Multiple sequence alignment - TraesCS5D01G507100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G507100 chr5D 100.000 2651 0 0 1 2651 532616921 532614271 0.000000e+00 4896.0
1 TraesCS5D01G507100 chr5D 94.665 806 20 8 869 1652 532651343 532650539 0.000000e+00 1229.0
2 TraesCS5D01G507100 chr5D 83.103 290 31 11 539 822 532651834 532651557 5.670000e-62 248.0
3 TraesCS5D01G507100 chr5D 89.474 133 7 6 1 130 532652054 532651926 7.590000e-36 161.0
4 TraesCS5D01G507100 chr4A 87.228 1378 115 32 1166 2515 639199368 639200712 0.000000e+00 1513.0
5 TraesCS5D01G507100 chr4A 94.891 274 9 3 846 1118 639199008 639199277 8.770000e-115 424.0
6 TraesCS5D01G507100 chr4A 84.502 271 26 12 486 750 639198533 639198793 1.220000e-63 254.0
7 TraesCS5D01G507100 chr4A 88.393 112 10 3 895 1004 639202868 639202978 5.950000e-27 132.0
8 TraesCS5D01G507100 chr4A 80.147 136 7 9 1 121 639197080 639197210 1.690000e-12 84.2
9 TraesCS5D01G507100 chr5B 91.249 857 36 20 843 1665 672627628 672626777 0.000000e+00 1131.0
10 TraesCS5D01G507100 chr5B 83.540 322 20 18 1 299 672629170 672628859 1.210000e-68 270.0
11 TraesCS5D01G507100 chr5B 83.333 234 27 7 526 756 672628422 672628198 3.460000e-49 206.0
12 TraesCS5D01G507100 chr5B 84.302 172 14 6 300 463 672628748 672628582 3.530000e-34 156.0
13 TraesCS5D01G507100 chr5B 90.476 63 5 1 760 822 672627909 672627848 6.080000e-12 82.4
14 TraesCS5D01G507100 chrUn 100.000 434 0 0 1166 1599 476174866 476175299 0.000000e+00 802.0
15 TraesCS5D01G507100 chrUn 81.643 207 37 1 895 1100 37114599 37114393 1.260000e-38 171.0
16 TraesCS5D01G507100 chrUn 81.643 207 37 1 895 1100 247032677 247032883 1.260000e-38 171.0
17 TraesCS5D01G507100 chrUn 81.643 207 37 1 895 1100 300943328 300943122 1.260000e-38 171.0
18 TraesCS5D01G507100 chr3A 81.214 346 65 0 1304 1649 748340659 748341004 2.010000e-71 279.0
19 TraesCS5D01G507100 chr3A 79.839 248 46 2 1404 1649 477319915 477319670 7.540000e-41 178.0
20 TraesCS5D01G507100 chr3A 81.553 206 38 0 895 1100 749876803 749876598 1.260000e-38 171.0
21 TraesCS5D01G507100 chr3B 80.976 205 38 1 895 1098 825849981 825850185 7.590000e-36 161.0
22 TraesCS5D01G507100 chr3D 86.667 60 5 3 2036 2093 498918762 498918704 2.200000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G507100 chr5D 532614271 532616921 2650 True 4896.00 4896 100.000000 1 2651 1 chr5D.!!$R1 2650
1 TraesCS5D01G507100 chr5D 532650539 532652054 1515 True 546.00 1229 89.080667 1 1652 3 chr5D.!!$R2 1651
2 TraesCS5D01G507100 chr4A 639197080 639202978 5898 False 481.44 1513 87.032200 1 2515 5 chr4A.!!$F1 2514
3 TraesCS5D01G507100 chr5B 672626777 672629170 2393 True 369.08 1131 86.580000 1 1665 5 chr5B.!!$R1 1664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 2122 0.108377 ATGCATTGCCATGTGCTGTG 60.108 50.0 6.12 7.1 41.78 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 4205 0.036388 TCAAATCAGTCTGGCCGGAC 60.036 55.0 33.77 33.77 36.56 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 117 3.125316 GGATCTGTCACGTGATGGAAAAC 59.875 47.826 23.12 15.81 0.00 2.43
131 147 5.499139 TGCTTGTTGTTTTGTCCTTCTAG 57.501 39.130 0.00 0.00 0.00 2.43
132 148 4.947388 TGCTTGTTGTTTTGTCCTTCTAGT 59.053 37.500 0.00 0.00 0.00 2.57
133 149 5.163663 TGCTTGTTGTTTTGTCCTTCTAGTG 60.164 40.000 0.00 0.00 0.00 2.74
135 151 3.630312 TGTTGTTTTGTCCTTCTAGTGGC 59.370 43.478 0.00 0.00 0.00 5.01
137 153 1.804748 GTTTTGTCCTTCTAGTGGCGG 59.195 52.381 0.00 0.00 0.00 6.13
139 155 1.568504 TTGTCCTTCTAGTGGCGGAT 58.431 50.000 0.00 0.00 0.00 4.18
140 156 2.447408 TGTCCTTCTAGTGGCGGATA 57.553 50.000 0.00 0.00 0.00 2.59
142 158 4.108501 TGTCCTTCTAGTGGCGGATATA 57.891 45.455 0.00 0.00 0.00 0.86
143 159 4.476297 TGTCCTTCTAGTGGCGGATATAA 58.524 43.478 0.00 0.00 0.00 0.98
144 160 4.897076 TGTCCTTCTAGTGGCGGATATAAA 59.103 41.667 0.00 0.00 0.00 1.40
145 161 5.542635 TGTCCTTCTAGTGGCGGATATAAAT 59.457 40.000 0.00 0.00 0.00 1.40
146 162 6.722590 TGTCCTTCTAGTGGCGGATATAAATA 59.277 38.462 0.00 0.00 0.00 1.40
150 187 8.915036 CCTTCTAGTGGCGGATATAAATATACT 58.085 37.037 0.00 0.00 0.00 2.12
157 194 7.504911 GTGGCGGATATAAATATACTCCCTCTA 59.495 40.741 0.00 0.00 29.15 2.43
161 198 9.069082 CGGATATAAATATACTCCCTCTACCAG 57.931 40.741 0.00 0.00 0.00 4.00
184 221 6.425114 CAGTTTTTGACAGTGCTGTATAGTCT 59.575 38.462 4.68 0.00 45.05 3.24
213 250 7.995463 TTTGCCAAAATTTGTACTACAAGAC 57.005 32.000 4.92 0.00 39.53 3.01
260 297 4.773013 TGGGGAAAACGTAGGATTCATAC 58.227 43.478 0.00 0.00 0.00 2.39
264 301 4.743644 GGAAAACGTAGGATTCATACTCCG 59.256 45.833 6.88 0.00 37.88 4.63
272 309 7.437267 ACGTAGGATTCATACTCCGTAAATTTG 59.563 37.037 0.00 0.00 37.88 2.32
276 313 7.931948 AGGATTCATACTCCGTAAATTTGTAGG 59.068 37.037 0.00 1.66 37.88 3.18
277 314 7.172703 GGATTCATACTCCGTAAATTTGTAGGG 59.827 40.741 0.00 0.00 0.00 3.53
360 511 7.732222 AGAAGATAGACCAAGTGATCTTTCT 57.268 36.000 0.00 0.00 38.46 2.52
361 512 8.144862 AGAAGATAGACCAAGTGATCTTTCTT 57.855 34.615 7.80 7.80 42.40 2.52
362 513 8.601546 AGAAGATAGACCAAGTGATCTTTCTTT 58.398 33.333 9.07 0.04 40.87 2.52
363 514 9.877178 GAAGATAGACCAAGTGATCTTTCTTTA 57.123 33.333 9.07 0.00 40.87 1.85
372 523 9.341899 CCAAGTGATCTTTCTTTAATTAAACGG 57.658 33.333 6.54 0.00 0.00 4.44
463 620 3.617706 TCAGCGTACTTGTTTCGTTTTGA 59.382 39.130 0.00 0.00 0.00 2.69
464 621 3.717404 CAGCGTACTTGTTTCGTTTTGAC 59.283 43.478 0.00 0.00 0.00 3.18
467 624 4.492895 GCGTACTTGTTTCGTTTTGACTGA 60.493 41.667 0.00 0.00 0.00 3.41
470 627 3.754323 ACTTGTTTCGTTTTGACTGACCA 59.246 39.130 0.00 0.00 0.00 4.02
472 629 3.601435 TGTTTCGTTTTGACTGACCAGA 58.399 40.909 3.76 0.00 0.00 3.86
479 653 2.636647 TTGACTGACCAGATGTTGCA 57.363 45.000 3.76 0.00 0.00 4.08
486 660 4.275936 ACTGACCAGATGTTGCAAAGTAAC 59.724 41.667 0.00 0.00 0.00 2.50
487 661 4.203226 TGACCAGATGTTGCAAAGTAACA 58.797 39.130 0.00 3.29 41.72 2.41
488 662 4.036262 TGACCAGATGTTGCAAAGTAACAC 59.964 41.667 0.00 0.00 40.47 3.32
509 1964 4.440758 CACAAGTTTTGAGTAAATGGCGTG 59.559 41.667 0.00 0.00 0.00 5.34
511 1966 2.030274 AGTTTTGAGTAAATGGCGTGCC 60.030 45.455 3.30 3.30 0.00 5.01
512 1967 0.519519 TTTGAGTAAATGGCGTGCCG 59.480 50.000 6.37 0.00 39.42 5.69
523 1978 3.678332 CGTGCCGCGTGCGTATAG 61.678 66.667 13.70 0.00 45.60 1.31
524 1979 2.278336 GTGCCGCGTGCGTATAGA 60.278 61.111 13.70 0.00 45.60 1.98
525 1980 2.278336 TGCCGCGTGCGTATAGAC 60.278 61.111 13.70 0.00 45.60 2.59
526 1981 2.025727 GCCGCGTGCGTATAGACT 59.974 61.111 13.70 0.00 37.81 3.24
527 1982 1.280746 GCCGCGTGCGTATAGACTA 59.719 57.895 13.70 0.00 37.81 2.59
528 1983 0.109873 GCCGCGTGCGTATAGACTAT 60.110 55.000 13.70 0.00 37.81 2.12
529 1984 1.129251 GCCGCGTGCGTATAGACTATA 59.871 52.381 13.70 0.00 37.81 1.31
530 1985 2.787041 GCCGCGTGCGTATAGACTATAG 60.787 54.545 13.70 0.00 37.81 1.31
531 1986 2.414481 CCGCGTGCGTATAGACTATAGT 59.586 50.000 13.70 4.68 37.81 2.12
532 1987 3.614176 CCGCGTGCGTATAGACTATAGTA 59.386 47.826 13.70 0.00 37.81 1.82
533 1988 4.269603 CCGCGTGCGTATAGACTATAGTAT 59.730 45.833 13.70 5.15 37.81 2.12
534 1989 5.460091 CCGCGTGCGTATAGACTATAGTATA 59.540 44.000 13.70 9.56 37.81 1.47
535 1990 6.343265 CGCGTGCGTATAGACTATAGTATAC 58.657 44.000 9.35 11.42 34.35 1.47
536 1991 6.020360 CGCGTGCGTATAGACTATAGTATACA 60.020 42.308 19.11 4.44 33.43 2.29
537 1992 7.336232 GCGTGCGTATAGACTATAGTATACAG 58.664 42.308 19.11 14.40 33.43 2.74
564 2047 1.060553 CCCACGTTCGTTCGATCAATG 59.939 52.381 8.65 0.00 34.70 2.82
565 2048 1.989864 CCACGTTCGTTCGATCAATGA 59.010 47.619 8.65 0.00 34.70 2.57
568 2051 4.074949 CACGTTCGTTCGATCAATGAAAG 58.925 43.478 16.37 16.37 40.92 2.62
573 2057 6.030385 CGTTCGTTCGATCAATGAAAGAAAAG 59.970 38.462 14.47 8.52 42.51 2.27
577 2061 6.517714 CGTTCGATCAATGAAAGAAAAGAGTG 59.482 38.462 5.56 0.00 0.00 3.51
615 2099 1.277273 CAGAGGCATCTTCCACAGTGA 59.723 52.381 0.00 0.00 31.64 3.41
616 2100 1.554160 AGAGGCATCTTCCACAGTGAG 59.446 52.381 0.62 0.00 28.57 3.51
617 2101 1.277557 GAGGCATCTTCCACAGTGAGT 59.722 52.381 0.62 0.00 0.00 3.41
618 2102 5.190997 AGAGGCATCTTCCACAGTGAGTG 62.191 52.174 0.62 0.00 39.39 3.51
638 2122 0.108377 ATGCATTGCCATGTGCTGTG 60.108 50.000 6.12 7.10 41.78 3.66
639 2123 1.290955 GCATTGCCATGTGCTGTGT 59.709 52.632 0.00 0.00 42.00 3.72
640 2124 1.011968 GCATTGCCATGTGCTGTGTG 61.012 55.000 0.00 3.38 42.00 3.82
660 2144 6.316890 TGTGTGCATCGTATAGTACTCACTAA 59.683 38.462 0.00 0.00 40.61 2.24
661 2145 6.851837 GTGTGCATCGTATAGTACTCACTAAG 59.148 42.308 0.00 0.00 40.61 2.18
715 2200 2.517402 TGTTTGTGTCCCGGCCAC 60.517 61.111 13.83 13.83 0.00 5.01
791 2597 4.687948 AGAAGAATAATGTGCCGATCATCG 59.312 41.667 0.00 0.00 40.07 3.84
792 2598 3.995199 AGAATAATGTGCCGATCATCGT 58.005 40.909 6.25 0.00 38.40 3.73
810 2616 3.521560 TCGTTGATGCAGTGGATAAGAC 58.478 45.455 0.00 0.00 0.00 3.01
816 2622 5.748402 TGATGCAGTGGATAAGACTGAAAT 58.252 37.500 0.00 0.00 43.04 2.17
818 2624 7.337938 TGATGCAGTGGATAAGACTGAAATAA 58.662 34.615 0.00 0.00 43.04 1.40
820 2626 7.792374 TGCAGTGGATAAGACTGAAATAATC 57.208 36.000 0.00 0.00 43.04 1.75
821 2627 7.568349 TGCAGTGGATAAGACTGAAATAATCT 58.432 34.615 0.00 0.00 43.04 2.40
838 2661 9.106070 GAAATAATCTACTGTATTTTGGTCCGT 57.894 33.333 0.00 0.00 31.60 4.69
841 2664 9.706691 ATAATCTACTGTATTTTGGTCCGTATG 57.293 33.333 0.00 0.00 0.00 2.39
842 2665 6.778834 TCTACTGTATTTTGGTCCGTATGA 57.221 37.500 0.00 0.00 0.00 2.15
843 2666 7.356089 TCTACTGTATTTTGGTCCGTATGAT 57.644 36.000 0.00 0.00 0.00 2.45
860 2864 9.250246 TCCGTATGATGATATTTACTGACCATA 57.750 33.333 0.00 0.00 0.00 2.74
1084 3089 1.517242 CTACGGCCCTACCTACTACG 58.483 60.000 0.00 0.00 35.61 3.51
1124 3158 4.022603 TCTTCTTCATCTCCTCCTCTGTG 58.977 47.826 0.00 0.00 0.00 3.66
1649 3700 2.876091 CGACTTCATCGCCAAGTTCTA 58.124 47.619 0.00 0.00 45.52 2.10
1672 3723 5.613358 AAGAACAGCTGAAAAGGATAACG 57.387 39.130 23.35 0.00 0.00 3.18
1699 3750 6.124340 TCCATGCATCATGTTTTCAGTAGAT 58.876 36.000 0.00 0.00 39.94 1.98
1701 3752 6.262496 CCATGCATCATGTTTTCAGTAGATCT 59.738 38.462 0.00 0.00 39.94 2.75
1716 3767 1.560923 GATCTGTGGATCGTTGGACG 58.439 55.000 0.00 0.00 44.19 4.79
1721 3772 1.666553 TGGATCGTTGGACGTGTGC 60.667 57.895 0.00 0.00 43.14 4.57
1726 3777 1.880796 CGTTGGACGTGTGCTGTCA 60.881 57.895 0.00 0.00 38.10 3.58
1739 3790 2.995939 GTGCTGTCAGTTTGATCATCGA 59.004 45.455 0.00 0.00 0.00 3.59
1743 3794 2.860136 TGTCAGTTTGATCATCGATCGC 59.140 45.455 11.09 0.00 41.51 4.58
1772 3823 0.749818 TCCTTGCTTGTTCGTTGGCA 60.750 50.000 0.00 0.00 0.00 4.92
1795 3846 6.201615 GCATGTCGATTCATCTCATCAGTTAA 59.798 38.462 0.00 0.00 0.00 2.01
1796 3847 7.569043 GCATGTCGATTCATCTCATCAGTTAAG 60.569 40.741 0.00 0.00 0.00 1.85
1797 3848 7.100458 TGTCGATTCATCTCATCAGTTAAGA 57.900 36.000 0.00 0.00 0.00 2.10
1798 3849 7.199078 TGTCGATTCATCTCATCAGTTAAGAG 58.801 38.462 0.00 0.00 0.00 2.85
1799 3850 7.148000 TGTCGATTCATCTCATCAGTTAAGAGT 60.148 37.037 0.00 0.00 0.00 3.24
1800 3851 8.346300 GTCGATTCATCTCATCAGTTAAGAGTA 58.654 37.037 0.00 0.00 0.00 2.59
1814 3865 8.408601 TCAGTTAAGAGTACCGTGGATAATAAC 58.591 37.037 0.00 0.00 0.00 1.89
1835 3886 1.010574 CTCTGCTCGATCGACGGAC 60.011 63.158 15.15 4.77 42.82 4.79
1876 3933 1.767289 CGTATGCATAGTCCCGTCAC 58.233 55.000 6.67 0.00 0.00 3.67
1877 3934 1.337071 CGTATGCATAGTCCCGTCACT 59.663 52.381 6.67 0.00 0.00 3.41
1882 3939 3.296854 TGCATAGTCCCGTCACTATTCT 58.703 45.455 1.63 0.00 37.47 2.40
1892 3949 6.091034 GTCCCGTCACTATTCTTTTTCTCTTC 59.909 42.308 0.00 0.00 0.00 2.87
1893 3950 6.014499 TCCCGTCACTATTCTTTTTCTCTTCT 60.014 38.462 0.00 0.00 0.00 2.85
1894 3951 6.311690 CCCGTCACTATTCTTTTTCTCTTCTC 59.688 42.308 0.00 0.00 0.00 2.87
1895 3952 7.093992 CCGTCACTATTCTTTTTCTCTTCTCT 58.906 38.462 0.00 0.00 0.00 3.10
1896 3953 7.600752 CCGTCACTATTCTTTTTCTCTTCTCTT 59.399 37.037 0.00 0.00 0.00 2.85
1897 3954 8.983724 CGTCACTATTCTTTTTCTCTTCTCTTT 58.016 33.333 0.00 0.00 0.00 2.52
1917 3974 8.919145 TCTCTTTTTCTAATAAAAGGGCAAACA 58.081 29.630 8.48 0.00 42.64 2.83
1920 3977 6.732896 TTTCTAATAAAAGGGCAAACACCA 57.267 33.333 0.00 0.00 0.00 4.17
1925 3982 9.127277 TCTAATAAAAGGGCAAACACCATATAC 57.873 33.333 0.00 0.00 0.00 1.47
1932 3989 4.887655 GGGCAAACACCATATACTAAGCTT 59.112 41.667 3.48 3.48 0.00 3.74
1933 3990 6.059484 GGGCAAACACCATATACTAAGCTTA 58.941 40.000 5.94 5.94 0.00 3.09
1939 3996 7.834881 ACACCATATACTAAGCTTAGCAGTA 57.165 36.000 29.39 19.30 34.09 2.74
1942 3999 8.307483 CACCATATACTAAGCTTAGCAGTACAT 58.693 37.037 29.39 12.24 34.09 2.29
1956 4016 9.162764 CTTAGCAGTACATAAAACACCTTACAT 57.837 33.333 0.00 0.00 0.00 2.29
1959 4019 9.509956 AGCAGTACATAAAACACCTTACATAAA 57.490 29.630 0.00 0.00 0.00 1.40
1960 4020 9.550811 GCAGTACATAAAACACCTTACATAAAC 57.449 33.333 0.00 0.00 0.00 2.01
1963 4023 7.748691 ACATAAAACACCTTACATAAACCGT 57.251 32.000 0.00 0.00 0.00 4.83
1964 4024 7.586747 ACATAAAACACCTTACATAAACCGTG 58.413 34.615 0.00 0.00 0.00 4.94
1965 4025 4.492791 AAACACCTTACATAAACCGTGC 57.507 40.909 0.00 0.00 0.00 5.34
1966 4026 2.429478 ACACCTTACATAAACCGTGCC 58.571 47.619 0.00 0.00 0.00 5.01
1967 4027 1.395608 CACCTTACATAAACCGTGCCG 59.604 52.381 0.00 0.00 0.00 5.69
1998 4058 1.061546 TTTTAGGGTGCGGGAGTCTT 58.938 50.000 0.00 0.00 0.00 3.01
2009 4069 1.472376 CGGGAGTCTTCTTCCTCATGC 60.472 57.143 0.00 0.00 37.20 4.06
2012 4072 3.452627 GGGAGTCTTCTTCCTCATGCTTA 59.547 47.826 0.00 0.00 36.43 3.09
2016 4076 6.305272 AGTCTTCTTCCTCATGCTTATGAA 57.695 37.500 0.00 0.00 0.00 2.57
2028 4088 4.890158 TGCTTATGAACCTCTGTCTTGA 57.110 40.909 0.00 0.00 0.00 3.02
2029 4089 4.569943 TGCTTATGAACCTCTGTCTTGAC 58.430 43.478 0.00 0.00 0.00 3.18
2050 4110 5.217895 ACGAAGTGAACTTGTTGAAACTC 57.782 39.130 0.00 0.00 42.51 3.01
2071 4131 2.158449 CAGAAACTTGTAGAAGCAGCGG 59.842 50.000 0.00 0.00 31.68 5.52
2072 4132 2.143925 GAAACTTGTAGAAGCAGCGGT 58.856 47.619 0.00 0.00 31.68 5.68
2073 4133 1.512926 AACTTGTAGAAGCAGCGGTG 58.487 50.000 10.98 10.98 31.68 4.94
2084 4144 0.384353 GCAGCGGTGAAAAAGTCGTC 60.384 55.000 20.69 0.00 0.00 4.20
2088 4148 1.987770 GCGGTGAAAAAGTCGTCGATA 59.012 47.619 0.00 0.00 0.00 2.92
2091 4151 4.085721 GCGGTGAAAAAGTCGTCGATATAG 60.086 45.833 0.00 0.00 0.00 1.31
2129 4190 0.544697 TGCTATCCCCGAGAAAACCC 59.455 55.000 0.00 0.00 0.00 4.11
2135 4196 2.465813 TCCCCGAGAAAACCCGTATAA 58.534 47.619 0.00 0.00 0.00 0.98
2137 4198 3.135994 CCCCGAGAAAACCCGTATAATG 58.864 50.000 0.00 0.00 0.00 1.90
2139 4200 2.220133 CCGAGAAAACCCGTATAATGCG 59.780 50.000 0.00 0.00 0.00 4.73
2143 4204 1.018910 AAACCCGTATAATGCGCCAC 58.981 50.000 4.18 0.00 0.00 5.01
2144 4205 1.155424 AACCCGTATAATGCGCCACG 61.155 55.000 4.18 6.78 0.00 4.94
2161 4225 1.079127 CGTCCGGCCAGACTGATTT 60.079 57.895 16.98 0.00 34.46 2.17
2188 4252 0.767375 ACAACTCTCACATGCACCCT 59.233 50.000 0.00 0.00 0.00 4.34
2189 4253 1.977854 ACAACTCTCACATGCACCCTA 59.022 47.619 0.00 0.00 0.00 3.53
2202 4266 3.282021 TGCACCCTAATGAAGCTGAATC 58.718 45.455 0.00 0.00 0.00 2.52
2209 4273 2.519771 ATGAAGCTGAATCTGGCCAA 57.480 45.000 7.01 0.00 0.00 4.52
2256 4322 4.314740 AAACCAAGACGCAAAAATGCTA 57.685 36.364 0.00 0.00 0.00 3.49
2261 4327 4.084589 CCAAGACGCAAAAATGCTAAAACC 60.085 41.667 0.00 0.00 0.00 3.27
2264 4330 2.792116 ACGCAAAAATGCTAAAACCACG 59.208 40.909 0.00 0.00 0.00 4.94
2265 4331 2.154772 CGCAAAAATGCTAAAACCACGG 59.845 45.455 0.00 0.00 0.00 4.94
2266 4332 2.478514 GCAAAAATGCTAAAACCACGGG 59.521 45.455 0.00 0.00 0.00 5.28
2267 4333 2.448926 AAAATGCTAAAACCACGGGC 57.551 45.000 0.00 0.00 0.00 6.13
2268 4334 0.606096 AAATGCTAAAACCACGGGCC 59.394 50.000 0.00 0.00 0.00 5.80
2269 4335 0.251608 AATGCTAAAACCACGGGCCT 60.252 50.000 0.84 0.00 0.00 5.19
2270 4336 0.621609 ATGCTAAAACCACGGGCCTA 59.378 50.000 0.84 0.00 0.00 3.93
2271 4337 0.621609 TGCTAAAACCACGGGCCTAT 59.378 50.000 0.84 0.00 0.00 2.57
2272 4338 1.004979 TGCTAAAACCACGGGCCTATT 59.995 47.619 0.84 0.00 0.00 1.73
2273 4339 2.239150 TGCTAAAACCACGGGCCTATTA 59.761 45.455 0.84 0.00 0.00 0.98
2274 4340 2.615447 GCTAAAACCACGGGCCTATTAC 59.385 50.000 0.84 0.00 0.00 1.89
2275 4341 2.883122 AAAACCACGGGCCTATTACA 57.117 45.000 0.84 0.00 0.00 2.41
2276 4342 2.413310 AAACCACGGGCCTATTACAG 57.587 50.000 0.84 0.00 0.00 2.74
2293 4359 5.917545 TTACAGGAGTTTTAGGGTCCTTT 57.082 39.130 0.00 0.00 38.75 3.11
2295 4361 3.720002 ACAGGAGTTTTAGGGTCCTTTCA 59.280 43.478 0.00 0.00 38.75 2.69
2296 4362 4.072839 CAGGAGTTTTAGGGTCCTTTCAC 58.927 47.826 0.00 0.00 38.75 3.18
2307 4373 4.471747 AGGGTCCTTTCACTAATTCTCTCC 59.528 45.833 0.00 0.00 0.00 3.71
2310 4376 5.280011 GGTCCTTTCACTAATTCTCTCCACA 60.280 44.000 0.00 0.00 0.00 4.17
2311 4377 5.639931 GTCCTTTCACTAATTCTCTCCACAC 59.360 44.000 0.00 0.00 0.00 3.82
2312 4378 5.306937 TCCTTTCACTAATTCTCTCCACACA 59.693 40.000 0.00 0.00 0.00 3.72
2314 4380 5.545063 TTCACTAATTCTCTCCACACACA 57.455 39.130 0.00 0.00 0.00 3.72
2318 4384 0.693049 ATTCTCTCCACACACACCCC 59.307 55.000 0.00 0.00 0.00 4.95
2319 4385 0.399949 TTCTCTCCACACACACCCCT 60.400 55.000 0.00 0.00 0.00 4.79
2320 4386 0.832135 TCTCTCCACACACACCCCTC 60.832 60.000 0.00 0.00 0.00 4.30
2321 4387 0.833834 CTCTCCACACACACCCCTCT 60.834 60.000 0.00 0.00 0.00 3.69
2322 4388 1.121407 TCTCCACACACACCCCTCTG 61.121 60.000 0.00 0.00 0.00 3.35
2323 4389 1.074850 TCCACACACACCCCTCTGA 60.075 57.895 0.00 0.00 0.00 3.27
2324 4390 0.692756 TCCACACACACCCCTCTGAA 60.693 55.000 0.00 0.00 0.00 3.02
2327 4393 2.586425 CACACACACCCCTCTGAATTT 58.414 47.619 0.00 0.00 0.00 1.82
2328 4394 2.958355 CACACACACCCCTCTGAATTTT 59.042 45.455 0.00 0.00 0.00 1.82
2329 4395 4.141287 CACACACACCCCTCTGAATTTTA 58.859 43.478 0.00 0.00 0.00 1.52
2335 4411 5.016831 ACACCCCTCTGAATTTTACCAATC 58.983 41.667 0.00 0.00 0.00 2.67
2349 4425 1.069049 ACCAATCACAACTTGCCAAGC 59.931 47.619 3.88 0.00 0.00 4.01
2356 4432 2.545106 CACAACTTGCCAAGCCAAAATC 59.455 45.455 3.88 0.00 0.00 2.17
2357 4433 2.170187 ACAACTTGCCAAGCCAAAATCA 59.830 40.909 3.88 0.00 0.00 2.57
2362 4438 0.109132 GCCAAGCCAAAATCACTCCG 60.109 55.000 0.00 0.00 0.00 4.63
2363 4439 1.247567 CCAAGCCAAAATCACTCCGT 58.752 50.000 0.00 0.00 0.00 4.69
2367 4443 4.261825 CCAAGCCAAAATCACTCCGTAAAA 60.262 41.667 0.00 0.00 0.00 1.52
2368 4444 5.469479 CAAGCCAAAATCACTCCGTAAAAT 58.531 37.500 0.00 0.00 0.00 1.82
2371 4447 4.676986 GCCAAAATCACTCCGTAAAATCCC 60.677 45.833 0.00 0.00 0.00 3.85
2372 4448 4.142249 CCAAAATCACTCCGTAAAATCCCC 60.142 45.833 0.00 0.00 0.00 4.81
2373 4449 4.310022 AAATCACTCCGTAAAATCCCCA 57.690 40.909 0.00 0.00 0.00 4.96
2374 4450 4.519906 AATCACTCCGTAAAATCCCCAT 57.480 40.909 0.00 0.00 0.00 4.00
2376 4452 5.640158 ATCACTCCGTAAAATCCCCATAA 57.360 39.130 0.00 0.00 0.00 1.90
2377 4453 5.438698 TCACTCCGTAAAATCCCCATAAA 57.561 39.130 0.00 0.00 0.00 1.40
2378 4454 5.817784 TCACTCCGTAAAATCCCCATAAAA 58.182 37.500 0.00 0.00 0.00 1.52
2381 4457 7.397761 TCACTCCGTAAAATCCCCATAAAATTT 59.602 33.333 0.00 0.00 0.00 1.82
2382 4458 8.038351 CACTCCGTAAAATCCCCATAAAATTTT 58.962 33.333 8.75 8.75 36.73 1.82
2383 4459 8.038351 ACTCCGTAAAATCCCCATAAAATTTTG 58.962 33.333 13.76 0.00 35.07 2.44
2427 4503 1.893808 CATAGCCACGCCATCCACC 60.894 63.158 0.00 0.00 0.00 4.61
2442 4518 1.375523 CACCCTGTAGGACAACGCC 60.376 63.158 0.00 0.00 39.89 5.68
2448 4524 0.319211 TGTAGGACAACGCCAACGAG 60.319 55.000 0.00 0.00 43.93 4.18
2449 4525 0.038892 GTAGGACAACGCCAACGAGA 60.039 55.000 0.00 0.00 43.93 4.04
2451 4527 1.300697 GGACAACGCCAACGAGACT 60.301 57.895 0.00 0.00 43.93 3.24
2470 4546 6.365518 CGAGACTAACTTGTAGAAGAAAACCC 59.634 42.308 6.63 0.00 32.98 4.11
2471 4547 7.133133 AGACTAACTTGTAGAAGAAAACCCA 57.867 36.000 6.63 0.00 32.98 4.51
2499 4581 1.690219 ATCTGAGGACGCACCATCCC 61.690 60.000 2.21 0.00 42.04 3.85
2515 4597 2.358737 CCCCACACGCCTCTCAAC 60.359 66.667 0.00 0.00 0.00 3.18
2516 4598 2.425592 CCCACACGCCTCTCAACA 59.574 61.111 0.00 0.00 0.00 3.33
2517 4599 1.003355 CCCACACGCCTCTCAACAT 60.003 57.895 0.00 0.00 0.00 2.71
2518 4600 1.300971 CCCACACGCCTCTCAACATG 61.301 60.000 0.00 0.00 0.00 3.21
2519 4601 1.499056 CACACGCCTCTCAACATGC 59.501 57.895 0.00 0.00 0.00 4.06
2523 4605 3.084579 GCCTCTCAACATGCGACG 58.915 61.111 0.00 0.00 0.00 5.12
2524 4606 1.446099 GCCTCTCAACATGCGACGA 60.446 57.895 0.00 0.00 0.00 4.20
2527 4609 0.368227 CTCTCAACATGCGACGAAGC 59.632 55.000 0.00 0.00 37.71 3.86
2528 4610 0.038251 TCTCAACATGCGACGAAGCT 60.038 50.000 0.00 0.00 38.13 3.74
2529 4611 0.368227 CTCAACATGCGACGAAGCTC 59.632 55.000 0.00 0.00 38.13 4.09
2530 4612 1.014044 TCAACATGCGACGAAGCTCC 61.014 55.000 0.00 0.00 38.13 4.70
2531 4613 1.016130 CAACATGCGACGAAGCTCCT 61.016 55.000 0.00 0.00 38.13 3.69
2533 4615 0.737715 ACATGCGACGAAGCTCCTTC 60.738 55.000 0.00 0.00 37.16 3.46
2534 4616 0.737367 CATGCGACGAAGCTCCTTCA 60.737 55.000 0.00 0.00 40.17 3.02
2535 4617 0.037326 ATGCGACGAAGCTCCTTCAA 60.037 50.000 0.00 0.00 40.17 2.69
2536 4618 0.249699 TGCGACGAAGCTCCTTCAAA 60.250 50.000 0.00 0.00 40.17 2.69
2538 4620 1.398578 GCGACGAAGCTCCTTCAAAAC 60.399 52.381 0.00 0.00 40.17 2.43
2542 4624 1.461127 CGAAGCTCCTTCAAAACGAGG 59.539 52.381 5.88 0.00 40.17 4.63
2543 4625 2.767505 GAAGCTCCTTCAAAACGAGGA 58.232 47.619 0.00 0.00 39.95 3.71
2544 4626 2.171341 AGCTCCTTCAAAACGAGGAC 57.829 50.000 0.00 0.00 0.00 3.85
2545 4627 0.790814 GCTCCTTCAAAACGAGGACG 59.209 55.000 0.00 0.00 45.75 4.79
2547 4629 2.329379 CTCCTTCAAAACGAGGACGAG 58.671 52.381 0.00 0.00 42.66 4.18
2548 4630 1.958579 TCCTTCAAAACGAGGACGAGA 59.041 47.619 0.00 0.00 42.66 4.04
2550 4632 1.714460 CTTCAAAACGAGGACGAGACG 59.286 52.381 0.00 0.00 42.66 4.18
2551 4633 0.039798 TCAAAACGAGGACGAGACGG 60.040 55.000 0.00 0.00 42.66 4.79
2553 4635 1.174712 AAAACGAGGACGAGACGGGA 61.175 55.000 0.00 0.00 42.66 5.14
2554 4636 1.174712 AAACGAGGACGAGACGGGAA 61.175 55.000 0.00 0.00 42.66 3.97
2556 4638 1.744368 CGAGGACGAGACGGGAAGA 60.744 63.158 0.00 0.00 42.66 2.87
2557 4639 1.801983 GAGGACGAGACGGGAAGAC 59.198 63.158 0.00 0.00 0.00 3.01
2558 4640 0.677414 GAGGACGAGACGGGAAGACT 60.677 60.000 0.00 0.00 0.00 3.24
2559 4641 0.251253 AGGACGAGACGGGAAGACTT 60.251 55.000 0.00 0.00 0.00 3.01
2561 4643 2.022934 GGACGAGACGGGAAGACTTAT 58.977 52.381 0.00 0.00 0.00 1.73
2563 4645 3.488890 GGACGAGACGGGAAGACTTATTC 60.489 52.174 0.00 0.00 0.00 1.75
2564 4646 2.426381 ACGAGACGGGAAGACTTATTCC 59.574 50.000 0.00 0.00 46.82 3.01
2575 5384 3.270877 AGACTTATTCCATGTTGACGGC 58.729 45.455 0.00 0.00 0.00 5.68
2577 5386 2.276201 CTTATTCCATGTTGACGGCGA 58.724 47.619 16.62 0.00 0.00 5.54
2579 5388 1.299541 ATTCCATGTTGACGGCGATC 58.700 50.000 16.62 8.31 0.00 3.69
2580 5389 0.742990 TTCCATGTTGACGGCGATCC 60.743 55.000 16.62 2.46 0.00 3.36
2581 5390 2.180204 CCATGTTGACGGCGATCCC 61.180 63.158 16.62 0.00 0.00 3.85
2582 5391 1.449423 CATGTTGACGGCGATCCCA 60.449 57.895 16.62 5.13 0.00 4.37
2583 5392 0.815213 CATGTTGACGGCGATCCCAT 60.815 55.000 16.62 7.48 0.00 4.00
2584 5393 0.815213 ATGTTGACGGCGATCCCATG 60.815 55.000 16.62 0.00 0.00 3.66
2585 5394 2.180204 GTTGACGGCGATCCCATGG 61.180 63.158 16.62 4.14 0.00 3.66
2586 5395 4.545706 TGACGGCGATCCCATGGC 62.546 66.667 16.62 0.00 0.00 4.40
2591 5400 4.650377 GCGATCCCATGGCCTCCC 62.650 72.222 6.09 0.00 0.00 4.30
2594 5403 1.152673 GATCCCATGGCCTCCCAAC 60.153 63.158 6.09 0.00 46.14 3.77
2595 5404 2.647003 GATCCCATGGCCTCCCAACC 62.647 65.000 6.09 0.00 46.14 3.77
2596 5405 3.671410 CCCATGGCCTCCCAACCA 61.671 66.667 6.09 0.00 46.14 3.67
2598 5407 1.683365 CCATGGCCTCCCAACCAAG 60.683 63.158 3.32 0.00 46.14 3.61
2599 5408 1.683365 CATGGCCTCCCAACCAAGG 60.683 63.158 3.32 0.00 46.14 3.61
2600 5409 1.856873 ATGGCCTCCCAACCAAGGA 60.857 57.895 3.32 0.00 46.14 3.36
2601 5410 1.224003 ATGGCCTCCCAACCAAGGAT 61.224 55.000 3.32 0.00 46.14 3.24
2604 5413 0.251787 GCCTCCCAACCAAGGATTGT 60.252 55.000 0.00 0.00 46.99 2.71
2607 5416 1.075374 CTCCCAACCAAGGATTGTGGA 59.925 52.381 0.00 3.24 46.99 4.02
2609 5418 2.102578 CCCAACCAAGGATTGTGGATC 58.897 52.381 0.00 0.00 46.99 3.36
2610 5419 2.557229 CCCAACCAAGGATTGTGGATCA 60.557 50.000 0.00 0.00 46.99 2.92
2612 5421 3.577848 CCAACCAAGGATTGTGGATCAAA 59.422 43.478 0.00 0.00 46.99 2.69
2613 5422 4.040217 CCAACCAAGGATTGTGGATCAAAA 59.960 41.667 0.00 0.00 46.99 2.44
2615 5424 5.665916 ACCAAGGATTGTGGATCAAAATC 57.334 39.130 0.00 2.97 46.99 2.17
2618 5427 6.953520 ACCAAGGATTGTGGATCAAAATCTAA 59.046 34.615 9.76 0.00 46.99 2.10
2619 5428 7.620888 ACCAAGGATTGTGGATCAAAATCTAAT 59.379 33.333 9.76 0.00 46.99 1.73
2621 5430 8.910944 CAAGGATTGTGGATCAAAATCTAATCT 58.089 33.333 9.76 0.00 42.34 2.40
2634 5443 9.847224 TCAAAATCTAATCTAAATACCTCACCC 57.153 33.333 0.00 0.00 0.00 4.61
2635 5444 9.067986 CAAAATCTAATCTAAATACCTCACCCC 57.932 37.037 0.00 0.00 0.00 4.95
2636 5445 7.947782 AATCTAATCTAAATACCTCACCCCA 57.052 36.000 0.00 0.00 0.00 4.96
2637 5446 6.742559 TCTAATCTAAATACCTCACCCCAC 57.257 41.667 0.00 0.00 0.00 4.61
2638 5447 4.790718 AATCTAAATACCTCACCCCACC 57.209 45.455 0.00 0.00 0.00 4.61
2639 5448 3.208570 TCTAAATACCTCACCCCACCA 57.791 47.619 0.00 0.00 0.00 4.17
2643 5452 1.213296 ATACCTCACCCCACCATCAC 58.787 55.000 0.00 0.00 0.00 3.06
2647 5456 3.646715 CACCCCACCATCACCGGT 61.647 66.667 0.00 0.00 41.07 5.28
2648 5457 2.856988 ACCCCACCATCACCGGTT 60.857 61.111 2.97 0.00 37.07 4.44
2649 5458 1.539372 ACCCCACCATCACCGGTTA 60.539 57.895 2.97 0.00 37.07 2.85
2650 5459 1.223487 CCCCACCATCACCGGTTAG 59.777 63.158 2.97 0.00 37.07 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 117 2.138596 AAACAACAAGCAAGGCATCG 57.861 45.000 0.00 0.00 0.00 3.84
131 147 6.324254 AGAGGGAGTATATTTATATCCGCCAC 59.676 42.308 0.00 0.00 0.00 5.01
132 148 6.441222 AGAGGGAGTATATTTATATCCGCCA 58.559 40.000 0.00 0.00 0.00 5.69
133 149 6.980416 AGAGGGAGTATATTTATATCCGCC 57.020 41.667 0.00 0.00 0.00 6.13
135 151 8.991783 TGGTAGAGGGAGTATATTTATATCCG 57.008 38.462 0.00 0.00 0.00 4.18
142 158 8.832735 TCAAAAACTGGTAGAGGGAGTATATTT 58.167 33.333 0.00 0.00 0.00 1.40
143 159 8.265764 GTCAAAAACTGGTAGAGGGAGTATATT 58.734 37.037 0.00 0.00 0.00 1.28
144 160 7.402071 TGTCAAAAACTGGTAGAGGGAGTATAT 59.598 37.037 0.00 0.00 0.00 0.86
145 161 6.727231 TGTCAAAAACTGGTAGAGGGAGTATA 59.273 38.462 0.00 0.00 0.00 1.47
146 162 5.546499 TGTCAAAAACTGGTAGAGGGAGTAT 59.454 40.000 0.00 0.00 0.00 2.12
150 187 3.714798 ACTGTCAAAAACTGGTAGAGGGA 59.285 43.478 0.00 0.00 0.00 4.20
157 194 2.446435 ACAGCACTGTCAAAAACTGGT 58.554 42.857 0.00 0.00 40.24 4.00
161 198 6.787085 AGACTATACAGCACTGTCAAAAAC 57.213 37.500 6.56 0.00 43.74 2.43
189 226 7.704472 CAGTCTTGTAGTACAAATTTTGGCAAA 59.296 33.333 16.26 8.93 37.69 3.68
191 228 6.238897 CCAGTCTTGTAGTACAAATTTTGGCA 60.239 38.462 16.26 0.00 37.69 4.92
192 229 6.149633 CCAGTCTTGTAGTACAAATTTTGGC 58.850 40.000 16.26 6.47 37.69 4.52
213 250 8.616076 CATAGAAAAGTTGGTTATTCTAGCCAG 58.384 37.037 0.00 0.00 40.27 4.85
260 297 7.153217 ACATTTTCCCTACAAATTTACGGAG 57.847 36.000 0.00 0.00 0.00 4.63
334 485 9.261035 AGAAAGATCACTTGGTCTATCTTCTTA 57.739 33.333 0.00 0.00 37.63 2.10
335 486 8.144862 AGAAAGATCACTTGGTCTATCTTCTT 57.855 34.615 0.00 0.00 37.63 2.52
430 587 2.297895 TACGCTGACCCCCAAGCAT 61.298 57.895 0.00 0.00 0.00 3.79
463 620 2.936202 ACTTTGCAACATCTGGTCAGT 58.064 42.857 0.00 0.00 0.00 3.41
464 621 4.275689 TGTTACTTTGCAACATCTGGTCAG 59.724 41.667 0.00 0.00 31.11 3.51
467 624 3.951037 TGTGTTACTTTGCAACATCTGGT 59.049 39.130 0.00 0.00 38.13 4.00
470 627 5.835113 ACTTGTGTTACTTTGCAACATCT 57.165 34.783 0.00 0.00 38.13 2.90
472 629 6.870965 TCAAAACTTGTGTTACTTTGCAACAT 59.129 30.769 0.00 0.00 38.13 2.71
479 653 9.581099 CCATTTACTCAAAACTTGTGTTACTTT 57.419 29.630 0.03 0.00 38.26 2.66
486 660 4.440758 CACGCCATTTACTCAAAACTTGTG 59.559 41.667 0.00 0.00 0.00 3.33
487 661 4.606961 CACGCCATTTACTCAAAACTTGT 58.393 39.130 0.00 0.00 0.00 3.16
488 662 3.425193 GCACGCCATTTACTCAAAACTTG 59.575 43.478 0.00 0.00 0.00 3.16
509 1964 0.109873 ATAGTCTATACGCACGCGGC 60.110 55.000 16.70 10.52 44.69 6.53
511 1966 3.719083 ACTATAGTCTATACGCACGCG 57.281 47.619 10.36 10.36 46.03 6.01
512 1967 7.009999 ACTGTATACTATAGTCTATACGCACGC 59.990 40.741 9.12 0.00 0.00 5.34
513 1968 8.319585 CACTGTATACTATAGTCTATACGCACG 58.680 40.741 9.12 5.89 0.00 5.34
514 1969 8.602328 CCACTGTATACTATAGTCTATACGCAC 58.398 40.741 9.12 0.00 0.00 5.34
515 1970 7.279536 GCCACTGTATACTATAGTCTATACGCA 59.720 40.741 9.12 0.00 0.00 5.24
516 1971 7.279536 TGCCACTGTATACTATAGTCTATACGC 59.720 40.741 9.12 11.19 0.00 4.42
518 1973 8.614346 GCTGCCACTGTATACTATAGTCTATAC 58.386 40.741 9.12 12.84 0.00 1.47
521 1976 5.944599 GGCTGCCACTGTATACTATAGTCTA 59.055 44.000 15.17 0.77 0.00 2.59
522 1977 4.767928 GGCTGCCACTGTATACTATAGTCT 59.232 45.833 15.17 1.89 0.00 3.24
523 1978 4.082136 GGGCTGCCACTGTATACTATAGTC 60.082 50.000 22.05 0.00 0.00 2.59
524 1979 3.833070 GGGCTGCCACTGTATACTATAGT 59.167 47.826 22.05 10.87 0.00 2.12
525 1980 3.832490 TGGGCTGCCACTGTATACTATAG 59.168 47.826 22.05 0.00 0.00 1.31
526 1981 3.576982 GTGGGCTGCCACTGTATACTATA 59.423 47.826 22.05 0.00 37.68 1.31
527 1982 2.368875 GTGGGCTGCCACTGTATACTAT 59.631 50.000 22.05 0.00 37.68 2.12
528 1983 1.760613 GTGGGCTGCCACTGTATACTA 59.239 52.381 22.05 0.00 37.68 1.82
529 1984 0.541863 GTGGGCTGCCACTGTATACT 59.458 55.000 22.05 0.00 37.68 2.12
530 1985 0.810031 CGTGGGCTGCCACTGTATAC 60.810 60.000 22.05 6.32 38.43 1.47
531 1986 1.261938 ACGTGGGCTGCCACTGTATA 61.262 55.000 22.05 0.00 38.43 1.47
532 1987 2.124507 AACGTGGGCTGCCACTGTAT 62.125 55.000 22.05 0.00 38.43 2.29
533 1988 2.725203 GAACGTGGGCTGCCACTGTA 62.725 60.000 22.05 0.00 38.43 2.74
534 1989 4.189580 AACGTGGGCTGCCACTGT 62.190 61.111 22.05 11.91 38.43 3.55
535 1990 3.357079 GAACGTGGGCTGCCACTG 61.357 66.667 22.05 11.23 38.43 3.66
536 1991 4.988598 CGAACGTGGGCTGCCACT 62.989 66.667 22.05 2.13 38.43 4.00
564 2047 7.385478 CCCTAGTTGTCTACACTCTTTTCTTTC 59.615 40.741 0.00 0.00 0.00 2.62
565 2048 7.217906 CCCTAGTTGTCTACACTCTTTTCTTT 58.782 38.462 0.00 0.00 0.00 2.52
568 2051 4.930405 GCCCTAGTTGTCTACACTCTTTTC 59.070 45.833 0.00 0.00 0.00 2.29
573 2057 2.826725 ACAGCCCTAGTTGTCTACACTC 59.173 50.000 0.00 0.00 30.68 3.51
615 2099 0.174845 GCACATGGCAATGCATCACT 59.825 50.000 18.98 0.00 43.97 3.41
616 2100 2.673074 GCACATGGCAATGCATCAC 58.327 52.632 18.98 0.00 43.97 3.06
638 2122 6.957150 ACTTAGTGAGTACTATACGATGCAC 58.043 40.000 0.00 0.00 39.08 4.57
639 2123 7.930325 ACTACTTAGTGAGTACTATACGATGCA 59.070 37.037 0.00 0.00 39.08 3.96
640 2124 8.309163 ACTACTTAGTGAGTACTATACGATGC 57.691 38.462 0.00 0.00 39.08 3.91
660 2144 6.127703 CCACTACACTGTGCAACTATACTACT 60.128 42.308 7.90 0.00 38.04 2.57
661 2145 6.034591 CCACTACACTGTGCAACTATACTAC 58.965 44.000 7.90 0.00 38.04 2.73
791 2597 4.507710 TCAGTCTTATCCACTGCATCAAC 58.492 43.478 0.00 0.00 41.04 3.18
792 2598 4.824479 TCAGTCTTATCCACTGCATCAA 57.176 40.909 0.00 0.00 41.04 2.57
816 2622 8.916062 TCATACGGACCAAAATACAGTAGATTA 58.084 33.333 0.00 0.00 0.00 1.75
818 2624 7.356089 TCATACGGACCAAAATACAGTAGAT 57.644 36.000 0.00 0.00 0.00 1.98
820 2626 7.207383 TCATCATACGGACCAAAATACAGTAG 58.793 38.462 0.00 0.00 0.00 2.57
821 2627 7.114866 TCATCATACGGACCAAAATACAGTA 57.885 36.000 0.00 0.00 0.00 2.74
835 2658 9.869757 TTATGGTCAGTAAATATCATCATACGG 57.130 33.333 0.00 0.00 0.00 4.02
1084 3089 2.435059 GACCTGGAAGCGGCAGAC 60.435 66.667 0.00 0.00 0.00 3.51
1124 3158 0.469070 AGAGGAGAGACATGCATGGC 59.531 55.000 29.41 27.74 35.53 4.40
1158 3203 2.291043 CCCGGGCTCCTGTGTAACT 61.291 63.158 8.08 0.00 38.04 2.24
1160 3205 3.006728 CCCCGGGCTCCTGTGTAA 61.007 66.667 17.73 0.00 0.00 2.41
1161 3206 4.326227 ACCCCGGGCTCCTGTGTA 62.326 66.667 17.73 0.00 0.00 2.90
1649 3700 5.562890 GCGTTATCCTTTTCAGCTGTTCTTT 60.563 40.000 14.67 0.00 0.00 2.52
1699 3750 0.038618 CACGTCCAACGATCCACAGA 60.039 55.000 6.48 0.00 46.05 3.41
1701 3752 0.598942 CACACGTCCAACGATCCACA 60.599 55.000 6.48 0.00 46.05 4.17
1714 3765 1.867233 GATCAAACTGACAGCACACGT 59.133 47.619 1.25 0.00 0.00 4.49
1716 3767 3.424039 CGATGATCAAACTGACAGCACAC 60.424 47.826 0.00 0.00 0.00 3.82
1721 3772 3.060674 GCGATCGATGATCAAACTGACAG 60.061 47.826 21.57 0.00 38.84 3.51
1739 3790 2.000447 GCAAGGAAAGTACGAAGCGAT 59.000 47.619 0.00 0.00 0.00 4.58
1743 3794 4.608445 CGAACAAGCAAGGAAAGTACGAAG 60.608 45.833 0.00 0.00 0.00 3.79
1755 3806 1.269206 ACATGCCAACGAACAAGCAAG 60.269 47.619 0.00 0.00 38.99 4.01
1772 3823 7.720442 TCTTAACTGATGAGATGAATCGACAT 58.280 34.615 0.00 0.00 33.85 3.06
1795 3846 4.894114 AGCAGTTATTATCCACGGTACTCT 59.106 41.667 0.00 0.00 0.00 3.24
1796 3847 5.009811 AGAGCAGTTATTATCCACGGTACTC 59.990 44.000 0.00 0.00 0.00 2.59
1797 3848 4.894114 AGAGCAGTTATTATCCACGGTACT 59.106 41.667 0.00 0.00 0.00 2.73
1798 3849 4.982916 CAGAGCAGTTATTATCCACGGTAC 59.017 45.833 0.00 0.00 0.00 3.34
1799 3850 4.500887 GCAGAGCAGTTATTATCCACGGTA 60.501 45.833 0.00 0.00 0.00 4.02
1800 3851 3.741388 GCAGAGCAGTTATTATCCACGGT 60.741 47.826 0.00 0.00 0.00 4.83
1814 3865 1.653835 CGTCGATCGAGCAGAGCAG 60.654 63.158 20.09 0.00 42.86 4.24
1835 3886 0.324614 TGGGCATACACAGACACAGG 59.675 55.000 0.00 0.00 0.00 4.00
1866 3923 5.246429 AGAGAAAAAGAATAGTGACGGGACT 59.754 40.000 0.00 0.00 0.00 3.85
1870 3927 7.093992 AGAGAAGAGAAAAAGAATAGTGACGG 58.906 38.462 0.00 0.00 0.00 4.79
1892 3949 8.978539 GTGTTTGCCCTTTTATTAGAAAAAGAG 58.021 33.333 9.95 0.00 45.33 2.85
1893 3950 7.929245 GGTGTTTGCCCTTTTATTAGAAAAAGA 59.071 33.333 9.95 0.00 45.33 2.52
1894 3951 7.713073 TGGTGTTTGCCCTTTTATTAGAAAAAG 59.287 33.333 2.77 2.77 43.19 2.27
1895 3952 7.565680 TGGTGTTTGCCCTTTTATTAGAAAAA 58.434 30.769 0.00 0.00 0.00 1.94
1896 3953 7.125792 TGGTGTTTGCCCTTTTATTAGAAAA 57.874 32.000 0.00 0.00 0.00 2.29
1897 3954 6.732896 TGGTGTTTGCCCTTTTATTAGAAA 57.267 33.333 0.00 0.00 0.00 2.52
1898 3955 6.926630 ATGGTGTTTGCCCTTTTATTAGAA 57.073 33.333 0.00 0.00 0.00 2.10
1917 3974 7.834881 TGTACTGCTAAGCTTAGTATATGGT 57.165 36.000 29.42 21.69 33.32 3.55
1925 3982 7.549488 AGGTGTTTTATGTACTGCTAAGCTTAG 59.451 37.037 26.20 26.20 0.00 2.18
1933 3990 9.509956 TTTATGTAAGGTGTTTTATGTACTGCT 57.490 29.630 0.00 0.00 0.00 4.24
1939 3996 7.586747 CACGGTTTATGTAAGGTGTTTTATGT 58.413 34.615 0.00 0.00 0.00 2.29
1942 3999 5.048852 GGCACGGTTTATGTAAGGTGTTTTA 60.049 40.000 0.00 0.00 0.00 1.52
1990 4050 1.836802 AGCATGAGGAAGAAGACTCCC 59.163 52.381 0.00 0.00 32.80 4.30
1998 4058 4.718774 AGAGGTTCATAAGCATGAGGAAGA 59.281 41.667 0.00 0.00 42.11 2.87
2009 4069 5.060662 TCGTCAAGACAGAGGTTCATAAG 57.939 43.478 0.72 0.00 0.00 1.73
2012 4072 3.322254 ACTTCGTCAAGACAGAGGTTCAT 59.678 43.478 0.72 0.00 33.34 2.57
2016 4076 2.307768 TCACTTCGTCAAGACAGAGGT 58.692 47.619 0.72 3.19 33.34 3.85
2028 4088 4.693566 TGAGTTTCAACAAGTTCACTTCGT 59.306 37.500 0.00 0.00 33.11 3.85
2029 4089 5.063438 TCTGAGTTTCAACAAGTTCACTTCG 59.937 40.000 0.00 0.00 33.11 3.79
2050 4110 2.158449 CCGCTGCTTCTACAAGTTTCTG 59.842 50.000 0.00 0.00 31.45 3.02
2071 4131 6.032094 TGGTCTATATCGACGACTTTTTCAC 58.968 40.000 0.00 0.00 34.75 3.18
2072 4132 6.198650 TGGTCTATATCGACGACTTTTTCA 57.801 37.500 0.00 0.00 34.75 2.69
2073 4133 7.113684 CAGATGGTCTATATCGACGACTTTTTC 59.886 40.741 0.00 0.00 34.75 2.29
2084 4144 4.286101 CGCTATGCAGATGGTCTATATCG 58.714 47.826 0.00 0.00 0.00 2.92
2088 4148 2.529632 TCCGCTATGCAGATGGTCTAT 58.470 47.619 0.00 0.00 0.00 1.98
2091 4151 1.802960 CAATCCGCTATGCAGATGGTC 59.197 52.381 0.00 0.00 0.00 4.02
2110 4171 0.544697 GGGTTTTCTCGGGGATAGCA 59.455 55.000 0.00 0.00 0.00 3.49
2129 4190 1.850640 GGACGTGGCGCATTATACG 59.149 57.895 10.83 13.74 41.86 3.06
2143 4204 1.079127 AAATCAGTCTGGCCGGACG 60.079 57.895 33.83 27.77 40.76 4.79
2144 4205 0.036388 TCAAATCAGTCTGGCCGGAC 60.036 55.000 33.77 33.77 36.56 4.79
2156 4220 6.768483 TGTGAGAGTTGTATTCCTCAAATCA 58.232 36.000 8.37 0.00 40.70 2.57
2161 4225 4.020307 TGCATGTGAGAGTTGTATTCCTCA 60.020 41.667 0.00 0.00 33.72 3.86
2188 4252 3.650281 TGGCCAGATTCAGCTTCATTA 57.350 42.857 0.00 0.00 0.00 1.90
2189 4253 2.494870 GTTGGCCAGATTCAGCTTCATT 59.505 45.455 5.11 0.00 0.00 2.57
2214 4278 2.049802 GGCTCGTTTCGACCGACA 60.050 61.111 2.45 0.00 0.00 4.35
2217 4281 2.801113 TTACCGGCTCGTTTCGACCG 62.801 60.000 0.00 18.33 43.90 4.79
2256 4322 2.619590 CCTGTAATAGGCCCGTGGTTTT 60.620 50.000 0.00 0.00 40.38 2.43
2261 4327 1.120530 ACTCCTGTAATAGGCCCGTG 58.879 55.000 0.00 0.00 46.87 4.94
2264 4330 4.445879 CCCTAAAACTCCTGTAATAGGCCC 60.446 50.000 0.00 0.00 46.87 5.80
2265 4331 4.165565 ACCCTAAAACTCCTGTAATAGGCC 59.834 45.833 0.00 0.00 46.87 5.19
2266 4332 5.366460 GACCCTAAAACTCCTGTAATAGGC 58.634 45.833 0.00 0.00 46.87 3.93
2268 4334 6.809976 AGGACCCTAAAACTCCTGTAATAG 57.190 41.667 0.00 0.00 32.85 1.73
2269 4335 7.238096 TGAAAGGACCCTAAAACTCCTGTAATA 59.762 37.037 0.00 0.00 34.46 0.98
2270 4336 6.045106 TGAAAGGACCCTAAAACTCCTGTAAT 59.955 38.462 0.00 0.00 34.46 1.89
2271 4337 5.370289 TGAAAGGACCCTAAAACTCCTGTAA 59.630 40.000 0.00 0.00 34.46 2.41
2272 4338 4.909088 TGAAAGGACCCTAAAACTCCTGTA 59.091 41.667 0.00 0.00 34.46 2.74
2273 4339 3.720002 TGAAAGGACCCTAAAACTCCTGT 59.280 43.478 0.00 0.00 34.46 4.00
2274 4340 4.072839 GTGAAAGGACCCTAAAACTCCTG 58.927 47.826 0.00 0.00 34.46 3.86
2275 4341 3.981375 AGTGAAAGGACCCTAAAACTCCT 59.019 43.478 0.00 0.00 35.83 3.69
2276 4342 4.368565 AGTGAAAGGACCCTAAAACTCC 57.631 45.455 0.00 0.00 0.00 3.85
2277 4343 7.883833 AGAATTAGTGAAAGGACCCTAAAACTC 59.116 37.037 0.00 0.00 0.00 3.01
2278 4344 7.756614 AGAATTAGTGAAAGGACCCTAAAACT 58.243 34.615 0.00 0.00 0.00 2.66
2279 4345 7.883833 AGAGAATTAGTGAAAGGACCCTAAAAC 59.116 37.037 0.00 0.00 0.00 2.43
2280 4346 7.985589 AGAGAATTAGTGAAAGGACCCTAAAA 58.014 34.615 0.00 0.00 0.00 1.52
2281 4347 7.311109 GGAGAGAATTAGTGAAAGGACCCTAAA 60.311 40.741 0.00 0.00 0.00 1.85
2282 4348 6.156429 GGAGAGAATTAGTGAAAGGACCCTAA 59.844 42.308 0.00 0.00 0.00 2.69
2283 4349 5.661759 GGAGAGAATTAGTGAAAGGACCCTA 59.338 44.000 0.00 0.00 0.00 3.53
2284 4350 4.471747 GGAGAGAATTAGTGAAAGGACCCT 59.528 45.833 0.00 0.00 0.00 4.34
2285 4351 4.225267 TGGAGAGAATTAGTGAAAGGACCC 59.775 45.833 0.00 0.00 0.00 4.46
2288 4354 5.306937 TGTGTGGAGAGAATTAGTGAAAGGA 59.693 40.000 0.00 0.00 0.00 3.36
2293 4359 4.262463 GGTGTGTGTGGAGAGAATTAGTGA 60.262 45.833 0.00 0.00 0.00 3.41
2295 4361 3.008049 GGGTGTGTGTGGAGAGAATTAGT 59.992 47.826 0.00 0.00 0.00 2.24
2296 4362 3.600388 GGGTGTGTGTGGAGAGAATTAG 58.400 50.000 0.00 0.00 0.00 1.73
2307 4373 2.276732 AATTCAGAGGGGTGTGTGTG 57.723 50.000 0.00 0.00 0.00 3.82
2310 4376 3.139397 TGGTAAAATTCAGAGGGGTGTGT 59.861 43.478 0.00 0.00 0.00 3.72
2311 4377 3.761897 TGGTAAAATTCAGAGGGGTGTG 58.238 45.455 0.00 0.00 0.00 3.82
2312 4378 4.463050 TTGGTAAAATTCAGAGGGGTGT 57.537 40.909 0.00 0.00 0.00 4.16
2314 4380 5.016831 GTGATTGGTAAAATTCAGAGGGGT 58.983 41.667 0.00 0.00 0.00 4.95
2318 4384 7.115378 GCAAGTTGTGATTGGTAAAATTCAGAG 59.885 37.037 4.48 0.00 0.00 3.35
2319 4385 6.922957 GCAAGTTGTGATTGGTAAAATTCAGA 59.077 34.615 4.48 0.00 0.00 3.27
2320 4386 6.146021 GGCAAGTTGTGATTGGTAAAATTCAG 59.854 38.462 4.48 0.00 0.00 3.02
2321 4387 5.988561 GGCAAGTTGTGATTGGTAAAATTCA 59.011 36.000 4.48 0.00 0.00 2.57
2322 4388 5.988561 TGGCAAGTTGTGATTGGTAAAATTC 59.011 36.000 4.48 0.00 0.00 2.17
2323 4389 5.923204 TGGCAAGTTGTGATTGGTAAAATT 58.077 33.333 4.48 0.00 0.00 1.82
2324 4390 5.543507 TGGCAAGTTGTGATTGGTAAAAT 57.456 34.783 4.48 0.00 0.00 1.82
2327 4393 3.243704 GCTTGGCAAGTTGTGATTGGTAA 60.244 43.478 26.71 0.00 0.00 2.85
2328 4394 2.295909 GCTTGGCAAGTTGTGATTGGTA 59.704 45.455 26.71 0.00 0.00 3.25
2329 4395 1.069049 GCTTGGCAAGTTGTGATTGGT 59.931 47.619 26.71 0.00 0.00 3.67
2335 4411 2.021355 TTTTGGCTTGGCAAGTTGTG 57.979 45.000 26.71 4.06 0.00 3.33
2349 4425 4.142249 GGGGATTTTACGGAGTGATTTTGG 60.142 45.833 0.00 0.00 45.73 3.28
2356 4432 6.709018 ATTTTATGGGGATTTTACGGAGTG 57.291 37.500 0.00 0.00 45.73 3.51
2371 4447 4.081917 ACGCTACACCCCAAAATTTTATGG 60.082 41.667 13.62 13.62 36.42 2.74
2372 4448 5.066968 ACGCTACACCCCAAAATTTTATG 57.933 39.130 2.44 3.05 0.00 1.90
2373 4449 5.731957 AACGCTACACCCCAAAATTTTAT 57.268 34.783 2.44 0.00 0.00 1.40
2374 4450 5.769162 AGTAACGCTACACCCCAAAATTTTA 59.231 36.000 2.44 0.00 0.00 1.52
2376 4452 4.146564 AGTAACGCTACACCCCAAAATTT 58.853 39.130 0.00 0.00 0.00 1.82
2377 4453 3.754850 GAGTAACGCTACACCCCAAAATT 59.245 43.478 0.00 0.00 0.00 1.82
2378 4454 3.244630 TGAGTAACGCTACACCCCAAAAT 60.245 43.478 0.00 0.00 0.00 1.82
2381 4457 1.001181 GTGAGTAACGCTACACCCCAA 59.999 52.381 0.00 0.00 0.00 4.12
2382 4458 0.604578 GTGAGTAACGCTACACCCCA 59.395 55.000 0.00 0.00 0.00 4.96
2383 4459 0.108472 GGTGAGTAACGCTACACCCC 60.108 60.000 0.00 0.00 44.59 4.95
2427 4503 1.289109 CGTTGGCGTTGTCCTACAGG 61.289 60.000 0.00 0.00 32.54 4.00
2442 4518 7.925703 TTTCTTCTACAAGTTAGTCTCGTTG 57.074 36.000 0.00 0.00 0.00 4.10
2448 4524 7.713942 TCTTGGGTTTTCTTCTACAAGTTAGTC 59.286 37.037 0.00 0.00 37.27 2.59
2449 4525 7.571025 TCTTGGGTTTTCTTCTACAAGTTAGT 58.429 34.615 0.00 0.00 37.27 2.24
2451 4527 7.283807 GGTTCTTGGGTTTTCTTCTACAAGTTA 59.716 37.037 0.00 0.00 37.27 2.24
2470 4546 3.126831 GCGTCCTCAGATATGGTTCTTG 58.873 50.000 0.00 0.00 0.00 3.02
2471 4547 2.766263 TGCGTCCTCAGATATGGTTCTT 59.234 45.455 0.00 0.00 0.00 2.52
2499 4581 1.003355 ATGTTGAGAGGCGTGTGGG 60.003 57.895 0.00 0.00 0.00 4.61
2508 4590 0.368227 GCTTCGTCGCATGTTGAGAG 59.632 55.000 0.00 0.00 0.00 3.20
2515 4597 0.737367 TGAAGGAGCTTCGTCGCATG 60.737 55.000 3.34 0.00 42.78 4.06
2516 4598 0.037326 TTGAAGGAGCTTCGTCGCAT 60.037 50.000 3.34 0.00 42.78 4.73
2517 4599 0.249699 TTTGAAGGAGCTTCGTCGCA 60.250 50.000 3.34 0.00 42.78 5.10
2518 4600 0.865769 TTTTGAAGGAGCTTCGTCGC 59.134 50.000 3.34 0.00 42.78 5.19
2519 4601 1.136611 CGTTTTGAAGGAGCTTCGTCG 60.137 52.381 3.34 0.00 42.78 5.12
2520 4602 2.132762 TCGTTTTGAAGGAGCTTCGTC 58.867 47.619 0.21 0.21 42.78 4.20
2521 4603 2.135933 CTCGTTTTGAAGGAGCTTCGT 58.864 47.619 0.00 0.00 42.78 3.85
2522 4604 1.461127 CCTCGTTTTGAAGGAGCTTCG 59.539 52.381 5.18 0.00 42.78 3.79
2523 4605 2.480802 GTCCTCGTTTTGAAGGAGCTTC 59.519 50.000 5.18 0.00 40.97 3.86
2524 4606 2.495084 GTCCTCGTTTTGAAGGAGCTT 58.505 47.619 5.18 0.00 40.97 3.74
2527 4609 2.030185 TCTCGTCCTCGTTTTGAAGGAG 60.030 50.000 3.98 3.98 41.73 3.69
2528 4610 1.958579 TCTCGTCCTCGTTTTGAAGGA 59.041 47.619 0.00 0.00 38.33 3.36
2529 4611 2.059541 GTCTCGTCCTCGTTTTGAAGG 58.940 52.381 0.00 0.00 38.33 3.46
2530 4612 1.714460 CGTCTCGTCCTCGTTTTGAAG 59.286 52.381 0.00 0.00 38.33 3.02
2531 4613 1.601162 CCGTCTCGTCCTCGTTTTGAA 60.601 52.381 0.00 0.00 38.33 2.69
2533 4615 1.007336 CCCGTCTCGTCCTCGTTTTG 61.007 60.000 0.00 0.00 38.33 2.44
2534 4616 1.174712 TCCCGTCTCGTCCTCGTTTT 61.175 55.000 0.00 0.00 38.33 2.43
2535 4617 1.174712 TTCCCGTCTCGTCCTCGTTT 61.175 55.000 0.00 0.00 38.33 3.60
2536 4618 1.584380 CTTCCCGTCTCGTCCTCGTT 61.584 60.000 0.00 0.00 38.33 3.85
2538 4620 1.744368 TCTTCCCGTCTCGTCCTCG 60.744 63.158 0.00 0.00 38.55 4.63
2542 4624 3.488890 GGAATAAGTCTTCCCGTCTCGTC 60.489 52.174 0.00 0.00 39.06 4.20
2543 4625 2.426381 GGAATAAGTCTTCCCGTCTCGT 59.574 50.000 0.00 0.00 39.06 4.18
2544 4626 2.426024 TGGAATAAGTCTTCCCGTCTCG 59.574 50.000 0.67 0.00 43.47 4.04
2545 4627 4.141914 ACATGGAATAAGTCTTCCCGTCTC 60.142 45.833 0.00 0.00 43.47 3.36
2547 4629 4.138487 ACATGGAATAAGTCTTCCCGTC 57.862 45.455 0.00 0.00 43.47 4.79
2548 4630 4.019681 TCAACATGGAATAAGTCTTCCCGT 60.020 41.667 0.00 0.00 43.47 5.28
2550 4632 4.332819 CGTCAACATGGAATAAGTCTTCCC 59.667 45.833 0.00 0.00 43.47 3.97
2551 4633 4.332819 CCGTCAACATGGAATAAGTCTTCC 59.667 45.833 0.00 0.00 44.23 3.46
2553 4635 3.689649 GCCGTCAACATGGAATAAGTCTT 59.310 43.478 0.00 0.00 0.00 3.01
2554 4636 3.270877 GCCGTCAACATGGAATAAGTCT 58.729 45.455 0.00 0.00 0.00 3.24
2556 4638 2.006888 CGCCGTCAACATGGAATAAGT 58.993 47.619 0.00 0.00 0.00 2.24
2557 4639 2.276201 TCGCCGTCAACATGGAATAAG 58.724 47.619 0.00 0.00 0.00 1.73
2558 4640 2.388310 TCGCCGTCAACATGGAATAA 57.612 45.000 0.00 0.00 0.00 1.40
2559 4641 2.479837 GATCGCCGTCAACATGGAATA 58.520 47.619 0.00 0.00 0.00 1.75
2561 4643 0.742990 GGATCGCCGTCAACATGGAA 60.743 55.000 0.00 0.00 0.00 3.53
2563 4645 2.180204 GGGATCGCCGTCAACATGG 61.180 63.158 0.00 0.00 33.83 3.66
2564 4646 0.815213 ATGGGATCGCCGTCAACATG 60.815 55.000 7.38 0.00 33.83 3.21
2575 5384 2.756042 TTGGGAGGCCATGGGATCG 61.756 63.158 15.13 0.00 0.00 3.69
2577 5386 2.704424 GGTTGGGAGGCCATGGGAT 61.704 63.158 15.13 0.00 0.00 3.85
2579 5388 3.236769 TTGGTTGGGAGGCCATGGG 62.237 63.158 15.13 0.00 34.37 4.00
2580 5389 1.683365 CTTGGTTGGGAGGCCATGG 60.683 63.158 7.63 7.63 34.37 3.66
2581 5390 1.683365 CCTTGGTTGGGAGGCCATG 60.683 63.158 5.01 0.00 34.37 3.66
2582 5391 1.224003 ATCCTTGGTTGGGAGGCCAT 61.224 55.000 5.01 0.00 36.21 4.40
2583 5392 1.442886 AATCCTTGGTTGGGAGGCCA 61.443 55.000 5.01 0.00 36.21 5.36
2584 5393 0.972471 CAATCCTTGGTTGGGAGGCC 60.972 60.000 0.00 0.00 36.21 5.19
2585 5394 0.251787 ACAATCCTTGGTTGGGAGGC 60.252 55.000 0.00 0.00 36.21 4.70
2586 5395 1.549203 CACAATCCTTGGTTGGGAGG 58.451 55.000 0.00 0.00 36.21 4.30
2587 5396 1.075374 TCCACAATCCTTGGTTGGGAG 59.925 52.381 0.00 0.00 36.21 4.30
2590 5399 2.806434 TGATCCACAATCCTTGGTTGG 58.194 47.619 0.00 0.00 35.42 3.77
2591 5400 4.870123 TTTGATCCACAATCCTTGGTTG 57.130 40.909 0.00 0.00 38.36 3.77
2592 5401 5.781818 AGATTTTGATCCACAATCCTTGGTT 59.218 36.000 0.00 0.00 38.36 3.67
2594 5403 5.927281 AGATTTTGATCCACAATCCTTGG 57.073 39.130 0.00 0.00 38.36 3.61
2595 5404 8.910944 AGATTAGATTTTGATCCACAATCCTTG 58.089 33.333 0.00 0.00 38.36 3.61
2609 5418 9.067986 GGGGTGAGGTATTTAGATTAGATTTTG 57.932 37.037 0.00 0.00 0.00 2.44
2610 5419 8.787818 TGGGGTGAGGTATTTAGATTAGATTTT 58.212 33.333 0.00 0.00 0.00 1.82
2612 5421 7.202195 GGTGGGGTGAGGTATTTAGATTAGATT 60.202 40.741 0.00 0.00 0.00 2.40
2613 5422 6.272558 GGTGGGGTGAGGTATTTAGATTAGAT 59.727 42.308 0.00 0.00 0.00 1.98
2615 5424 5.368523 TGGTGGGGTGAGGTATTTAGATTAG 59.631 44.000 0.00 0.00 0.00 1.73
2618 5427 3.743132 TGGTGGGGTGAGGTATTTAGAT 58.257 45.455 0.00 0.00 0.00 1.98
2619 5428 3.208570 TGGTGGGGTGAGGTATTTAGA 57.791 47.619 0.00 0.00 0.00 2.10
2621 5430 3.201266 GTGATGGTGGGGTGAGGTATTTA 59.799 47.826 0.00 0.00 0.00 1.40
2622 5431 2.025321 GTGATGGTGGGGTGAGGTATTT 60.025 50.000 0.00 0.00 0.00 1.40
2623 5432 1.564348 GTGATGGTGGGGTGAGGTATT 59.436 52.381 0.00 0.00 0.00 1.89
2625 5434 0.912487 GGTGATGGTGGGGTGAGGTA 60.912 60.000 0.00 0.00 0.00 3.08
2626 5435 2.231380 GGTGATGGTGGGGTGAGGT 61.231 63.158 0.00 0.00 0.00 3.85
2627 5436 2.677228 GGTGATGGTGGGGTGAGG 59.323 66.667 0.00 0.00 0.00 3.86
2628 5437 2.268920 CGGTGATGGTGGGGTGAG 59.731 66.667 0.00 0.00 0.00 3.51
2629 5438 3.326578 CCGGTGATGGTGGGGTGA 61.327 66.667 0.00 0.00 0.00 4.02
2630 5439 1.843462 TAACCGGTGATGGTGGGGTG 61.843 60.000 8.52 0.00 42.89 4.61
2631 5440 1.539372 TAACCGGTGATGGTGGGGT 60.539 57.895 8.52 0.00 42.89 4.95
2632 5441 1.223487 CTAACCGGTGATGGTGGGG 59.777 63.158 8.52 0.00 42.89 4.96
2633 5442 4.954933 CTAACCGGTGATGGTGGG 57.045 61.111 8.52 0.00 42.89 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.