Multiple sequence alignment - TraesCS5D01G508800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS5D01G508800
chr5D
100.000
2017
0
0
680
2696
533912774
533914790
0.000000e+00
3725.0
1
TraesCS5D01G508800
chr5D
100.000
315
0
0
1
315
533912095
533912409
1.390000e-162
582.0
2
TraesCS5D01G508800
chr5B
89.267
1528
70
31
680
2158
673988527
673990009
0.000000e+00
1827.0
3
TraesCS5D01G508800
chr5B
86.444
568
27
16
2111
2649
673990056
673990602
6.470000e-161
577.0
4
TraesCS5D01G508800
chr5B
81.230
309
30
17
20
315
673988221
673988514
9.710000e-55
224.0
5
TraesCS5D01G508800
chr4A
92.985
784
34
10
900
1670
637966852
637966077
0.000000e+00
1123.0
6
TraesCS5D01G508800
chr4A
91.429
350
15
6
1817
2158
637966070
637965728
1.460000e-127
466.0
7
TraesCS5D01G508800
chr4A
82.927
328
17
15
2
315
637967613
637967311
2.660000e-65
259.0
8
TraesCS5D01G508800
chr4A
82.845
239
11
19
2467
2696
637965512
637965295
1.270000e-43
187.0
9
TraesCS5D01G508800
chr3D
84.848
99
12
2
1138
1236
613747841
613747936
2.210000e-16
97.1
10
TraesCS5D01G508800
chr3B
92.308
65
5
0
1172
1236
822984291
822984355
2.860000e-15
93.5
11
TraesCS5D01G508800
chr3A
92.308
65
5
0
1172
1236
749415195
749415259
2.860000e-15
93.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS5D01G508800
chr5D
533912095
533914790
2695
False
2153.50
3725
100.0000
1
2696
2
chr5D.!!$F1
2695
1
TraesCS5D01G508800
chr5B
673988221
673990602
2381
False
876.00
1827
85.6470
20
2649
3
chr5B.!!$F1
2629
2
TraesCS5D01G508800
chr4A
637965295
637967613
2318
True
508.75
1123
87.5465
2
2696
4
chr4A.!!$R1
2694
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
828
1133
0.031917
TATAGCCCGTGGGTTCCTCA
60.032
55.0
6.82
0.0
37.65
3.86
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2433
2905
0.322975
GAGCAGCAGAGGGTGAAAGA
59.677
55.0
0.0
0.0
45.29
2.52
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
73
74
3.067601
CACCATCATCCATCCATGTGTTG
59.932
47.826
0.00
0.00
0.00
3.33
85
86
4.798882
TCCATGTGTTGTAAAACCTTCCT
58.201
39.130
0.00
0.00
0.00
3.36
96
97
6.718294
TGTAAAACCTTCCTAAATCCTCCTC
58.282
40.000
0.00
0.00
0.00
3.71
97
98
4.864483
AAACCTTCCTAAATCCTCCTCC
57.136
45.455
0.00
0.00
0.00
4.30
98
99
3.805360
ACCTTCCTAAATCCTCCTCCT
57.195
47.619
0.00
0.00
0.00
3.69
99
100
4.920781
ACCTTCCTAAATCCTCCTCCTA
57.079
45.455
0.00
0.00
0.00
2.94
100
101
4.558715
ACCTTCCTAAATCCTCCTCCTAC
58.441
47.826
0.00
0.00
0.00
3.18
101
102
4.015541
ACCTTCCTAAATCCTCCTCCTACA
60.016
45.833
0.00
0.00
0.00
2.74
107
109
2.238319
ATCCTCCTCCTACACGGCCA
62.238
60.000
2.24
0.00
0.00
5.36
124
126
2.034221
AGCCGAAAAGCCCCAGAC
59.966
61.111
0.00
0.00
0.00
3.51
125
127
3.062466
GCCGAAAAGCCCCAGACC
61.062
66.667
0.00
0.00
0.00
3.85
127
129
1.228429
CCGAAAAGCCCCAGACCAA
60.228
57.895
0.00
0.00
0.00
3.67
129
131
1.524008
CGAAAAGCCCCAGACCAACC
61.524
60.000
0.00
0.00
0.00
3.77
130
132
1.524008
GAAAAGCCCCAGACCAACCG
61.524
60.000
0.00
0.00
0.00
4.44
131
133
2.292785
AAAAGCCCCAGACCAACCGT
62.293
55.000
0.00
0.00
0.00
4.83
132
134
1.420532
AAAGCCCCAGACCAACCGTA
61.421
55.000
0.00
0.00
0.00
4.02
134
136
2.267961
CCCCAGACCAACCGTAGC
59.732
66.667
0.00
0.00
0.00
3.58
135
137
2.125673
CCCAGACCAACCGTAGCG
60.126
66.667
0.00
0.00
0.00
4.26
145
147
2.338984
CCGTAGCGGCTATCACCC
59.661
66.667
13.60
0.00
41.17
4.61
146
148
2.338984
CGTAGCGGCTATCACCCC
59.661
66.667
13.60
0.00
0.00
4.95
147
149
2.495409
CGTAGCGGCTATCACCCCA
61.495
63.158
13.60
0.00
0.00
4.96
148
150
1.827394
GTAGCGGCTATCACCCCAA
59.173
57.895
13.60
0.00
0.00
4.12
149
151
0.179468
GTAGCGGCTATCACCCCAAA
59.821
55.000
13.60
0.00
0.00
3.28
150
152
0.913205
TAGCGGCTATCACCCCAAAA
59.087
50.000
5.42
0.00
0.00
2.44
153
155
0.808755
CGGCTATCACCCCAAAACAC
59.191
55.000
0.00
0.00
0.00
3.32
250
281
4.735358
GTTTCCCTCCACGGCCCC
62.735
72.222
0.00
0.00
0.00
5.80
755
803
0.044244
CCTCCTCCTCCAAACCCCTA
59.956
60.000
0.00
0.00
0.00
3.53
757
805
0.797579
TCCTCCTCCAAACCCCTACT
59.202
55.000
0.00
0.00
0.00
2.57
758
806
1.205055
CCTCCTCCAAACCCCTACTC
58.795
60.000
0.00
0.00
0.00
2.59
759
807
1.205055
CTCCTCCAAACCCCTACTCC
58.795
60.000
0.00
0.00
0.00
3.85
760
808
0.253020
TCCTCCAAACCCCTACTCCC
60.253
60.000
0.00
0.00
0.00
4.30
762
810
2.253403
CTCCAAACCCCTACTCCCGC
62.253
65.000
0.00
0.00
0.00
6.13
764
812
3.396570
AAACCCCTACTCCCGCCG
61.397
66.667
0.00
0.00
0.00
6.46
809
1114
1.827399
CTCTGGTGGTTGGCCGTAGT
61.827
60.000
0.00
0.00
37.67
2.73
811
1116
0.539986
CTGGTGGTTGGCCGTAGTAT
59.460
55.000
0.00
0.00
37.67
2.12
812
1117
1.758280
CTGGTGGTTGGCCGTAGTATA
59.242
52.381
0.00
0.00
37.67
1.47
813
1118
1.758280
TGGTGGTTGGCCGTAGTATAG
59.242
52.381
0.00
0.00
37.67
1.31
814
1119
1.539712
GGTGGTTGGCCGTAGTATAGC
60.540
57.143
0.00
0.00
37.67
2.97
816
1121
0.034476
GGTTGGCCGTAGTATAGCCC
59.966
60.000
10.09
0.00
46.55
5.19
817
1122
0.319297
GTTGGCCGTAGTATAGCCCG
60.319
60.000
10.09
0.00
46.55
6.13
818
1123
0.756442
TTGGCCGTAGTATAGCCCGT
60.756
55.000
10.09
0.00
46.55
5.28
819
1124
1.288127
GGCCGTAGTATAGCCCGTG
59.712
63.158
0.00
0.00
41.00
4.94
820
1125
1.288127
GCCGTAGTATAGCCCGTGG
59.712
63.158
0.00
0.00
0.00
4.94
821
1126
1.962144
CCGTAGTATAGCCCGTGGG
59.038
63.158
0.00
0.00
38.57
4.61
822
1127
0.825010
CCGTAGTATAGCCCGTGGGT
60.825
60.000
6.82
0.00
37.65
4.51
828
1133
0.031917
TATAGCCCGTGGGTTCCTCA
60.032
55.000
6.82
0.00
37.65
3.86
830
1135
4.717313
GCCCGTGGGTTCCTCACC
62.717
72.222
6.82
0.00
46.46
4.02
884
1189
1.529152
CCGGCACCAAACCCCTAAAC
61.529
60.000
0.00
0.00
0.00
2.01
885
1190
1.529152
CGGCACCAAACCCCTAAACC
61.529
60.000
0.00
0.00
0.00
3.27
886
1191
1.189524
GGCACCAAACCCCTAAACCC
61.190
60.000
0.00
0.00
0.00
4.11
887
1192
0.470268
GCACCAAACCCCTAAACCCA
60.470
55.000
0.00
0.00
0.00
4.51
888
1193
1.334160
CACCAAACCCCTAAACCCAC
58.666
55.000
0.00
0.00
0.00
4.61
889
1194
0.178984
ACCAAACCCCTAAACCCACG
60.179
55.000
0.00
0.00
0.00
4.94
890
1195
1.529152
CCAAACCCCTAAACCCACGC
61.529
60.000
0.00
0.00
0.00
5.34
1027
1332
2.182030
CGGTCGAGAAGGTGAGCC
59.818
66.667
0.00
0.00
0.00
4.70
1070
1375
0.941463
CGTGCCCGATCTGTAGATGC
60.941
60.000
0.00
0.00
34.37
3.91
1073
1378
0.387878
GCCCGATCTGTAGATGCGAG
60.388
60.000
0.00
0.00
34.37
5.03
1111
1416
0.878523
TCTGACGTGTTTTGCCTCGG
60.879
55.000
0.00
0.00
0.00
4.63
1127
1432
2.747686
GGTCTGTTCGCAGGGGAA
59.252
61.111
0.00
0.00
45.04
3.97
1281
1586
2.236395
CCGATCTGTTGTCTAACCCCTT
59.764
50.000
0.00
0.00
35.92
3.95
1572
1911
3.112709
GTGGAGCTCCGCGTTGTC
61.113
66.667
29.54
9.04
39.43
3.18
1726
2065
1.764054
CAGCCCCACCTAGCTAGCT
60.764
63.158
23.12
23.12
37.18
3.32
1752
2091
1.405105
CAAGCGGAGAGAGGAGAAGAG
59.595
57.143
0.00
0.00
0.00
2.85
1753
2092
0.916086
AGCGGAGAGAGGAGAAGAGA
59.084
55.000
0.00
0.00
0.00
3.10
1754
2093
1.283613
AGCGGAGAGAGGAGAAGAGAA
59.716
52.381
0.00
0.00
0.00
2.87
1755
2094
1.676006
GCGGAGAGAGGAGAAGAGAAG
59.324
57.143
0.00
0.00
0.00
2.85
1756
2095
2.682563
GCGGAGAGAGGAGAAGAGAAGA
60.683
54.545
0.00
0.00
0.00
2.87
1757
2096
3.206150
CGGAGAGAGGAGAAGAGAAGAG
58.794
54.545
0.00
0.00
0.00
2.85
1758
2097
3.118408
CGGAGAGAGGAGAAGAGAAGAGA
60.118
52.174
0.00
0.00
0.00
3.10
1759
2098
4.625324
CGGAGAGAGGAGAAGAGAAGAGAA
60.625
50.000
0.00
0.00
0.00
2.87
1760
2099
4.884164
GGAGAGAGGAGAAGAGAAGAGAAG
59.116
50.000
0.00
0.00
0.00
2.85
1761
2100
5.339200
GGAGAGAGGAGAAGAGAAGAGAAGA
60.339
48.000
0.00
0.00
0.00
2.87
1930
2276
8.635983
CAATAATGAATGAATGAACGATGATGC
58.364
33.333
0.00
0.00
0.00
3.91
1931
2277
5.761165
ATGAATGAATGAACGATGATGCA
57.239
34.783
0.00
0.00
0.00
3.96
1934
2286
2.635714
TGAATGAACGATGATGCAGCT
58.364
42.857
2.53
0.00
0.00
4.24
1958
2310
3.647824
GCTGCTGCTGTTCTTCGT
58.352
55.556
8.53
0.00
36.03
3.85
1986
2339
2.781945
AGCGGCTTTGTTCTTTCTTG
57.218
45.000
0.00
0.00
0.00
3.02
2012
2365
4.363999
CCTAGTAGCAGCTGTGATGTTAC
58.636
47.826
16.64
8.64
35.35
2.50
2050
2404
8.144862
AGTAGCGGTTATCCTAGTAGTAGTAT
57.855
38.462
3.91
0.00
0.00
2.12
2136
2493
0.035725
TGGCTCCAGATCTGTGCAAG
60.036
55.000
27.69
18.04
32.45
4.01
2166
2620
1.172180
TTCACCTGAAAGCGGGCTTG
61.172
55.000
6.69
0.00
44.98
4.01
2170
2624
1.303309
CCTGAAAGCGGGCTTGATAG
58.697
55.000
6.69
5.88
36.26
2.08
2192
2646
0.675837
GCTCCAGATCTGTGCAAGCA
60.676
55.000
24.20
0.00
0.00
3.91
2206
2660
0.039165
CAAGCACCCGCCTTTTCTTC
60.039
55.000
0.00
0.00
39.83
2.87
2207
2661
1.179174
AAGCACCCGCCTTTTCTTCC
61.179
55.000
0.00
0.00
39.83
3.46
2209
2663
1.074951
CACCCGCCTTTTCTTCCCT
59.925
57.895
0.00
0.00
0.00
4.20
2211
2665
1.745489
CCCGCCTTTTCTTCCCTCG
60.745
63.158
0.00
0.00
0.00
4.63
2238
2705
3.199727
TGAAATTCATCCCAGGTGATCGA
59.800
43.478
0.00
0.00
0.00
3.59
2239
2706
4.141413
TGAAATTCATCCCAGGTGATCGAT
60.141
41.667
0.00
0.00
0.00
3.59
2240
2707
3.692257
ATTCATCCCAGGTGATCGATC
57.308
47.619
18.72
18.72
0.00
3.69
2241
2708
2.388526
TCATCCCAGGTGATCGATCT
57.611
50.000
25.02
3.30
0.00
2.75
2242
2709
1.966354
TCATCCCAGGTGATCGATCTG
59.034
52.381
25.02
15.25
0.00
2.90
2243
2710
0.683973
ATCCCAGGTGATCGATCTGC
59.316
55.000
25.02
17.16
0.00
4.26
2244
2711
1.070445
CCCAGGTGATCGATCTGCC
59.930
63.158
25.02
23.96
0.00
4.85
2245
2712
1.689243
CCCAGGTGATCGATCTGCCA
61.689
60.000
28.39
10.46
0.00
4.92
2280
2747
0.391528
TCTGATGTGATGGTGCACGG
60.392
55.000
11.45
0.00
41.63
4.94
2282
2749
1.377202
GATGTGATGGTGCACGGGT
60.377
57.895
11.45
0.00
41.63
5.28
2304
2771
1.452108
GTTTCCGCCTGGGATCTGG
60.452
63.158
0.00
0.00
46.62
3.86
2305
2772
2.679342
TTTCCGCCTGGGATCTGGG
61.679
63.158
0.00
0.00
46.62
4.45
2308
2775
3.411517
CGCCTGGGATCTGGGGTT
61.412
66.667
0.00
0.00
39.16
4.11
2431
2903
0.250338
GAAAAGTCAGCACCCGGTCT
60.250
55.000
0.00
0.00
0.00
3.85
2433
2905
0.182775
AAAGTCAGCACCCGGTCTTT
59.817
50.000
0.00
0.00
0.00
2.52
2434
2906
0.250338
AAGTCAGCACCCGGTCTTTC
60.250
55.000
0.00
0.00
0.00
2.62
2437
2909
0.472471
TCAGCACCCGGTCTTTCTTT
59.528
50.000
0.00
0.00
0.00
2.52
2452
2926
0.322975
TCTTTCACCCTCTGCTGCTC
59.677
55.000
0.00
0.00
0.00
4.26
2457
2931
2.268280
CCCTCTGCTGCTCCACTG
59.732
66.667
0.00
0.00
0.00
3.66
2462
2936
2.031616
TGCTGCTCCACTGCACTC
59.968
61.111
0.00
0.00
46.94
3.51
2494
2972
2.674380
CCAGCTTTCAGCCCGCTT
60.674
61.111
0.00
0.00
43.77
4.68
2542
3024
0.477597
AGTGGGGTGGAGGAATCCAA
60.478
55.000
0.61
0.00
42.10
3.53
2555
3037
5.221742
GGAGGAATCCAAACCCTATCTACTG
60.222
48.000
0.61
0.00
0.00
2.74
2556
3038
4.660771
AGGAATCCAAACCCTATCTACTGG
59.339
45.833
0.61
0.00
0.00
4.00
2557
3039
4.658901
GGAATCCAAACCCTATCTACTGGA
59.341
45.833
0.00
0.00
37.37
3.86
2558
3040
5.221742
GGAATCCAAACCCTATCTACTGGAG
60.222
48.000
0.00
0.00
36.45
3.86
2559
3041
4.348020
TCCAAACCCTATCTACTGGAGT
57.652
45.455
0.00
0.00
0.00
3.85
2582
3067
1.120530
AGTATCCCGATGTGTGACCC
58.879
55.000
0.00
0.00
0.00
4.46
2584
3069
1.119684
TATCCCGATGTGTGACCCAG
58.880
55.000
0.00
0.00
0.00
4.45
2585
3070
2.257409
ATCCCGATGTGTGACCCAGC
62.257
60.000
0.00
0.00
0.00
4.85
2586
3071
2.815211
CCGATGTGTGACCCAGCG
60.815
66.667
0.00
0.00
41.08
5.18
2587
3072
2.815211
CGATGTGTGACCCAGCGG
60.815
66.667
0.00
0.00
38.01
5.52
2649
3139
2.359975
CTTGTTCGGGAGGGTGCC
60.360
66.667
0.00
0.00
0.00
5.01
2650
3140
3.920093
CTTGTTCGGGAGGGTGCCC
62.920
68.421
0.00
0.00
45.10
5.36
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
0
1
4.940046
TCTTTGTGGTTTGTGTTAACGGTA
59.060
37.500
0.26
0.00
0.00
4.02
73
74
6.069556
AGGAGGAGGATTTAGGAAGGTTTTAC
60.070
42.308
0.00
0.00
0.00
2.01
85
86
2.037144
GCCGTGTAGGAGGAGGATTTA
58.963
52.381
0.00
0.00
45.00
1.40
107
109
2.034221
GTCTGGGGCTTTTCGGCT
59.966
61.111
0.00
0.00
38.46
5.52
129
131
2.023414
TTGGGGTGATAGCCGCTACG
62.023
60.000
1.14
0.00
41.45
3.51
130
132
0.179468
TTTGGGGTGATAGCCGCTAC
59.821
55.000
1.14
0.00
41.45
3.58
131
133
0.913205
TTTTGGGGTGATAGCCGCTA
59.087
50.000
1.73
1.73
41.45
4.26
132
134
0.679960
GTTTTGGGGTGATAGCCGCT
60.680
55.000
0.00
0.00
41.45
5.52
134
136
0.808755
GTGTTTTGGGGTGATAGCCG
59.191
55.000
0.00
0.00
36.39
5.52
135
137
2.092323
GAGTGTTTTGGGGTGATAGCC
58.908
52.381
0.00
0.00
34.31
3.93
136
138
2.790433
TGAGTGTTTTGGGGTGATAGC
58.210
47.619
0.00
0.00
0.00
2.97
137
139
4.396166
GTGATGAGTGTTTTGGGGTGATAG
59.604
45.833
0.00
0.00
0.00
2.08
138
140
4.042809
AGTGATGAGTGTTTTGGGGTGATA
59.957
41.667
0.00
0.00
0.00
2.15
139
141
3.157087
GTGATGAGTGTTTTGGGGTGAT
58.843
45.455
0.00
0.00
0.00
3.06
140
142
2.174639
AGTGATGAGTGTTTTGGGGTGA
59.825
45.455
0.00
0.00
0.00
4.02
141
143
2.554032
GAGTGATGAGTGTTTTGGGGTG
59.446
50.000
0.00
0.00
0.00
4.61
142
144
2.810400
CGAGTGATGAGTGTTTTGGGGT
60.810
50.000
0.00
0.00
0.00
4.95
143
145
1.806542
CGAGTGATGAGTGTTTTGGGG
59.193
52.381
0.00
0.00
0.00
4.96
144
146
2.480419
GTCGAGTGATGAGTGTTTTGGG
59.520
50.000
0.00
0.00
0.00
4.12
145
147
3.130633
TGTCGAGTGATGAGTGTTTTGG
58.869
45.455
0.00
0.00
0.00
3.28
146
148
4.794248
TTGTCGAGTGATGAGTGTTTTG
57.206
40.909
0.00
0.00
0.00
2.44
147
149
4.260784
GCTTTGTCGAGTGATGAGTGTTTT
60.261
41.667
0.00
0.00
0.00
2.43
148
150
3.248602
GCTTTGTCGAGTGATGAGTGTTT
59.751
43.478
0.00
0.00
0.00
2.83
149
151
2.802816
GCTTTGTCGAGTGATGAGTGTT
59.197
45.455
0.00
0.00
0.00
3.32
150
152
2.224042
TGCTTTGTCGAGTGATGAGTGT
60.224
45.455
0.00
0.00
0.00
3.55
153
155
1.388093
CGTGCTTTGTCGAGTGATGAG
59.612
52.381
0.00
0.00
0.00
2.90
207
238
1.173913
GGGTGGAGGGAAATGAAACG
58.826
55.000
0.00
0.00
0.00
3.60
208
239
2.604912
AGGGTGGAGGGAAATGAAAC
57.395
50.000
0.00
0.00
0.00
2.78
209
240
3.628832
AAAGGGTGGAGGGAAATGAAA
57.371
42.857
0.00
0.00
0.00
2.69
210
241
3.506398
GAAAAGGGTGGAGGGAAATGAA
58.494
45.455
0.00
0.00
0.00
2.57
211
242
2.225267
GGAAAAGGGTGGAGGGAAATGA
60.225
50.000
0.00
0.00
0.00
2.57
250
281
4.845307
GGGGGAGGGAAGAGGGGG
62.845
77.778
0.00
0.00
0.00
5.40
755
803
4.143333
CGATTGGTCGGCGGGAGT
62.143
66.667
7.21
0.00
44.00
3.85
764
812
0.103208
ACTGGCTCGATCGATTGGTC
59.897
55.000
19.78
9.46
0.00
4.02
768
816
4.427394
GCACTGGCTCGATCGATT
57.573
55.556
19.78
0.00
36.96
3.34
809
1114
0.031917
TGAGGAACCCACGGGCTATA
60.032
55.000
0.69
0.00
39.32
1.31
811
1116
2.120940
TGAGGAACCCACGGGCTA
59.879
61.111
0.69
0.00
39.32
3.93
812
1117
3.637273
GTGAGGAACCCACGGGCT
61.637
66.667
0.69
0.00
39.32
5.19
813
1118
4.717313
GGTGAGGAACCCACGGGC
62.717
72.222
0.69
0.00
44.02
6.13
820
1125
0.173708
CTCTGCTACGGTGAGGAACC
59.826
60.000
0.00
0.00
46.60
3.62
821
1126
1.174783
TCTCTGCTACGGTGAGGAAC
58.825
55.000
0.00
0.00
0.00
3.62
822
1127
2.025155
GATCTCTGCTACGGTGAGGAA
58.975
52.381
0.00
0.00
0.00
3.36
864
1169
3.871850
TTAGGGGTTTGGTGCCGGC
62.872
63.158
22.73
22.73
0.00
6.13
865
1170
1.228613
TTTAGGGGTTTGGTGCCGG
60.229
57.895
0.00
0.00
0.00
6.13
866
1171
1.529152
GGTTTAGGGGTTTGGTGCCG
61.529
60.000
0.00
0.00
0.00
5.69
1070
1375
0.609131
AACACCAAATCCCTGCCTCG
60.609
55.000
0.00
0.00
0.00
4.63
1073
1378
1.478105
GATCAACACCAAATCCCTGCC
59.522
52.381
0.00
0.00
0.00
4.85
1281
1586
3.762407
TCACAGATCGGGAAAGAACAA
57.238
42.857
0.00
0.00
0.00
2.83
1362
1680
0.337082
TCTTCCTGTACCGGATCCCA
59.663
55.000
9.46
0.00
32.02
4.37
1509
1848
1.059098
TCTTCTTCTTGGGCTGCTGA
58.941
50.000
0.00
0.00
0.00
4.26
1569
1908
1.228124
CTCCTTGCCAAACCCGACA
60.228
57.895
0.00
0.00
0.00
4.35
1572
1911
2.115266
ACCTCCTTGCCAAACCCG
59.885
61.111
0.00
0.00
0.00
5.28
1578
1917
3.177884
AGCACCACCTCCTTGCCA
61.178
61.111
0.00
0.00
36.91
4.92
1726
2065
1.670949
CCTCTCTCCGCTTGCTGCTA
61.671
60.000
0.00
0.00
40.11
3.49
1744
2083
6.122277
TCATCTCTCTTCTCTTCTCTTCTCC
58.878
44.000
0.00
0.00
0.00
3.71
1752
2091
5.684704
TCTCCTCTCATCTCTCTTCTCTTC
58.315
45.833
0.00
0.00
0.00
2.87
1753
2092
5.715439
TCTCCTCTCATCTCTCTTCTCTT
57.285
43.478
0.00
0.00
0.00
2.85
1754
2093
5.222007
GGATCTCCTCTCATCTCTCTTCTCT
60.222
48.000
0.00
0.00
0.00
3.10
1755
2094
5.006386
GGATCTCCTCTCATCTCTCTTCTC
58.994
50.000
0.00
0.00
0.00
2.87
1756
2095
4.416513
TGGATCTCCTCTCATCTCTCTTCT
59.583
45.833
0.00
0.00
36.82
2.85
1757
2096
4.728772
TGGATCTCCTCTCATCTCTCTTC
58.271
47.826
0.00
0.00
36.82
2.87
1758
2097
4.416513
TCTGGATCTCCTCTCATCTCTCTT
59.583
45.833
0.00
0.00
36.82
2.85
1759
2098
3.982730
TCTGGATCTCCTCTCATCTCTCT
59.017
47.826
0.00
0.00
36.82
3.10
1760
2099
4.202503
ACTCTGGATCTCCTCTCATCTCTC
60.203
50.000
0.00
0.00
36.82
3.20
1761
2100
3.723681
ACTCTGGATCTCCTCTCATCTCT
59.276
47.826
0.00
0.00
36.82
3.10
1943
2295
2.253758
GGCACGAAGAACAGCAGCA
61.254
57.895
0.00
0.00
0.00
4.41
1958
2310
2.034066
AAAGCCGCTAAGCTGGCA
59.966
55.556
14.66
0.00
45.36
4.92
1986
2339
1.066858
TCACAGCTGCTACTAGGCAAC
60.067
52.381
15.27
0.00
41.94
4.17
2012
2365
3.549794
ACCGCTACTACTACTACTTGGG
58.450
50.000
0.00
0.00
0.00
4.12
2050
2404
4.062293
GCAATGTTACACACTACCACTGA
58.938
43.478
0.00
0.00
0.00
3.41
2136
2493
4.791088
GCTTTCAGGTGAAAAAGAGAGTGC
60.791
45.833
6.61
1.01
42.72
4.40
2192
2646
1.379146
GAGGGAAGAAAAGGCGGGT
59.621
57.895
0.00
0.00
0.00
5.28
2206
2660
1.332997
GATGAATTTCAGCTGCGAGGG
59.667
52.381
9.47
0.00
28.67
4.30
2207
2661
1.332997
GGATGAATTTCAGCTGCGAGG
59.667
52.381
9.47
0.00
32.54
4.63
2209
2663
1.339920
TGGGATGAATTTCAGCTGCGA
60.340
47.619
9.47
0.00
32.54
5.10
2211
2665
1.407979
CCTGGGATGAATTTCAGCTGC
59.592
52.381
9.47
0.00
32.54
5.25
2244
2711
6.918022
CACATCAGATCAAACATCCATCAATG
59.082
38.462
0.00
0.00
0.00
2.82
2245
2712
6.831868
TCACATCAGATCAAACATCCATCAAT
59.168
34.615
0.00
0.00
0.00
2.57
2280
2747
2.983592
CCAGGCGGAAACACCACC
60.984
66.667
0.00
0.00
40.94
4.61
2282
2749
2.478335
GATCCCAGGCGGAAACACCA
62.478
60.000
0.00
0.00
46.47
4.17
2291
2758
3.411517
AACCCCAGATCCCAGGCG
61.412
66.667
0.00
0.00
0.00
5.52
2295
2762
3.727258
CGCCAACCCCAGATCCCA
61.727
66.667
0.00
0.00
0.00
4.37
2308
2775
3.536917
CTACTCATCCGGCCGCCA
61.537
66.667
22.85
8.89
0.00
5.69
2431
2903
1.143684
AGCAGCAGAGGGTGAAAGAAA
59.856
47.619
0.00
0.00
45.29
2.52
2433
2905
0.322975
GAGCAGCAGAGGGTGAAAGA
59.677
55.000
0.00
0.00
45.29
2.52
2434
2906
0.676151
GGAGCAGCAGAGGGTGAAAG
60.676
60.000
0.00
0.00
45.29
2.62
2437
2909
2.203832
TGGAGCAGCAGAGGGTGA
60.204
61.111
0.00
0.00
45.29
4.02
2452
2926
1.964891
CAGCAGTGGAGTGCAGTGG
60.965
63.158
19.69
1.85
46.60
4.00
2457
2931
2.281345
ACAGCAGCAGTGGAGTGC
60.281
61.111
0.00
0.00
44.35
4.40
2462
2936
2.111669
TGGTGACAGCAGCAGTGG
59.888
61.111
2.50
0.00
46.66
4.00
2483
2961
2.669569
GTGAGCAAGCGGGCTGAA
60.670
61.111
9.95
0.00
45.99
3.02
2484
2962
3.596066
GAGTGAGCAAGCGGGCTGA
62.596
63.158
9.95
0.00
45.99
4.26
2494
2972
0.390492
CCAGTGTCAGTGAGTGAGCA
59.610
55.000
9.36
0.00
35.13
4.26
2555
3037
4.215827
CACACATCGGGATACTACTACTCC
59.784
50.000
0.00
0.00
0.00
3.85
2556
3038
5.049543
GTCACACATCGGGATACTACTACTC
60.050
48.000
0.00
0.00
0.00
2.59
2557
3039
4.820716
GTCACACATCGGGATACTACTACT
59.179
45.833
0.00
0.00
0.00
2.57
2558
3040
4.023365
GGTCACACATCGGGATACTACTAC
60.023
50.000
0.00
0.00
0.00
2.73
2559
3041
4.139786
GGTCACACATCGGGATACTACTA
58.860
47.826
0.00
0.00
0.00
1.82
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.