Multiple sequence alignment - TraesCS5D01G508500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G508500 chr5D 100.000 7870 0 0 1 7870 533646232 533638363 0.000000e+00 14534.0
1 TraesCS5D01G508500 chr5D 89.597 1836 145 26 1002 2811 533666528 533664713 0.000000e+00 2290.0
2 TraesCS5D01G508500 chr5D 84.168 1358 178 22 1482 2812 533868309 533866962 0.000000e+00 1282.0
3 TraesCS5D01G508500 chr5D 88.313 830 65 18 4606 5416 533659927 533659111 0.000000e+00 966.0
4 TraesCS5D01G508500 chr5D 82.962 1121 129 32 3069 4130 533866964 533865847 0.000000e+00 955.0
5 TraesCS5D01G508500 chr5D 92.166 434 30 2 4091 4524 533660354 533659925 1.880000e-170 610.0
6 TraesCS5D01G508500 chr5D 89.460 389 17 8 5405 5790 533659086 533658719 3.320000e-128 470.0
7 TraesCS5D01G508500 chr5D 96.947 262 8 0 2810 3071 203290363 203290102 2.610000e-119 440.0
8 TraesCS5D01G508500 chr5D 89.796 343 30 4 5064 5405 533864505 533864167 1.210000e-117 435.0
9 TraesCS5D01G508500 chr5D 84.881 377 52 3 6146 6521 533658678 533658306 7.460000e-100 375.0
10 TraesCS5D01G508500 chr5D 84.135 416 35 8 4139 4524 533865734 533865320 2.680000e-99 374.0
11 TraesCS5D01G508500 chr5D 87.907 215 20 5 4751 4964 533865104 533864895 1.700000e-61 248.0
12 TraesCS5D01G508500 chr5D 91.954 87 7 0 4522 4608 270222345 270222431 1.070000e-23 122.0
13 TraesCS5D01G508500 chr5D 97.727 44 1 0 4703 4746 340516179 340516136 8.470000e-10 76.8
14 TraesCS5D01G508500 chr4A 96.554 3569 95 12 3069 6616 638215249 638218810 0.000000e+00 5884.0
15 TraesCS5D01G508500 chr4A 96.878 1858 45 7 964 2812 638213398 638215251 0.000000e+00 3097.0
16 TraesCS5D01G508500 chr4A 94.597 944 29 12 1 930 638212472 638213407 0.000000e+00 1441.0
17 TraesCS5D01G508500 chr4A 84.343 1354 173 25 1482 2810 638170264 638171603 0.000000e+00 1290.0
18 TraesCS5D01G508500 chr4A 85.018 821 70 23 3744 4513 638172433 638173251 0.000000e+00 785.0
19 TraesCS5D01G508500 chr4A 88.921 343 34 3 5064 5405 638174092 638174431 3.400000e-113 420.0
20 TraesCS5D01G508500 chr4A 89.573 211 19 3 4751 4961 638173486 638173693 1.680000e-66 265.0
21 TraesCS5D01G508500 chr4A 95.745 47 1 1 4702 4747 338747810 338747764 3.050000e-09 75.0
22 TraesCS5D01G508500 chr5B 96.147 3556 97 16 3069 6603 673690231 673686695 0.000000e+00 5771.0
23 TraesCS5D01G508500 chr5B 93.793 1595 69 10 1032 2617 673692035 673690462 0.000000e+00 2370.0
24 TraesCS5D01G508500 chr5B 84.928 1526 159 34 3069 4524 673937641 673936117 0.000000e+00 1478.0
25 TraesCS5D01G508500 chr5B 84.145 1356 182 20 1482 2814 673938982 673937637 0.000000e+00 1282.0
26 TraesCS5D01G508500 chr5B 87.899 909 107 3 3380 4286 597233416 597234323 0.000000e+00 1066.0
27 TraesCS5D01G508500 chr5B 90.427 679 46 9 4754 5416 673765005 673764330 0.000000e+00 876.0
28 TraesCS5D01G508500 chr5B 93.973 448 17 2 6827 7265 673686178 673685732 0.000000e+00 669.0
29 TraesCS5D01G508500 chr5B 86.882 587 49 12 7296 7870 673685522 673684952 4.010000e-177 632.0
30 TraesCS5D01G508500 chr5B 82.721 735 98 21 1184 1907 597232694 597233410 1.860000e-175 627.0
31 TraesCS5D01G508500 chr5B 92.396 434 29 2 4091 4524 673765531 673765102 4.040000e-172 616.0
32 TraesCS5D01G508500 chr5B 92.896 366 19 5 3 365 673757496 673757135 7.000000e-145 525.0
33 TraesCS5D01G508500 chr5B 84.083 578 55 18 353 917 673692644 673692091 2.520000e-144 523.0
34 TraesCS5D01G508500 chr5B 88.946 389 19 8 5405 5790 673764290 673763923 7.200000e-125 459.0
35 TraesCS5D01G508500 chr5B 89.213 343 33 3 5064 5405 673935303 673934964 7.300000e-115 425.0
36 TraesCS5D01G508500 chr5B 97.674 215 5 0 2598 2812 673690443 673690229 3.470000e-98 370.0
37 TraesCS5D01G508500 chr5B 83.820 377 53 5 6146 6521 673763882 673763513 1.260000e-92 351.0
38 TraesCS5D01G508500 chr5B 85.836 353 23 11 6744 7082 673763347 673763008 4.520000e-92 350.0
39 TraesCS5D01G508500 chr5B 94.030 134 7 1 6624 6757 673686310 673686178 1.340000e-47 202.0
40 TraesCS5D01G508500 chr5B 94.253 87 5 0 4522 4608 306447511 306447597 4.950000e-27 134.0
41 TraesCS5D01G508500 chr5B 100.000 29 0 0 7793 7821 108847135 108847107 4.000000e-03 54.7
42 TraesCS5D01G508500 chr6D 89.078 1410 109 23 4606 5980 352906205 352904806 0.000000e+00 1709.0
43 TraesCS5D01G508500 chr6D 91.363 1262 89 8 3273 4524 352907454 352906203 0.000000e+00 1709.0
44 TraesCS5D01G508500 chr6D 89.510 1020 97 4 1795 2811 352908702 352907690 0.000000e+00 1282.0
45 TraesCS5D01G508500 chr6D 88.071 964 103 6 3564 4524 406560116 406559162 0.000000e+00 1133.0
46 TraesCS5D01G508500 chr6D 87.826 460 49 6 1354 1808 352909670 352909213 4.180000e-147 532.0
47 TraesCS5D01G508500 chr6D 86.241 407 50 5 6131 6534 352904862 352904459 3.370000e-118 436.0
48 TraesCS5D01G508500 chr4B 85.330 1411 146 38 3164 4524 14393728 14395127 0.000000e+00 1402.0
49 TraesCS5D01G508500 chr4B 84.440 1356 173 28 1482 2812 14392137 14393479 0.000000e+00 1301.0
50 TraesCS5D01G508500 chr4B 95.802 262 9 2 2811 3071 160995852 160995592 9.440000e-114 422.0
51 TraesCS5D01G508500 chr4B 100.000 42 0 0 4705 4746 564902383 564902342 2.350000e-10 78.7
52 TraesCS5D01G508500 chr4B 94.444 36 1 1 7787 7821 167353480 167353515 4.000000e-03 54.7
53 TraesCS5D01G508500 chr6B 88.009 909 106 3 3380 4286 504290535 504291442 0.000000e+00 1072.0
54 TraesCS5D01G508500 chr6B 82.585 735 99 21 1184 1907 504289813 504290529 8.670000e-174 621.0
55 TraesCS5D01G508500 chr6B 95.880 267 11 0 2811 3077 676298205 676297939 4.360000e-117 433.0
56 TraesCS5D01G508500 chr6B 83.989 356 37 13 4606 4961 687250701 687251036 2.740000e-84 324.0
57 TraesCS5D01G508500 chr6B 94.340 53 2 1 4703 4754 20393387 20393439 6.550000e-11 80.5
58 TraesCS5D01G508500 chr3B 88.009 909 106 3 3380 4286 677306442 677305535 0.000000e+00 1072.0
59 TraesCS5D01G508500 chr3B 87.789 909 107 4 3380 4286 144789954 144790860 0.000000e+00 1061.0
60 TraesCS5D01G508500 chr3B 82.721 735 98 21 1184 1907 144789232 144789948 1.860000e-175 627.0
61 TraesCS5D01G508500 chr3B 82.787 732 97 21 1187 1907 677307161 677306448 1.860000e-175 627.0
62 TraesCS5D01G508500 chr3B 82.584 356 43 11 4606 4961 7080576 7080912 5.970000e-76 296.0
63 TraesCS5D01G508500 chr3B 77.663 291 52 8 1079 1363 386947342 386947059 1.760000e-36 165.0
64 TraesCS5D01G508500 chr3B 93.617 94 6 0 5406 5499 556538583 556538490 2.960000e-29 141.0
65 TraesCS5D01G508500 chr7A 87.463 678 78 5 3851 4524 94704707 94704033 0.000000e+00 774.0
66 TraesCS5D01G508500 chr7A 83.287 359 40 13 4606 4964 82160423 82160085 5.930000e-81 313.0
67 TraesCS5D01G508500 chr7A 81.551 374 50 11 4606 4979 94704035 94703681 2.780000e-74 291.0
68 TraesCS5D01G508500 chr7A 80.617 227 36 4 6277 6502 680390402 680390621 1.360000e-37 169.0
69 TraesCS5D01G508500 chr7A 87.619 105 11 2 4515 4619 720848302 720848404 3.860000e-23 121.0
70 TraesCS5D01G508500 chr2A 96.324 272 10 0 2806 3077 696827278 696827007 1.560000e-121 448.0
71 TraesCS5D01G508500 chr2D 97.328 262 7 0 2810 3071 170533478 170533739 5.600000e-121 446.0
72 TraesCS5D01G508500 chr2B 96.241 266 8 2 2809 3074 420446664 420446927 1.210000e-117 435.0
73 TraesCS5D01G508500 chr2B 94.737 95 5 0 5405 5499 166470897 166470803 1.770000e-31 148.0
74 TraesCS5D01G508500 chr7D 96.183 262 10 0 2810 3071 552476166 552475905 5.640000e-116 429.0
75 TraesCS5D01G508500 chr7D 80.906 309 57 2 6193 6500 376955374 376955067 7.890000e-60 243.0
76 TraesCS5D01G508500 chr7D 79.936 314 50 8 6193 6502 588790185 588789881 1.330000e-52 219.0
77 TraesCS5D01G508500 chr7D 91.579 95 6 2 4519 4611 121937342 121937436 6.410000e-26 130.0
78 TraesCS5D01G508500 chr6A 96.169 261 10 0 2811 3071 603775722 603775462 2.030000e-115 427.0
79 TraesCS5D01G508500 chr6A 97.674 43 1 0 952 994 135644485 135644527 3.050000e-09 75.0
80 TraesCS5D01G508500 chr3D 95.802 262 9 2 2810 3071 152235478 152235219 9.440000e-114 422.0
81 TraesCS5D01G508500 chr3D 79.849 397 73 7 3973 4368 554073333 554072943 4.650000e-72 283.0
82 TraesCS5D01G508500 chr3D 80.800 250 38 6 4977 5220 554070991 554070746 3.750000e-43 187.0
83 TraesCS5D01G508500 chr1A 86.957 299 37 2 4079 4376 10814198 10814495 1.270000e-87 335.0
84 TraesCS5D01G508500 chr7B 83.287 359 40 13 4606 4964 606781811 606781473 5.930000e-81 313.0
85 TraesCS5D01G508500 chr5A 93.684 95 6 0 5405 5499 244758073 244757979 8.230000e-30 143.0
86 TraesCS5D01G508500 chr5A 94.253 87 5 0 4522 4608 359044347 359044433 4.950000e-27 134.0
87 TraesCS5D01G508500 chr3A 93.684 95 6 0 5405 5499 466795724 466795818 8.230000e-30 143.0
88 TraesCS5D01G508500 chr1B 92.632 95 6 1 4514 4608 618697571 618697664 1.380000e-27 135.0
89 TraesCS5D01G508500 chr1B 100.000 42 0 0 4705 4746 386519898 386519939 2.350000e-10 78.7
90 TraesCS5D01G508500 chr4D 89.130 92 9 1 4517 4608 481171032 481170942 6.450000e-21 113.0
91 TraesCS5D01G508500 chr4D 97.778 45 1 0 4706 4750 287544124 287544168 2.350000e-10 78.7
92 TraesCS5D01G508500 chr4D 97.826 46 0 1 4702 4746 486185387 486185342 2.350000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G508500 chr5D 533638363 533646232 7869 True 14534.000000 14534 100.000000 1 7870 1 chr5D.!!$R3 7869
1 TraesCS5D01G508500 chr5D 533664713 533666528 1815 True 2290.000000 2290 89.597000 1002 2811 1 chr5D.!!$R4 1809
2 TraesCS5D01G508500 chr5D 533864167 533868309 4142 True 658.800000 1282 85.793600 1482 5405 5 chr5D.!!$R6 3923
3 TraesCS5D01G508500 chr5D 533658306 533660354 2048 True 605.250000 966 88.705000 4091 6521 4 chr5D.!!$R5 2430
4 TraesCS5D01G508500 chr4A 638212472 638218810 6338 False 3474.000000 5884 96.009667 1 6616 3 chr4A.!!$F2 6615
5 TraesCS5D01G508500 chr4A 638170264 638174431 4167 False 690.000000 1290 86.963750 1482 5405 4 chr4A.!!$F1 3923
6 TraesCS5D01G508500 chr5B 673684952 673692644 7692 True 1505.285714 5771 92.368857 353 7870 7 chr5B.!!$R3 7517
7 TraesCS5D01G508500 chr5B 673934964 673938982 4018 True 1061.666667 1478 86.095333 1482 5405 3 chr5B.!!$R5 3923
8 TraesCS5D01G508500 chr5B 597232694 597234323 1629 False 846.500000 1066 85.310000 1184 4286 2 chr5B.!!$F2 3102
9 TraesCS5D01G508500 chr5B 673763008 673765531 2523 True 530.400000 876 88.285000 4091 7082 5 chr5B.!!$R4 2991
10 TraesCS5D01G508500 chr6D 352904459 352909670 5211 True 1133.600000 1709 88.803600 1354 6534 5 chr6D.!!$R2 5180
11 TraesCS5D01G508500 chr6D 406559162 406560116 954 True 1133.000000 1133 88.071000 3564 4524 1 chr6D.!!$R1 960
12 TraesCS5D01G508500 chr4B 14392137 14395127 2990 False 1351.500000 1402 84.885000 1482 4524 2 chr4B.!!$F2 3042
13 TraesCS5D01G508500 chr6B 504289813 504291442 1629 False 846.500000 1072 85.297000 1184 4286 2 chr6B.!!$F3 3102
14 TraesCS5D01G508500 chr3B 677305535 677307161 1626 True 849.500000 1072 85.398000 1187 4286 2 chr3B.!!$R3 3099
15 TraesCS5D01G508500 chr3B 144789232 144790860 1628 False 844.000000 1061 85.255000 1184 4286 2 chr3B.!!$F2 3102
16 TraesCS5D01G508500 chr7A 94703681 94704707 1026 True 532.500000 774 84.507000 3851 4979 2 chr7A.!!$R2 1128
17 TraesCS5D01G508500 chr3D 554070746 554073333 2587 True 235.000000 283 80.324500 3973 5220 2 chr3D.!!$R2 1247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 985 1.007387 CGTTTGCTGTTTGCTCCCC 60.007 57.895 0.00 0.00 43.37 4.81 F
1267 1314 1.415659 GCAGCTGAGGTATGGACATCT 59.584 52.381 20.43 0.00 37.28 2.90 F
2474 3087 1.827789 GCAGGTTCAGGTTGGCACA 60.828 57.895 0.00 0.00 0.00 4.57 F
2827 3483 2.019807 TGTACTCCCTCCGTTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11 F
2868 3524 2.093921 TGTGTCGAGTCAAACTTCACCA 60.094 45.455 0.00 0.00 0.00 4.17 F
2869 3525 2.933906 GTGTCGAGTCAAACTTCACCAA 59.066 45.455 0.00 0.00 0.00 3.67 F
2870 3526 2.933906 TGTCGAGTCAAACTTCACCAAC 59.066 45.455 0.00 0.00 0.00 3.77 F
3066 3722 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30 F
3067 3723 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20 F
5654 8510 2.044650 CAGCTCCATGGTGGTGGG 60.045 66.667 29.73 12.23 39.03 4.61 F
6390 9268 0.179145 CTACCGTTACCGTGAGCTGG 60.179 60.000 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2847 3503 2.093921 TGGTGAAGTTTGACTCGACACA 60.094 45.455 0.00 0.00 32.54 3.72 R
2848 3504 2.546778 TGGTGAAGTTTGACTCGACAC 58.453 47.619 0.00 0.00 0.00 3.67 R
3502 4353 4.159506 AGTGTCTCTGGAATCTACAGAAGC 59.840 45.833 0.00 0.00 43.74 3.86 R
5009 7804 6.399743 AGCAAAAATATGTGCAATCATGACA 58.600 32.000 0.00 0.00 43.42 3.58 R
5040 7840 4.202182 CCATAAGCATAACAGCATTGCCTT 60.202 41.667 4.70 2.38 37.07 4.35 R
5046 7846 4.443978 ACCTCCATAAGCATAACAGCAT 57.556 40.909 0.00 0.00 36.85 3.79 R
5111 7913 1.002011 GTGACCCCCTCCAAGAAGC 60.002 63.158 0.00 0.00 0.00 3.86 R
5553 8409 3.338249 CACCTAAGCAGTGCAATGTAGT 58.662 45.455 19.20 3.80 0.00 2.73 R
5714 8570 1.671901 TATGCCACCGTCGATGAGCA 61.672 55.000 15.97 15.97 34.28 4.26 R
6483 9361 0.107312 GATGAGCCTGGTGCATCAGT 60.107 55.000 24.96 8.08 44.83 3.41 R
7284 10740 0.456653 CAAAAAGCATCCGCGGAAGG 60.457 55.000 34.66 27.25 45.49 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.516323 AGCAAAAATGCAGGTGAGTTTTT 58.484 34.783 3.41 0.00 34.98 1.94
132 133 7.006509 ACTATAGGCCTAGTTAAATACCGTGA 58.993 38.462 19.33 0.00 0.00 4.35
279 280 2.754472 TCAAGTGATTATCCATCGGCG 58.246 47.619 0.00 0.00 34.08 6.46
321 322 1.153353 ACGAAAGTACGTGGCCAATG 58.847 50.000 7.24 5.69 46.88 2.82
333 334 4.201871 ACGTGGCCAATGTCATAAAATACG 60.202 41.667 7.24 3.67 0.00 3.06
334 335 4.034626 CGTGGCCAATGTCATAAAATACGA 59.965 41.667 7.24 0.00 0.00 3.43
335 336 5.277779 CGTGGCCAATGTCATAAAATACGAT 60.278 40.000 7.24 0.00 0.00 3.73
336 337 6.142817 GTGGCCAATGTCATAAAATACGATC 58.857 40.000 7.24 0.00 0.00 3.69
960 985 1.007387 CGTTTGCTGTTTGCTCCCC 60.007 57.895 0.00 0.00 43.37 4.81
968 993 1.971695 GTTTGCTCCCCTTCCACCG 60.972 63.158 0.00 0.00 0.00 4.94
1026 1051 2.491022 CCTCTTCCTCCGGCGGTAG 61.491 68.421 27.32 20.42 0.00 3.18
1267 1314 1.415659 GCAGCTGAGGTATGGACATCT 59.584 52.381 20.43 0.00 37.28 2.90
1278 1325 2.885135 TGGACATCTTTGGAGCATGT 57.115 45.000 0.00 0.00 33.32 3.21
1336 1386 2.296471 TGAAACCGGAGTCTTGACTCTC 59.704 50.000 24.37 16.29 36.97 3.20
1342 1392 2.817258 CGGAGTCTTGACTCTCTTCTGT 59.183 50.000 24.37 0.00 36.97 3.41
1441 1492 5.761165 CATCAATTCCTGTATGTGATGCA 57.239 39.130 0.00 0.00 39.20 3.96
1443 1494 6.745116 CATCAATTCCTGTATGTGATGCAAT 58.255 36.000 0.00 0.00 39.20 3.56
1622 1674 4.876125 AGATACCATAACATGAGCACGAG 58.124 43.478 0.00 0.00 0.00 4.18
1648 1700 4.440802 GGAGATGCAGGTAAGTGTCACTAG 60.441 50.000 5.77 0.00 0.00 2.57
2072 2659 5.940603 TGTTGCTTGTTTGTTTGATTACG 57.059 34.783 0.00 0.00 0.00 3.18
2279 2884 3.251729 GTCGAATGCCATTGTATGCATCT 59.748 43.478 0.19 0.00 46.97 2.90
2474 3087 1.827789 GCAGGTTCAGGTTGGCACA 60.828 57.895 0.00 0.00 0.00 4.57
2813 3469 8.807948 ACAATTGCAGATAAGGTAAATGTACT 57.192 30.769 5.05 0.00 0.00 2.73
2814 3470 8.893727 ACAATTGCAGATAAGGTAAATGTACTC 58.106 33.333 5.05 0.00 0.00 2.59
2815 3471 8.345565 CAATTGCAGATAAGGTAAATGTACTCC 58.654 37.037 0.00 0.00 0.00 3.85
2816 3472 5.925509 TGCAGATAAGGTAAATGTACTCCC 58.074 41.667 0.00 0.00 0.00 4.30
2817 3473 5.665812 TGCAGATAAGGTAAATGTACTCCCT 59.334 40.000 0.00 0.00 0.00 4.20
2818 3474 6.183360 TGCAGATAAGGTAAATGTACTCCCTC 60.183 42.308 0.00 0.00 0.00 4.30
2819 3475 6.741801 GCAGATAAGGTAAATGTACTCCCTCC 60.742 46.154 0.00 0.00 0.00 4.30
2820 3476 5.539193 AGATAAGGTAAATGTACTCCCTCCG 59.461 44.000 0.00 0.00 0.00 4.63
2821 3477 3.111741 AGGTAAATGTACTCCCTCCGT 57.888 47.619 0.00 0.00 0.00 4.69
2822 3478 3.447950 AGGTAAATGTACTCCCTCCGTT 58.552 45.455 0.00 0.00 0.00 4.44
2823 3479 3.450096 AGGTAAATGTACTCCCTCCGTTC 59.550 47.826 0.00 0.00 0.00 3.95
2824 3480 3.431346 GGTAAATGTACTCCCTCCGTTCC 60.431 52.174 0.00 0.00 0.00 3.62
2825 3481 2.249309 AATGTACTCCCTCCGTTCCT 57.751 50.000 0.00 0.00 0.00 3.36
2826 3482 2.249309 ATGTACTCCCTCCGTTCCTT 57.751 50.000 0.00 0.00 0.00 3.36
2827 3483 2.019807 TGTACTCCCTCCGTTCCTTT 57.980 50.000 0.00 0.00 0.00 3.11
2828 3484 2.332117 TGTACTCCCTCCGTTCCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
2829 3485 2.707257 TGTACTCCCTCCGTTCCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
2830 3486 3.903090 TGTACTCCCTCCGTTCCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
2831 3487 3.413846 ACTCCCTCCGTTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
2832 3488 2.977580 ACTCCCTCCGTTCCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
2833 3489 3.007723 ACTCCCTCCGTTCCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
2834 3490 3.245441 TCCCTCCGTTCCTTTTTACTCT 58.755 45.455 0.00 0.00 0.00 3.24
2835 3491 3.007614 TCCCTCCGTTCCTTTTTACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
2836 3492 2.742589 CCTCCGTTCCTTTTTACTCTGC 59.257 50.000 0.00 0.00 0.00 4.26
2837 3493 3.399330 CTCCGTTCCTTTTTACTCTGCA 58.601 45.455 0.00 0.00 0.00 4.41
2838 3494 4.003648 CTCCGTTCCTTTTTACTCTGCAT 58.996 43.478 0.00 0.00 0.00 3.96
2839 3495 5.155278 TCCGTTCCTTTTTACTCTGCATA 57.845 39.130 0.00 0.00 0.00 3.14
2840 3496 5.741011 TCCGTTCCTTTTTACTCTGCATAT 58.259 37.500 0.00 0.00 0.00 1.78
2841 3497 6.880484 TCCGTTCCTTTTTACTCTGCATATA 58.120 36.000 0.00 0.00 0.00 0.86
2842 3498 7.332557 TCCGTTCCTTTTTACTCTGCATATAA 58.667 34.615 0.00 0.00 0.00 0.98
2843 3499 7.494625 TCCGTTCCTTTTTACTCTGCATATAAG 59.505 37.037 0.00 0.00 0.00 1.73
2844 3500 7.494625 CCGTTCCTTTTTACTCTGCATATAAGA 59.505 37.037 0.00 0.00 0.00 2.10
2845 3501 9.046296 CGTTCCTTTTTACTCTGCATATAAGAT 57.954 33.333 0.00 0.00 0.00 2.40
2853 3509 6.834959 ACTCTGCATATAAGATTTGTGTCG 57.165 37.500 0.00 0.00 0.00 4.35
2854 3510 6.573434 ACTCTGCATATAAGATTTGTGTCGA 58.427 36.000 0.00 0.00 0.00 4.20
2855 3511 6.699204 ACTCTGCATATAAGATTTGTGTCGAG 59.301 38.462 0.00 0.00 0.00 4.04
2856 3512 6.573434 TCTGCATATAAGATTTGTGTCGAGT 58.427 36.000 0.00 0.00 0.00 4.18
2857 3513 6.697455 TCTGCATATAAGATTTGTGTCGAGTC 59.303 38.462 0.00 0.00 0.00 3.36
2858 3514 6.337356 TGCATATAAGATTTGTGTCGAGTCA 58.663 36.000 0.00 0.00 0.00 3.41
2859 3515 6.816140 TGCATATAAGATTTGTGTCGAGTCAA 59.184 34.615 0.00 0.00 0.00 3.18
2860 3516 7.333174 TGCATATAAGATTTGTGTCGAGTCAAA 59.667 33.333 14.42 14.42 37.82 2.69
2861 3517 7.636359 GCATATAAGATTTGTGTCGAGTCAAAC 59.364 37.037 14.37 10.01 36.58 2.93
2862 3518 8.873830 CATATAAGATTTGTGTCGAGTCAAACT 58.126 33.333 14.37 11.49 36.58 2.66
2863 3519 7.730364 ATAAGATTTGTGTCGAGTCAAACTT 57.270 32.000 14.37 17.74 36.58 2.66
2864 3520 5.659048 AGATTTGTGTCGAGTCAAACTTC 57.341 39.130 14.37 10.52 36.58 3.01
2865 3521 5.116180 AGATTTGTGTCGAGTCAAACTTCA 58.884 37.500 14.37 0.00 36.58 3.02
2866 3522 4.593597 TTTGTGTCGAGTCAAACTTCAC 57.406 40.909 9.82 1.43 0.00 3.18
2867 3523 2.546778 TGTGTCGAGTCAAACTTCACC 58.453 47.619 0.00 0.00 0.00 4.02
2868 3524 2.093921 TGTGTCGAGTCAAACTTCACCA 60.094 45.455 0.00 0.00 0.00 4.17
2869 3525 2.933906 GTGTCGAGTCAAACTTCACCAA 59.066 45.455 0.00 0.00 0.00 3.67
2870 3526 2.933906 TGTCGAGTCAAACTTCACCAAC 59.066 45.455 0.00 0.00 0.00 3.77
2871 3527 3.195661 GTCGAGTCAAACTTCACCAACT 58.804 45.455 0.00 0.00 0.00 3.16
2872 3528 3.621715 GTCGAGTCAAACTTCACCAACTT 59.378 43.478 0.00 0.00 0.00 2.66
2873 3529 4.094442 GTCGAGTCAAACTTCACCAACTTT 59.906 41.667 0.00 0.00 0.00 2.66
2874 3530 4.094294 TCGAGTCAAACTTCACCAACTTTG 59.906 41.667 0.00 0.00 0.00 2.77
2875 3531 4.094294 CGAGTCAAACTTCACCAACTTTGA 59.906 41.667 0.00 0.00 31.68 2.69
2876 3532 5.310720 AGTCAAACTTCACCAACTTTGAC 57.689 39.130 12.19 12.19 46.84 3.18
2877 3533 4.421058 GTCAAACTTCACCAACTTTGACC 58.579 43.478 9.86 0.00 43.35 4.02
2878 3534 4.082463 GTCAAACTTCACCAACTTTGACCA 60.082 41.667 9.86 0.00 43.35 4.02
2879 3535 4.524714 TCAAACTTCACCAACTTTGACCAA 59.475 37.500 0.00 0.00 29.66 3.67
2880 3536 5.011125 TCAAACTTCACCAACTTTGACCAAA 59.989 36.000 0.00 0.00 29.66 3.28
2881 3537 5.675684 AACTTCACCAACTTTGACCAAAT 57.324 34.783 0.00 0.00 0.00 2.32
2882 3538 5.675684 ACTTCACCAACTTTGACCAAATT 57.324 34.783 0.00 0.00 0.00 1.82
2883 3539 6.048732 ACTTCACCAACTTTGACCAAATTT 57.951 33.333 0.00 0.00 0.00 1.82
2884 3540 5.874261 ACTTCACCAACTTTGACCAAATTTG 59.126 36.000 11.40 11.40 39.30 2.32
2885 3541 5.413309 TCACCAACTTTGACCAAATTTGT 57.587 34.783 16.73 5.32 38.49 2.83
2886 3542 6.531503 TCACCAACTTTGACCAAATTTGTA 57.468 33.333 16.73 0.60 38.49 2.41
2887 3543 7.118496 TCACCAACTTTGACCAAATTTGTAT 57.882 32.000 16.73 4.74 38.49 2.29
2888 3544 8.239038 TCACCAACTTTGACCAAATTTGTATA 57.761 30.769 16.73 0.00 38.49 1.47
2889 3545 8.696374 TCACCAACTTTGACCAAATTTGTATAA 58.304 29.630 16.73 5.90 38.49 0.98
2890 3546 9.319143 CACCAACTTTGACCAAATTTGTATAAA 57.681 29.630 16.73 12.29 38.49 1.40
2891 3547 9.892130 ACCAACTTTGACCAAATTTGTATAAAA 57.108 25.926 16.73 9.11 38.49 1.52
2969 3625 8.414629 AATGAATCTAAAGATATCCCTTTGGC 57.585 34.615 0.00 0.00 37.02 4.52
2970 3626 6.306987 TGAATCTAAAGATATCCCTTTGGCC 58.693 40.000 0.00 0.00 37.02 5.36
2971 3627 6.103205 TGAATCTAAAGATATCCCTTTGGCCT 59.897 38.462 3.32 0.00 37.02 5.19
2972 3628 5.994416 TCTAAAGATATCCCTTTGGCCTT 57.006 39.130 3.32 0.00 37.02 4.35
2973 3629 5.694995 TCTAAAGATATCCCTTTGGCCTTG 58.305 41.667 3.32 0.00 37.02 3.61
2974 3630 4.337264 AAAGATATCCCTTTGGCCTTGT 57.663 40.909 3.32 0.00 35.26 3.16
2975 3631 5.466127 AAAGATATCCCTTTGGCCTTGTA 57.534 39.130 3.32 0.00 35.26 2.41
2976 3632 5.466127 AAGATATCCCTTTGGCCTTGTAA 57.534 39.130 3.32 0.00 0.00 2.41
2977 3633 5.466127 AGATATCCCTTTGGCCTTGTAAA 57.534 39.130 3.32 0.00 0.00 2.01
2978 3634 6.030727 AGATATCCCTTTGGCCTTGTAAAT 57.969 37.500 3.32 0.00 0.00 1.40
2979 3635 5.835280 AGATATCCCTTTGGCCTTGTAAATG 59.165 40.000 3.32 0.00 0.00 2.32
2980 3636 3.252554 TCCCTTTGGCCTTGTAAATGT 57.747 42.857 3.32 0.00 0.00 2.71
2981 3637 3.582164 TCCCTTTGGCCTTGTAAATGTT 58.418 40.909 3.32 0.00 0.00 2.71
2982 3638 3.323403 TCCCTTTGGCCTTGTAAATGTTG 59.677 43.478 3.32 0.00 0.00 3.33
2983 3639 3.323403 CCCTTTGGCCTTGTAAATGTTGA 59.677 43.478 3.32 0.00 0.00 3.18
2984 3640 4.020307 CCCTTTGGCCTTGTAAATGTTGAT 60.020 41.667 3.32 0.00 0.00 2.57
2985 3641 5.186797 CCCTTTGGCCTTGTAAATGTTGATA 59.813 40.000 3.32 0.00 0.00 2.15
2986 3642 6.099341 CCTTTGGCCTTGTAAATGTTGATAC 58.901 40.000 3.32 0.00 0.00 2.24
2987 3643 6.071391 CCTTTGGCCTTGTAAATGTTGATACT 60.071 38.462 3.32 0.00 0.00 2.12
2988 3644 6.909550 TTGGCCTTGTAAATGTTGATACTT 57.090 33.333 3.32 0.00 0.00 2.24
2989 3645 6.909550 TGGCCTTGTAAATGTTGATACTTT 57.090 33.333 3.32 0.00 0.00 2.66
2990 3646 7.296628 TGGCCTTGTAAATGTTGATACTTTT 57.703 32.000 3.32 0.00 36.15 2.27
2991 3647 7.731054 TGGCCTTGTAAATGTTGATACTTTTT 58.269 30.769 3.32 0.00 34.56 1.94
3035 3691 9.832445 AGTAAAGATACTTTGACTTCAGACAAA 57.168 29.630 6.95 4.72 39.36 2.83
3038 3694 8.738645 AAGATACTTTGACTTCAGACAAAAGT 57.261 30.769 6.05 4.69 38.68 2.66
3039 3695 8.738645 AGATACTTTGACTTCAGACAAAAGTT 57.261 30.769 4.61 0.00 38.68 2.66
3040 3696 9.832445 AGATACTTTGACTTCAGACAAAAGTTA 57.168 29.630 4.61 0.34 38.68 2.24
3045 3701 9.334693 CTTTGACTTCAGACAAAAGTTATATGC 57.665 33.333 6.05 0.00 38.68 3.14
3046 3702 7.977789 TGACTTCAGACAAAAGTTATATGCA 57.022 32.000 0.00 0.00 37.10 3.96
3047 3703 8.032952 TGACTTCAGACAAAAGTTATATGCAG 57.967 34.615 0.00 0.00 37.10 4.41
3048 3704 7.877612 TGACTTCAGACAAAAGTTATATGCAGA 59.122 33.333 0.00 0.00 37.10 4.26
3049 3705 8.034058 ACTTCAGACAAAAGTTATATGCAGAC 57.966 34.615 0.00 0.00 33.19 3.51
3050 3706 7.880195 ACTTCAGACAAAAGTTATATGCAGACT 59.120 33.333 0.00 0.00 33.19 3.24
3051 3707 9.371136 CTTCAGACAAAAGTTATATGCAGACTA 57.629 33.333 0.00 0.00 0.00 2.59
3052 3708 9.719355 TTCAGACAAAAGTTATATGCAGACTAA 57.281 29.630 0.00 0.00 0.00 2.24
3053 3709 9.719355 TCAGACAAAAGTTATATGCAGACTAAA 57.281 29.630 0.00 0.00 0.00 1.85
3062 3718 8.665685 AGTTATATGCAGACTAAAAAGAAACGG 58.334 33.333 0.00 0.00 0.00 4.44
3063 3719 8.662141 GTTATATGCAGACTAAAAAGAAACGGA 58.338 33.333 0.00 0.00 0.00 4.69
3064 3720 5.613358 ATGCAGACTAAAAAGAAACGGAG 57.387 39.130 0.00 0.00 0.00 4.63
3065 3721 3.813166 TGCAGACTAAAAAGAAACGGAGG 59.187 43.478 0.00 0.00 0.00 4.30
3066 3722 3.188667 GCAGACTAAAAAGAAACGGAGGG 59.811 47.826 0.00 0.00 0.00 4.30
3067 3723 4.638304 CAGACTAAAAAGAAACGGAGGGA 58.362 43.478 0.00 0.00 0.00 4.20
4975 7770 6.783708 AATCTCCTTTGTTTTTGGTGTACA 57.216 33.333 0.00 0.00 0.00 2.90
5009 7804 9.307121 CAAATGAGTAATCGACTATTGAAGAGT 57.693 33.333 0.00 0.00 39.06 3.24
5044 7844 8.663911 TGCACATATTTTTGCTTTATAAAAGGC 58.336 29.630 0.00 1.19 39.62 4.35
5527 8383 7.911205 CCATGCAAATGCGATGAATAAAATTTT 59.089 29.630 8.75 8.75 45.83 1.82
5654 8510 2.044650 CAGCTCCATGGTGGTGGG 60.045 66.667 29.73 12.23 39.03 4.61
5714 8570 0.517316 GCGAAATCCGAGTTGCAACT 59.483 50.000 31.57 31.57 43.16 3.16
5775 8634 4.429854 AGCAGAGGAGAAGTGAGTTTTT 57.570 40.909 0.00 0.00 0.00 1.94
5790 8649 2.264461 TTTTTCGCCATCGCCAGCA 61.264 52.632 0.00 0.00 35.26 4.41
5810 8669 1.218316 CAGGGTCGTACTTGAGGCC 59.782 63.158 0.00 0.00 0.00 5.19
5833 8692 6.749118 GCCTATGTTGAATTTTGTCACTCATC 59.251 38.462 0.00 0.00 0.00 2.92
5857 8716 8.931385 TCTAACCGAAATATAGTTAACACACC 57.069 34.615 8.61 0.00 0.00 4.16
5883 8742 1.227943 GTCACTGGTGAGCCTTGCA 60.228 57.895 3.47 0.00 40.75 4.08
5897 8756 0.796312 CTTGCATACGCTTTGACCGT 59.204 50.000 0.00 0.00 42.26 4.83
5947 8806 2.563702 CCATAATTGGGCAATGGCAAC 58.436 47.619 9.51 0.00 43.71 4.17
5980 8839 4.816392 TCGCATCTAGCAAAGAACTTACA 58.184 39.130 0.00 0.00 46.13 2.41
5988 8847 7.732996 TCTAGCAAAGAACTTACAAGTAGGTT 58.267 34.615 7.35 7.35 38.57 3.50
5989 8848 8.863086 TCTAGCAAAGAACTTACAAGTAGGTTA 58.137 33.333 7.58 0.00 38.57 2.85
5998 8857 8.557304 AACTTACAAGTAGGTTATAGGGCATA 57.443 34.615 6.01 0.00 38.57 3.14
6012 8871 3.658725 AGGGCATAAGTGTCTAGTCCAT 58.341 45.455 0.00 0.00 0.00 3.41
6179 9048 1.026182 TGGCTCGCAACTAGCAATGG 61.026 55.000 0.00 0.00 46.13 3.16
6187 9056 3.684788 CGCAACTAGCAATGGACTTAACT 59.315 43.478 0.00 0.00 46.13 2.24
6254 9126 2.288458 GTCGTCAGAGCTAAGCGATACT 59.712 50.000 5.65 0.00 34.10 2.12
6302 9174 4.096984 GCATACAAGGATTTGAAGTCTGGG 59.903 45.833 0.00 0.00 37.73 4.45
6390 9268 0.179145 CTACCGTTACCGTGAGCTGG 60.179 60.000 0.00 0.00 0.00 4.85
6408 9286 2.815503 CTGGTTCAGCATGTCATTGTCA 59.184 45.455 0.00 0.00 37.40 3.58
6483 9361 2.343484 ACATCTCGAGACGGACCATA 57.657 50.000 19.30 0.00 0.00 2.74
6588 9468 2.421424 GCAAGATCTACCTGCAAACCAG 59.579 50.000 12.08 0.00 41.41 4.00
6616 9496 1.296715 CTGCCGTCTACCTTTGCCT 59.703 57.895 0.00 0.00 0.00 4.75
6621 9865 2.376109 CCGTCTACCTTTGCCTCTCTA 58.624 52.381 0.00 0.00 0.00 2.43
6622 9866 2.959707 CCGTCTACCTTTGCCTCTCTAT 59.040 50.000 0.00 0.00 0.00 1.98
6629 9873 8.083462 GTCTACCTTTGCCTCTCTATATACAAC 58.917 40.741 0.00 0.00 0.00 3.32
6639 9883 7.810759 GCCTCTCTATATACAACTTGCTCTAAC 59.189 40.741 0.00 0.00 0.00 2.34
6648 9892 6.107901 ACAACTTGCTCTAACTCTGAATCT 57.892 37.500 0.00 0.00 0.00 2.40
6695 9947 0.399454 AGCTCTGGTGTCTGCACAAT 59.601 50.000 0.12 0.00 46.95 2.71
6757 10107 4.273235 TGGTGATGCTGCGATTTATTACAG 59.727 41.667 0.00 0.00 0.00 2.74
6761 10111 3.160870 GCTGCGATTTATTACAGCGAG 57.839 47.619 0.00 0.00 45.23 5.03
6762 10112 2.660362 GCTGCGATTTATTACAGCGAGC 60.660 50.000 0.00 0.00 45.23 5.03
6763 10113 2.539688 CTGCGATTTATTACAGCGAGCA 59.460 45.455 0.00 0.00 0.00 4.26
6764 10114 3.130633 TGCGATTTATTACAGCGAGCAT 58.869 40.909 0.00 0.00 0.00 3.79
6765 10115 3.059665 TGCGATTTATTACAGCGAGCATG 60.060 43.478 0.00 0.00 0.00 4.06
6766 10116 3.665323 GCGATTTATTACAGCGAGCATGG 60.665 47.826 0.00 0.00 0.00 3.66
6767 10117 3.120546 CGATTTATTACAGCGAGCATGGG 60.121 47.826 0.00 0.00 0.00 4.00
6768 10118 2.254546 TTATTACAGCGAGCATGGGG 57.745 50.000 0.00 0.00 0.00 4.96
6769 10119 0.250295 TATTACAGCGAGCATGGGGC 60.250 55.000 0.00 0.00 45.30 5.80
6770 10120 2.965716 ATTACAGCGAGCATGGGGCC 62.966 60.000 0.00 0.00 46.50 5.80
6779 10129 3.530260 CATGGGGCCGGATGCAAC 61.530 66.667 5.05 0.00 43.89 4.17
6780 10130 4.059304 ATGGGGCCGGATGCAACA 62.059 61.111 5.05 0.00 43.89 3.33
6781 10131 4.738998 TGGGGCCGGATGCAACAG 62.739 66.667 5.05 0.00 43.89 3.16
6784 10134 4.424711 GGCCGGATGCAACAGGGA 62.425 66.667 14.63 0.00 43.89 4.20
6785 10135 3.134127 GCCGGATGCAACAGGGAC 61.134 66.667 14.63 0.00 40.77 4.46
6786 10136 2.350895 CCGGATGCAACAGGGACA 59.649 61.111 5.20 0.00 0.00 4.02
6787 10137 2.040544 CCGGATGCAACAGGGACAC 61.041 63.158 5.20 0.00 0.00 3.67
6788 10138 1.302431 CGGATGCAACAGGGACACA 60.302 57.895 0.00 0.00 0.00 3.72
6789 10139 1.577328 CGGATGCAACAGGGACACAC 61.577 60.000 0.00 0.00 0.00 3.82
6790 10140 1.577328 GGATGCAACAGGGACACACG 61.577 60.000 0.00 0.00 0.00 4.49
6791 10141 0.884704 GATGCAACAGGGACACACGT 60.885 55.000 0.00 0.00 0.00 4.49
6792 10142 0.465460 ATGCAACAGGGACACACGTT 60.465 50.000 0.00 0.00 0.00 3.99
6793 10143 1.092921 TGCAACAGGGACACACGTTC 61.093 55.000 0.00 0.00 0.00 3.95
6794 10144 1.092921 GCAACAGGGACACACGTTCA 61.093 55.000 0.00 0.00 0.00 3.18
6795 10145 1.593196 CAACAGGGACACACGTTCAT 58.407 50.000 0.00 0.00 0.00 2.57
6796 10146 1.264020 CAACAGGGACACACGTTCATG 59.736 52.381 0.00 0.00 38.43 3.07
6797 10147 0.250295 ACAGGGACACACGTTCATGG 60.250 55.000 0.00 0.00 36.70 3.66
6798 10148 1.302511 AGGGACACACGTTCATGGC 60.303 57.895 0.00 0.00 0.00 4.40
6799 10149 2.332654 GGGACACACGTTCATGGCC 61.333 63.158 7.47 7.47 44.10 5.36
6800 10150 1.302511 GGACACACGTTCATGGCCT 60.303 57.895 3.32 0.00 41.28 5.19
6801 10151 1.298859 GGACACACGTTCATGGCCTC 61.299 60.000 3.32 0.00 41.28 4.70
6802 10152 1.298859 GACACACGTTCATGGCCTCC 61.299 60.000 3.32 0.00 0.00 4.30
6803 10153 1.302431 CACACGTTCATGGCCTCCA 60.302 57.895 3.32 0.00 38.19 3.86
6804 10154 0.677731 CACACGTTCATGGCCTCCAT 60.678 55.000 3.32 0.00 46.37 3.41
6811 10161 2.195139 ATGGCCTCCATGCTGCTC 59.805 61.111 3.32 0.00 43.39 4.26
6812 10162 2.686572 ATGGCCTCCATGCTGCTCA 61.687 57.895 3.32 0.00 43.39 4.26
6813 10163 2.516460 GGCCTCCATGCTGCTCAG 60.516 66.667 0.00 0.00 0.00 3.35
7073 10434 2.604686 TTCTCCTCCTGCGTGCCT 60.605 61.111 0.00 0.00 0.00 4.75
7106 10467 2.513895 AACCCGTGTCAGGTTGGG 59.486 61.111 0.00 0.00 45.93 4.12
7130 10500 0.105408 ACGTTGCGTTGTTACCCTCT 59.895 50.000 0.00 0.00 36.35 3.69
7186 10556 2.635714 TCATGAGCATGCTTGATCGTT 58.364 42.857 23.61 0.00 41.23 3.85
7284 10740 3.056328 GGGGTCGCTCTTGGTTGC 61.056 66.667 0.00 0.00 0.00 4.17
7288 10744 1.578206 GGTCGCTCTTGGTTGCCTTC 61.578 60.000 0.00 0.00 0.00 3.46
7291 10747 2.982744 GCTCTTGGTTGCCTTCCGC 61.983 63.158 0.00 0.00 38.31 5.54
7294 10750 4.257654 TTGGTTGCCTTCCGCGGA 62.258 61.111 27.28 27.28 42.08 5.54
7318 10867 3.065648 GCTTTTTGTCGTAGTTTGGTCCA 59.934 43.478 0.00 0.00 0.00 4.02
7324 10873 2.230750 GTCGTAGTTTGGTCCAGTAGCT 59.769 50.000 0.00 0.00 0.00 3.32
7325 10874 3.441572 GTCGTAGTTTGGTCCAGTAGCTA 59.558 47.826 0.00 0.00 0.00 3.32
7326 10875 3.441572 TCGTAGTTTGGTCCAGTAGCTAC 59.558 47.826 16.43 16.43 0.00 3.58
7327 10876 3.730061 CGTAGTTTGGTCCAGTAGCTACG 60.730 52.174 19.30 19.30 42.27 3.51
7328 10877 1.549170 AGTTTGGTCCAGTAGCTACGG 59.451 52.381 21.54 21.54 0.00 4.02
7329 10878 0.248289 TTTGGTCCAGTAGCTACGGC 59.752 55.000 22.31 18.04 39.06 5.68
7330 10879 0.901114 TTGGTCCAGTAGCTACGGCA 60.901 55.000 22.31 15.60 41.70 5.69
7333 10882 1.035932 GTCCAGTAGCTACGGCAGGA 61.036 60.000 22.31 20.92 41.70 3.86
7336 10885 1.032794 CAGTAGCTACGGCAGGATGA 58.967 55.000 17.99 0.00 39.69 2.92
7340 10889 0.687757 AGCTACGGCAGGATGAAGGA 60.688 55.000 0.00 0.00 39.69 3.36
7341 10890 0.394565 GCTACGGCAGGATGAAGGAT 59.605 55.000 0.00 0.00 39.69 3.24
7346 10895 1.813092 CGGCAGGATGAAGGATGAAGG 60.813 57.143 0.00 0.00 39.69 3.46
7354 10903 3.645268 AAGGATGAAGGCACGCCCC 62.645 63.158 3.95 0.00 36.58 5.80
7365 10914 4.033776 ACGCCCCAGGTCACCATG 62.034 66.667 0.00 0.00 0.00 3.66
7366 10915 4.033776 CGCCCCAGGTCACCATGT 62.034 66.667 0.00 0.00 0.00 3.21
7367 10916 2.665089 CGCCCCAGGTCACCATGTA 61.665 63.158 0.00 0.00 0.00 2.29
7368 10917 1.224592 GCCCCAGGTCACCATGTAG 59.775 63.158 0.00 0.00 0.00 2.74
7369 10918 1.224592 CCCCAGGTCACCATGTAGC 59.775 63.158 0.00 0.00 0.00 3.58
7370 10919 1.274703 CCCCAGGTCACCATGTAGCT 61.275 60.000 0.00 0.00 0.00 3.32
7371 10920 1.496060 CCCAGGTCACCATGTAGCTA 58.504 55.000 0.00 0.00 0.00 3.32
7372 10921 1.139058 CCCAGGTCACCATGTAGCTAC 59.861 57.143 17.30 17.30 0.00 3.58
7373 10922 1.831106 CCAGGTCACCATGTAGCTACA 59.169 52.381 27.91 27.91 40.98 2.74
7401 10950 2.729028 AGCAAATTATACCCACGCCT 57.271 45.000 0.00 0.00 0.00 5.52
7402 10951 2.572290 AGCAAATTATACCCACGCCTC 58.428 47.619 0.00 0.00 0.00 4.70
7405 10954 2.878406 CAAATTATACCCACGCCTCAGG 59.122 50.000 0.00 0.00 0.00 3.86
7429 10978 0.679640 TTACGCTGCCCCTGATTTGG 60.680 55.000 0.00 0.00 0.00 3.28
7431 10980 1.978617 CGCTGCCCCTGATTTGGTT 60.979 57.895 0.00 0.00 0.00 3.67
7432 10981 1.593265 GCTGCCCCTGATTTGGTTG 59.407 57.895 0.00 0.00 0.00 3.77
7443 10992 2.294233 TGATTTGGTTGCTCTGCTCAAC 59.706 45.455 0.00 0.00 42.13 3.18
7510 11059 6.804783 CGGACCGCAAAACTATTTTTCTATTT 59.195 34.615 0.00 0.00 32.27 1.40
7550 11099 7.386299 AGTTTAGTAAGCAGTCTGAAATGTCTG 59.614 37.037 3.32 0.00 0.00 3.51
7585 11135 7.772166 TCACTACAAATAATCGTGATCTCACT 58.228 34.615 8.57 0.00 44.34 3.41
7598 11149 9.853555 ATCGTGATCTCACTCAAATTATCTATC 57.146 33.333 8.57 0.00 44.34 2.08
7609 11160 9.941325 ACTCAAATTATCTATCAATCAGCCTAG 57.059 33.333 0.00 0.00 0.00 3.02
7668 11219 6.049955 TCTCTATTTACCCCACAAGTTCAG 57.950 41.667 0.00 0.00 0.00 3.02
7681 11232 5.232838 CCACAAGTTCAGAAAAATTGCTCAC 59.767 40.000 0.00 0.00 0.00 3.51
7688 11239 8.295288 AGTTCAGAAAAATTGCTCACAGAATAG 58.705 33.333 0.00 0.00 0.00 1.73
7709 11260 9.334693 GAATAGACAAACATTGTTGAGATGAAC 57.665 33.333 2.13 0.00 45.52 3.18
7718 11270 8.801715 ACATTGTTGAGATGAACAAATAACAC 57.198 30.769 1.78 0.00 46.22 3.32
7732 11284 9.631639 GAACAAATAACACAAATTAACTTGCAC 57.368 29.630 0.00 0.00 0.00 4.57
7753 11305 4.331992 CACTAGTGAAATGAGGACATGCAG 59.668 45.833 18.45 0.00 36.79 4.41
7844 11405 2.871633 CCCACAAACATTTTGCAGAACC 59.128 45.455 0.00 0.00 0.00 3.62
7846 11407 4.190772 CCACAAACATTTTGCAGAACCTT 58.809 39.130 0.00 0.00 0.00 3.50
7848 11409 5.220643 CCACAAACATTTTGCAGAACCTTTC 60.221 40.000 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 8.784043 GGCCTATAGTAATGGTGAAACTTATTG 58.216 37.037 0.00 0.00 36.74 1.90
114 115 5.505159 GGCAATTCACGGTATTTAACTAGGC 60.505 44.000 0.00 0.00 0.00 3.93
279 280 6.237490 CGTACTATCGTTGAAGTCAATGGAAC 60.237 42.308 12.21 4.70 41.80 3.62
321 322 5.738370 AGCAAAGCGATCGTATTTTATGAC 58.262 37.500 17.81 5.58 0.00 3.06
407 409 5.308759 GGGGCTACCTATTATTGTGGTTCTA 59.691 44.000 0.00 0.00 35.48 2.10
426 429 1.049402 GAGCTTATTAGTCGGGGGCT 58.951 55.000 0.00 0.00 0.00 5.19
469 472 5.262804 TCATGTTGGATGACCATGATTTCA 58.737 37.500 0.00 0.00 46.34 2.69
898 923 3.998156 GGCCGTCCCTTCTTTTCC 58.002 61.111 0.00 0.00 0.00 3.13
930 955 2.033448 CAAACGCAGCCCTACCCA 59.967 61.111 0.00 0.00 0.00 4.51
931 956 3.440415 GCAAACGCAGCCCTACCC 61.440 66.667 0.00 0.00 0.00 3.69
932 957 2.359975 AGCAAACGCAGCCCTACC 60.360 61.111 0.00 0.00 0.00 3.18
933 958 1.515521 AACAGCAAACGCAGCCCTAC 61.516 55.000 0.00 0.00 0.00 3.18
934 959 0.821711 AAACAGCAAACGCAGCCCTA 60.822 50.000 0.00 0.00 0.00 3.53
935 960 2.127232 AAACAGCAAACGCAGCCCT 61.127 52.632 0.00 0.00 0.00 5.19
936 961 1.950630 CAAACAGCAAACGCAGCCC 60.951 57.895 0.00 0.00 0.00 5.19
937 962 2.588585 GCAAACAGCAAACGCAGCC 61.589 57.895 0.00 0.00 44.79 4.85
938 963 2.923106 GCAAACAGCAAACGCAGC 59.077 55.556 0.00 0.00 44.79 5.25
968 993 1.146263 CCTATTCCCCGACCAGTGC 59.854 63.158 0.00 0.00 0.00 4.40
1026 1051 2.818274 CGGGCGAGGGTTTACTGC 60.818 66.667 0.00 0.00 0.00 4.40
1267 1314 4.686191 AAACCAATTCACATGCTCCAAA 57.314 36.364 0.00 0.00 0.00 3.28
1278 1325 2.760092 GCCCATGCTCTAAACCAATTCA 59.240 45.455 0.00 0.00 33.53 2.57
1336 1386 3.257393 CTCGGACATTTCCTGACAGAAG 58.743 50.000 3.32 0.00 40.23 2.85
1342 1392 1.472878 CTCGACTCGGACATTTCCTGA 59.527 52.381 0.00 0.00 40.23 3.86
1441 1492 6.757897 TCGTCTGCTGGAATCAAATTAATT 57.242 33.333 0.00 0.00 0.00 1.40
1443 1494 6.757897 ATTCGTCTGCTGGAATCAAATTAA 57.242 33.333 0.00 0.00 0.00 1.40
1648 1700 3.126858 TGTCACAACTCACAAGACTTTGC 59.873 43.478 0.00 0.00 37.85 3.68
2045 2632 7.614124 AATCAAACAAACAAGCAACATTCTT 57.386 28.000 0.00 0.00 0.00 2.52
2072 2659 3.665190 AGGTGTGTTAGTGAAGCTAAGC 58.335 45.455 0.00 0.00 40.07 3.09
2474 3087 6.652481 GCAGATGTATGGCAAGACATTATAGT 59.348 38.462 16.67 0.00 38.34 2.12
2809 3465 3.413846 AAAAAGGAACGGAGGGAGTAC 57.586 47.619 0.00 0.00 0.00 2.73
2810 3466 4.162651 AGTAAAAAGGAACGGAGGGAGTA 58.837 43.478 0.00 0.00 0.00 2.59
2811 3467 2.977580 AGTAAAAAGGAACGGAGGGAGT 59.022 45.455 0.00 0.00 0.00 3.85
2812 3468 3.261137 AGAGTAAAAAGGAACGGAGGGAG 59.739 47.826 0.00 0.00 0.00 4.30
2813 3469 3.007614 CAGAGTAAAAAGGAACGGAGGGA 59.992 47.826 0.00 0.00 0.00 4.20
2814 3470 3.335579 CAGAGTAAAAAGGAACGGAGGG 58.664 50.000 0.00 0.00 0.00 4.30
2815 3471 2.742589 GCAGAGTAAAAAGGAACGGAGG 59.257 50.000 0.00 0.00 0.00 4.30
2816 3472 3.399330 TGCAGAGTAAAAAGGAACGGAG 58.601 45.455 0.00 0.00 0.00 4.63
2817 3473 3.478857 TGCAGAGTAAAAAGGAACGGA 57.521 42.857 0.00 0.00 0.00 4.69
2818 3474 7.494625 TCTTATATGCAGAGTAAAAAGGAACGG 59.505 37.037 0.00 0.00 0.00 4.44
2819 3475 8.420374 TCTTATATGCAGAGTAAAAAGGAACG 57.580 34.615 0.00 0.00 0.00 3.95
2827 3483 8.817100 CGACACAAATCTTATATGCAGAGTAAA 58.183 33.333 0.00 0.00 0.00 2.01
2828 3484 8.194769 TCGACACAAATCTTATATGCAGAGTAA 58.805 33.333 0.00 0.00 0.00 2.24
2829 3485 7.712797 TCGACACAAATCTTATATGCAGAGTA 58.287 34.615 0.00 0.00 0.00 2.59
2830 3486 6.573434 TCGACACAAATCTTATATGCAGAGT 58.427 36.000 0.00 0.00 0.00 3.24
2831 3487 6.699204 ACTCGACACAAATCTTATATGCAGAG 59.301 38.462 0.00 0.00 0.00 3.35
2832 3488 6.573434 ACTCGACACAAATCTTATATGCAGA 58.427 36.000 0.00 0.00 0.00 4.26
2833 3489 6.476706 TGACTCGACACAAATCTTATATGCAG 59.523 38.462 0.00 0.00 0.00 4.41
2834 3490 6.337356 TGACTCGACACAAATCTTATATGCA 58.663 36.000 0.00 0.00 0.00 3.96
2835 3491 6.828502 TGACTCGACACAAATCTTATATGC 57.171 37.500 0.00 0.00 0.00 3.14
2836 3492 8.873830 AGTTTGACTCGACACAAATCTTATATG 58.126 33.333 13.01 0.00 38.09 1.78
2837 3493 9.436957 AAGTTTGACTCGACACAAATCTTATAT 57.563 29.630 13.01 0.00 38.09 0.86
2838 3494 8.827177 AAGTTTGACTCGACACAAATCTTATA 57.173 30.769 13.01 0.00 38.09 0.98
2839 3495 7.441157 TGAAGTTTGACTCGACACAAATCTTAT 59.559 33.333 13.01 2.49 38.09 1.73
2840 3496 6.759356 TGAAGTTTGACTCGACACAAATCTTA 59.241 34.615 13.01 2.11 38.09 2.10
2841 3497 5.584649 TGAAGTTTGACTCGACACAAATCTT 59.415 36.000 13.01 15.25 38.09 2.40
2842 3498 5.006746 GTGAAGTTTGACTCGACACAAATCT 59.993 40.000 13.01 10.10 38.09 2.40
2843 3499 5.198274 GTGAAGTTTGACTCGACACAAATC 58.802 41.667 13.01 9.41 38.09 2.17
2844 3500 4.035208 GGTGAAGTTTGACTCGACACAAAT 59.965 41.667 13.01 2.04 38.09 2.32
2845 3501 3.372822 GGTGAAGTTTGACTCGACACAAA 59.627 43.478 7.79 7.79 32.54 2.83
2846 3502 2.933906 GGTGAAGTTTGACTCGACACAA 59.066 45.455 0.00 0.00 32.54 3.33
2847 3503 2.093921 TGGTGAAGTTTGACTCGACACA 60.094 45.455 0.00 0.00 32.54 3.72
2848 3504 2.546778 TGGTGAAGTTTGACTCGACAC 58.453 47.619 0.00 0.00 0.00 3.67
2849 3505 2.933906 GTTGGTGAAGTTTGACTCGACA 59.066 45.455 0.00 0.00 0.00 4.35
2850 3506 3.195661 AGTTGGTGAAGTTTGACTCGAC 58.804 45.455 0.00 0.00 0.00 4.20
2851 3507 3.536956 AGTTGGTGAAGTTTGACTCGA 57.463 42.857 0.00 0.00 0.00 4.04
2852 3508 4.616181 AAAGTTGGTGAAGTTTGACTCG 57.384 40.909 0.00 0.00 34.10 4.18
2858 3514 5.476091 TTTGGTCAAAGTTGGTGAAGTTT 57.524 34.783 0.00 0.00 35.46 2.66
2859 3515 5.675684 ATTTGGTCAAAGTTGGTGAAGTT 57.324 34.783 2.55 0.00 33.32 2.66
2860 3516 5.675684 AATTTGGTCAAAGTTGGTGAAGT 57.324 34.783 2.55 0.00 33.32 3.01
2861 3517 6.348621 CAAATTTGGTCAAAGTTGGTGAAG 57.651 37.500 21.54 3.10 46.42 3.02
2943 3599 9.520515 GCCAAAGGGATATCTTTAGATTCATTA 57.479 33.333 2.05 0.00 35.44 1.90
2944 3600 7.452813 GGCCAAAGGGATATCTTTAGATTCATT 59.547 37.037 0.00 0.00 35.44 2.57
2945 3601 6.950619 GGCCAAAGGGATATCTTTAGATTCAT 59.049 38.462 0.00 0.00 35.44 2.57
2946 3602 6.103205 AGGCCAAAGGGATATCTTTAGATTCA 59.897 38.462 5.01 0.00 35.44 2.57
2947 3603 6.547402 AGGCCAAAGGGATATCTTTAGATTC 58.453 40.000 5.01 0.00 35.44 2.52
2948 3604 6.536684 AGGCCAAAGGGATATCTTTAGATT 57.463 37.500 5.01 0.00 35.44 2.40
2949 3605 6.126068 ACAAGGCCAAAGGGATATCTTTAGAT 60.126 38.462 5.01 0.00 35.44 1.98
2950 3606 5.193728 ACAAGGCCAAAGGGATATCTTTAGA 59.806 40.000 5.01 0.00 35.44 2.10
2951 3607 5.449553 ACAAGGCCAAAGGGATATCTTTAG 58.550 41.667 5.01 0.00 35.44 1.85
2952 3608 5.466127 ACAAGGCCAAAGGGATATCTTTA 57.534 39.130 5.01 0.00 35.44 1.85
2953 3609 4.337264 ACAAGGCCAAAGGGATATCTTT 57.663 40.909 5.01 0.00 37.44 2.52
2954 3610 5.466127 TTACAAGGCCAAAGGGATATCTT 57.534 39.130 5.01 0.00 35.59 2.40
2955 3611 5.466127 TTTACAAGGCCAAAGGGATATCT 57.534 39.130 5.01 0.00 35.59 1.98
2956 3612 5.598417 ACATTTACAAGGCCAAAGGGATATC 59.402 40.000 5.01 0.00 35.59 1.63
2957 3613 5.528337 ACATTTACAAGGCCAAAGGGATAT 58.472 37.500 5.01 0.00 35.59 1.63
2958 3614 4.941713 ACATTTACAAGGCCAAAGGGATA 58.058 39.130 5.01 0.00 35.59 2.59
2959 3615 3.790126 ACATTTACAAGGCCAAAGGGAT 58.210 40.909 5.01 0.00 35.59 3.85
2960 3616 3.252554 ACATTTACAAGGCCAAAGGGA 57.747 42.857 5.01 0.00 35.59 4.20
2961 3617 3.323403 TCAACATTTACAAGGCCAAAGGG 59.677 43.478 5.01 0.00 37.18 3.95
2962 3618 4.599047 TCAACATTTACAAGGCCAAAGG 57.401 40.909 5.01 0.15 0.00 3.11
2963 3619 6.924111 AGTATCAACATTTACAAGGCCAAAG 58.076 36.000 5.01 0.00 0.00 2.77
2964 3620 6.909550 AGTATCAACATTTACAAGGCCAAA 57.090 33.333 5.01 0.00 0.00 3.28
2965 3621 6.909550 AAGTATCAACATTTACAAGGCCAA 57.090 33.333 5.01 0.00 0.00 4.52
2966 3622 6.909550 AAAGTATCAACATTTACAAGGCCA 57.090 33.333 5.01 0.00 0.00 5.36
3009 3665 9.832445 TTTGTCTGAAGTCAAAGTATCTTTACT 57.168 29.630 0.00 0.00 40.48 2.24
3012 3668 9.178758 ACTTTTGTCTGAAGTCAAAGTATCTTT 57.821 29.630 3.59 0.00 35.29 2.52
3013 3669 8.738645 ACTTTTGTCTGAAGTCAAAGTATCTT 57.261 30.769 3.59 0.00 35.29 2.40
3014 3670 8.738645 AACTTTTGTCTGAAGTCAAAGTATCT 57.261 30.769 3.59 0.00 36.38 1.98
3019 3675 9.334693 GCATATAACTTTTGTCTGAAGTCAAAG 57.665 33.333 3.59 0.00 36.38 2.77
3020 3676 8.845227 TGCATATAACTTTTGTCTGAAGTCAAA 58.155 29.630 0.00 0.00 36.38 2.69
3021 3677 8.389779 TGCATATAACTTTTGTCTGAAGTCAA 57.610 30.769 0.00 0.00 36.38 3.18
3022 3678 7.877612 TCTGCATATAACTTTTGTCTGAAGTCA 59.122 33.333 0.00 0.00 36.38 3.41
3023 3679 8.171840 GTCTGCATATAACTTTTGTCTGAAGTC 58.828 37.037 0.00 0.00 36.38 3.01
3024 3680 7.880195 AGTCTGCATATAACTTTTGTCTGAAGT 59.120 33.333 0.00 0.00 38.92 3.01
3025 3681 8.261492 AGTCTGCATATAACTTTTGTCTGAAG 57.739 34.615 0.00 0.00 0.00 3.02
3026 3682 9.719355 TTAGTCTGCATATAACTTTTGTCTGAA 57.281 29.630 0.00 0.00 0.00 3.02
3027 3683 9.719355 TTTAGTCTGCATATAACTTTTGTCTGA 57.281 29.630 0.00 0.00 0.00 3.27
3036 3692 8.665685 CCGTTTCTTTTTAGTCTGCATATAACT 58.334 33.333 0.00 0.00 0.00 2.24
3037 3693 8.662141 TCCGTTTCTTTTTAGTCTGCATATAAC 58.338 33.333 0.00 0.00 0.00 1.89
3038 3694 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
3039 3695 7.494625 CCTCCGTTTCTTTTTAGTCTGCATATA 59.505 37.037 0.00 0.00 0.00 0.86
3040 3696 6.316390 CCTCCGTTTCTTTTTAGTCTGCATAT 59.684 38.462 0.00 0.00 0.00 1.78
3041 3697 5.642063 CCTCCGTTTCTTTTTAGTCTGCATA 59.358 40.000 0.00 0.00 0.00 3.14
3042 3698 4.455877 CCTCCGTTTCTTTTTAGTCTGCAT 59.544 41.667 0.00 0.00 0.00 3.96
3043 3699 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
3044 3700 3.188667 CCCTCCGTTTCTTTTTAGTCTGC 59.811 47.826 0.00 0.00 0.00 4.26
3045 3701 4.638304 TCCCTCCGTTTCTTTTTAGTCTG 58.362 43.478 0.00 0.00 0.00 3.51
3046 3702 4.347292 ACTCCCTCCGTTTCTTTTTAGTCT 59.653 41.667 0.00 0.00 0.00 3.24
3047 3703 4.639334 ACTCCCTCCGTTTCTTTTTAGTC 58.361 43.478 0.00 0.00 0.00 2.59
3048 3704 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
3049 3705 7.683437 AAATACTCCCTCCGTTTCTTTTTAG 57.317 36.000 0.00 0.00 0.00 1.85
3050 3706 9.743581 ATAAAATACTCCCTCCGTTTCTTTTTA 57.256 29.630 0.00 0.00 0.00 1.52
3051 3707 6.971726 AAAATACTCCCTCCGTTTCTTTTT 57.028 33.333 0.00 0.00 0.00 1.94
3052 3708 8.520351 CAATAAAATACTCCCTCCGTTTCTTTT 58.480 33.333 0.00 0.00 0.00 2.27
3053 3709 7.886446 TCAATAAAATACTCCCTCCGTTTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
3054 3710 7.336176 GTCAATAAAATACTCCCTCCGTTTCTT 59.664 37.037 0.00 0.00 0.00 2.52
3055 3711 6.822170 GTCAATAAAATACTCCCTCCGTTTCT 59.178 38.462 0.00 0.00 0.00 2.52
3056 3712 6.238022 CGTCAATAAAATACTCCCTCCGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
3057 3713 5.583457 CGTCAATAAAATACTCCCTCCGTTT 59.417 40.000 0.00 0.00 0.00 3.60
3058 3714 5.114081 CGTCAATAAAATACTCCCTCCGTT 58.886 41.667 0.00 0.00 0.00 4.44
3059 3715 4.161001 ACGTCAATAAAATACTCCCTCCGT 59.839 41.667 0.00 0.00 0.00 4.69
3060 3716 4.506654 CACGTCAATAAAATACTCCCTCCG 59.493 45.833 0.00 0.00 0.00 4.63
3061 3717 5.667466 TCACGTCAATAAAATACTCCCTCC 58.333 41.667 0.00 0.00 0.00 4.30
3062 3718 7.254795 CCAATCACGTCAATAAAATACTCCCTC 60.255 40.741 0.00 0.00 0.00 4.30
3063 3719 6.542370 CCAATCACGTCAATAAAATACTCCCT 59.458 38.462 0.00 0.00 0.00 4.20
3064 3720 6.725246 CCAATCACGTCAATAAAATACTCCC 58.275 40.000 0.00 0.00 0.00 4.30
3065 3721 6.199393 GCCAATCACGTCAATAAAATACTCC 58.801 40.000 0.00 0.00 0.00 3.85
3066 3722 6.038271 AGGCCAATCACGTCAATAAAATACTC 59.962 38.462 5.01 0.00 0.00 2.59
3067 3723 5.885912 AGGCCAATCACGTCAATAAAATACT 59.114 36.000 5.01 0.00 0.00 2.12
3502 4353 4.159506 AGTGTCTCTGGAATCTACAGAAGC 59.840 45.833 0.00 0.00 43.74 3.86
5009 7804 6.399743 AGCAAAAATATGTGCAATCATGACA 58.600 32.000 0.00 0.00 43.42 3.58
5040 7840 4.202182 CCATAAGCATAACAGCATTGCCTT 60.202 41.667 4.70 2.38 37.07 4.35
5044 7844 4.581824 ACCTCCATAAGCATAACAGCATTG 59.418 41.667 0.00 0.00 36.85 2.82
5046 7846 4.443978 ACCTCCATAAGCATAACAGCAT 57.556 40.909 0.00 0.00 36.85 3.79
5111 7913 1.002011 GTGACCCCCTCCAAGAAGC 60.002 63.158 0.00 0.00 0.00 3.86
5551 8407 4.330074 CACCTAAGCAGTGCAATGTAGTAC 59.670 45.833 19.20 0.00 0.00 2.73
5552 8408 4.503910 CACCTAAGCAGTGCAATGTAGTA 58.496 43.478 19.20 4.89 0.00 1.82
5553 8409 3.338249 CACCTAAGCAGTGCAATGTAGT 58.662 45.455 19.20 3.80 0.00 2.73
5714 8570 1.671901 TATGCCACCGTCGATGAGCA 61.672 55.000 15.97 15.97 34.28 4.26
5790 8649 1.542187 GCCTCAAGTACGACCCTGGT 61.542 60.000 0.00 0.00 0.00 4.00
5833 8692 8.937634 AGGTGTGTTAACTATATTTCGGTTAG 57.062 34.615 7.22 0.00 0.00 2.34
5836 8695 8.625786 AAAAGGTGTGTTAACTATATTTCGGT 57.374 30.769 7.22 0.00 0.00 4.69
5857 8716 1.798813 GCTCACCAGTGACCGTAAAAG 59.201 52.381 0.00 0.00 35.46 2.27
5877 8736 0.096976 CGGTCAAAGCGTATGCAAGG 59.903 55.000 10.11 0.00 46.23 3.61
5897 8756 1.400846 CGCTCGTAGCTCACCTTAAGA 59.599 52.381 3.36 0.00 39.60 2.10
5940 8799 0.682209 GAGCCACATGAGGTTGCCAT 60.682 55.000 11.07 0.00 38.89 4.40
5947 8806 0.390492 TAGATGCGAGCCACATGAGG 59.610 55.000 4.57 4.57 0.00 3.86
5980 8839 6.844917 AGACACTTATGCCCTATAACCTACTT 59.155 38.462 0.00 0.00 0.00 2.24
5988 8847 5.960704 TGGACTAGACACTTATGCCCTATA 58.039 41.667 0.00 0.00 0.00 1.31
5989 8848 4.816126 TGGACTAGACACTTATGCCCTAT 58.184 43.478 0.00 0.00 0.00 2.57
6012 8871 6.151985 ACCTTGCACCACAATATATTCGAAAA 59.848 34.615 0.00 0.00 37.72 2.29
6113 8977 3.625764 GGAAACGAAGGCAGCATGTTATA 59.374 43.478 0.00 0.00 39.31 0.98
6117 8981 0.537143 TGGAAACGAAGGCAGCATGT 60.537 50.000 0.00 0.00 39.31 3.21
6187 9056 8.831297 TGGCAGACCTGAAAATATGGAAACAAA 61.831 37.037 0.47 0.00 40.02 2.83
6302 9174 0.040067 CAAACCTCGCCACAAGCTTC 60.040 55.000 0.00 0.00 40.39 3.86
6390 9268 3.428452 CCCATGACAATGACATGCTGAAC 60.428 47.826 17.75 0.00 42.31 3.18
6408 9286 1.750399 GACGCTTGGATGCACCCAT 60.750 57.895 0.00 0.00 35.87 4.00
6483 9361 0.107312 GATGAGCCTGGTGCATCAGT 60.107 55.000 24.96 8.08 44.83 3.41
6604 9484 8.005388 AGTTGTATATAGAGAGGCAAAGGTAGA 58.995 37.037 0.00 0.00 0.00 2.59
6616 9496 9.854668 AGAGTTAGAGCAAGTTGTATATAGAGA 57.145 33.333 4.48 0.00 0.00 3.10
6621 9865 9.757227 GATTCAGAGTTAGAGCAAGTTGTATAT 57.243 33.333 4.48 0.00 0.00 0.86
6622 9866 8.972127 AGATTCAGAGTTAGAGCAAGTTGTATA 58.028 33.333 4.48 0.00 0.00 1.47
6629 9873 5.350914 CCAACAGATTCAGAGTTAGAGCAAG 59.649 44.000 0.00 0.00 0.00 4.01
6639 9883 2.160417 GGCGAAACCAACAGATTCAGAG 59.840 50.000 0.00 0.00 38.86 3.35
6727 9979 0.594028 CGCAGCATCACCATTCATGC 60.594 55.000 0.00 0.00 44.96 4.06
6762 10112 3.530260 GTTGCATCCGGCCCCATG 61.530 66.667 0.00 0.00 43.89 3.66
6763 10113 4.059304 TGTTGCATCCGGCCCCAT 62.059 61.111 0.00 0.00 43.89 4.00
6764 10114 4.738998 CTGTTGCATCCGGCCCCA 62.739 66.667 0.00 0.00 43.89 4.96
6767 10117 4.424711 TCCCTGTTGCATCCGGCC 62.425 66.667 0.00 0.00 43.89 6.13
6768 10118 3.134127 GTCCCTGTTGCATCCGGC 61.134 66.667 0.00 0.00 45.13 6.13
6769 10119 2.040544 GTGTCCCTGTTGCATCCGG 61.041 63.158 0.00 0.00 0.00 5.14
6770 10120 1.302431 TGTGTCCCTGTTGCATCCG 60.302 57.895 0.00 0.00 0.00 4.18
6771 10121 1.577328 CGTGTGTCCCTGTTGCATCC 61.577 60.000 0.00 0.00 0.00 3.51
6772 10122 0.884704 ACGTGTGTCCCTGTTGCATC 60.885 55.000 0.00 0.00 0.00 3.91
6773 10123 0.465460 AACGTGTGTCCCTGTTGCAT 60.465 50.000 0.00 0.00 0.00 3.96
6774 10124 1.078072 AACGTGTGTCCCTGTTGCA 60.078 52.632 0.00 0.00 0.00 4.08
6775 10125 1.092921 TGAACGTGTGTCCCTGTTGC 61.093 55.000 0.00 0.00 0.00 4.17
6776 10126 1.264020 CATGAACGTGTGTCCCTGTTG 59.736 52.381 0.00 0.00 0.00 3.33
6777 10127 1.593196 CATGAACGTGTGTCCCTGTT 58.407 50.000 0.00 0.00 0.00 3.16
6778 10128 0.250295 CCATGAACGTGTGTCCCTGT 60.250 55.000 0.00 0.00 0.00 4.00
6779 10129 1.577328 GCCATGAACGTGTGTCCCTG 61.577 60.000 0.00 0.00 0.00 4.45
6780 10130 1.302511 GCCATGAACGTGTGTCCCT 60.303 57.895 0.00 0.00 0.00 4.20
6781 10131 2.332654 GGCCATGAACGTGTGTCCC 61.333 63.158 0.00 0.00 0.00 4.46
6782 10132 1.298859 GAGGCCATGAACGTGTGTCC 61.299 60.000 5.01 0.00 0.00 4.02
6783 10133 1.298859 GGAGGCCATGAACGTGTGTC 61.299 60.000 5.01 0.00 0.00 3.67
6784 10134 1.302511 GGAGGCCATGAACGTGTGT 60.303 57.895 5.01 0.00 0.00 3.72
6785 10135 0.677731 ATGGAGGCCATGAACGTGTG 60.678 55.000 5.01 0.00 43.39 3.82
6786 10136 1.685224 ATGGAGGCCATGAACGTGT 59.315 52.632 5.01 0.00 43.39 4.49
6787 10137 4.643795 ATGGAGGCCATGAACGTG 57.356 55.556 5.01 0.00 43.39 4.49
6794 10144 2.195139 GAGCAGCATGGAGGCCAT 59.805 61.111 5.01 0.00 46.37 4.40
6795 10145 3.332385 TGAGCAGCATGGAGGCCA 61.332 61.111 5.01 0.00 38.19 5.36
6796 10146 2.516460 CTGAGCAGCATGGAGGCC 60.516 66.667 0.00 0.00 35.86 5.19
6811 10161 7.435784 CAGTATAAGCATATATCAGAGCTGCTG 59.564 40.741 7.01 0.00 42.05 4.41
6812 10162 7.417683 CCAGTATAAGCATATATCAGAGCTGCT 60.418 40.741 0.00 0.00 44.62 4.24
6813 10163 6.700960 CCAGTATAAGCATATATCAGAGCTGC 59.299 42.308 0.00 0.00 37.41 5.25
6814 10164 7.780064 ACCAGTATAAGCATATATCAGAGCTG 58.220 38.462 0.00 0.00 37.41 4.24
6815 10165 7.969690 ACCAGTATAAGCATATATCAGAGCT 57.030 36.000 0.00 0.00 39.37 4.09
7073 10434 0.833949 GGTTTTTCACCCAAAGCCCA 59.166 50.000 0.00 0.00 40.19 5.36
7096 10457 3.041940 CGTGTCGCCCAACCTGAC 61.042 66.667 0.00 0.00 0.00 3.51
7099 10460 2.590575 CAACGTGTCGCCCAACCT 60.591 61.111 0.00 0.00 0.00 3.50
7106 10467 0.983481 GTAACAACGCAACGTGTCGC 60.983 55.000 9.25 2.54 39.99 5.19
7130 10500 4.958897 CCCCGTCAACGCCCCAAA 62.959 66.667 0.00 0.00 38.18 3.28
7186 10556 0.391597 ACCCGAAGAAGTTTCGAGCA 59.608 50.000 10.54 0.00 43.97 4.26
7262 10632 2.427245 CCAAGAGCGACCCCTCGAT 61.427 63.158 0.00 0.00 42.49 3.59
7284 10740 0.456653 CAAAAAGCATCCGCGGAAGG 60.457 55.000 34.66 27.25 45.49 3.46
7288 10744 1.511887 CGACAAAAAGCATCCGCGG 60.512 57.895 22.12 22.12 45.49 6.46
7291 10747 3.806316 AACTACGACAAAAAGCATCCG 57.194 42.857 0.00 0.00 0.00 4.18
7294 10750 4.261447 GGACCAAACTACGACAAAAAGCAT 60.261 41.667 0.00 0.00 0.00 3.79
7318 10867 1.683917 CTTCATCCTGCCGTAGCTACT 59.316 52.381 21.20 0.00 40.80 2.57
7324 10873 1.788229 TCATCCTTCATCCTGCCGTA 58.212 50.000 0.00 0.00 0.00 4.02
7325 10874 0.911769 TTCATCCTTCATCCTGCCGT 59.088 50.000 0.00 0.00 0.00 5.68
7326 10875 1.590932 CTTCATCCTTCATCCTGCCG 58.409 55.000 0.00 0.00 0.00 5.69
7327 10876 1.978454 CCTTCATCCTTCATCCTGCC 58.022 55.000 0.00 0.00 0.00 4.85
7328 10877 1.316651 GCCTTCATCCTTCATCCTGC 58.683 55.000 0.00 0.00 0.00 4.85
7329 10878 2.295885 GTGCCTTCATCCTTCATCCTG 58.704 52.381 0.00 0.00 0.00 3.86
7330 10879 1.134280 CGTGCCTTCATCCTTCATCCT 60.134 52.381 0.00 0.00 0.00 3.24
7333 10882 0.749454 GGCGTGCCTTCATCCTTCAT 60.749 55.000 2.98 0.00 0.00 2.57
7336 10885 2.044946 GGGCGTGCCTTCATCCTT 60.045 61.111 11.25 0.00 36.10 3.36
7340 10889 4.431131 CCTGGGGCGTGCCTTCAT 62.431 66.667 11.25 0.00 36.10 2.57
7354 10903 2.497675 ACTGTAGCTACATGGTGACCTG 59.502 50.000 26.22 13.70 35.36 4.00
7358 10907 3.366985 CGTTGACTGTAGCTACATGGTGA 60.367 47.826 26.22 13.50 35.36 4.02
7363 10912 3.056821 TGCTTCGTTGACTGTAGCTACAT 60.057 43.478 26.22 16.19 35.36 2.29
7365 10914 2.942710 TGCTTCGTTGACTGTAGCTAC 58.057 47.619 17.30 17.30 33.15 3.58
7366 10915 3.653539 TTGCTTCGTTGACTGTAGCTA 57.346 42.857 0.00 0.00 33.15 3.32
7367 10916 2.526304 TTGCTTCGTTGACTGTAGCT 57.474 45.000 0.00 0.00 33.15 3.32
7368 10917 3.813529 ATTTGCTTCGTTGACTGTAGC 57.186 42.857 0.00 0.00 0.00 3.58
7369 10918 7.399523 GGTATAATTTGCTTCGTTGACTGTAG 58.600 38.462 0.00 0.00 0.00 2.74
7370 10919 6.314400 GGGTATAATTTGCTTCGTTGACTGTA 59.686 38.462 0.00 0.00 0.00 2.74
7371 10920 5.123344 GGGTATAATTTGCTTCGTTGACTGT 59.877 40.000 0.00 0.00 0.00 3.55
7372 10921 5.123186 TGGGTATAATTTGCTTCGTTGACTG 59.877 40.000 0.00 0.00 0.00 3.51
7373 10922 5.123344 GTGGGTATAATTTGCTTCGTTGACT 59.877 40.000 0.00 0.00 0.00 3.41
7401 10950 4.096003 GCAGCGTAAGGCCCCTGA 62.096 66.667 0.00 0.00 45.17 3.86
7411 10960 1.077787 CCAAATCAGGGGCAGCGTA 60.078 57.895 0.00 0.00 0.00 4.42
7414 10963 1.593265 CAACCAAATCAGGGGCAGC 59.407 57.895 0.00 0.00 0.00 5.25
7534 11083 9.846248 ATTAAAATTACAGACATTTCAGACTGC 57.154 29.630 0.00 0.00 35.23 4.40
7585 11135 9.935241 GACTAGGCTGATTGATAGATAATTTGA 57.065 33.333 0.00 0.00 0.00 2.69
7645 11196 5.783360 TCTGAACTTGTGGGGTAAATAGAGA 59.217 40.000 0.00 0.00 0.00 3.10
7668 11219 8.694394 GTTTGTCTATTCTGTGAGCAATTTTTC 58.306 33.333 0.00 0.00 0.00 2.29
7681 11232 8.724229 TCATCTCAACAATGTTTGTCTATTCTG 58.276 33.333 0.00 0.00 44.59 3.02
7688 11239 7.754069 TTTGTTCATCTCAACAATGTTTGTC 57.246 32.000 0.00 0.00 43.97 3.18
7718 11270 9.121517 CTCATTTCACTAGTGCAAGTTAATTTG 57.878 33.333 18.45 7.15 0.00 2.32
7732 11284 4.763073 TCTGCATGTCCTCATTTCACTAG 58.237 43.478 0.00 0.00 31.15 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.