGTTTGAGCTTGG 58.064 39.130 0.00 0.00 0.00 3.61
2416 2447 6.218315 AGCTTGGGGATGTTCATATATGGTAT 59.782 38.462 12.78 5.16 0.00 2.73
2461 2492 9.995003 ATTAAAATTGTGAGGAATGCACTTTAA 57.005 25.926 0.00 0.00 37.18 1.52
2604 2635 8.307921 AGATTTCCGTTTGTTTCTACTACTTC 57.692 34.615 0.00 0.00 0.00 3.01
2675 2734 4.345859 ACTTTCGTGGTGAAATCCTGTA 57.654 40.909 0.00 0.00 45.21 2.74
2708 2767 9.880064 GTGTAATTTCAGAAGTTTCTCCTTTAC 57.120 33.333 0.00 0.75 34.74 2.01
2853 2912 6.466413 CACAAGTAGACGAATAAGAGAAGTCG 59.534 42.308 0.00 0.00 39.37 4.18
2873 2932 4.863131 GTCGTGAGAATAGGTTCGAAACAT 59.137 41.667 16.95 4.16 45.01 2.71
3058 3117 4.067972 TGGTGTCTTACAAAGTGAGGAC 57.932 45.455 0.00 0.00 0.00 3.85
3162 3221 7.892609 ACAGACAAGGTAAGTTTTGTTTCTTT 58.107 30.769 0.00 0.00 37.63 2.52
3165 3224 8.244113 AGACAAGGTAAGTTTTGTTTCTTTGAG 58.756 33.333 0.00 0.00 37.63 3.02
3215 3274 9.499479 CCAGTGTATAGAATCTTATTCTGCATT 57.501 33.333 11.51 3.76 0.00 3.56
3440 3499 8.871125 AGATGTTCCTAAACTTCTGAGAGTTTA 58.129 33.333 16.75 16.75 45.38 2.01
3484 3543 3.244561 CCGTAATACCTGCCATCCTCATT 60.245 47.826 0.00 0.00 0.00 2.57
3485 3544 4.020573 CCGTAATACCTGCCATCCTCATTA 60.021 45.833 0.00 0.00 0.00 1.90
3492 3551 4.854436 ACCTGCCATCCTCATTATATCCTT 59.146 41.667 0.00 0.00 0.00 3.36
3631 3718 1.022982 AGCATGACGCCATCACAGTG 61.023 55.000 0.00 0.00 41.24 3.66
3655 3742 3.834813 TGGCCAAGTTATAACATTTGCCA 59.165 39.130 25.04 25.04 38.40 4.92
3890 3977 2.948720 GCTGAAGGACCTGGACGCT 61.949 63.158 0.00 0.00 0.00 5.07
3964 4052 2.434185 CGCGCCCTGTTTCTAGCA 60.434 61.111 0.00 0.00 0.00 3.49
3965 4053 1.815421 CGCGCCCTGTTTCTAGCAT 60.815 57.895 0.00 0.00 0.00 3.79
3971 4059 3.741075 CGCCCTGTTTCTAGCATCATACA 60.741 47.826 0.00 0.00 0.00 2.29
3979 4067 9.330063 CTGTTTCTAGCATCATACAAAATAGGA 57.670 33.333 0.00 0.00 0.00 2.94
4079 4175 0.179048 TTGCAGATAGCCATCCCACG 60.179 55.000 0.00 0.00 44.83 4.94
4381 4481 9.933723 TGAGTGTTAGTTATATGATGATGATGG 57.066 33.333 0.00 0.00 0.00 3.51
4406 4506 2.092968 TGTGTTGCCAAGTCTGAACTCT 60.093 45.455 0.00 0.00 33.48 3.24
4516 4617 4.418328 TGTATTGCGGGCGGGCTT 62.418 61.111 0.26 0.00 0.00 4.35
4553 4654 8.592998 GTCGTCTCCAATAAGTTTATAACTGTG 58.407 37.037 0.00 0.00 41.91 3.66
4584 4685 4.521639 GGTAACTTTTTGTGGGGGAGTTAG 59.478 45.833 0.00 0.00 34.53 2.34
4706 4814 9.585099 TTTCTTTGTTTTGCATATATGTGATCC 57.415 29.630 14.14 0.00 0.00 3.36
4710 4818 5.769662 TGTTTTGCATATATGTGATCCCCTC 59.230 40.000 14.14 0.00 0.00 4.30
4749 4857 0.109597 CTGGGCACGTTTGATCAAGC 60.110 55.000 11.93 11.93 0.00 4.01
4758 4870 5.036737 CACGTTTGATCAAGCAAAGAAGTT 58.963 37.500 20.41 0.00 38.33 2.66
4777 4889 7.213678 AGAAGTTATATGCTAGCCTGTTTCTC 58.786 38.462 13.29 0.41 0.00 2.87
4784 4900 5.932619 TGCTAGCCTGTTTCTCTATGTAA 57.067 39.130 13.29 0.00 0.00 2.41
4786 4902 6.516718 TGCTAGCCTGTTTCTCTATGTAATC 58.483 40.000 13.29 0.00 0.00 1.75
4811 4927 3.535561 CTCCACTTGGCTACAGGTAATG 58.464 50.000 0.00 0.00 34.86 1.90
4822 4938 6.069905 TGGCTACAGGTAATGTTCTGGATTTA 60.070 38.462 0.00 0.00 39.96 1.40
4823 4939 6.998673 GGCTACAGGTAATGTTCTGGATTTAT 59.001 38.462 0.00 0.00 39.96 1.40
4824 4940 7.502561 GGCTACAGGTAATGTTCTGGATTTATT 59.497 37.037 0.00 0.00 39.96 1.40
4825 4941 8.903820 GCTACAGGTAATGTTCTGGATTTATTT 58.096 33.333 0.00 0.00 39.96 1.40
4863 4979 3.696051 GCAGAGCATTGGGAAGTTCATAA 59.304 43.478 5.01 0.00 0.00 1.90
4910 5189 0.587768 CTGTGCATGCTGTGAAACGA 59.412 50.000 20.33 0.00 42.39 3.85
4916 5195 1.536766 CATGCTGTGAAACGATGTGGT 59.463 47.619 0.00 0.00 42.39 4.16
4951 5230 1.066303 CGCCACTTGTTTTGCCTTGTA 59.934 47.619 0.00 0.00 0.00 2.41
5020 5303 7.073265 CACTACGACCGAAAAATAACATTTGT 58.927 34.615 0.00 0.00 0.00 2.83
5027 5310 8.655651 ACCGAAAAATAACATTTGTGAACAAT 57.344 26.923 0.00 0.00 35.55 2.71
5042 5325 6.142139 TGTGAACAATAACAAATCGCTCTTG 58.858 36.000 0.00 0.00 0.00 3.02
5047 5330 5.240623 ACAATAACAAATCGCTCTTGTTCCA 59.759 36.000 11.11 0.00 43.98 3.53
5056 5339 6.757897 ATCGCTCTTGTTCCATAAATTTGA 57.242 33.333 0.00 0.00 0.00 2.69
5057 5340 6.757897 TCGCTCTTGTTCCATAAATTTGAT 57.242 33.333 0.00 0.00 0.00 2.57
5058 5341 7.156876 TCGCTCTTGTTCCATAAATTTGATT 57.843 32.000 0.00 0.00 0.00 2.57
5059 5342 7.601856 TCGCTCTTGTTCCATAAATTTGATTT 58.398 30.769 0.00 0.00 36.29 2.17
5060 5343 8.087750 TCGCTCTTGTTCCATAAATTTGATTTT 58.912 29.630 0.00 0.00 33.82 1.82
5100 5383 7.198390 CCAAAAGTGCTGTAATAATCTCATGG 58.802 38.462 0.00 0.00 0.00 3.66
5102 5385 7.944729 AAAGTGCTGTAATAATCTCATGGTT 57.055 32.000 0.00 0.00 0.00 3.67
5105 5388 9.632638 AAGTGCTGTAATAATCTCATGGTTTAT 57.367 29.630 0.00 0.00 0.00 1.40
5106 5389 9.060347 AGTGCTGTAATAATCTCATGGTTTATG 57.940 33.333 0.00 0.00 38.17 1.90
5107 5390 8.840321 GTGCTGTAATAATCTCATGGTTTATGT 58.160 33.333 0.00 0.00 38.01 2.29
5134 5417 5.066968 TGTAGCATTACTCGTTCATGTCA 57.933 39.130 0.00 0.00 0.00 3.58
5138 5421 4.997395 AGCATTACTCGTTCATGTCAAGTT 59.003 37.500 0.00 0.00 0.00 2.66
5149 5432 4.503910 TCATGTCAAGTTGGTTATCCTCG 58.496 43.478 2.34 0.00 34.23 4.63
5167 5450 5.374071 TCCTCGCAACTAGTGTGATCTATA 58.626 41.667 0.00 0.00 45.59 1.31
5168 5451 5.238868 TCCTCGCAACTAGTGTGATCTATAC 59.761 44.000 0.00 0.00 45.59 1.47
5169 5452 5.434352 TCGCAACTAGTGTGATCTATACC 57.566 43.478 0.00 0.00 41.89 2.73
5170 5453 4.277672 TCGCAACTAGTGTGATCTATACCC 59.722 45.833 0.00 0.00 41.89 3.69
5171 5454 4.558898 CGCAACTAGTGTGATCTATACCCC 60.559 50.000 0.00 0.00 40.42 4.95
5172 5455 4.344102 GCAACTAGTGTGATCTATACCCCA 59.656 45.833 0.00 0.00 0.00 4.96
5173 5456 5.012148 GCAACTAGTGTGATCTATACCCCAT 59.988 44.000 0.00 0.00 0.00 4.00
5174 5457 6.692486 CAACTAGTGTGATCTATACCCCATC 58.308 44.000 0.00 0.00 0.00 3.51
5175 5458 5.965486 ACTAGTGTGATCTATACCCCATCA 58.035 41.667 0.00 0.00 0.00 3.07
5176 5459 6.382087 ACTAGTGTGATCTATACCCCATCAA 58.618 40.000 0.00 0.00 0.00 2.57
5177 5460 6.844388 ACTAGTGTGATCTATACCCCATCAAA 59.156 38.462 0.00 0.00 0.00 2.69
5178 5461 6.575244 AGTGTGATCTATACCCCATCAAAA 57.425 37.500 0.00 0.00 0.00 2.44
5179 5462 6.969043 AGTGTGATCTATACCCCATCAAAAA 58.031 36.000 0.00 0.00 0.00 1.94
5180 5463 7.586349 AGTGTGATCTATACCCCATCAAAAAT 58.414 34.615 0.00 0.00 0.00 1.82
5181 5464 8.061304 AGTGTGATCTATACCCCATCAAAAATT 58.939 33.333 0.00 0.00 0.00 1.82
5182 5465 8.695456 GTGTGATCTATACCCCATCAAAAATTT 58.305 33.333 0.00 0.00 0.00 1.82
5183 5466 8.912988 TGTGATCTATACCCCATCAAAAATTTC 58.087 33.333 0.00 0.00 0.00 2.17
5184 5467 9.136323 GTGATCTATACCCCATCAAAAATTTCT 57.864 33.333 0.00 0.00 0.00 2.52
5218 5501 9.661954 AGGAAAAGAGTGTAATCTATCTATCCA 57.338 33.333 0.00 0.00 33.52 3.41
5224 5507 9.766754 AGAGTGTAATCTATCTATCCATGATGT 57.233 33.333 0.00 0.00 0.00 3.06
5229 5512 9.757227 GTAATCTATCTATCCATGATGTTAGGC 57.243 37.037 0.00 0.00 0.00 3.93
5230 5513 7.984859 ATCTATCTATCCATGATGTTAGGCA 57.015 36.000 0.00 0.00 0.00 4.75
5231 5514 7.797121 TCTATCTATCCATGATGTTAGGCAA 57.203 36.000 0.00 0.00 0.00 4.52
5232 5515 7.615403 TCTATCTATCCATGATGTTAGGCAAC 58.385 38.462 0.00 0.00 35.06 4.17
5246 5529 2.510768 GGCAACTAGGACTACGATGG 57.489 55.000 0.00 0.00 0.00 3.51
5247 5530 1.755380 GGCAACTAGGACTACGATGGT 59.245 52.381 0.00 0.00 0.00 3.55
5248 5531 2.223758 GGCAACTAGGACTACGATGGTC 60.224 54.545 0.00 0.00 0.00 4.02
5249 5532 2.541178 GCAACTAGGACTACGATGGTCG 60.541 54.545 0.00 0.00 46.93 4.79
5262 5545 3.666001 CGATGGTCGTGTAATTTTTCGG 58.334 45.455 0.00 0.00 34.72 4.30
5263 5546 3.484557 CGATGGTCGTGTAATTTTTCGGG 60.485 47.826 0.00 0.00 34.72 5.14
5264 5547 3.123157 TGGTCGTGTAATTTTTCGGGA 57.877 42.857 0.00 0.00 0.00 5.14
5265 5548 3.474600 TGGTCGTGTAATTTTTCGGGAA 58.525 40.909 0.00 0.00 0.00 3.97
5266 5549 3.881688 TGGTCGTGTAATTTTTCGGGAAA 59.118 39.130 0.00 0.00 0.00 3.13
5267 5550 4.519730 TGGTCGTGTAATTTTTCGGGAAAT 59.480 37.500 0.00 0.00 0.00 2.17
5268 5551 5.009811 TGGTCGTGTAATTTTTCGGGAAATT 59.990 36.000 12.17 12.17 40.99 1.82
5269 5552 5.921976 GGTCGTGTAATTTTTCGGGAAATTT 59.078 36.000 12.58 0.00 39.32 1.82
5270 5553 7.083230 GGTCGTGTAATTTTTCGGGAAATTTA 58.917 34.615 12.58 5.64 39.32 1.40
5271 5554 7.060979 GGTCGTGTAATTTTTCGGGAAATTTAC 59.939 37.037 15.04 15.04 40.77 2.01
5272 5555 7.060979 GTCGTGTAATTTTTCGGGAAATTTACC 59.939 37.037 9.67 9.67 40.24 2.85
5273 5556 7.040548 TCGTGTAATTTTTCGGGAAATTTACCT 60.041 33.333 17.56 0.00 40.24 3.08
5274 5557 7.595875 CGTGTAATTTTTCGGGAAATTTACCTT 59.404 33.333 17.56 6.27 40.24 3.50
5275 5558 9.911138 GTGTAATTTTTCGGGAAATTTACCTTA 57.089 29.630 17.56 5.30 40.24 2.69
5276 5559 9.911138 TGTAATTTTTCGGGAAATTTACCTTAC 57.089 29.630 17.56 16.25 40.24 2.34
5277 5560 9.357652 GTAATTTTTCGGGAAATTTACCTTACC 57.642 33.333 17.56 0.31 39.32 2.85
5278 5561 6.973460 TTTTTCGGGAAATTTACCTTACCA 57.027 33.333 17.56 0.00 0.00 3.25
5279 5562 7.541916 TTTTTCGGGAAATTTACCTTACCAT 57.458 32.000 17.56 0.00 0.00 3.55
5280 5563 6.518208 TTTCGGGAAATTTACCTTACCATG 57.482 37.500 17.56 0.00 0.00 3.66
5281 5564 4.528920 TCGGGAAATTTACCTTACCATGG 58.471 43.478 17.56 11.19 0.00 3.66
5282 5565 4.018233 TCGGGAAATTTACCTTACCATGGT 60.018 41.667 23.55 23.55 41.28 3.55
5283 5566 4.097286 CGGGAAATTTACCTTACCATGGTG 59.903 45.833 28.17 13.44 38.42 4.17
5284 5567 5.020795 GGGAAATTTACCTTACCATGGTGT 58.979 41.667 28.17 18.71 38.42 4.16
5285 5568 5.126545 GGGAAATTTACCTTACCATGGTGTC 59.873 44.000 28.17 1.02 38.42 3.67
5286 5569 5.712917 GGAAATTTACCTTACCATGGTGTCA 59.287 40.000 28.17 10.21 38.42 3.58
5287 5570 6.127730 GGAAATTTACCTTACCATGGTGTCAG 60.128 42.308 28.17 18.68 38.42 3.51
5288 5571 3.343941 TTACCTTACCATGGTGTCAGC 57.656 47.619 28.17 0.00 38.42 4.26
5289 5572 1.362224 ACCTTACCATGGTGTCAGCT 58.638 50.000 28.17 5.19 36.30 4.24
5290 5573 1.003580 ACCTTACCATGGTGTCAGCTG 59.996 52.381 28.17 7.63 36.30 4.24
5291 5574 1.679944 CCTTACCATGGTGTCAGCTGG 60.680 57.143 28.17 13.54 34.84 4.85
5292 5575 0.322456 TTACCATGGTGTCAGCTGGC 60.322 55.000 28.17 12.53 31.72 4.85
5293 5576 2.196997 TACCATGGTGTCAGCTGGCC 62.197 60.000 28.17 15.00 31.72 5.36
5294 5577 2.753043 CATGGTGTCAGCTGGCCC 60.753 66.667 17.28 16.72 0.00 5.80
5295 5578 3.259314 ATGGTGTCAGCTGGCCCA 61.259 61.111 24.69 24.69 0.00 5.36
5296 5579 2.844195 ATGGTGTCAGCTGGCCCAA 61.844 57.895 25.76 6.47 0.00 4.12
5297 5580 2.674380 GGTGTCAGCTGGCCCAAG 60.674 66.667 17.28 0.00 0.00 3.61
5298 5581 2.674380 GTGTCAGCTGGCCCAAGG 60.674 66.667 17.28 0.00 0.00 3.61
5299 5582 2.853542 TGTCAGCTGGCCCAAGGA 60.854 61.111 17.28 0.00 0.00 3.36
5300 5583 2.233566 TGTCAGCTGGCCCAAGGAT 61.234 57.895 17.28 0.00 0.00 3.24
5301 5584 1.000396 GTCAGCTGGCCCAAGGATT 60.000 57.895 15.13 0.00 0.00 3.01
5302 5585 0.613012 GTCAGCTGGCCCAAGGATTT 60.613 55.000 15.13 0.00 0.00 2.17
5303 5586 0.612732 TCAGCTGGCCCAAGGATTTG 60.613 55.000 15.13 0.00 0.00 2.32
5304 5587 1.986210 AGCTGGCCCAAGGATTTGC 60.986 57.895 0.00 0.00 32.79 3.68
5305 5588 2.285024 GCTGGCCCAAGGATTTGCA 61.285 57.895 0.00 0.00 32.79 4.08
5306 5589 1.593265 CTGGCCCAAGGATTTGCAC 59.407 57.895 0.00 0.00 32.79 4.57
5307 5590 2.216750 CTGGCCCAAGGATTTGCACG 62.217 60.000 0.00 0.00 32.79 5.34
5308 5591 1.976474 GGCCCAAGGATTTGCACGA 60.976 57.895 0.00 0.00 32.79 4.35
5309 5592 1.322538 GGCCCAAGGATTTGCACGAT 61.323 55.000 0.00 0.00 32.79 3.73
5310 5593 0.179129 GCCCAAGGATTTGCACGATG 60.179 55.000 0.00 0.00 32.79 3.84
5311 5594 1.462616 CCCAAGGATTTGCACGATGA 58.537 50.000 0.00 0.00 32.79 2.92
5312 5595 1.818060 CCCAAGGATTTGCACGATGAA 59.182 47.619 0.00 0.00 32.79 2.57
5313 5596 2.230992 CCCAAGGATTTGCACGATGAAA 59.769 45.455 0.00 0.00 32.79 2.69
5314 5597 3.504863 CCAAGGATTTGCACGATGAAAG 58.495 45.455 0.00 0.00 32.79 2.62
5315 5598 3.504863 CAAGGATTTGCACGATGAAAGG 58.495 45.455 0.00 0.00 0.00 3.11
5316 5599 3.071874 AGGATTTGCACGATGAAAGGA 57.928 42.857 0.00 0.00 0.00 3.36
5317 5600 3.012518 AGGATTTGCACGATGAAAGGAG 58.987 45.455 0.00 0.00 0.00 3.69
5318 5601 3.009723 GGATTTGCACGATGAAAGGAGA 58.990 45.455 0.00 0.00 0.00 3.71
5319 5602 3.440173 GGATTTGCACGATGAAAGGAGAA 59.560 43.478 0.00 0.00 0.00 2.87
5320 5603 4.437930 GGATTTGCACGATGAAAGGAGAAG 60.438 45.833 0.00 0.00 0.00 2.85
5321 5604 3.401033 TTGCACGATGAAAGGAGAAGA 57.599 42.857 0.00 0.00 0.00 2.87
5322 5605 3.401033 TGCACGATGAAAGGAGAAGAA 57.599 42.857 0.00 0.00 0.00 2.52
5323 5606 3.067106 TGCACGATGAAAGGAGAAGAAC 58.933 45.455 0.00 0.00 0.00 3.01
5324 5607 3.067106 GCACGATGAAAGGAGAAGAACA 58.933 45.455 0.00 0.00 0.00 3.18
5325 5608 3.498397 GCACGATGAAAGGAGAAGAACAA 59.502 43.478 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.998341 CGGATTGAAGTCGGTAGGAAAAA 59.002 43.478 0.00 0.00 0.00 1.94
5 6 3.007182 ACGGATTGAAGTCGGTAGGAAAA 59.993 43.478 0.00 0.00 30.96 2.29
6 7 2.564062 ACGGATTGAAGTCGGTAGGAAA 59.436 45.455 0.00 0.00 30.96 3.13
7 8 2.173519 ACGGATTGAAGTCGGTAGGAA 58.826 47.619 0.00 0.00 30.96 3.36
8 9 1.843368 ACGGATTGAAGTCGGTAGGA 58.157 50.000 0.00 0.00 30.96 2.94
9 10 3.351020 CTACGGATTGAAGTCGGTAGG 57.649 52.381 10.73 0.00 43.08 3.18
11 12 4.769688 TCTACTACGGATTGAAGTCGGTA 58.230 43.478 0.00 0.00 34.17 4.02
12 13 3.614092 TCTACTACGGATTGAAGTCGGT 58.386 45.455 0.00 0.00 36.00 4.69
13 14 4.832590 ATCTACTACGGATTGAAGTCGG 57.167 45.455 0.00 0.00 0.00 4.79
14 15 5.237996 TGGTATCTACTACGGATTGAAGTCG 59.762 44.000 0.00 0.00 0.00 4.18
15 16 6.437094 GTGGTATCTACTACGGATTGAAGTC 58.563 44.000 0.00 0.00 0.00 3.01
16 17 5.301298 GGTGGTATCTACTACGGATTGAAGT 59.699 44.000 0.00 0.00 38.40 3.01
17 18 5.535406 AGGTGGTATCTACTACGGATTGAAG 59.465 44.000 0.00 0.00 38.40 3.02
18 19 5.452255 AGGTGGTATCTACTACGGATTGAA 58.548 41.667 0.00 0.00 38.40 2.69
19 20 5.057843 AGGTGGTATCTACTACGGATTGA 57.942 43.478 0.00 0.00 38.40 2.57
20 21 6.489361 AGTTAGGTGGTATCTACTACGGATTG 59.511 42.308 0.00 0.00 38.40 2.67
21 22 6.608922 AGTTAGGTGGTATCTACTACGGATT 58.391 40.000 0.00 0.00 38.40 3.01
22 23 6.198237 AGTTAGGTGGTATCTACTACGGAT 57.802 41.667 0.00 0.00 38.40 4.18
23 24 5.636903 AGTTAGGTGGTATCTACTACGGA 57.363 43.478 0.00 0.00 38.40 4.69
24 25 6.128063 GCATAGTTAGGTGGTATCTACTACGG 60.128 46.154 0.00 0.00 38.40 4.02
25 26 6.128063 GGCATAGTTAGGTGGTATCTACTACG 60.128 46.154 0.00 0.00 38.40 3.51
26 27 6.152492 GGGCATAGTTAGGTGGTATCTACTAC 59.848 46.154 0.00 0.00 37.01 2.73
27 28 6.183361 TGGGCATAGTTAGGTGGTATCTACTA 60.183 42.308 0.00 0.00 0.00 1.82
28 29 5.085219 GGGCATAGTTAGGTGGTATCTACT 58.915 45.833 0.00 0.00 0.00 2.57
29 30 4.836736 TGGGCATAGTTAGGTGGTATCTAC 59.163 45.833 0.00 0.00 0.00 2.59
30 31 5.082633 TGGGCATAGTTAGGTGGTATCTA 57.917 43.478 0.00 0.00 0.00 1.98
31 32 3.936461 TGGGCATAGTTAGGTGGTATCT 58.064 45.455 0.00 0.00 0.00 1.98
32 33 4.642429 CTTGGGCATAGTTAGGTGGTATC 58.358 47.826 0.00 0.00 0.00 2.24
33 34 3.181443 GCTTGGGCATAGTTAGGTGGTAT 60.181 47.826 0.00 0.00 38.54 2.73
34 35 2.171870 GCTTGGGCATAGTTAGGTGGTA 59.828 50.000 0.00 0.00 38.54 3.25
35 36 1.064685 GCTTGGGCATAGTTAGGTGGT 60.065 52.381 0.00 0.00 38.54 4.16
36 37 1.680338 GCTTGGGCATAGTTAGGTGG 58.320 55.000 0.00 0.00 38.54 4.61
37 38 1.134521 TCGCTTGGGCATAGTTAGGTG 60.135 52.381 0.00 0.00 38.60 4.00
38 39 1.134491 GTCGCTTGGGCATAGTTAGGT 60.134 52.381 0.00 0.00 38.60 3.08
39 40 1.134521 TGTCGCTTGGGCATAGTTAGG 60.135 52.381 0.00 0.00 38.60 2.69
40 41 1.933853 GTGTCGCTTGGGCATAGTTAG 59.066 52.381 0.00 0.00 38.60 2.34
41 42 1.737696 CGTGTCGCTTGGGCATAGTTA 60.738 52.381 0.00 0.00 38.60 2.24
42 43 1.019278 CGTGTCGCTTGGGCATAGTT 61.019 55.000 0.00 0.00 38.60 2.24
43 44 1.447838 CGTGTCGCTTGGGCATAGT 60.448 57.895 0.00 0.00 38.60 2.12
44 45 0.179121 TACGTGTCGCTTGGGCATAG 60.179 55.000 0.00 0.00 38.60 2.23
45 46 0.458889 GTACGTGTCGCTTGGGCATA 60.459 55.000 0.00 0.00 38.60 3.14
46 47 1.740296 GTACGTGTCGCTTGGGCAT 60.740 57.895 0.00 0.00 38.60 4.40
47 48 2.356553 GTACGTGTCGCTTGGGCA 60.357 61.111 0.00 0.00 38.60 5.36
48 49 3.116531 GGTACGTGTCGCTTGGGC 61.117 66.667 0.00 0.00 0.00 5.36
49 50 2.433664 GGGTACGTGTCGCTTGGG 60.434 66.667 0.00 0.00 0.00 4.12
50 51 2.433664 GGGGTACGTGTCGCTTGG 60.434 66.667 0.00 0.00 0.00 3.61
51 52 2.807895 CGGGGTACGTGTCGCTTG 60.808 66.667 0.00 0.00 37.93 4.01
52 53 4.729856 GCGGGGTACGTGTCGCTT 62.730 66.667 15.54 0.00 46.52 4.68
54 55 4.729856 AAGCGGGGTACGTGTCGC 62.730 66.667 15.19 15.19 46.52 5.19
55 56 2.505557 GAAGCGGGGTACGTGTCG 60.506 66.667 0.00 0.00 46.52 4.35
56 57 2.125793 GGAAGCGGGGTACGTGTC 60.126 66.667 0.00 0.00 46.52 3.67
57 58 3.698820 GGGAAGCGGGGTACGTGT 61.699 66.667 0.00 0.00 46.52 4.49
58 59 3.366739 GAGGGAAGCGGGGTACGTG 62.367 68.421 0.00 0.00 46.52 4.49
59 60 3.073101 GAGGGAAGCGGGGTACGT 61.073 66.667 0.00 0.00 46.52 3.57
61 62 3.846430 CCGAGGGAAGCGGGGTAC 61.846 72.222 0.00 0.00 44.87 3.34
80 81 2.508439 ACGTGCGATAGGGTTGCG 60.508 61.111 0.00 0.00 40.35 4.85
81 82 1.017177 TTCACGTGCGATAGGGTTGC 61.017 55.000 11.67 0.00 37.76 4.17
82 83 1.593006 GATTCACGTGCGATAGGGTTG 59.407 52.381 11.67 0.00 0.00 3.77
83 84 1.801395 CGATTCACGTGCGATAGGGTT 60.801 52.381 11.67 0.00 37.22 4.11
84 85 0.248907 CGATTCACGTGCGATAGGGT 60.249 55.000 11.67 0.00 37.22 4.34
85 86 0.939577 CCGATTCACGTGCGATAGGG 60.940 60.000 11.67 8.46 40.78 3.53
86 87 0.248907 ACCGATTCACGTGCGATAGG 60.249 55.000 20.85 20.85 40.78 2.57
87 88 1.556564 AACCGATTCACGTGCGATAG 58.443 50.000 11.67 7.68 40.78 2.08
88 89 1.999048 AAACCGATTCACGTGCGATA 58.001 45.000 11.67 0.00 40.78 2.92
89 90 1.999048 TAAACCGATTCACGTGCGAT 58.001 45.000 11.67 7.34 40.78 4.58
90 91 1.722464 CTTAAACCGATTCACGTGCGA 59.278 47.619 11.67 1.81 40.78 5.10
91 92 1.201877 CCTTAAACCGATTCACGTGCG 60.202 52.381 11.67 8.97 40.78 5.34
92 93 1.802365 ACCTTAAACCGATTCACGTGC 59.198 47.619 11.67 0.00 40.78 5.34
93 94 2.412325 GCACCTTAAACCGATTCACGTG 60.412 50.000 9.94 9.94 40.78 4.49
94 95 1.802365 GCACCTTAAACCGATTCACGT 59.198 47.619 0.00 0.00 40.78 4.49
95 96 1.129811 GGCACCTTAAACCGATTCACG 59.870 52.381 0.00 0.00 42.18 4.35
96 97 2.913777 GGCACCTTAAACCGATTCAC 57.086 50.000 0.00 0.00 0.00 3.18
121 122 1.304134 GGGGGTGACATGGTGGAAC 60.304 63.158 0.00 0.00 0.00 3.62
122 123 1.465188 AGGGGGTGACATGGTGGAA 60.465 57.895 0.00 0.00 0.00 3.53
123 124 2.209809 AGGGGGTGACATGGTGGA 59.790 61.111 0.00 0.00 0.00 4.02
124 125 1.788518 TTCAGGGGGTGACATGGTGG 61.789 60.000 0.00 0.00 33.71 4.61
125 126 0.322816 CTTCAGGGGGTGACATGGTG 60.323 60.000 0.00 0.00 33.71 4.17
126 127 2.078452 CTTCAGGGGGTGACATGGT 58.922 57.895 0.00 0.00 33.71 3.55
127 128 1.379044 GCTTCAGGGGGTGACATGG 60.379 63.158 0.00 0.00 33.71 3.66
128 129 0.679002 CTGCTTCAGGGGGTGACATG 60.679 60.000 0.00 0.00 33.71 3.21
129 130 1.136329 ACTGCTTCAGGGGGTGACAT 61.136 55.000 0.00 0.00 35.51 3.06
130 131 0.472925 TACTGCTTCAGGGGGTGACA 60.473 55.000 0.00 0.00 35.51 3.58
131 132 0.912486 ATACTGCTTCAGGGGGTGAC 59.088 55.000 0.00 0.00 35.51 3.67
132 133 1.204146 GATACTGCTTCAGGGGGTGA 58.796 55.000 0.00 0.00 35.51 4.02
133 134 0.911769 TGATACTGCTTCAGGGGGTG 59.088 55.000 0.00 0.00 35.51 4.61
134 135 1.898863 ATGATACTGCTTCAGGGGGT 58.101 50.000 0.00 0.00 35.51 4.95
135 136 4.647564 ATTATGATACTGCTTCAGGGGG 57.352 45.455 0.00 0.00 35.51 5.40
136 137 4.692625 CGAATTATGATACTGCTTCAGGGG 59.307 45.833 0.00 0.00 35.51 4.79
137 138 5.300752 ACGAATTATGATACTGCTTCAGGG 58.699 41.667 0.00 0.00 35.51 4.45
138 139 7.148641 ACTACGAATTATGATACTGCTTCAGG 58.851 38.462 0.00 0.00 35.51 3.86
139 140 9.119329 GTACTACGAATTATGATACTGCTTCAG 57.881 37.037 0.00 0.00 37.52 3.02
140 141 8.847196 AGTACTACGAATTATGATACTGCTTCA 58.153 33.333 0.00 0.00 0.00 3.02
141 142 9.119329 CAGTACTACGAATTATGATACTGCTTC 57.881 37.037 0.00 0.00 33.74 3.86
142 143 8.630917 ACAGTACTACGAATTATGATACTGCTT 58.369 33.333 0.00 0.00 40.99 3.91
143 144 8.167605 ACAGTACTACGAATTATGATACTGCT 57.832 34.615 0.00 0.00 40.99 4.24
144 145 8.074370 TGACAGTACTACGAATTATGATACTGC 58.926 37.037 0.00 3.35 40.99 4.40
145 146 9.946165 TTGACAGTACTACGAATTATGATACTG 57.054 33.333 0.00 6.90 42.31 2.74
153 154 9.850628 GGCATATATTGACAGTACTACGAATTA 57.149 33.333 0.00 0.00 31.51 1.40
154 155 7.817962 GGGCATATATTGACAGTACTACGAATT 59.182 37.037 0.00 0.00 33.62 2.17
155 156 7.178628 AGGGCATATATTGACAGTACTACGAAT 59.821 37.037 0.00 0.00 33.62 3.34
156 157 6.492429 AGGGCATATATTGACAGTACTACGAA 59.508 38.462 0.00 0.00 33.62 3.85
157 158 6.008331 AGGGCATATATTGACAGTACTACGA 58.992 40.000 0.00 0.00 33.62 3.43
158 159 6.072119 TGAGGGCATATATTGACAGTACTACG 60.072 42.308 0.00 0.00 33.62 3.51
159 160 7.228314 TGAGGGCATATATTGACAGTACTAC 57.772 40.000 0.00 0.00 33.62 2.73
160 161 7.849322 TTGAGGGCATATATTGACAGTACTA 57.151 36.000 0.00 0.00 33.62 1.82
161 162 6.747414 TTGAGGGCATATATTGACAGTACT 57.253 37.500 0.00 0.00 33.62 2.73
162 163 8.314751 ACTATTGAGGGCATATATTGACAGTAC 58.685 37.037 0.00 0.00 33.62 2.73
163 164 8.435931 ACTATTGAGGGCATATATTGACAGTA 57.564 34.615 0.00 0.00 33.62 2.74
164 165 7.016563 TGACTATTGAGGGCATATATTGACAGT 59.983 37.037 0.00 0.00 33.62 3.55
165 166 7.389232 TGACTATTGAGGGCATATATTGACAG 58.611 38.462 0.00 0.00 33.62 3.51
166 167 7.315066 TGACTATTGAGGGCATATATTGACA 57.685 36.000 0.00 0.00 33.62 3.58
167 168 8.043113 TGATGACTATTGAGGGCATATATTGAC 58.957 37.037 0.00 0.00 0.00 3.18
168 169 8.149631 TGATGACTATTGAGGGCATATATTGA 57.850 34.615 0.00 0.00 0.00 2.57
169 170 8.975663 ATGATGACTATTGAGGGCATATATTG 57.024 34.615 0.00 0.00 0.00 1.90
173 174 8.775151 TCAATATGATGACTATTGAGGGCATAT 58.225 33.333 2.47 0.00 39.48 1.78
174 175 8.149631 TCAATATGATGACTATTGAGGGCATA 57.850 34.615 2.47 0.00 39.48 3.14
175 176 7.024345 TCAATATGATGACTATTGAGGGCAT 57.976 36.000 2.47 0.00 39.48 4.40
176 177 6.438186 TCAATATGATGACTATTGAGGGCA 57.562 37.500 2.47 0.00 39.48 5.36
188 189 5.138573 CGTACGACGGCATCAATATGATGA 61.139 45.833 21.22 0.00 45.90 2.92
189 190 3.059438 CGTACGACGGCATCAATATGATG 59.941 47.826 10.44 14.46 43.85 3.07
190 191 3.242518 CGTACGACGGCATCAATATGAT 58.757 45.455 10.44 0.00 36.25 2.45
191 192 2.657184 CGTACGACGGCATCAATATGA 58.343 47.619 10.44 0.00 38.08 2.15
204 205 2.021106 CTCTCGCGGACGTACGAC 59.979 66.667 27.46 16.49 41.18 4.34
205 206 2.557059 TACCTCTCGCGGACGTACGA 62.557 60.000 27.46 15.80 41.18 3.43
206 207 1.695893 TTACCTCTCGCGGACGTACG 61.696 60.000 17.86 17.86 41.18 3.67
207 208 0.447801 TTTACCTCTCGCGGACGTAC 59.552 55.000 6.13 0.00 41.18 3.67
208 209 0.447801 GTTTACCTCTCGCGGACGTA 59.552 55.000 6.13 4.45 41.18 3.57
209 210 1.211190 GTTTACCTCTCGCGGACGT 59.789 57.895 6.13 5.43 41.18 4.34
210 211 1.515736 GGTTTACCTCTCGCGGACG 60.516 63.158 6.13 0.00 42.01 4.79
211 212 1.515736 CGGTTTACCTCTCGCGGAC 60.516 63.158 6.13 0.00 0.00 4.79
212 213 1.675310 TCGGTTTACCTCTCGCGGA 60.675 57.895 6.13 1.01 0.00 5.54
213 214 1.515736 GTCGGTTTACCTCTCGCGG 60.516 63.158 6.13 0.00 0.00 6.46
214 215 0.179145 ATGTCGGTTTACCTCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
215 216 1.557651 GATGTCGGTTTACCTCTCGC 58.442 55.000 0.00 0.00 0.00 5.03
216 217 1.202382 GGGATGTCGGTTTACCTCTCG 60.202 57.143 0.00 0.00 0.00 4.04
217 218 1.138464 GGGGATGTCGGTTTACCTCTC 59.862 57.143 0.00 0.00 0.00 3.20
218 219 1.201424 GGGGATGTCGGTTTACCTCT 58.799 55.000 0.00 0.00 0.00 3.69
219 220 0.179702 GGGGGATGTCGGTTTACCTC 59.820 60.000 0.00 0.00 0.00 3.85
220 221 2.304069 GGGGGATGTCGGTTTACCT 58.696 57.895 0.00 0.00 0.00 3.08
221 222 4.970621 GGGGGATGTCGGTTTACC 57.029 61.111 0.00 0.00 0.00 2.85
235 236 2.614134 ATCGGAGAGATCTTAGGGGG 57.386 55.000 0.00 0.00 43.63 5.40
236 237 4.345257 TCAAAATCGGAGAGATCTTAGGGG 59.655 45.833 0.00 0.00 43.63 4.79
237 238 5.163405 TGTCAAAATCGGAGAGATCTTAGGG 60.163 44.000 0.00 0.00 43.63 3.53
238 239 5.751028 GTGTCAAAATCGGAGAGATCTTAGG 59.249 44.000 0.00 0.00 43.63 2.69
239 240 5.751028 GGTGTCAAAATCGGAGAGATCTTAG 59.249 44.000 0.00 0.00 43.63 2.18
240 241 5.395324 GGGTGTCAAAATCGGAGAGATCTTA 60.395 44.000 0.00 0.00 43.63 2.10
241 242 4.508662 GGTGTCAAAATCGGAGAGATCTT 58.491 43.478 0.00 0.00 43.63 2.40
242 243 3.118592 GGGTGTCAAAATCGGAGAGATCT 60.119 47.826 0.00 0.00 43.63 2.75
243 244 3.198872 GGGTGTCAAAATCGGAGAGATC 58.801 50.000 0.00 0.00 43.63 2.75
244 245 2.092914 GGGGTGTCAAAATCGGAGAGAT 60.093 50.000 0.00 0.00 43.63 2.75
245 246 1.278127 GGGGTGTCAAAATCGGAGAGA 59.722 52.381 0.00 0.00 43.63 3.10
246 247 1.739067 GGGGTGTCAAAATCGGAGAG 58.261 55.000 0.00 0.00 43.63 3.20
247 248 0.036765 CGGGGTGTCAAAATCGGAGA 60.037 55.000 0.00 0.00 45.75 3.71
248 249 1.644786 GCGGGGTGTCAAAATCGGAG 61.645 60.000 0.00 0.00 0.00 4.63
249 250 1.673009 GCGGGGTGTCAAAATCGGA 60.673 57.895 0.00 0.00 0.00 4.55
250 251 1.644786 GAGCGGGGTGTCAAAATCGG 61.645 60.000 0.00 0.00 0.00 4.18
251 252 1.644786 GGAGCGGGGTGTCAAAATCG 61.645 60.000 0.00 0.00 0.00 3.34
252 253 0.608035 TGGAGCGGGGTGTCAAAATC 60.608 55.000 0.00 0.00 0.00 2.17
253 254 0.893727 GTGGAGCGGGGTGTCAAAAT 60.894 55.000 0.00 0.00 0.00 1.82
254 255 1.527380 GTGGAGCGGGGTGTCAAAA 60.527 57.895 0.00 0.00 0.00 2.44
255 256 2.112297 GTGGAGCGGGGTGTCAAA 59.888 61.111 0.00 0.00 0.00 2.69
256 257 4.308458 CGTGGAGCGGGGTGTCAA 62.308 66.667 0.00 0.00 36.85 3.18
277 278 0.447801 CTCACGTGCAATAGGGTTGC 59.552 55.000 11.67 5.85 45.11 4.17
278 279 1.732259 GACTCACGTGCAATAGGGTTG 59.268 52.381 11.67 0.00 0.00 3.77
279 280 1.671850 CGACTCACGTGCAATAGGGTT 60.672 52.381 11.67 0.00 37.22 4.11
280 281 0.108804 CGACTCACGTGCAATAGGGT 60.109 55.000 11.67 0.00 37.22 4.34
281 282 0.806102 CCGACTCACGTGCAATAGGG 60.806 60.000 11.67 3.27 40.78 3.53
282 283 0.108804 ACCGACTCACGTGCAATAGG 60.109 55.000 11.67 12.42 40.78 2.57
283 284 1.710013 AACCGACTCACGTGCAATAG 58.290 50.000 11.67 5.48 40.78 1.73
284 285 2.157834 AAACCGACTCACGTGCAATA 57.842 45.000 11.67 0.00 40.78 1.90
285 286 2.157834 TAAACCGACTCACGTGCAAT 57.842 45.000 11.67 0.00 40.78 3.56
286 287 1.862201 CTTAAACCGACTCACGTGCAA 59.138 47.619 11.67 0.00 40.78 4.08
287 288 1.493772 CTTAAACCGACTCACGTGCA 58.506 50.000 11.67 0.00 40.78 4.57
288 289 0.788391 CCTTAAACCGACTCACGTGC 59.212 55.000 11.67 0.00 40.78 5.34
289 290 0.788391 GCCTTAAACCGACTCACGTG 59.212 55.000 9.94 9.94 40.78 4.49
290 291 0.665369 CGCCTTAAACCGACTCACGT 60.665 55.000 0.00 0.00 40.78 4.49
291 292 1.952266 GCGCCTTAAACCGACTCACG 61.952 60.000 0.00 0.00 42.18 4.35
292 293 1.632948 GGCGCCTTAAACCGACTCAC 61.633 60.000 22.15 0.00 0.00 3.51
293 294 1.375013 GGCGCCTTAAACCGACTCA 60.375 57.895 22.15 0.00 0.00 3.41
294 295 2.104859 GGGCGCCTTAAACCGACTC 61.105 63.158 28.56 0.00 31.92 3.36
295 296 2.046604 GGGCGCCTTAAACCGACT 60.047 61.111 28.56 0.00 31.92 4.18
317 318 2.750237 GGGGCGACATGGTGGAAC 60.750 66.667 0.00 0.00 0.00 3.62
318 319 4.041762 GGGGGCGACATGGTGGAA 62.042 66.667 0.00 0.00 0.00 3.53
321 322 4.402528 TTCGGGGGCGACATGGTG 62.403 66.667 0.00 0.00 0.00 4.17
322 323 4.096003 CTTCGGGGGCGACATGGT 62.096 66.667 0.00 0.00 0.00 3.55
335 336 0.504384 CGAGTTATGATGCCGCTTCG 59.496 55.000 2.15 0.00 0.00 3.79
336 337 0.233332 GCGAGTTATGATGCCGCTTC 59.767 55.000 0.00 0.00 42.24 3.86
337 338 0.461870 TGCGAGTTATGATGCCGCTT 60.462 50.000 0.00 0.00 45.28 4.68
338 339 0.461870 TTGCGAGTTATGATGCCGCT 60.462 50.000 0.00 0.00 45.28 5.52
339 340 0.316196 GTTGCGAGTTATGATGCCGC 60.316 55.000 0.00 0.00 45.28 6.53
340 341 1.006086 TGTTGCGAGTTATGATGCCG 58.994 50.000 0.00 0.00 0.00 5.69
341 342 2.161410 TGTTGTTGCGAGTTATGATGCC 59.839 45.455 0.00 0.00 0.00 4.40
342 343 3.469899 TGTTGTTGCGAGTTATGATGC 57.530 42.857 0.00 0.00 0.00 3.91
343 344 5.220557 TGATGTTGTTGCGAGTTATGATG 57.779 39.130 0.00 0.00 0.00 3.07
344 345 5.878332 TTGATGTTGTTGCGAGTTATGAT 57.122 34.783 0.00 0.00 0.00 2.45
345 346 5.878332 ATTGATGTTGTTGCGAGTTATGA 57.122 34.783 0.00 0.00 0.00 2.15
346 347 7.003939 TCTATTGATGTTGTTGCGAGTTATG 57.996 36.000 0.00 0.00 0.00 1.90
347 348 7.633621 CATCTATTGATGTTGTTGCGAGTTAT 58.366 34.615 8.76 0.00 43.68 1.89
348 349 7.003939 CATCTATTGATGTTGTTGCGAGTTA 57.996 36.000 8.76 0.00 43.68 2.24
349 350 5.872635 CATCTATTGATGTTGTTGCGAGTT 58.127 37.500 8.76 0.00 43.68 3.01
350 351 5.475273 CATCTATTGATGTTGTTGCGAGT 57.525 39.130 8.76 0.00 43.68 4.18
374 375 4.810790 CCTCGGTATGATGCCTACTTTAG 58.189 47.826 0.00 0.00 0.00 1.85
375 376 3.006537 GCCTCGGTATGATGCCTACTTTA 59.993 47.826 0.00 0.00 32.63 1.85
376 377 2.224305 GCCTCGGTATGATGCCTACTTT 60.224 50.000 0.00 0.00 32.63 2.66
377 378 1.344763 GCCTCGGTATGATGCCTACTT 59.655 52.381 0.00 0.00 32.63 2.24
378 379 0.969894 GCCTCGGTATGATGCCTACT 59.030 55.000 0.00 0.00 32.63 2.57
379 380 3.516578 GCCTCGGTATGATGCCTAC 57.483 57.895 0.00 0.00 32.63 3.18
383 384 1.016130 CGATGGCCTCGGTATGATGC 61.016 60.000 14.53 0.00 43.82 3.91
384 385 3.128259 CGATGGCCTCGGTATGATG 57.872 57.895 14.53 0.00 43.82 3.07
1012 1022 1.547755 AGGAGGTGGAGGAGGAGGA 60.548 63.158 0.00 0.00 0.00 3.71
1013 1023 1.075600 GAGGAGGTGGAGGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
1234 1249 2.599408 AACTAAGTCCCTCTCGACCA 57.401 50.000 0.00 0.00 32.91 4.02
1290 1308 7.861372 ACAATCTACACACTATTATGTAGTCGC 59.139 37.037 10.34 0.00 45.65 5.19
1304 1326 5.047235 ACCTAGACCAGAACAATCTACACAC 60.047 44.000 0.00 0.00 33.50 3.82
1305 1327 5.047306 CACCTAGACCAGAACAATCTACACA 60.047 44.000 0.00 0.00 33.50 3.72
1329 1351 5.007385 ACCTATATCGGTGAACAGAACAC 57.993 43.478 0.00 0.00 35.52 3.32
1330 1352 4.954202 AGACCTATATCGGTGAACAGAACA 59.046 41.667 3.15 0.00 37.42 3.18
1334 1356 7.175119 TCTGAATAGACCTATATCGGTGAACAG 59.825 40.741 3.15 6.52 37.42 3.16
1345 1367 6.095580 GCATCGACCATCTGAATAGACCTATA 59.904 42.308 0.00 0.00 35.34 1.31
1528 1551 2.165030 GGACCATGCTGGAATTGAACAG 59.835 50.000 8.91 0.00 40.96 3.16
1554 1577 7.497579 TCTTAAGAAAAGTACACATGAACTGCA 59.502 33.333 1.68 0.00 0.00 4.41
1591 1614 3.684369 ATCAGTTGGGGGCCATGGC 62.684 63.158 29.47 29.47 41.06 4.40
1618 1641 8.791327 ACAAATTTCTTCTTGGAAACACATTT 57.209 26.923 0.00 0.00 42.67 2.32
1630 1653 7.654923 GCATTCCTTCAAGACAAATTTCTTCTT 59.345 33.333 5.95 5.95 33.31 2.52
1715 1742 6.147821 AGACTAACTGTGTCAATTTCATTCGG 59.852 38.462 1.77 0.00 36.94 4.30
1761 1788 3.252215 AGTTACAACAAGCGCAATTAGCA 59.748 39.130 11.47 0.00 46.13 3.49
1871 1898 8.617290 TTTAACCCTTCAGAGAAACTAATGAC 57.383 34.615 0.00 0.00 0.00 3.06
1917 1944 1.200716 CCATTTGCGCAGACAGAACAT 59.799 47.619 11.31 0.00 0.00 2.71
1982 2010 9.118236 GTAGAACAGAAGCAATATGTTGTTTTC 57.882 33.333 5.79 8.91 43.25 2.29
1987 2015 6.647212 TCGTAGAACAGAAGCAATATGTTG 57.353 37.500 7.18 0.00 43.25 3.33
1989 2017 8.942338 TTAATCGTAGAACAGAAGCAATATGT 57.058 30.769 0.00 0.00 43.58 2.29
2281 2310 6.993308 GGGAGAATTTCCTAGAAGTCATAACC 59.007 42.308 0.00 0.00 45.98 2.85
2604 2635 9.018582 AGAATTTTCCTTTAAACATCTCTGGAG 57.981 33.333 0.00 0.00 0.00 3.86
2675 2734 9.289782 AGAAACTTCTGAAATTACACAAGCTAT 57.710 29.630 0.00 0.00 35.89 2.97
2708 2767 2.744202 GCTCAACATCTGTACAGGTTGG 59.256 50.000 29.20 23.44 40.64 3.77
2830 2889 6.466413 CACGACTTCTCTTATTCGTCTACTTG 59.534 42.308 0.00 0.00 42.60 3.16
2853 2912 9.530633 AATACTATGTTTCGAACCTATTCTCAC 57.469 33.333 0.00 0.00 32.12 3.51
2908 2967 1.866925 GCGCTAGCAAAGGTTTCGT 59.133 52.632 16.45 0.00 44.35 3.85
3058 3117 1.595489 GCAGATACAAAAGCATCGCCG 60.595 52.381 0.00 0.00 0.00 6.46
3162 3221 3.745975 CCGTAACATGCTTTGAGTTCTCA 59.254 43.478 0.00 0.00 0.00 3.27
3165 3224 3.746492 AGTCCGTAACATGCTTTGAGTTC 59.254 43.478 0.00 0.00 0.00 3.01
3215 3274 4.579869 GCAAGAACTGATACCTGGAAAGA 58.420 43.478 0.00 0.00 0.00 2.52
3250 3309 4.332268 CAGCTTCTGAATGTCTTTAGAGCC 59.668 45.833 0.00 0.00 32.44 4.70
3492 3551 8.444783 AGTGGATAATACATGGCAGGTAATAAA 58.555 33.333 16.56 2.72 0.00 1.40
3631 3718 3.865164 GCAAATGTTATAACTTGGCCAGC 59.135 43.478 16.33 0.00 0.00 4.85
3655 3742 2.993264 GCATGGGCCAGCACAGTT 60.993 61.111 13.78 0.00 30.39 3.16
3890 3977 3.306225 GGCAATGGAATGTCAAGAAGCAA 60.306 43.478 0.00 0.00 0.00 3.91
3985 4073 3.444916 CGTCTAGCGAAGGCAAGATAAA 58.555 45.455 0.98 0.00 44.77 1.40
4038 4134 6.735694 GCAAGTTGAAACCAGAGCATTTAGAA 60.736 38.462 7.16 0.00 0.00 2.10
4039 4135 5.278463 GCAAGTTGAAACCAGAGCATTTAGA 60.278 40.000 7.16 0.00 0.00 2.10
4358 4455 8.663025 CAGCCATCATCATCATATAACTAACAC 58.337 37.037 0.00 0.00 0.00 3.32
4364 4461 6.429078 ACACACAGCCATCATCATCATATAAC 59.571 38.462 0.00 0.00 0.00 1.89
4366 4463 6.117975 ACACACAGCCATCATCATCATATA 57.882 37.500 0.00 0.00 0.00 0.86
4367 4464 4.981812 ACACACAGCCATCATCATCATAT 58.018 39.130 0.00 0.00 0.00 1.78
4370 4467 2.750712 CAACACACAGCCATCATCATCA 59.249 45.455 0.00 0.00 0.00 3.07
4371 4468 2.479049 GCAACACACAGCCATCATCATC 60.479 50.000 0.00 0.00 0.00 2.92
4406 4506 2.974148 CTCAACGCACAGCCAGCA 60.974 61.111 0.00 0.00 0.00 4.41
4516 4617 2.028876 TGGAGACGACAACAAGAGTCA 58.971 47.619 0.00 0.00 35.77 3.41
4553 4654 4.037089 CCCACAAAAAGTTACCTACACCAC 59.963 45.833 0.00 0.00 0.00 4.16
4584 4685 6.516739 TGTACTTCCGATCCATCATATCTC 57.483 41.667 0.00 0.00 0.00 2.75
4680 4781 9.585099 GGATCACATATATGCAAAACAAAGAAA 57.415 29.630 12.79 0.00 0.00 2.52
4681 4782 8.196771 GGGATCACATATATGCAAAACAAAGAA 58.803 33.333 12.79 0.00 0.00 2.52
4683 4784 6.925165 GGGGATCACATATATGCAAAACAAAG 59.075 38.462 12.79 0.00 0.00 2.77
4684 4785 6.610830 AGGGGATCACATATATGCAAAACAAA 59.389 34.615 12.79 0.00 0.00 2.83
4687 4788 5.106555 CGAGGGGATCACATATATGCAAAAC 60.107 44.000 12.79 1.22 0.00 2.43
4689 4790 4.565444 CCGAGGGGATCACATATATGCAAA 60.565 45.833 12.79 0.00 34.06 3.68
4692 4793 3.185246 CCGAGGGGATCACATATATGC 57.815 52.381 12.79 0.00 34.06 3.14
4706 4814 0.684535 AAAACAAAATGGCCCGAGGG 59.315 50.000 0.00 3.22 38.57 4.30
4710 4818 1.507562 GACCAAAACAAAATGGCCCG 58.492 50.000 0.00 0.00 40.51 6.13
4749 4857 7.559590 AACAGGCTAGCATATAACTTCTTTG 57.440 36.000 18.24 0.00 0.00 2.77
4758 4870 7.782897 ACATAGAGAAACAGGCTAGCATATA 57.217 36.000 18.24 0.00 0.00 0.86
4777 4889 4.214971 GCCAAGTGGAGCATGATTACATAG 59.785 45.833 0.18 0.00 37.39 2.23
4784 4900 1.561076 TGTAGCCAAGTGGAGCATGAT 59.439 47.619 0.18 0.00 37.39 2.45
4786 4902 1.376543 CTGTAGCCAAGTGGAGCATG 58.623 55.000 0.18 0.00 37.39 4.06
4824 4940 7.213216 TGCTCTGCTAATTTTGTCATACAAA 57.787 32.000 1.21 1.21 45.37 2.83
4825 4941 6.816134 TGCTCTGCTAATTTTGTCATACAA 57.184 33.333 0.00 0.00 36.11 2.41
4910 5189 2.817839 GCCCTACCAAGTCAAACCACAT 60.818 50.000 0.00 0.00 0.00 3.21
4916 5195 1.302993 GGCGCCCTACCAAGTCAAA 60.303 57.895 18.11 0.00 0.00 2.69
5020 5303 6.312399 ACAAGAGCGATTTGTTATTGTTCA 57.688 33.333 0.00 0.00 39.76 3.18
5027 5310 7.441890 TTTATGGAACAAGAGCGATTTGTTA 57.558 32.000 13.62 3.58 45.82 2.41
5100 5383 8.013378 ACGAGTAATGCTACAAACAACATAAAC 58.987 33.333 0.00 0.00 0.00 2.01
5102 5385 7.661127 ACGAGTAATGCTACAAACAACATAA 57.339 32.000 0.00 0.00 0.00 1.90
5105 5388 5.524281 TGAACGAGTAATGCTACAAACAACA 59.476 36.000 0.00 0.00 0.00 3.33
5106 5389 5.981174 TGAACGAGTAATGCTACAAACAAC 58.019 37.500 0.00 0.00 0.00 3.32
5107 5390 6.203915 ACATGAACGAGTAATGCTACAAACAA 59.796 34.615 0.00 0.00 0.00 2.83
5113 5396 5.577164 ACTTGACATGAACGAGTAATGCTAC 59.423 40.000 0.00 0.00 31.17 3.58
5115 5398 4.569943 ACTTGACATGAACGAGTAATGCT 58.430 39.130 0.00 0.00 31.17 3.79
5116 5399 4.928661 ACTTGACATGAACGAGTAATGC 57.071 40.909 0.00 0.00 31.17 3.56
5134 5417 3.418684 AGTTGCGAGGATAACCAACTT 57.581 42.857 0.00 0.00 43.73 2.66
5138 5421 2.829720 ACACTAGTTGCGAGGATAACCA 59.170 45.455 0.00 0.00 38.94 3.67
5149 5432 4.344102 TGGGGTATAGATCACACTAGTTGC 59.656 45.833 0.00 0.00 0.00 4.17
5192 5475 9.661954 TGGATAGATAGATTACACTCTTTTCCT 57.338 33.333 0.00 0.00 0.00 3.36
5198 5481 9.766754 ACATCATGGATAGATAGATTACACTCT 57.233 33.333 0.00 0.00 0.00 3.24
5203 5486 9.757227 GCCTAACATCATGGATAGATAGATTAC 57.243 37.037 0.00 0.00 0.00 1.89
5204 5487 9.492730 TGCCTAACATCATGGATAGATAGATTA 57.507 33.333 0.00 0.00 0.00 1.75
5205 5488 8.384693 TGCCTAACATCATGGATAGATAGATT 57.615 34.615 0.00 0.00 0.00 2.40
5206 5489 7.984859 TGCCTAACATCATGGATAGATAGAT 57.015 36.000 0.00 0.00 0.00 1.98
5207 5490 7.455953 AGTTGCCTAACATCATGGATAGATAGA 59.544 37.037 0.00 0.00 39.30 1.98
5208 5491 7.619050 AGTTGCCTAACATCATGGATAGATAG 58.381 38.462 0.00 0.00 39.30 2.08
5209 5492 7.559335 AGTTGCCTAACATCATGGATAGATA 57.441 36.000 0.00 0.00 39.30 1.98
5210 5493 6.445451 AGTTGCCTAACATCATGGATAGAT 57.555 37.500 0.00 0.00 39.30 1.98
5211 5494 5.894298 AGTTGCCTAACATCATGGATAGA 57.106 39.130 0.00 0.00 39.30 1.98
5212 5495 6.014242 TCCTAGTTGCCTAACATCATGGATAG 60.014 42.308 0.00 0.00 39.30 2.08
5213 5496 5.843969 TCCTAGTTGCCTAACATCATGGATA 59.156 40.000 0.00 0.00 39.30 2.59
5214 5497 4.660303 TCCTAGTTGCCTAACATCATGGAT 59.340 41.667 0.00 0.00 39.30 3.41
5215 5498 4.037222 TCCTAGTTGCCTAACATCATGGA 58.963 43.478 0.00 0.00 39.30 3.41
5216 5499 4.130118 GTCCTAGTTGCCTAACATCATGG 58.870 47.826 0.00 0.00 39.30 3.66
5217 5500 5.028549 AGTCCTAGTTGCCTAACATCATG 57.971 43.478 0.00 0.00 39.30 3.07
5218 5501 5.221263 CGTAGTCCTAGTTGCCTAACATCAT 60.221 44.000 0.00 0.00 39.30 2.45
5219 5502 4.097437 CGTAGTCCTAGTTGCCTAACATCA 59.903 45.833 0.00 0.00 39.30 3.07
5220 5503 4.337555 TCGTAGTCCTAGTTGCCTAACATC 59.662 45.833 0.00 0.00 39.30 3.06
5221 5504 4.275810 TCGTAGTCCTAGTTGCCTAACAT 58.724 43.478 0.00 0.00 39.30 2.71
5222 5505 3.689347 TCGTAGTCCTAGTTGCCTAACA 58.311 45.455 0.00 0.00 39.30 2.41
5223 5506 4.499357 CCATCGTAGTCCTAGTTGCCTAAC 60.499 50.000 0.00 0.00 37.06 2.34
5224 5507 3.635373 CCATCGTAGTCCTAGTTGCCTAA 59.365 47.826 0.00 0.00 0.00 2.69
5225 5508 3.220110 CCATCGTAGTCCTAGTTGCCTA 58.780 50.000 0.00 0.00 0.00 3.93
5226 5509 2.032620 CCATCGTAGTCCTAGTTGCCT 58.967 52.381 0.00 0.00 0.00 4.75
5227 5510 1.755380 ACCATCGTAGTCCTAGTTGCC 59.245 52.381 0.00 0.00 0.00 4.52
5228 5511 2.541178 CGACCATCGTAGTCCTAGTTGC 60.541 54.545 0.00 0.00 34.72 4.17
5229 5512 3.335786 CGACCATCGTAGTCCTAGTTG 57.664 52.381 0.00 0.00 34.72 3.16
5241 5524 3.484557 CCCGAAAAATTACACGACCATCG 60.485 47.826 0.00 0.00 46.93 3.84
5242 5525 3.685756 TCCCGAAAAATTACACGACCATC 59.314 43.478 0.00 0.00 0.00 3.51
5243 5526 3.677190 TCCCGAAAAATTACACGACCAT 58.323 40.909 0.00 0.00 0.00 3.55
5244 5527 3.123157 TCCCGAAAAATTACACGACCA 57.877 42.857 0.00 0.00 0.00 4.02
5245 5528 4.486574 TTTCCCGAAAAATTACACGACC 57.513 40.909 0.00 0.00 0.00 4.79
5246 5529 6.996562 AAATTTCCCGAAAAATTACACGAC 57.003 33.333 7.76 0.00 37.75 4.34
5247 5530 7.040548 AGGTAAATTTCCCGAAAAATTACACGA 60.041 33.333 19.78 0.47 37.75 4.35
5248 5531 7.085746 AGGTAAATTTCCCGAAAAATTACACG 58.914 34.615 19.78 0.00 37.75 4.49
5249 5532 8.821147 AAGGTAAATTTCCCGAAAAATTACAC 57.179 30.769 19.78 12.66 37.75 2.90
5250 5533 9.911138 GTAAGGTAAATTTCCCGAAAAATTACA 57.089 29.630 19.78 7.18 37.75 2.41
5251 5534 9.357652 GGTAAGGTAAATTTCCCGAAAAATTAC 57.642 33.333 14.63 14.63 37.75 1.89
5252 5535 9.086758 TGGTAAGGTAAATTTCCCGAAAAATTA 57.913 29.630 0.00 0.00 37.75 1.40
5253 5536 7.964624 TGGTAAGGTAAATTTCCCGAAAAATT 58.035 30.769 0.00 2.91 39.83 1.82
5254 5537 7.541916 TGGTAAGGTAAATTTCCCGAAAAAT 57.458 32.000 0.00 0.00 33.56 1.82
5255 5538 6.973460 TGGTAAGGTAAATTTCCCGAAAAA 57.027 33.333 0.00 0.00 33.56 1.94
5256 5539 6.071278 CCATGGTAAGGTAAATTTCCCGAAAA 60.071 38.462 2.57 0.00 33.56 2.29
5257 5540 5.419471 CCATGGTAAGGTAAATTTCCCGAAA 59.581 40.000 2.57 0.00 34.46 3.46
5258 5541 4.951094 CCATGGTAAGGTAAATTTCCCGAA 59.049 41.667 2.57 0.00 0.00 4.30
5259 5542 4.018233 ACCATGGTAAGGTAAATTTCCCGA 60.018 41.667 18.10 0.00 37.67 5.14
5260 5543 4.097286 CACCATGGTAAGGTAAATTTCCCG 59.903 45.833 19.28 0.00 37.23 5.14
5261 5544 5.020795 ACACCATGGTAAGGTAAATTTCCC 58.979 41.667 19.28 0.00 37.23 3.97
5262 5545 5.712917 TGACACCATGGTAAGGTAAATTTCC 59.287 40.000 19.28 0.00 37.23 3.13
5263 5546 6.625081 GCTGACACCATGGTAAGGTAAATTTC 60.625 42.308 19.28 0.00 37.23 2.17
5264 5547 5.185056 GCTGACACCATGGTAAGGTAAATTT 59.815 40.000 19.28 0.00 37.23 1.82
5265 5548 4.705023 GCTGACACCATGGTAAGGTAAATT 59.295 41.667 19.28 0.00 37.23 1.82
5266 5549 4.018415 AGCTGACACCATGGTAAGGTAAAT 60.018 41.667 19.28 0.00 37.23 1.40
5267 5550 3.329520 AGCTGACACCATGGTAAGGTAAA 59.670 43.478 19.28 3.03 37.23 2.01
5268 5551 2.910319 AGCTGACACCATGGTAAGGTAA 59.090 45.455 19.28 3.71 37.23 2.85
5269 5552 2.236146 CAGCTGACACCATGGTAAGGTA 59.764 50.000 19.28 1.70 37.23 3.08
5270 5553 1.003580 CAGCTGACACCATGGTAAGGT 59.996 52.381 19.28 17.46 40.85 3.50
5271 5554 1.679944 CCAGCTGACACCATGGTAAGG 60.680 57.143 19.28 8.24 0.00 2.69
5272 5555 1.742761 CCAGCTGACACCATGGTAAG 58.257 55.000 19.28 16.18 0.00 2.34
5273 5556 0.322456 GCCAGCTGACACCATGGTAA 60.322 55.000 19.28 5.45 35.17 2.85
5274 5557 1.299648 GCCAGCTGACACCATGGTA 59.700 57.895 19.28 0.39 35.17 3.25
5275 5558 2.034687 GCCAGCTGACACCATGGT 59.965 61.111 17.39 13.00 35.17 3.55
5276 5559 2.753043 GGCCAGCTGACACCATGG 60.753 66.667 17.39 11.19 35.84 3.66
5277 5560 2.753043 GGGCCAGCTGACACCATG 60.753 66.667 17.39 0.00 0.00 3.66
5278 5561 2.776370 CTTGGGCCAGCTGACACCAT 62.776 60.000 17.39 0.00 0.00 3.55
5279 5562 3.496309 CTTGGGCCAGCTGACACCA 62.496 63.158 17.39 16.97 0.00 4.17
5280 5563 2.674380 CTTGGGCCAGCTGACACC 60.674 66.667 17.39 14.43 0.00 4.16
5281 5564 2.490270 ATCCTTGGGCCAGCTGACAC 62.490 60.000 17.39 4.88 0.00 3.67
5282 5565 1.792757 AATCCTTGGGCCAGCTGACA 61.793 55.000 17.39 8.51 0.00 3.58
5283 5566 0.613012 AAATCCTTGGGCCAGCTGAC 60.613 55.000 17.39 2.25 0.00 3.51
5284 5567 0.612732 CAAATCCTTGGGCCAGCTGA 60.613 55.000 17.39 5.18 0.00 4.26
5285 5568 1.895238 CAAATCCTTGGGCCAGCTG 59.105 57.895 6.23 6.78 0.00 4.24
5286 5569 1.986210 GCAAATCCTTGGGCCAGCT 60.986 57.895 6.23 0.00 32.76 4.24
5287 5570 2.285024 TGCAAATCCTTGGGCCAGC 61.285 57.895 6.23 5.41 32.76 4.85
5288 5571 1.593265 GTGCAAATCCTTGGGCCAG 59.407 57.895 6.23 0.66 32.76 4.85
5289 5572 2.274645 CGTGCAAATCCTTGGGCCA 61.275 57.895 0.00 0.00 32.76 5.36
5290 5573 1.322538 ATCGTGCAAATCCTTGGGCC 61.323 55.000 0.00 0.00 32.76 5.80
5291 5574 0.179129 CATCGTGCAAATCCTTGGGC 60.179 55.000 0.00 0.00 32.76 5.36
5292 5575 1.462616 TCATCGTGCAAATCCTTGGG 58.537 50.000 0.00 0.00 32.76 4.12
5293 5576 3.504863 CTTTCATCGTGCAAATCCTTGG 58.495 45.455 0.00 0.00 32.76 3.61
5294 5577 3.191162 TCCTTTCATCGTGCAAATCCTTG 59.809 43.478 0.00 0.00 35.49 3.61
5295 5578 3.420893 TCCTTTCATCGTGCAAATCCTT 58.579 40.909 0.00 0.00 0.00 3.36
5296 5579 3.012518 CTCCTTTCATCGTGCAAATCCT 58.987 45.455 0.00 0.00 0.00 3.24
5297 5580 3.009723 TCTCCTTTCATCGTGCAAATCC 58.990 45.455 0.00 0.00 0.00 3.01
5298 5581 4.393062 TCTTCTCCTTTCATCGTGCAAATC 59.607 41.667 0.00 0.00 0.00 2.17
5299 5582 4.326826 TCTTCTCCTTTCATCGTGCAAAT 58.673 39.130 0.00 0.00 0.00 2.32
5300 5583 3.738982 TCTTCTCCTTTCATCGTGCAAA 58.261 40.909 0.00 0.00 0.00 3.68
5301 5584 3.401033 TCTTCTCCTTTCATCGTGCAA 57.599 42.857 0.00 0.00 0.00 4.08
5302 5585 3.067106 GTTCTTCTCCTTTCATCGTGCA 58.933 45.455 0.00 0.00 0.00 4.57
5303 5586 3.067106 TGTTCTTCTCCTTTCATCGTGC 58.933 45.455 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.