Multiple sequence alignment - TraesCS5D01G506700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G506700 chr5D 100.000 5928 0 0 1 5928 532279941 532274014 0.000000e+00 10948.0
1 TraesCS5D01G506700 chr5D 79.323 798 121 32 942 1713 532271277 532272056 2.450000e-143 520.0
2 TraesCS5D01G506700 chr5B 94.733 4974 171 40 503 5432 671714822 671709896 0.000000e+00 7649.0
3 TraesCS5D01G506700 chr5B 85.138 1884 167 55 3298 5145 671494367 671496173 0.000000e+00 1823.0
4 TraesCS5D01G506700 chr5B 89.494 790 60 10 1646 2414 671487669 671488456 0.000000e+00 977.0
5 TraesCS5D01G506700 chr5B 90.274 658 52 4 942 1599 671487020 671487665 0.000000e+00 850.0
6 TraesCS5D01G506700 chr5B 88.816 608 53 11 2468 3070 671493732 671494329 0.000000e+00 732.0
7 TraesCS5D01G506700 chr5B 81.031 912 136 24 4158 5039 671506663 671507567 0.000000e+00 691.0
8 TraesCS5D01G506700 chr5B 77.567 1003 148 39 1445 2410 671503150 671504112 8.740000e-148 534.0
9 TraesCS5D01G506700 chr5B 79.630 756 120 28 976 1713 671706417 671707156 4.100000e-141 512.0
10 TraesCS5D01G506700 chr5B 81.505 638 77 21 2434 3047 671504109 671504729 2.480000e-133 486.0
11 TraesCS5D01G506700 chr5B 83.910 491 67 4 3519 4001 671505956 671506442 5.410000e-125 459.0
12 TraesCS5D01G506700 chr5B 93.590 312 12 1 5617 5928 671709714 671709411 5.410000e-125 459.0
13 TraesCS5D01G506700 chr5B 86.842 380 35 9 127 493 671716352 671715975 1.540000e-110 411.0
14 TraesCS5D01G506700 chr5B 78.571 294 33 17 5509 5800 671496481 671496746 3.670000e-37 167.0
15 TraesCS5D01G506700 chr5B 83.562 146 24 0 1946 2091 671356182 671356037 2.880000e-28 137.0
16 TraesCS5D01G506700 chr5B 96.364 55 2 0 5433 5487 671709859 671709805 2.280000e-14 91.6
17 TraesCS5D01G506700 chr4A 94.773 4802 194 32 495 5260 639992988 639997768 0.000000e+00 7424.0
18 TraesCS5D01G506700 chr4A 91.336 681 51 2 860 1540 639954626 639955298 0.000000e+00 924.0
19 TraesCS5D01G506700 chr4A 92.740 551 28 1 860 1410 639961919 639962457 0.000000e+00 785.0
20 TraesCS5D01G506700 chr4A 80.605 1057 143 34 3492 4505 637194900 637193863 0.000000e+00 760.0
21 TraesCS5D01G506700 chr4A 97.072 444 12 1 5485 5928 639997843 639998285 0.000000e+00 747.0
22 TraesCS5D01G506700 chr4A 79.855 963 114 35 4108 5048 637204503 637203599 1.080000e-176 630.0
23 TraesCS5D01G506700 chr4A 80.482 871 128 22 4200 5045 637229067 637228214 3.900000e-176 628.0
24 TraesCS5D01G506700 chr4A 75.910 1154 210 53 983 2091 640002503 640003633 4.070000e-146 529.0
25 TraesCS5D01G506700 chr4A 79.840 749 119 25 985 1719 640001161 640000431 8.810000e-143 518.0
26 TraesCS5D01G506700 chr4A 80.476 210 40 1 1942 2150 640000166 639999957 6.150000e-35 159.0
27 TraesCS5D01G506700 chr4B 91.107 2114 141 13 934 3040 15421296 15419223 0.000000e+00 2819.0
28 TraesCS5D01G506700 chr4B 91.060 2114 141 14 934 3040 14533795 14531723 0.000000e+00 2813.0
29 TraesCS5D01G506700 chr4B 95.593 1316 38 9 3073 4382 14531729 14530428 0.000000e+00 2091.0
30 TraesCS5D01G506700 chr4B 95.077 1097 34 9 3292 4382 15418895 15417813 0.000000e+00 1709.0
31 TraesCS5D01G506700 chr4B 95.221 565 18 1 4339 4894 15417772 15417208 0.000000e+00 885.0
32 TraesCS5D01G506700 chr4B 95.044 565 19 1 4339 4894 14530387 14529823 0.000000e+00 880.0
33 TraesCS5D01G506700 chr4B 96.404 445 14 1 5485 5927 14529582 14529138 0.000000e+00 732.0
34 TraesCS5D01G506700 chr4B 96.207 290 8 1 5485 5771 15416956 15416667 6.950000e-129 472.0
35 TraesCS5D01G506700 chr4B 99.095 221 2 0 3073 3293 15419229 15419009 1.200000e-106 398.0
36 TraesCS5D01G506700 chr4B 96.094 128 3 1 5802 5927 15416672 15416545 2.170000e-49 207.0
37 TraesCS5D01G506700 chr4B 90.323 62 2 3 849 910 14565685 14565628 1.770000e-10 78.7
38 TraesCS5D01G506700 chr2D 93.694 333 21 0 2214 2546 605563107 605562775 3.190000e-137 499.0
39 TraesCS5D01G506700 chrUn 99.095 221 2 0 3073 3293 479679219 479678999 1.200000e-106 398.0
40 TraesCS5D01G506700 chrUn 96.067 178 7 0 2863 3040 479679390 479679213 2.090000e-74 291.0
41 TraesCS5D01G506700 chr7A 93.865 163 8 2 5147 5308 451519972 451519811 1.650000e-60 244.0
42 TraesCS5D01G506700 chr7A 88.889 189 16 5 5147 5332 498937206 498937392 1.660000e-55 228.0
43 TraesCS5D01G506700 chr4D 92.442 172 11 2 5139 5309 64390640 64390470 1.650000e-60 244.0
44 TraesCS5D01G506700 chr7D 93.293 164 9 2 5146 5308 154186069 154185907 2.130000e-59 241.0
45 TraesCS5D01G506700 chr7D 92.771 166 10 2 5144 5308 397554913 397555077 7.680000e-59 239.0
46 TraesCS5D01G506700 chr5A 93.293 164 9 2 5147 5309 688327047 688327209 2.130000e-59 241.0
47 TraesCS5D01G506700 chr6B 93.252 163 9 2 5147 5308 481857851 481858012 7.680000e-59 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G506700 chr5D 532274014 532279941 5927 True 10948.000000 10948 100.000000 1 5928 1 chr5D.!!$R1 5927
1 TraesCS5D01G506700 chr5D 532271277 532272056 779 False 520.000000 520 79.323000 942 1713 1 chr5D.!!$F1 771
2 TraesCS5D01G506700 chr5B 671709411 671716352 6941 True 2152.650000 7649 92.882250 127 5928 4 chr5B.!!$R2 5801
3 TraesCS5D01G506700 chr5B 671487020 671488456 1436 False 913.500000 977 89.884000 942 2414 2 chr5B.!!$F2 1472
4 TraesCS5D01G506700 chr5B 671493732 671496746 3014 False 907.333333 1823 84.175000 2468 5800 3 chr5B.!!$F3 3332
5 TraesCS5D01G506700 chr5B 671503150 671507567 4417 False 542.500000 691 81.003250 1445 5039 4 chr5B.!!$F4 3594
6 TraesCS5D01G506700 chr5B 671706417 671707156 739 False 512.000000 512 79.630000 976 1713 1 chr5B.!!$F1 737
7 TraesCS5D01G506700 chr4A 639992988 639998285 5297 False 4085.500000 7424 95.922500 495 5928 2 chr4A.!!$F4 5433
8 TraesCS5D01G506700 chr4A 639954626 639955298 672 False 924.000000 924 91.336000 860 1540 1 chr4A.!!$F1 680
9 TraesCS5D01G506700 chr4A 639961919 639962457 538 False 785.000000 785 92.740000 860 1410 1 chr4A.!!$F2 550
10 TraesCS5D01G506700 chr4A 637193863 637194900 1037 True 760.000000 760 80.605000 3492 4505 1 chr4A.!!$R1 1013
11 TraesCS5D01G506700 chr4A 637203599 637204503 904 True 630.000000 630 79.855000 4108 5048 1 chr4A.!!$R2 940
12 TraesCS5D01G506700 chr4A 637228214 637229067 853 True 628.000000 628 80.482000 4200 5045 1 chr4A.!!$R3 845
13 TraesCS5D01G506700 chr4A 640002503 640003633 1130 False 529.000000 529 75.910000 983 2091 1 chr4A.!!$F3 1108
14 TraesCS5D01G506700 chr4A 639999957 640001161 1204 True 338.500000 518 80.158000 985 2150 2 chr4A.!!$R4 1165
15 TraesCS5D01G506700 chr4B 14529138 14533795 4657 True 1629.000000 2813 94.525250 934 5927 4 chr4B.!!$R2 4993
16 TraesCS5D01G506700 chr4B 15416545 15421296 4751 True 1081.666667 2819 95.466833 934 5927 6 chr4B.!!$R3 4993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 445 0.033504 CTCATCGGTAACCATCGGGG 59.966 60.0 0.0 0.0 44.81 5.73 F
511 1667 0.252558 TAGCGAAGAAGGGAAGGGGT 60.253 55.0 0.0 0.0 0.00 4.95 F
517 1673 0.412640 AGAAGGGAAGGGGTAGACGT 59.587 55.0 0.0 0.0 0.00 4.34 F
2915 4301 0.040157 TTGTCACGTAGGGTTCGACG 60.040 55.0 0.0 0.0 45.29 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 3672 6.896021 ACTATCCATATGTTACGCTACAGT 57.104 37.5 1.24 0.00 0.00 3.55 R
2752 4132 7.591006 TTTATAGTTACTAGTGCTTGCACAC 57.409 36.0 24.82 14.75 41.02 3.82 R
3159 4709 5.578727 CAGTTTTCTCTAAGAGACCATTCCG 59.421 44.0 0.00 0.00 38.51 4.30 R
5319 7968 0.550914 TGGATGGCCAAGGTATCACC 59.449 55.0 10.96 4.17 42.49 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.506398 ACAGGTGGTTGGGAAATTTAGG 58.494 45.455 0.00 0.00 0.00 2.69
23 24 2.233676 CAGGTGGTTGGGAAATTTAGGC 59.766 50.000 0.00 0.00 0.00 3.93
24 25 2.158234 AGGTGGTTGGGAAATTTAGGCA 60.158 45.455 0.00 0.00 0.00 4.75
25 26 2.635427 GGTGGTTGGGAAATTTAGGCAA 59.365 45.455 0.00 0.00 0.00 4.52
26 27 3.071747 GGTGGTTGGGAAATTTAGGCAAA 59.928 43.478 0.00 0.00 0.00 3.68
27 28 4.062293 GTGGTTGGGAAATTTAGGCAAAC 58.938 43.478 0.00 0.00 0.00 2.93
28 29 3.970640 TGGTTGGGAAATTTAGGCAAACT 59.029 39.130 0.00 0.00 0.00 2.66
29 30 4.202305 TGGTTGGGAAATTTAGGCAAACTG 60.202 41.667 0.00 0.00 0.00 3.16
30 31 3.676291 TGGGAAATTTAGGCAAACTGC 57.324 42.857 0.00 0.00 44.08 4.40
39 40 2.355009 GCAAACTGCAACCCAGCG 60.355 61.111 0.00 0.00 45.78 5.18
40 41 2.355009 CAAACTGCAACCCAGCGC 60.355 61.111 0.00 0.00 45.78 5.92
41 42 3.605664 AAACTGCAACCCAGCGCC 61.606 61.111 2.29 0.00 45.78 6.53
47 48 4.054825 CAACCCAGCGCCGCATTT 62.055 61.111 13.36 0.00 0.00 2.32
48 49 4.054825 AACCCAGCGCCGCATTTG 62.055 61.111 13.36 0.00 0.00 2.32
51 52 4.481112 CCAGCGCCGCATTTGGTC 62.481 66.667 13.36 0.00 0.00 4.02
52 53 3.434319 CAGCGCCGCATTTGGTCT 61.434 61.111 13.36 0.00 0.00 3.85
53 54 3.434319 AGCGCCGCATTTGGTCTG 61.434 61.111 13.36 0.00 0.00 3.51
55 56 4.481112 CGCCGCATTTGGTCTGCC 62.481 66.667 0.00 0.00 36.24 4.85
56 57 4.133796 GCCGCATTTGGTCTGCCC 62.134 66.667 0.00 0.00 36.24 5.36
57 58 3.451894 CCGCATTTGGTCTGCCCC 61.452 66.667 0.00 0.00 36.24 5.80
58 59 2.361610 CGCATTTGGTCTGCCCCT 60.362 61.111 0.00 0.00 36.24 4.79
59 60 2.703798 CGCATTTGGTCTGCCCCTG 61.704 63.158 0.00 0.00 36.24 4.45
60 61 1.607467 GCATTTGGTCTGCCCCTGT 60.607 57.895 0.00 0.00 33.44 4.00
61 62 1.187567 GCATTTGGTCTGCCCCTGTT 61.188 55.000 0.00 0.00 33.44 3.16
62 63 0.890683 CATTTGGTCTGCCCCTGTTC 59.109 55.000 0.00 0.00 0.00 3.18
63 64 0.482446 ATTTGGTCTGCCCCTGTTCA 59.518 50.000 0.00 0.00 0.00 3.18
64 65 0.482446 TTTGGTCTGCCCCTGTTCAT 59.518 50.000 0.00 0.00 0.00 2.57
65 66 0.482446 TTGGTCTGCCCCTGTTCATT 59.518 50.000 0.00 0.00 0.00 2.57
66 67 1.367346 TGGTCTGCCCCTGTTCATTA 58.633 50.000 0.00 0.00 0.00 1.90
67 68 1.004277 TGGTCTGCCCCTGTTCATTAC 59.996 52.381 0.00 0.00 0.00 1.89
68 69 1.369625 GTCTGCCCCTGTTCATTACG 58.630 55.000 0.00 0.00 0.00 3.18
69 70 0.251916 TCTGCCCCTGTTCATTACGG 59.748 55.000 0.00 0.00 0.00 4.02
70 71 0.035439 CTGCCCCTGTTCATTACGGT 60.035 55.000 0.00 0.00 0.00 4.83
71 72 0.035820 TGCCCCTGTTCATTACGGTC 60.036 55.000 0.00 0.00 0.00 4.79
72 73 1.087771 GCCCCTGTTCATTACGGTCG 61.088 60.000 0.00 0.00 0.00 4.79
73 74 0.533491 CCCCTGTTCATTACGGTCGA 59.467 55.000 0.00 0.00 0.00 4.20
74 75 1.470979 CCCCTGTTCATTACGGTCGAG 60.471 57.143 0.00 0.00 0.00 4.04
75 76 1.475280 CCCTGTTCATTACGGTCGAGA 59.525 52.381 0.00 0.00 0.00 4.04
76 77 2.527100 CCTGTTCATTACGGTCGAGAC 58.473 52.381 0.00 0.00 0.00 3.36
77 78 2.174764 CTGTTCATTACGGTCGAGACG 58.825 52.381 7.80 7.80 37.36 4.18
79 80 2.172365 GTTCATTACGGTCGAGACGTC 58.828 52.381 17.09 7.70 44.37 4.34
80 81 0.729116 TCATTACGGTCGAGACGTCC 59.271 55.000 17.09 2.76 44.37 4.79
81 82 0.448990 CATTACGGTCGAGACGTCCA 59.551 55.000 17.09 7.43 44.37 4.02
82 83 1.135603 CATTACGGTCGAGACGTCCAA 60.136 52.381 17.09 8.83 44.37 3.53
83 84 0.238289 TTACGGTCGAGACGTCCAAC 59.762 55.000 17.09 7.96 44.37 3.77
93 94 3.554692 CGTCCAACGCGAGGCATC 61.555 66.667 15.93 7.42 33.65 3.91
94 95 2.125512 GTCCAACGCGAGGCATCT 60.126 61.111 15.93 0.00 0.00 2.90
95 96 2.125552 TCCAACGCGAGGCATCTG 60.126 61.111 15.93 0.00 0.00 2.90
96 97 3.197790 CCAACGCGAGGCATCTGG 61.198 66.667 15.93 3.51 0.00 3.86
97 98 3.869272 CAACGCGAGGCATCTGGC 61.869 66.667 15.93 0.00 40.66 4.85
102 103 3.126879 CGAGGCATCTGGCGCAAA 61.127 61.111 10.83 0.00 46.16 3.68
103 104 2.689785 CGAGGCATCTGGCGCAAAA 61.690 57.895 10.83 0.00 46.16 2.44
104 105 1.811860 GAGGCATCTGGCGCAAAAT 59.188 52.632 10.83 0.00 46.16 1.82
105 106 1.024271 GAGGCATCTGGCGCAAAATA 58.976 50.000 10.83 0.00 46.16 1.40
106 107 0.740737 AGGCATCTGGCGCAAAATAC 59.259 50.000 10.83 0.00 46.16 1.89
107 108 0.249031 GGCATCTGGCGCAAAATACC 60.249 55.000 10.83 0.00 46.16 2.73
108 109 0.592247 GCATCTGGCGCAAAATACCG 60.592 55.000 10.83 0.00 0.00 4.02
109 110 0.732571 CATCTGGCGCAAAATACCGT 59.267 50.000 10.83 0.00 0.00 4.83
110 111 1.014352 ATCTGGCGCAAAATACCGTC 58.986 50.000 10.83 0.00 0.00 4.79
111 112 1.022451 TCTGGCGCAAAATACCGTCC 61.022 55.000 10.83 0.00 0.00 4.79
112 113 1.988834 CTGGCGCAAAATACCGTCCC 61.989 60.000 10.83 0.00 0.00 4.46
113 114 2.767445 GGCGCAAAATACCGTCCCC 61.767 63.158 10.83 0.00 0.00 4.81
114 115 2.041686 GCGCAAAATACCGTCCCCA 61.042 57.895 0.30 0.00 0.00 4.96
115 116 1.381165 GCGCAAAATACCGTCCCCAT 61.381 55.000 0.30 0.00 0.00 4.00
116 117 1.099689 CGCAAAATACCGTCCCCATT 58.900 50.000 0.00 0.00 0.00 3.16
117 118 1.474879 CGCAAAATACCGTCCCCATTT 59.525 47.619 0.00 0.00 0.00 2.32
118 119 2.478879 CGCAAAATACCGTCCCCATTTC 60.479 50.000 0.00 0.00 0.00 2.17
119 120 2.159156 GCAAAATACCGTCCCCATTTCC 60.159 50.000 0.00 0.00 0.00 3.13
120 121 3.093057 CAAAATACCGTCCCCATTTCCA 58.907 45.455 0.00 0.00 0.00 3.53
121 122 2.729028 AATACCGTCCCCATTTCCAG 57.271 50.000 0.00 0.00 0.00 3.86
122 123 0.182775 ATACCGTCCCCATTTCCAGC 59.817 55.000 0.00 0.00 0.00 4.85
123 124 2.246761 TACCGTCCCCATTTCCAGCG 62.247 60.000 0.00 0.00 0.00 5.18
124 125 3.508840 CGTCCCCATTTCCAGCGC 61.509 66.667 0.00 0.00 0.00 5.92
125 126 2.361104 GTCCCCATTTCCAGCGCA 60.361 61.111 11.47 0.00 0.00 6.09
132 133 2.160022 CCCATTTCCAGCGCAAAATTTG 59.840 45.455 11.47 0.57 0.00 2.32
135 136 2.147436 TTCCAGCGCAAAATTTGGAC 57.853 45.000 11.47 0.00 39.32 4.02
138 139 0.039617 CAGCGCAAAATTTGGACCGA 60.040 50.000 11.47 0.00 0.00 4.69
144 145 3.664014 CGCAAAATTTGGACCGAATTTGC 60.664 43.478 26.49 26.05 37.47 3.68
146 147 3.378911 AAATTTGGACCGAATTTGCGT 57.621 38.095 25.58 7.32 36.45 5.24
150 151 0.535328 TGGACCGAATTTGCGTCCAA 60.535 50.000 23.40 13.17 37.99 3.53
170 171 1.050988 ACGGACTCTGGATGGATGGG 61.051 60.000 0.00 0.00 0.00 4.00
171 172 0.760567 CGGACTCTGGATGGATGGGA 60.761 60.000 0.00 0.00 0.00 4.37
173 174 0.396060 GACTCTGGATGGATGGGAGC 59.604 60.000 0.00 0.00 0.00 4.70
185 186 3.827898 GGGAGCGTGTCCTCTCGG 61.828 72.222 6.00 0.00 46.06 4.63
190 191 2.567049 CGTGTCCTCTCGGTGTCC 59.433 66.667 0.00 0.00 0.00 4.02
211 224 1.961277 CTGTCAGCCGTCCAACCAC 60.961 63.158 0.00 0.00 0.00 4.16
218 231 1.599797 CCGTCCAACCACTTCCCAC 60.600 63.158 0.00 0.00 0.00 4.61
219 232 1.450211 CGTCCAACCACTTCCCACT 59.550 57.895 0.00 0.00 0.00 4.00
220 233 0.884704 CGTCCAACCACTTCCCACTG 60.885 60.000 0.00 0.00 0.00 3.66
234 247 3.197983 TCCCACTGGACCCATTTAATCT 58.802 45.455 0.00 0.00 35.03 2.40
240 253 2.026729 TGGACCCATTTAATCTGACGCA 60.027 45.455 0.00 0.00 0.00 5.24
245 258 3.003689 CCCATTTAATCTGACGCATGGAC 59.996 47.826 0.00 0.00 34.21 4.02
308 321 2.131776 TTTTATGGCTAACCCCCGTG 57.868 50.000 0.00 0.00 33.59 4.94
345 358 2.052157 CACTTCTCCACTTTCGTCGTC 58.948 52.381 0.00 0.00 0.00 4.20
349 362 2.228059 TCTCCACTTTCGTCGTCTTCT 58.772 47.619 0.00 0.00 0.00 2.85
367 380 2.832838 TCTACAATCTTCCTCTGCCCA 58.167 47.619 0.00 0.00 0.00 5.36
374 387 2.416107 CTTCCTCTGCCCACCAAGCA 62.416 60.000 0.00 0.00 38.82 3.91
417 430 1.695597 CCCAAGCTCCTCCCCTCAT 60.696 63.158 0.00 0.00 0.00 2.90
421 434 2.444895 GCTCCTCCCCTCATCGGT 60.445 66.667 0.00 0.00 0.00 4.69
432 445 0.033504 CTCATCGGTAACCATCGGGG 59.966 60.000 0.00 0.00 44.81 5.73
433 446 0.397394 TCATCGGTAACCATCGGGGA 60.397 55.000 0.84 0.00 41.15 4.81
434 447 0.685097 CATCGGTAACCATCGGGGAT 59.315 55.000 0.84 0.00 41.15 3.85
458 471 2.844348 GGAAGTGGATCCCTGGAAAGTA 59.156 50.000 9.90 0.00 33.05 2.24
465 478 1.961133 TCCCTGGAAAGTACGGGAAT 58.039 50.000 1.78 0.00 42.54 3.01
484 497 4.096003 ACGACCATGAAGCGGGGG 62.096 66.667 0.00 0.00 0.00 5.40
493 506 4.772231 AAGCGGGGGCGTCCTCTA 62.772 66.667 3.42 0.00 35.33 2.43
500 1656 2.119655 GGGCGTCCTCTAGCGAAGA 61.120 63.158 0.00 0.00 0.00 2.87
501 1657 1.664321 GGGCGTCCTCTAGCGAAGAA 61.664 60.000 0.00 0.00 32.46 2.52
511 1667 0.252558 TAGCGAAGAAGGGAAGGGGT 60.253 55.000 0.00 0.00 0.00 4.95
517 1673 0.412640 AGAAGGGAAGGGGTAGACGT 59.587 55.000 0.00 0.00 0.00 4.34
594 1752 5.152623 TGTACAAAGAACAGAGGAGGATG 57.847 43.478 0.00 0.00 0.00 3.51
598 1756 4.533707 ACAAAGAACAGAGGAGGATGATCA 59.466 41.667 0.00 0.00 0.00 2.92
656 1819 0.972883 TGACGGTGTGATCATGGTCA 59.027 50.000 4.01 4.01 36.78 4.02
768 1933 9.756571 ACTACCTCCGTATCAGAATATAAGATT 57.243 33.333 0.00 0.00 0.00 2.40
821 2000 6.708285 ACACGGAAGGAGTATCTATGTTTTT 58.292 36.000 0.00 0.00 33.73 1.94
881 2061 6.376299 TCCAAATGGATTCATCAACAGAAGAG 59.624 38.462 0.00 0.00 39.78 2.85
1237 2487 1.668151 AACTGGAAAGACGAGCGCC 60.668 57.895 2.29 0.00 0.00 6.53
1865 3161 4.860022 CTCATATTGTGGAAAAGGGAGGT 58.140 43.478 0.00 0.00 0.00 3.85
1956 3282 0.685785 TTCCAGTGTTGGGCTTTGCA 60.686 50.000 0.00 0.00 45.10 4.08
2245 3573 1.952296 GGTGCAAGGCTATCAATGAGG 59.048 52.381 0.00 0.00 0.00 3.86
2344 3672 4.793201 TGTTCTCCTAGCTAGACATGCTA 58.207 43.478 22.70 0.23 41.46 3.49
2752 4132 9.605275 TCTTCCTCAGATTTGTACTTCATAATG 57.395 33.333 0.00 0.00 0.00 1.90
2915 4301 0.040157 TTGTCACGTAGGGTTCGACG 60.040 55.000 0.00 0.00 45.29 5.12
3159 4709 7.713764 ATTTTGCATTGTTCTTCAGGTTTAC 57.286 32.000 0.00 0.00 0.00 2.01
3322 4992 9.158233 GATAACACTACTGGTTGCAATAAGTTA 57.842 33.333 18.59 11.36 0.00 2.24
3842 6212 6.407074 GCTATCTCAGTTACCATGTGTTAGGT 60.407 42.308 0.00 0.00 41.89 3.08
3910 6280 2.495270 GAGGACAGAGACAGCTCAATCA 59.505 50.000 0.00 0.00 43.81 2.57
3930 6300 8.559536 TCAATCAGTTACTACTTTGAAGCTTTG 58.440 33.333 0.00 0.00 31.45 2.77
4046 6431 9.967346 TGTATAGTAGTAGAACAAATCAGCATC 57.033 33.333 0.00 0.00 0.00 3.91
4367 6934 4.813750 ATCTGAAAATTGCCAAGGAAGG 57.186 40.909 0.00 0.00 0.00 3.46
4837 7428 4.070716 ACTTTGAGATTGTTGGCAGAGAG 58.929 43.478 0.00 0.00 0.00 3.20
5155 7804 5.488919 TCATCCATTGTTTTCTACTCCCTCT 59.511 40.000 0.00 0.00 0.00 3.69
5306 7955 8.935741 AGATTTATATTTAGAAACGGAGGGAGT 58.064 33.333 0.00 0.00 0.00 3.85
5319 7968 1.464997 GAGGGAGTAGCTGTTTTTGCG 59.535 52.381 0.00 0.00 35.28 4.85
5444 8136 4.558860 GCGAAACCATTAGCAAAACTCATC 59.441 41.667 0.00 0.00 37.16 2.92
5778 8665 2.347846 GCAAACAAATGCACAGCGAAAG 60.348 45.455 0.00 0.00 45.70 2.62
5847 8735 0.181350 GCCAAGGATGTAGGTGAGGG 59.819 60.000 0.00 0.00 0.00 4.30
5923 8813 2.728817 CCGTAGATGGGCTCGTCC 59.271 66.667 0.97 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.901222 CCTAAATTTCCCAACCACCTGTT 59.099 43.478 0.00 0.00 37.80 3.16
1 2 3.506398 CCTAAATTTCCCAACCACCTGT 58.494 45.455 0.00 0.00 0.00 4.00
2 3 2.233676 GCCTAAATTTCCCAACCACCTG 59.766 50.000 0.00 0.00 0.00 4.00
3 4 2.158234 TGCCTAAATTTCCCAACCACCT 60.158 45.455 0.00 0.00 0.00 4.00
4 5 2.252714 TGCCTAAATTTCCCAACCACC 58.747 47.619 0.00 0.00 0.00 4.61
8 9 3.745975 GCAGTTTGCCTAAATTTCCCAAC 59.254 43.478 0.00 0.00 37.42 3.77
10 11 2.968574 TGCAGTTTGCCTAAATTTCCCA 59.031 40.909 0.00 0.00 44.23 4.37
11 12 3.676291 TGCAGTTTGCCTAAATTTCCC 57.324 42.857 0.00 0.00 44.23 3.97
12 13 3.745975 GGTTGCAGTTTGCCTAAATTTCC 59.254 43.478 0.00 0.00 44.23 3.13
13 14 3.745975 GGGTTGCAGTTTGCCTAAATTTC 59.254 43.478 0.00 0.00 44.23 2.17
14 15 3.135530 TGGGTTGCAGTTTGCCTAAATTT 59.864 39.130 0.00 0.00 44.23 1.82
15 16 2.703007 TGGGTTGCAGTTTGCCTAAATT 59.297 40.909 0.00 0.00 44.23 1.82
16 17 2.299867 CTGGGTTGCAGTTTGCCTAAAT 59.700 45.455 0.00 0.00 44.23 1.40
17 18 1.686052 CTGGGTTGCAGTTTGCCTAAA 59.314 47.619 0.00 0.00 44.23 1.85
18 19 1.327303 CTGGGTTGCAGTTTGCCTAA 58.673 50.000 0.00 0.00 44.23 2.69
19 20 1.178534 GCTGGGTTGCAGTTTGCCTA 61.179 55.000 0.00 0.00 44.23 3.93
20 21 2.501602 GCTGGGTTGCAGTTTGCCT 61.502 57.895 0.00 0.00 44.23 4.75
21 22 2.029518 GCTGGGTTGCAGTTTGCC 59.970 61.111 0.00 0.00 44.23 4.52
22 23 2.355009 CGCTGGGTTGCAGTTTGC 60.355 61.111 0.00 0.00 45.29 3.68
23 24 2.355009 GCGCTGGGTTGCAGTTTG 60.355 61.111 0.00 0.00 0.00 2.93
24 25 3.605664 GGCGCTGGGTTGCAGTTT 61.606 61.111 7.64 0.00 0.00 2.66
30 31 4.054825 AAATGCGGCGCTGGGTTG 62.055 61.111 33.26 0.00 0.00 3.77
31 32 4.054825 CAAATGCGGCGCTGGGTT 62.055 61.111 33.26 18.42 0.00 4.11
34 35 4.481112 GACCAAATGCGGCGCTGG 62.481 66.667 33.26 31.33 34.95 4.85
35 36 3.434319 AGACCAAATGCGGCGCTG 61.434 61.111 33.26 22.21 0.00 5.18
36 37 3.434319 CAGACCAAATGCGGCGCT 61.434 61.111 33.26 15.71 0.00 5.92
38 39 4.481112 GGCAGACCAAATGCGGCG 62.481 66.667 0.51 0.51 44.80 6.46
39 40 4.133796 GGGCAGACCAAATGCGGC 62.134 66.667 0.00 0.00 44.80 6.53
40 41 3.451894 GGGGCAGACCAAATGCGG 61.452 66.667 0.00 0.00 44.80 5.69
41 42 2.361610 AGGGGCAGACCAAATGCG 60.362 61.111 0.00 0.00 44.80 4.73
42 43 1.187567 AACAGGGGCAGACCAAATGC 61.188 55.000 0.00 0.00 42.91 3.56
43 44 0.890683 GAACAGGGGCAGACCAAATG 59.109 55.000 0.00 0.00 42.91 2.32
44 45 0.482446 TGAACAGGGGCAGACCAAAT 59.518 50.000 0.00 0.00 42.91 2.32
45 46 0.482446 ATGAACAGGGGCAGACCAAA 59.518 50.000 0.00 0.00 42.91 3.28
46 47 0.482446 AATGAACAGGGGCAGACCAA 59.518 50.000 0.00 0.00 42.91 3.67
47 48 1.004277 GTAATGAACAGGGGCAGACCA 59.996 52.381 0.00 0.00 42.91 4.02
48 49 1.751437 GTAATGAACAGGGGCAGACC 58.249 55.000 0.00 0.00 39.11 3.85
49 50 1.369625 CGTAATGAACAGGGGCAGAC 58.630 55.000 0.00 0.00 0.00 3.51
50 51 0.251916 CCGTAATGAACAGGGGCAGA 59.748 55.000 0.00 0.00 0.00 4.26
51 52 0.035439 ACCGTAATGAACAGGGGCAG 60.035 55.000 0.00 0.00 0.00 4.85
52 53 0.035820 GACCGTAATGAACAGGGGCA 60.036 55.000 0.00 0.00 0.00 5.36
53 54 1.087771 CGACCGTAATGAACAGGGGC 61.088 60.000 0.00 0.00 0.00 5.80
54 55 0.533491 TCGACCGTAATGAACAGGGG 59.467 55.000 0.00 0.00 0.00 4.79
55 56 1.475280 TCTCGACCGTAATGAACAGGG 59.525 52.381 0.00 0.00 0.00 4.45
56 57 2.527100 GTCTCGACCGTAATGAACAGG 58.473 52.381 0.00 0.00 0.00 4.00
57 58 2.174764 CGTCTCGACCGTAATGAACAG 58.825 52.381 0.00 0.00 0.00 3.16
58 59 1.536766 ACGTCTCGACCGTAATGAACA 59.463 47.619 3.71 0.00 36.65 3.18
59 60 2.172365 GACGTCTCGACCGTAATGAAC 58.828 52.381 8.70 0.00 38.92 3.18
60 61 1.131126 GGACGTCTCGACCGTAATGAA 59.869 52.381 16.46 0.00 38.92 2.57
61 62 0.729116 GGACGTCTCGACCGTAATGA 59.271 55.000 16.46 0.00 38.92 2.57
62 63 0.448990 TGGACGTCTCGACCGTAATG 59.551 55.000 16.46 0.00 43.79 1.90
63 64 1.135575 GTTGGACGTCTCGACCGTAAT 60.136 52.381 16.46 0.00 43.79 1.89
64 65 0.238289 GTTGGACGTCTCGACCGTAA 59.762 55.000 16.46 0.00 43.79 3.18
65 66 1.868997 GTTGGACGTCTCGACCGTA 59.131 57.895 16.46 0.00 43.79 4.02
66 67 2.641559 GTTGGACGTCTCGACCGT 59.358 61.111 16.46 5.16 43.79 4.83
67 68 2.501222 CGTTGGACGTCTCGACCG 60.501 66.667 16.46 7.31 43.79 4.79
68 69 2.804090 GCGTTGGACGTCTCGACC 60.804 66.667 23.54 7.71 44.73 4.79
69 70 3.164011 CGCGTTGGACGTCTCGAC 61.164 66.667 23.54 18.04 44.73 4.20
70 71 3.304764 CTCGCGTTGGACGTCTCGA 62.305 63.158 23.54 18.29 44.73 4.04
71 72 2.870161 CTCGCGTTGGACGTCTCG 60.870 66.667 16.46 17.55 44.73 4.04
72 73 2.504244 CCTCGCGTTGGACGTCTC 60.504 66.667 16.46 6.30 44.73 3.36
73 74 4.719369 GCCTCGCGTTGGACGTCT 62.719 66.667 21.17 0.00 44.73 4.18
75 76 4.373116 ATGCCTCGCGTTGGACGT 62.373 61.111 21.17 12.31 44.73 4.34
76 77 3.554692 GATGCCTCGCGTTGGACG 61.555 66.667 21.17 0.00 45.88 4.79
77 78 2.125512 AGATGCCTCGCGTTGGAC 60.126 61.111 21.17 13.78 0.00 4.02
78 79 2.125552 CAGATGCCTCGCGTTGGA 60.126 61.111 21.17 9.35 0.00 3.53
79 80 3.197790 CCAGATGCCTCGCGTTGG 61.198 66.667 5.77 11.37 0.00 3.77
80 81 3.869272 GCCAGATGCCTCGCGTTG 61.869 66.667 5.77 0.00 0.00 4.10
85 86 1.996786 ATTTTGCGCCAGATGCCTCG 61.997 55.000 4.18 0.00 36.24 4.63
86 87 1.024271 TATTTTGCGCCAGATGCCTC 58.976 50.000 4.18 0.00 36.24 4.70
87 88 0.740737 GTATTTTGCGCCAGATGCCT 59.259 50.000 4.18 0.00 36.24 4.75
88 89 0.249031 GGTATTTTGCGCCAGATGCC 60.249 55.000 4.18 3.81 36.24 4.40
89 90 0.592247 CGGTATTTTGCGCCAGATGC 60.592 55.000 4.18 0.00 0.00 3.91
90 91 0.732571 ACGGTATTTTGCGCCAGATG 59.267 50.000 4.18 0.00 0.00 2.90
91 92 1.014352 GACGGTATTTTGCGCCAGAT 58.986 50.000 4.18 0.00 0.00 2.90
92 93 1.022451 GGACGGTATTTTGCGCCAGA 61.022 55.000 4.18 0.00 0.00 3.86
93 94 1.427819 GGACGGTATTTTGCGCCAG 59.572 57.895 4.18 0.00 0.00 4.85
94 95 2.041686 GGGACGGTATTTTGCGCCA 61.042 57.895 4.18 0.00 0.00 5.69
95 96 2.767445 GGGGACGGTATTTTGCGCC 61.767 63.158 4.18 0.00 0.00 6.53
96 97 1.381165 ATGGGGACGGTATTTTGCGC 61.381 55.000 0.00 0.00 0.00 6.09
97 98 1.099689 AATGGGGACGGTATTTTGCG 58.900 50.000 0.00 0.00 0.00 4.85
98 99 2.159156 GGAAATGGGGACGGTATTTTGC 60.159 50.000 0.00 0.00 0.00 3.68
99 100 3.093057 TGGAAATGGGGACGGTATTTTG 58.907 45.455 0.00 0.00 0.00 2.44
100 101 3.361786 CTGGAAATGGGGACGGTATTTT 58.638 45.455 0.00 0.00 0.00 1.82
101 102 2.948600 GCTGGAAATGGGGACGGTATTT 60.949 50.000 0.00 0.00 0.00 1.40
102 103 1.409661 GCTGGAAATGGGGACGGTATT 60.410 52.381 0.00 0.00 0.00 1.89
103 104 0.182775 GCTGGAAATGGGGACGGTAT 59.817 55.000 0.00 0.00 0.00 2.73
104 105 1.605453 GCTGGAAATGGGGACGGTA 59.395 57.895 0.00 0.00 0.00 4.02
105 106 2.355115 GCTGGAAATGGGGACGGT 59.645 61.111 0.00 0.00 0.00 4.83
106 107 2.824041 CGCTGGAAATGGGGACGG 60.824 66.667 0.00 0.00 0.00 4.79
107 108 3.508840 GCGCTGGAAATGGGGACG 61.509 66.667 0.00 0.00 0.00 4.79
108 109 1.531739 TTTGCGCTGGAAATGGGGAC 61.532 55.000 9.73 0.00 0.00 4.46
109 110 0.829602 TTTTGCGCTGGAAATGGGGA 60.830 50.000 9.73 0.00 0.00 4.81
110 111 0.249955 ATTTTGCGCTGGAAATGGGG 59.750 50.000 9.73 0.00 0.00 4.96
111 112 2.097680 AATTTTGCGCTGGAAATGGG 57.902 45.000 9.73 0.00 0.00 4.00
112 113 2.160022 CCAAATTTTGCGCTGGAAATGG 59.840 45.455 9.73 7.19 0.00 3.16
113 114 3.065655 TCCAAATTTTGCGCTGGAAATG 58.934 40.909 9.73 1.16 35.02 2.32
114 115 3.066380 GTCCAAATTTTGCGCTGGAAAT 58.934 40.909 14.61 12.02 39.62 2.17
115 116 2.478831 GTCCAAATTTTGCGCTGGAAA 58.521 42.857 14.61 10.36 39.62 3.13
116 117 1.270041 GGTCCAAATTTTGCGCTGGAA 60.270 47.619 14.61 4.42 39.62 3.53
117 118 0.316841 GGTCCAAATTTTGCGCTGGA 59.683 50.000 9.73 9.62 35.58 3.86
118 119 1.008361 CGGTCCAAATTTTGCGCTGG 61.008 55.000 9.73 6.90 0.00 4.85
119 120 0.039617 TCGGTCCAAATTTTGCGCTG 60.040 50.000 9.73 0.00 0.00 5.18
120 121 0.671251 TTCGGTCCAAATTTTGCGCT 59.329 45.000 9.73 0.00 0.00 5.92
121 122 1.708822 ATTCGGTCCAAATTTTGCGC 58.291 45.000 0.00 0.00 0.00 6.09
122 123 3.664014 GCAAATTCGGTCCAAATTTTGCG 60.664 43.478 13.53 2.90 34.84 4.85
123 124 3.664014 CGCAAATTCGGTCCAAATTTTGC 60.664 43.478 16.43 16.43 34.84 3.68
124 125 3.492756 ACGCAAATTCGGTCCAAATTTTG 59.507 39.130 0.00 1.99 34.84 2.44
125 126 3.723260 ACGCAAATTCGGTCCAAATTTT 58.277 36.364 0.00 0.00 34.84 1.82
132 133 0.594110 TTTGGACGCAAATTCGGTCC 59.406 50.000 13.00 13.00 33.44 4.46
135 136 2.707192 CGTTTGGACGCAAATTCGG 58.293 52.632 0.00 0.00 43.03 4.30
146 147 0.613260 CCATCCAGAGTCCGTTTGGA 59.387 55.000 1.61 1.61 44.52 3.53
150 151 0.833287 CCATCCATCCAGAGTCCGTT 59.167 55.000 0.00 0.00 0.00 4.44
163 164 2.284625 AGGACACGCTCCCATCCA 60.285 61.111 0.00 0.00 40.53 3.41
185 186 2.430921 CGGCTGACAGACGGACAC 60.431 66.667 23.44 0.00 44.58 3.67
192 193 2.137528 TGGTTGGACGGCTGACAGA 61.138 57.895 6.65 0.00 0.00 3.41
218 231 2.614057 GCGTCAGATTAAATGGGTCCAG 59.386 50.000 0.00 0.00 0.00 3.86
219 232 2.026729 TGCGTCAGATTAAATGGGTCCA 60.027 45.455 0.00 0.00 0.00 4.02
220 233 2.639065 TGCGTCAGATTAAATGGGTCC 58.361 47.619 0.00 0.00 0.00 4.46
292 305 2.912714 GCACGGGGGTTAGCCATA 59.087 61.111 1.94 0.00 36.17 2.74
317 330 2.390225 AGTGGAGAAGTGGACTGACT 57.610 50.000 0.00 0.00 0.00 3.41
319 332 2.035961 CGAAAGTGGAGAAGTGGACTGA 59.964 50.000 0.00 0.00 0.00 3.41
345 358 3.198635 TGGGCAGAGGAAGATTGTAGAAG 59.801 47.826 0.00 0.00 0.00 2.85
349 362 1.559682 GGTGGGCAGAGGAAGATTGTA 59.440 52.381 0.00 0.00 0.00 2.41
367 380 2.594592 GCTTGTCGGGTGCTTGGT 60.595 61.111 0.00 0.00 0.00 3.67
374 387 3.400054 GCCTAGGGCTTGTCGGGT 61.400 66.667 11.72 0.00 46.69 5.28
394 407 2.352805 GGAGGAGCTTGGGTGGTG 59.647 66.667 0.00 0.00 0.00 4.17
395 408 2.936032 GGGAGGAGCTTGGGTGGT 60.936 66.667 0.00 0.00 0.00 4.16
402 415 1.764054 CCGATGAGGGGAGGAGCTT 60.764 63.158 0.00 0.00 35.97 3.74
417 430 0.688418 ACATCCCCGATGGTTACCGA 60.688 55.000 6.58 0.00 43.60 4.69
421 434 1.488812 CTTCCACATCCCCGATGGTTA 59.511 52.381 6.58 0.00 43.60 2.85
432 445 1.133976 CCAGGGATCCACTTCCACATC 60.134 57.143 15.23 0.00 37.53 3.06
433 446 0.921896 CCAGGGATCCACTTCCACAT 59.078 55.000 15.23 0.00 37.53 3.21
434 447 0.178876 TCCAGGGATCCACTTCCACA 60.179 55.000 15.23 0.00 37.53 4.17
458 471 0.611200 TTCATGGTCGTGATTCCCGT 59.389 50.000 0.00 0.00 0.00 5.28
465 478 2.264480 CCCGCTTCATGGTCGTGA 59.736 61.111 0.00 0.00 0.00 4.35
484 497 0.248702 CCTTCTTCGCTAGAGGACGC 60.249 60.000 0.00 0.00 31.87 5.19
486 499 1.765230 TCCCTTCTTCGCTAGAGGAC 58.235 55.000 0.00 0.00 31.87 3.85
493 506 0.252558 TACCCCTTCCCTTCTTCGCT 60.253 55.000 0.00 0.00 0.00 4.93
500 1656 1.203275 AGAACGTCTACCCCTTCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
501 1657 0.412640 AGAACGTCTACCCCTTCCCT 59.587 55.000 0.00 0.00 0.00 4.20
548 1706 7.223582 ACAATCATGACAGTTGACGAATAGATC 59.776 37.037 13.20 0.00 0.00 2.75
557 1715 7.189693 TCTTTGTACAATCATGACAGTTGAC 57.810 36.000 9.56 8.19 0.00 3.18
633 1792 1.362768 CATGATCACACCGTCACTGG 58.637 55.000 0.00 0.00 0.00 4.00
635 1797 0.976641 ACCATGATCACACCGTCACT 59.023 50.000 0.00 0.00 0.00 3.41
636 1798 1.337728 TGACCATGATCACACCGTCAC 60.338 52.381 0.00 0.00 34.58 3.67
637 1799 0.972883 TGACCATGATCACACCGTCA 59.027 50.000 0.00 4.76 36.04 4.35
638 1800 2.315925 ATGACCATGATCACACCGTC 57.684 50.000 0.00 1.98 0.00 4.79
639 1801 2.358957 CAATGACCATGATCACACCGT 58.641 47.619 0.00 0.00 0.00 4.83
640 1802 1.672363 CCAATGACCATGATCACACCG 59.328 52.381 0.00 0.00 0.00 4.94
641 1803 3.003394 TCCAATGACCATGATCACACC 57.997 47.619 0.00 0.00 0.00 4.16
726 1891 9.578576 ACGGAGGTAGTATATGTATAGAAAACA 57.421 33.333 0.00 0.00 0.00 2.83
798 1977 6.816640 TCAAAAACATAGATACTCCTTCCGTG 59.183 38.462 0.00 0.00 0.00 4.94
821 2000 4.082787 GCGGAGTCCATTTGAAAATTCTCA 60.083 41.667 10.49 0.00 0.00 3.27
830 2009 0.690192 TTCCTGCGGAGTCCATTTGA 59.310 50.000 10.49 0.00 31.21 2.69
911 2117 3.604875 GAACTGGGAATGGTTCGACTA 57.395 47.619 0.00 0.00 33.69 2.59
932 2138 0.744771 GGCTCAACCAGATCGGAACC 60.745 60.000 10.05 0.00 38.86 3.62
1200 2450 2.922503 TGGAGGAAGCCGAGCACA 60.923 61.111 0.00 0.00 0.00 4.57
2344 3672 6.896021 ACTATCCATATGTTACGCTACAGT 57.104 37.500 1.24 0.00 0.00 3.55
2752 4132 7.591006 TTTATAGTTACTAGTGCTTGCACAC 57.409 36.000 24.82 14.75 41.02 3.82
3159 4709 5.578727 CAGTTTTCTCTAAGAGACCATTCCG 59.421 44.000 0.00 0.00 38.51 4.30
3322 4992 6.124340 TCATTAGGCATGAACAGACAATGAT 58.876 36.000 0.00 0.00 39.11 2.45
3362 5034 4.873827 TGGGCAAATTACTGATACGAAGTC 59.126 41.667 0.00 0.00 43.93 3.01
3368 5040 3.636300 TGGCATGGGCAAATTACTGATAC 59.364 43.478 0.00 0.00 43.71 2.24
3506 5665 0.607489 GATGCACACAGCCCAAGAGT 60.607 55.000 0.00 0.00 44.83 3.24
3910 6280 4.213482 CGCCAAAGCTTCAAAGTAGTAACT 59.787 41.667 0.00 0.00 35.17 2.24
3930 6300 1.818674 ACCAAATGTTCCAAGATCGCC 59.181 47.619 0.00 0.00 0.00 5.54
4173 6650 8.462016 AGACCTAATCATAACAAAACAGCATTC 58.538 33.333 0.00 0.00 0.00 2.67
4367 6934 5.453567 AAGGTCTTTATCAGCCAACAAAC 57.546 39.130 0.00 0.00 0.00 2.93
4837 7428 5.052040 CGACTCATCTTTAGCTCGTTTCATC 60.052 44.000 0.00 0.00 0.00 2.92
5306 7955 2.745281 GGTATCACCGCAAAAACAGCTA 59.255 45.455 0.00 0.00 0.00 3.32
5319 7968 0.550914 TGGATGGCCAAGGTATCACC 59.449 55.000 10.96 4.17 42.49 4.02
5772 8659 7.005062 TCAGCTTAATTCATTCTACTTTCGC 57.995 36.000 0.00 0.00 0.00 4.70
5774 8661 8.897752 ACCATCAGCTTAATTCATTCTACTTTC 58.102 33.333 0.00 0.00 0.00 2.62
5778 8665 9.277783 ACATACCATCAGCTTAATTCATTCTAC 57.722 33.333 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.