Multiple sequence alignment - TraesCS5D01G504700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G504700 chr5D 100.000 2825 0 0 1 2825 530875115 530872291 0.000000e+00 5217.0
1 TraesCS5D01G504700 chr5D 96.471 85 3 0 294 378 548003508 548003592 1.060000e-29 141.0
2 TraesCS5D01G504700 chr5B 86.160 1250 83 30 288 1469 670118944 670117717 0.000000e+00 1267.0
3 TraesCS5D01G504700 chr5B 86.092 870 80 23 1487 2344 670117727 670116887 0.000000e+00 898.0
4 TraesCS5D01G504700 chr5B 87.206 383 48 1 384 766 680543296 680543677 4.320000e-118 435.0
5 TraesCS5D01G504700 chr4A 87.500 1000 63 29 1487 2461 641401391 641402353 0.000000e+00 1098.0
6 TraesCS5D01G504700 chr4A 90.831 349 24 5 966 1308 641400865 641401211 7.130000e-126 460.0
7 TraesCS5D01G504700 chr2D 83.037 507 49 21 1577 2059 539429536 539429043 2.600000e-115 425.0
8 TraesCS5D01G504700 chr2D 86.544 327 26 12 994 1302 539430242 539429916 7.490000e-91 344.0
9 TraesCS5D01G504700 chr2D 93.220 59 3 1 2664 2722 20551926 20551983 5.010000e-13 86.1
10 TraesCS5D01G504700 chr2D 93.220 59 3 1 2664 2722 395183757 395183700 5.010000e-13 86.1
11 TraesCS5D01G504700 chr2B 82.480 508 54 21 1573 2059 643685276 643684783 2.030000e-111 412.0
12 TraesCS5D01G504700 chr2B 85.846 325 22 13 994 1294 643685963 643685639 9.760000e-85 324.0
13 TraesCS5D01G504700 chr2B 93.548 93 5 1 297 388 548943725 548943817 1.360000e-28 137.0
14 TraesCS5D01G504700 chr2A 82.249 507 52 23 1577 2059 683014092 683013600 1.220000e-108 403.0
15 TraesCS5D01G504700 chr2A 87.147 319 23 13 994 1294 683014794 683014476 2.080000e-91 346.0
16 TraesCS5D01G504700 chr2A 81.579 190 27 7 2475 2664 83418111 83417930 1.750000e-32 150.0
17 TraesCS5D01G504700 chr2A 92.708 96 5 1 295 388 711885153 711885058 1.360000e-28 137.0
18 TraesCS5D01G504700 chr2A 88.889 54 2 3 1 53 68245852 68245902 2.350000e-06 63.9
19 TraesCS5D01G504700 chr5A 89.730 185 19 0 2480 2664 578233655 578233471 1.310000e-58 237.0
20 TraesCS5D01G504700 chr5A 89.247 186 18 2 2480 2664 631470103 631470287 6.090000e-57 231.0
21 TraesCS5D01G504700 chr5A 93.103 58 3 1 2665 2722 104242911 104242967 1.800000e-12 84.2
22 TraesCS5D01G504700 chr4D 90.000 180 16 2 2480 2658 69179749 69179571 6.090000e-57 231.0
23 TraesCS5D01G504700 chr4D 88.649 185 21 0 2480 2664 16920612 16920428 2.830000e-55 226.0
24 TraesCS5D01G504700 chr4D 88.649 185 21 0 2480 2664 69178228 69178044 2.830000e-55 226.0
25 TraesCS5D01G504700 chr4D 94.565 92 4 1 293 383 317189864 317189955 1.060000e-29 141.0
26 TraesCS5D01G504700 chr3A 89.189 185 20 0 2480 2664 743686321 743686137 6.090000e-57 231.0
27 TraesCS5D01G504700 chr3A 88.398 181 21 0 2480 2660 729764384 729764564 4.740000e-53 219.0
28 TraesCS5D01G504700 chr3A 75.978 179 31 10 384 558 479464870 479465040 6.490000e-12 82.4
29 TraesCS5D01G504700 chr3A 92.308 39 3 0 1 39 503822361 503822399 3.930000e-04 56.5
30 TraesCS5D01G504700 chr1D 89.189 185 20 0 2480 2664 339743292 339743476 6.090000e-57 231.0
31 TraesCS5D01G504700 chr1D 93.814 97 4 2 293 389 448689982 448689888 8.160000e-31 145.0
32 TraesCS5D01G504700 chr1D 93.220 59 3 1 2664 2722 170206338 170206395 5.010000e-13 86.1
33 TraesCS5D01G504700 chr3D 89.071 183 20 0 2482 2664 588164219 588164401 7.870000e-56 228.0
34 TraesCS5D01G504700 chr3D 96.512 86 3 0 297 382 455100659 455100574 2.930000e-30 143.0
35 TraesCS5D01G504700 chr3D 94.505 91 5 0 294 384 603266271 603266361 1.060000e-29 141.0
36 TraesCS5D01G504700 chr3D 92.308 39 3 0 4 42 379826270 379826232 3.930000e-04 56.5
37 TraesCS5D01G504700 chr7D 82.840 169 25 3 392 558 76408748 76408914 6.310000e-32 148.0
38 TraesCS5D01G504700 chr7D 94.828 58 2 1 2665 2722 157472931 157472987 3.880000e-14 89.8
39 TraesCS5D01G504700 chr7D 94.828 58 2 1 2665 2722 525007015 525006959 3.880000e-14 89.8
40 TraesCS5D01G504700 chr7D 90.385 52 4 1 1 51 438682713 438682764 1.820000e-07 67.6
41 TraesCS5D01G504700 chr7D 90.909 44 3 1 1 44 54050394 54050436 1.090000e-04 58.4
42 TraesCS5D01G504700 chr7D 96.875 32 1 0 1 32 595644136 595644167 1.000000e-03 54.7
43 TraesCS5D01G504700 chr3B 93.478 92 6 0 294 385 229298772 229298681 1.360000e-28 137.0
44 TraesCS5D01G504700 chr3B 94.828 58 2 1 2665 2722 417236032 417235976 3.880000e-14 89.8
45 TraesCS5D01G504700 chr3B 92.308 39 3 0 1 39 495475559 495475597 3.930000e-04 56.5
46 TraesCS5D01G504700 chr7A 94.828 58 2 1 2665 2722 721736895 721736951 3.880000e-14 89.8
47 TraesCS5D01G504700 chr7A 96.875 32 1 0 1 32 89041244 89041275 1.000000e-03 54.7
48 TraesCS5D01G504700 chr6D 93.220 59 3 1 2664 2722 357239083 357239140 5.010000e-13 86.1
49 TraesCS5D01G504700 chr6D 100.000 32 0 0 1 32 306429234 306429203 3.040000e-05 60.2
50 TraesCS5D01G504700 chrUn 75.978 179 31 10 384 558 40714816 40714986 6.490000e-12 82.4
51 TraesCS5D01G504700 chr7B 75.661 189 32 12 384 567 743484511 743484332 6.490000e-12 82.4
52 TraesCS5D01G504700 chr6B 75.401 187 36 8 375 558 550743940 550744119 6.490000e-12 82.4
53 TraesCS5D01G504700 chr4B 75.978 179 31 10 384 558 57964892 57965062 6.490000e-12 82.4
54 TraesCS5D01G504700 chr6A 75.419 179 32 10 384 558 11033766 11033936 3.020000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G504700 chr5D 530872291 530875115 2824 True 5217.0 5217 100.0000 1 2825 1 chr5D.!!$R1 2824
1 TraesCS5D01G504700 chr5B 670116887 670118944 2057 True 1082.5 1267 86.1260 288 2344 2 chr5B.!!$R1 2056
2 TraesCS5D01G504700 chr4A 641400865 641402353 1488 False 779.0 1098 89.1655 966 2461 2 chr4A.!!$F1 1495
3 TraesCS5D01G504700 chr2D 539429043 539430242 1199 True 384.5 425 84.7905 994 2059 2 chr2D.!!$R2 1065
4 TraesCS5D01G504700 chr2B 643684783 643685963 1180 True 368.0 412 84.1630 994 2059 2 chr2B.!!$R1 1065
5 TraesCS5D01G504700 chr2A 683013600 683014794 1194 True 374.5 403 84.6980 994 2059 2 chr2A.!!$R3 1065
6 TraesCS5D01G504700 chr4D 69178044 69179749 1705 True 228.5 231 89.3245 2480 2664 2 chr4D.!!$R2 184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.107017 TTAGTACTCCCTCCGTCCCG 60.107 60.0 0.0 0.0 0.00 5.14 F
509 510 0.317436 CCTAGAGCGTGCTTAGCGAG 60.317 60.0 0.0 0.0 40.04 5.03 F
875 900 0.452452 GACACCGTCTCGAACTCGTC 60.452 60.0 0.0 0.0 40.80 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1295 0.099968 CGATCTCGCCTTCCGTGTAA 59.900 55.0 0.00 0.0 38.35 2.41 R
1778 2012 0.470833 CTCCCCAGACTCCGGATCAT 60.471 60.0 3.57 0.0 0.00 2.45 R
2154 2422 0.809636 TATGCACCGACAATGGCTCG 60.810 55.0 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.490962 TTAAGCGACAAGTAATATGGATTGG 57.509 36.000 0.00 0.00 0.00 3.16
25 26 5.290493 AGCGACAAGTAATATGGATTGGA 57.710 39.130 0.00 0.00 0.00 3.53
26 27 5.300752 AGCGACAAGTAATATGGATTGGAG 58.699 41.667 0.00 0.00 0.00 3.86
27 28 4.452455 GCGACAAGTAATATGGATTGGAGG 59.548 45.833 0.00 0.00 0.00 4.30
28 29 4.997395 CGACAAGTAATATGGATTGGAGGG 59.003 45.833 0.00 0.00 0.00 4.30
29 30 5.221641 CGACAAGTAATATGGATTGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
30 31 6.192970 ACAAGTAATATGGATTGGAGGGAG 57.807 41.667 0.00 0.00 0.00 4.30
31 32 5.672194 ACAAGTAATATGGATTGGAGGGAGT 59.328 40.000 0.00 0.00 0.00 3.85
32 33 5.832539 AGTAATATGGATTGGAGGGAGTG 57.167 43.478 0.00 0.00 0.00 3.51
33 34 3.515602 AATATGGATTGGAGGGAGTGC 57.484 47.619 0.00 0.00 0.00 4.40
34 35 1.140312 TATGGATTGGAGGGAGTGCC 58.860 55.000 0.00 0.00 0.00 5.01
35 36 0.920763 ATGGATTGGAGGGAGTGCCA 60.921 55.000 2.50 0.00 35.15 4.92
41 42 3.756082 TTGGAGGGAGTGCCAATTATT 57.244 42.857 2.50 0.00 39.14 1.40
42 43 4.871871 TTGGAGGGAGTGCCAATTATTA 57.128 40.909 2.50 0.00 39.14 0.98
43 44 5.402054 TTGGAGGGAGTGCCAATTATTAT 57.598 39.130 2.50 0.00 39.14 1.28
44 45 5.402054 TGGAGGGAGTGCCAATTATTATT 57.598 39.130 2.50 0.00 35.15 1.40
45 46 5.776358 TGGAGGGAGTGCCAATTATTATTT 58.224 37.500 2.50 0.00 35.15 1.40
46 47 6.201591 TGGAGGGAGTGCCAATTATTATTTT 58.798 36.000 2.50 0.00 35.15 1.82
47 48 6.671779 TGGAGGGAGTGCCAATTATTATTTTT 59.328 34.615 2.50 0.00 35.15 1.94
69 70 8.528044 TTTTTGAGTAAGAAATGTACCCAACT 57.472 30.769 0.00 0.00 0.00 3.16
70 71 8.528044 TTTTGAGTAAGAAATGTACCCAACTT 57.472 30.769 0.00 0.00 0.00 2.66
71 72 7.504924 TTGAGTAAGAAATGTACCCAACTTG 57.495 36.000 0.00 0.00 0.00 3.16
72 73 6.833041 TGAGTAAGAAATGTACCCAACTTGA 58.167 36.000 0.00 0.00 0.00 3.02
73 74 7.284074 TGAGTAAGAAATGTACCCAACTTGAA 58.716 34.615 0.00 0.00 0.00 2.69
74 75 7.776030 TGAGTAAGAAATGTACCCAACTTGAAA 59.224 33.333 0.00 0.00 0.00 2.69
75 76 8.706322 AGTAAGAAATGTACCCAACTTGAAAT 57.294 30.769 0.00 0.00 0.00 2.17
76 77 8.793592 AGTAAGAAATGTACCCAACTTGAAATC 58.206 33.333 0.00 0.00 0.00 2.17
77 78 6.590234 AGAAATGTACCCAACTTGAAATCC 57.410 37.500 0.00 0.00 0.00 3.01
78 79 6.314917 AGAAATGTACCCAACTTGAAATCCT 58.685 36.000 0.00 0.00 0.00 3.24
79 80 6.782494 AGAAATGTACCCAACTTGAAATCCTT 59.218 34.615 0.00 0.00 0.00 3.36
80 81 6.994421 AATGTACCCAACTTGAAATCCTTT 57.006 33.333 0.00 0.00 0.00 3.11
81 82 8.485578 AAATGTACCCAACTTGAAATCCTTTA 57.514 30.769 0.00 0.00 0.00 1.85
82 83 8.485578 AATGTACCCAACTTGAAATCCTTTAA 57.514 30.769 0.00 0.00 0.00 1.52
83 84 7.899648 TGTACCCAACTTGAAATCCTTTAAA 57.100 32.000 0.00 0.00 0.00 1.52
84 85 8.307582 TGTACCCAACTTGAAATCCTTTAAAA 57.692 30.769 0.00 0.00 0.00 1.52
85 86 8.929487 TGTACCCAACTTGAAATCCTTTAAAAT 58.071 29.630 0.00 0.00 0.00 1.82
111 112 8.924511 ATCTGAAAATACCTTCTGAAACAAGA 57.075 30.769 0.00 0.00 37.00 3.02
112 113 8.746052 TCTGAAAATACCTTCTGAAACAAGAA 57.254 30.769 0.00 0.00 32.34 2.52
113 114 9.184523 TCTGAAAATACCTTCTGAAACAAGAAA 57.815 29.630 0.00 0.00 35.79 2.52
114 115 9.801873 CTGAAAATACCTTCTGAAACAAGAAAA 57.198 29.630 0.00 0.00 35.79 2.29
117 118 9.936759 AAAATACCTTCTGAAACAAGAAAAACA 57.063 25.926 0.00 0.00 35.79 2.83
118 119 9.936759 AAATACCTTCTGAAACAAGAAAAACAA 57.063 25.926 0.00 0.00 35.79 2.83
119 120 8.926715 ATACCTTCTGAAACAAGAAAAACAAC 57.073 30.769 0.00 0.00 35.79 3.32
120 121 6.754193 ACCTTCTGAAACAAGAAAAACAACA 58.246 32.000 0.00 0.00 35.79 3.33
121 122 7.213678 ACCTTCTGAAACAAGAAAAACAACAA 58.786 30.769 0.00 0.00 35.79 2.83
122 123 7.384932 ACCTTCTGAAACAAGAAAAACAACAAG 59.615 33.333 0.00 0.00 35.79 3.16
123 124 7.598493 CCTTCTGAAACAAGAAAAACAACAAGA 59.402 33.333 0.00 0.00 35.79 3.02
124 125 7.867445 TCTGAAACAAGAAAAACAACAAGAC 57.133 32.000 0.00 0.00 0.00 3.01
125 126 7.429633 TCTGAAACAAGAAAAACAACAAGACA 58.570 30.769 0.00 0.00 0.00 3.41
126 127 7.923344 TCTGAAACAAGAAAAACAACAAGACAA 59.077 29.630 0.00 0.00 0.00 3.18
127 128 8.600449 TGAAACAAGAAAAACAACAAGACAAT 57.400 26.923 0.00 0.00 0.00 2.71
128 129 8.494347 TGAAACAAGAAAAACAACAAGACAATG 58.506 29.630 0.00 0.00 0.00 2.82
129 130 6.966435 ACAAGAAAAACAACAAGACAATGG 57.034 33.333 0.00 0.00 0.00 3.16
130 131 6.463360 ACAAGAAAAACAACAAGACAATGGT 58.537 32.000 0.00 0.00 0.00 3.55
131 132 7.607250 ACAAGAAAAACAACAAGACAATGGTA 58.393 30.769 0.00 0.00 0.00 3.25
132 133 8.257306 ACAAGAAAAACAACAAGACAATGGTAT 58.743 29.630 0.00 0.00 0.00 2.73
133 134 9.743057 CAAGAAAAACAACAAGACAATGGTATA 57.257 29.630 0.00 0.00 0.00 1.47
280 281 9.657728 TGTTTTTATTTAGTTTTCTTAGGGGGA 57.342 29.630 0.00 0.00 0.00 4.81
285 286 9.831682 TTATTTAGTTTTCTTAGGGGGATTTGT 57.168 29.630 0.00 0.00 0.00 2.83
286 287 8.736097 ATTTAGTTTTCTTAGGGGGATTTGTT 57.264 30.769 0.00 0.00 0.00 2.83
308 309 7.099120 TGTTTTTATTTAGTACTCCCTCCGTC 58.901 38.462 0.00 0.00 0.00 4.79
311 312 0.107017 TTAGTACTCCCTCCGTCCCG 60.107 60.000 0.00 0.00 0.00 5.14
321 322 2.094338 CCCTCCGTCCCGTAATATAAGC 60.094 54.545 0.00 0.00 0.00 3.09
325 326 2.030893 CCGTCCCGTAATATAAGCACGA 60.031 50.000 0.00 0.00 37.89 4.35
330 331 6.587651 GTCCCGTAATATAAGCACGATTTTC 58.412 40.000 0.00 0.00 37.89 2.29
332 333 6.762187 TCCCGTAATATAAGCACGATTTTCAA 59.238 34.615 0.00 0.00 37.89 2.69
333 334 7.042321 TCCCGTAATATAAGCACGATTTTCAAG 60.042 37.037 0.00 0.00 37.89 3.02
339 340 6.683974 ATAAGCACGATTTTCAAGCTATGT 57.316 33.333 0.00 0.00 34.66 2.29
342 343 6.494893 AGCACGATTTTCAAGCTATGTTAA 57.505 33.333 0.00 0.00 33.06 2.01
343 344 6.314784 AGCACGATTTTCAAGCTATGTTAAC 58.685 36.000 0.00 0.00 33.06 2.01
344 345 6.149474 AGCACGATTTTCAAGCTATGTTAACT 59.851 34.615 7.22 0.00 33.06 2.24
346 347 7.201266 GCACGATTTTCAAGCTATGTTAACTTG 60.201 37.037 7.22 2.84 41.70 3.16
371 372 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
382 383 4.687262 ATTATGGGACGGAGGGAGTATA 57.313 45.455 0.00 0.00 0.00 1.47
387 388 4.042174 TGGGACGGAGGGAGTATATTTTT 58.958 43.478 0.00 0.00 0.00 1.94
388 389 5.218179 TGGGACGGAGGGAGTATATTTTTA 58.782 41.667 0.00 0.00 0.00 1.52
389 390 5.666718 TGGGACGGAGGGAGTATATTTTTAA 59.333 40.000 0.00 0.00 0.00 1.52
390 391 6.330778 TGGGACGGAGGGAGTATATTTTTAAT 59.669 38.462 0.00 0.00 0.00 1.40
392 393 7.389884 GGGACGGAGGGAGTATATTTTTAATTC 59.610 40.741 0.00 0.00 0.00 2.17
393 394 8.155510 GGACGGAGGGAGTATATTTTTAATTCT 58.844 37.037 0.00 0.00 0.00 2.40
439 440 6.126409 TCATAAACAAGGTTCATGGGGATAC 58.874 40.000 0.00 0.00 0.00 2.24
449 450 6.777580 AGGTTCATGGGGATACAATTTATGTC 59.222 38.462 0.00 0.00 42.70 3.06
451 452 5.312895 TCATGGGGATACAATTTATGTCCG 58.687 41.667 0.00 0.00 42.70 4.79
453 454 3.717392 TGGGGATACAATTTATGTCCGGA 59.283 43.478 0.00 0.00 42.70 5.14
483 484 1.014352 GCCACATATGACGTCCAACC 58.986 55.000 14.12 0.00 0.00 3.77
484 485 1.677518 GCCACATATGACGTCCAACCA 60.678 52.381 14.12 0.00 0.00 3.67
488 489 4.379394 CCACATATGACGTCCAACCAAAAG 60.379 45.833 14.12 0.00 0.00 2.27
509 510 0.317436 CCTAGAGCGTGCTTAGCGAG 60.317 60.000 0.00 0.00 40.04 5.03
639 640 2.496899 TGCCTTCCTTCAAGTCATCC 57.503 50.000 0.00 0.00 0.00 3.51
646 647 2.154462 CCTTCAAGTCATCCACCACAC 58.846 52.381 0.00 0.00 0.00 3.82
654 655 0.612732 CATCCACCACACCCTTGCAT 60.613 55.000 0.00 0.00 0.00 3.96
658 659 0.827089 CACCACACCCTTGCATTCCA 60.827 55.000 0.00 0.00 0.00 3.53
683 684 3.645212 ACTATGATCACATGTGAGAGGGG 59.355 47.826 30.63 21.66 43.61 4.79
688 689 1.008815 TCACATGTGAGAGGGGGAGAT 59.991 52.381 24.56 0.00 34.14 2.75
710 711 2.171448 TCAAGGCAAGAGATAGGGCTTC 59.829 50.000 0.00 0.00 44.39 3.86
711 712 1.885049 AGGCAAGAGATAGGGCTTCA 58.115 50.000 0.00 0.00 33.12 3.02
712 713 1.488393 AGGCAAGAGATAGGGCTTCAC 59.512 52.381 0.00 0.00 33.12 3.18
713 714 1.576356 GCAAGAGATAGGGCTTCACG 58.424 55.000 0.00 0.00 0.00 4.35
714 715 1.137086 GCAAGAGATAGGGCTTCACGA 59.863 52.381 0.00 0.00 0.00 4.35
715 716 2.815478 CAAGAGATAGGGCTTCACGAC 58.185 52.381 0.00 0.00 0.00 4.34
716 717 2.145397 AGAGATAGGGCTTCACGACA 57.855 50.000 0.00 0.00 0.00 4.35
717 718 2.457598 AGAGATAGGGCTTCACGACAA 58.542 47.619 0.00 0.00 0.00 3.18
751 752 3.041946 AGAATTGCCGGGTCTAAGATCT 58.958 45.455 2.18 0.00 0.00 2.75
753 754 0.744874 TTGCCGGGTCTAAGATCTCG 59.255 55.000 2.18 0.00 0.00 4.04
757 758 1.337387 CCGGGTCTAAGATCTCGGAAC 59.663 57.143 11.77 8.12 39.83 3.62
762 763 5.221185 CGGGTCTAAGATCTCGGAACATTTA 60.221 44.000 12.84 0.00 0.00 1.40
766 767 9.110502 GGTCTAAGATCTCGGAACATTTAAAAT 57.889 33.333 0.00 0.00 0.00 1.82
809 834 6.169557 AGTAGAATCCTTTGTACACACACA 57.830 37.500 0.00 0.00 34.79 3.72
810 835 5.989777 AGTAGAATCCTTTGTACACACACAC 59.010 40.000 0.00 0.00 34.79 3.82
813 838 3.797451 TCCTTTGTACACACACACGTA 57.203 42.857 0.00 0.00 33.30 3.57
816 841 3.244345 CCTTTGTACACACACACGTACAG 59.756 47.826 0.00 0.00 46.26 2.74
875 900 0.452452 GACACCGTCTCGAACTCGTC 60.452 60.000 0.00 0.00 40.80 4.20
984 1009 4.302509 TTTCGCCTGAACCGCCGA 62.303 61.111 0.00 0.00 32.71 5.54
985 1010 3.811118 TTTCGCCTGAACCGCCGAA 62.811 57.895 0.00 0.00 37.85 4.30
1229 1291 2.363147 GGACACCCTCGAGGAGCT 60.363 66.667 33.39 13.61 39.89 4.09
1324 1437 1.440476 CGTCCGGTGGAAGGGTATC 59.560 63.158 0.00 0.00 31.38 2.24
1333 1446 3.896272 GGTGGAAGGGTATCGATCTAAGT 59.104 47.826 0.00 0.00 0.00 2.24
1334 1447 4.262079 GGTGGAAGGGTATCGATCTAAGTG 60.262 50.000 0.00 0.00 0.00 3.16
1337 1450 4.321378 GGAAGGGTATCGATCTAAGTGCTC 60.321 50.000 0.00 0.00 0.00 4.26
1338 1451 3.833732 AGGGTATCGATCTAAGTGCTCA 58.166 45.455 0.00 0.00 0.00 4.26
1340 1453 4.219507 AGGGTATCGATCTAAGTGCTCATG 59.780 45.833 0.00 0.00 0.00 3.07
1368 1561 3.987745 TCTGTAATCTGAGAAGGAGGCT 58.012 45.455 0.00 0.00 0.00 4.58
1373 1566 2.151502 TCTGAGAAGGAGGCTAGTGG 57.848 55.000 0.00 0.00 0.00 4.00
1380 1573 2.478872 AGGAGGCTAGTGGCAGATTA 57.521 50.000 0.00 0.00 44.01 1.75
1383 1576 3.718956 AGGAGGCTAGTGGCAGATTATTT 59.281 43.478 0.00 0.00 44.01 1.40
1385 1578 4.444876 GGAGGCTAGTGGCAGATTATTTGA 60.445 45.833 0.00 0.00 44.01 2.69
1386 1579 4.455606 AGGCTAGTGGCAGATTATTTGAC 58.544 43.478 0.00 0.00 44.01 3.18
1388 1581 4.640201 GGCTAGTGGCAGATTATTTGACAA 59.360 41.667 0.00 0.00 44.01 3.18
1389 1582 5.300286 GGCTAGTGGCAGATTATTTGACAAT 59.700 40.000 0.00 0.00 44.01 2.71
1390 1583 6.486657 GGCTAGTGGCAGATTATTTGACAATA 59.513 38.462 0.00 0.00 44.01 1.90
1391 1584 7.355778 GCTAGTGGCAGATTATTTGACAATAC 58.644 38.462 0.00 0.00 34.84 1.89
1392 1585 6.363577 AGTGGCAGATTATTTGACAATACG 57.636 37.500 0.00 0.00 34.84 3.06
1393 1586 5.880332 AGTGGCAGATTATTTGACAATACGT 59.120 36.000 0.00 0.00 34.84 3.57
1394 1587 6.374333 AGTGGCAGATTATTTGACAATACGTT 59.626 34.615 0.00 0.00 34.84 3.99
1435 1628 9.985730 AAGTTTTTAATCTGATTTCTTCATGCA 57.014 25.926 8.38 0.00 32.72 3.96
1439 1632 4.634184 ATCTGATTTCTTCATGCAGTGC 57.366 40.909 8.58 8.58 32.72 4.40
1441 1634 4.835678 TCTGATTTCTTCATGCAGTGCTA 58.164 39.130 17.60 3.01 32.72 3.49
1464 1657 7.041508 GCTAGAGGATATTCACATTGGAAACAG 60.042 40.741 0.00 0.00 44.54 3.16
1469 1662 9.699410 AGGATATTCACATTGGAAACAGAATTA 57.301 29.630 0.00 0.00 44.54 1.40
1470 1663 9.956720 GGATATTCACATTGGAAACAGAATTAG 57.043 33.333 0.00 0.00 44.54 1.73
1471 1664 9.455847 GATATTCACATTGGAAACAGAATTAGC 57.544 33.333 0.00 0.00 44.54 3.09
1472 1665 6.899393 TTCACATTGGAAACAGAATTAGCT 57.101 33.333 0.00 0.00 44.54 3.32
1473 1666 6.899393 TCACATTGGAAACAGAATTAGCTT 57.101 33.333 0.00 0.00 44.54 3.74
1474 1667 6.913170 TCACATTGGAAACAGAATTAGCTTC 58.087 36.000 0.00 0.00 44.54 3.86
1475 1668 6.071952 TCACATTGGAAACAGAATTAGCTTCC 60.072 38.462 0.00 5.87 44.54 3.46
1476 1669 5.774690 ACATTGGAAACAGAATTAGCTTCCA 59.225 36.000 9.87 9.87 42.89 3.53
1477 1670 5.705609 TTGGAAACAGAATTAGCTTCCAC 57.294 39.130 12.39 0.00 43.95 4.02
1478 1671 4.985538 TGGAAACAGAATTAGCTTCCACT 58.014 39.130 9.87 0.00 40.41 4.00
1479 1672 6.121776 TGGAAACAGAATTAGCTTCCACTA 57.878 37.500 9.87 0.00 40.41 2.74
1480 1673 6.539173 TGGAAACAGAATTAGCTTCCACTAA 58.461 36.000 9.87 0.00 40.41 2.24
1481 1674 7.001674 TGGAAACAGAATTAGCTTCCACTAAA 58.998 34.615 9.87 0.00 40.41 1.85
1482 1675 7.504238 TGGAAACAGAATTAGCTTCCACTAAAA 59.496 33.333 9.87 0.00 40.41 1.52
1483 1676 8.357402 GGAAACAGAATTAGCTTCCACTAAAAA 58.643 33.333 0.00 0.00 35.82 1.94
1484 1677 9.181805 GAAACAGAATTAGCTTCCACTAAAAAC 57.818 33.333 0.00 0.00 35.82 2.43
1485 1678 7.817418 ACAGAATTAGCTTCCACTAAAAACA 57.183 32.000 0.00 0.00 35.82 2.83
1486 1679 8.232913 ACAGAATTAGCTTCCACTAAAAACAA 57.767 30.769 0.00 0.00 35.82 2.83
1487 1680 8.691797 ACAGAATTAGCTTCCACTAAAAACAAA 58.308 29.630 0.00 0.00 35.82 2.83
1488 1681 9.528018 CAGAATTAGCTTCCACTAAAAACAAAA 57.472 29.630 0.00 0.00 35.82 2.44
1491 1684 9.660180 AATTAGCTTCCACTAAAAACAAAAACA 57.340 25.926 0.00 0.00 35.82 2.83
1492 1685 8.696410 TTAGCTTCCACTAAAAACAAAAACAG 57.304 30.769 0.00 0.00 0.00 3.16
1493 1686 6.930731 AGCTTCCACTAAAAACAAAAACAGA 58.069 32.000 0.00 0.00 0.00 3.41
1494 1687 7.382898 AGCTTCCACTAAAAACAAAAACAGAA 58.617 30.769 0.00 0.00 0.00 3.02
1495 1688 8.040727 AGCTTCCACTAAAAACAAAAACAGAAT 58.959 29.630 0.00 0.00 0.00 2.40
1496 1689 8.664798 GCTTCCACTAAAAACAAAAACAGAATT 58.335 29.630 0.00 0.00 0.00 2.17
1497 1690 9.971744 CTTCCACTAAAAACAAAAACAGAATTG 57.028 29.630 0.00 0.00 0.00 2.32
1499 1692 7.065204 TCCACTAAAAACAAAAACAGAATTGGC 59.935 33.333 0.00 0.00 0.00 4.52
1501 1694 8.116136 CACTAAAAACAAAAACAGAATTGGCTC 58.884 33.333 0.00 0.00 0.00 4.70
1504 1697 4.326504 ACAAAAACAGAATTGGCTCCTG 57.673 40.909 0.00 0.00 0.00 3.86
1507 1700 4.861102 AAAACAGAATTGGCTCCTGAAG 57.139 40.909 0.00 0.00 0.00 3.02
1508 1701 3.795688 AACAGAATTGGCTCCTGAAGA 57.204 42.857 0.00 0.00 0.00 2.87
1535 1732 9.461312 TTTGGTTCAGTATCACAATTTATAGCT 57.539 29.630 0.00 0.00 0.00 3.32
1558 1762 2.169832 TGCTGTTCCTAGTCAAGCAC 57.830 50.000 3.34 0.00 0.00 4.40
1562 1766 3.120060 GCTGTTCCTAGTCAAGCACAATG 60.120 47.826 0.00 0.00 0.00 2.82
1596 1822 9.787532 CCTGTATTGTTATTTTACAGTTCATGG 57.212 33.333 8.12 0.00 40.66 3.66
1624 1857 5.989477 TGTATCTTCTGTTGGTAGATTGGG 58.011 41.667 0.00 0.00 31.46 4.12
1666 1900 4.261909 GGTAAACTCTTCTCAGGTTCACGA 60.262 45.833 0.00 0.00 0.00 4.35
1778 2012 7.068839 ACAGAAGAAGAGTTCTCAAGTAGACAA 59.931 37.037 2.64 0.00 39.61 3.18
1808 2042 1.078143 CTGGGGAGCTTGTACCTGC 60.078 63.158 0.00 0.00 0.00 4.85
1830 2064 4.118410 CGAAGGATGGATTCTGAAGAGTG 58.882 47.826 0.00 0.00 0.00 3.51
1831 2065 3.557228 AGGATGGATTCTGAAGAGTGC 57.443 47.619 0.00 0.00 0.00 4.40
1832 2066 2.842496 AGGATGGATTCTGAAGAGTGCA 59.158 45.455 0.00 0.00 36.65 4.57
1833 2067 2.941720 GGATGGATTCTGAAGAGTGCAC 59.058 50.000 9.40 9.40 35.24 4.57
1842 2077 2.740981 CTGAAGAGTGCACTGGACATTC 59.259 50.000 27.27 18.59 0.00 2.67
1873 2115 1.539157 GACAGGAAGGCTTTCAAGGG 58.461 55.000 8.54 0.00 34.90 3.95
1888 2141 3.140623 TCAAGGGTGGTAAAAAGCGTAC 58.859 45.455 0.00 0.00 0.00 3.67
1898 2154 5.237779 TGGTAAAAAGCGTACAGAAGGAAAG 59.762 40.000 0.00 0.00 0.00 2.62
1934 2200 4.058817 AGCACAAGTTGTAGCAAGAGTAC 58.941 43.478 23.31 0.00 30.52 2.73
1940 2206 2.993899 GTTGTAGCAAGAGTACGCATGT 59.006 45.455 3.83 0.00 0.00 3.21
1961 2227 8.350722 GCATGTGTATGATTCAGAAGATGATTT 58.649 33.333 0.00 0.00 35.53 2.17
1966 2232 9.117183 TGTATGATTCAGAAGATGATTTTGAGG 57.883 33.333 0.00 0.00 37.89 3.86
1986 2252 3.394940 AGGCTGACCATGATGATGAGAAT 59.605 43.478 0.00 0.00 39.06 2.40
2036 2304 6.709846 CCTTCTTAGATGGAGATGTTGATTCC 59.290 42.308 8.30 0.00 0.00 3.01
2154 2422 4.557496 GCTCATTTCAGAAGGGTGTGTTTC 60.557 45.833 0.00 0.00 0.00 2.78
2155 2423 3.563808 TCATTTCAGAAGGGTGTGTTTCG 59.436 43.478 0.00 0.00 0.00 3.46
2156 2424 2.992124 TTCAGAAGGGTGTGTTTCGA 57.008 45.000 0.00 0.00 0.00 3.71
2157 2425 2.526304 TCAGAAGGGTGTGTTTCGAG 57.474 50.000 0.00 0.00 0.00 4.04
2158 2426 0.868406 CAGAAGGGTGTGTTTCGAGC 59.132 55.000 0.00 0.00 0.00 5.03
2159 2427 0.250338 AGAAGGGTGTGTTTCGAGCC 60.250 55.000 0.00 0.00 0.00 4.70
2160 2428 0.534203 GAAGGGTGTGTTTCGAGCCA 60.534 55.000 0.00 0.00 31.76 4.75
2161 2429 0.110486 AAGGGTGTGTTTCGAGCCAT 59.890 50.000 0.00 0.00 31.76 4.40
2162 2430 0.110486 AGGGTGTGTTTCGAGCCATT 59.890 50.000 0.00 0.00 31.76 3.16
2163 2431 0.240945 GGGTGTGTTTCGAGCCATTG 59.759 55.000 0.00 0.00 0.00 2.82
2164 2432 0.951558 GGTGTGTTTCGAGCCATTGT 59.048 50.000 0.00 0.00 0.00 2.71
2167 2435 0.165944 GTGTTTCGAGCCATTGTCGG 59.834 55.000 0.00 0.00 38.02 4.79
2168 2436 0.250124 TGTTTCGAGCCATTGTCGGT 60.250 50.000 0.00 0.00 38.02 4.69
2169 2437 0.165944 GTTTCGAGCCATTGTCGGTG 59.834 55.000 0.00 0.00 38.02 4.94
2170 2438 1.573829 TTTCGAGCCATTGTCGGTGC 61.574 55.000 0.00 0.00 38.02 5.01
2173 2441 0.809636 CGAGCCATTGTCGGTGCATA 60.810 55.000 0.00 0.00 33.66 3.14
2184 2452 1.476085 TCGGTGCATATTGCCTTTTGG 59.524 47.619 0.00 0.00 44.23 3.28
2189 2457 2.896044 TGCATATTGCCTTTTGGTGTCA 59.104 40.909 0.00 0.00 44.23 3.58
2193 2461 1.691196 TTGCCTTTTGGTGTCAGGAG 58.309 50.000 0.00 0.00 42.99 3.69
2239 2507 2.726821 TGGGGACTTGATCATTTGCTC 58.273 47.619 0.00 0.00 0.00 4.26
2242 2510 2.357569 GGGACTTGATCATTTGCTCCCT 60.358 50.000 12.97 0.00 34.15 4.20
2247 2515 6.405176 GGACTTGATCATTTGCTCCCTTTTAG 60.405 42.308 0.00 0.00 0.00 1.85
2272 2540 3.331889 AGGATTACATGATTAGCCCCCAG 59.668 47.826 0.00 0.00 0.00 4.45
2301 2569 3.055240 TGGATTTGTTGATCATTTGCCCC 60.055 43.478 0.00 0.00 0.00 5.80
2374 2642 1.067635 CACCTTTTGCAATTCCTCCCG 60.068 52.381 0.00 0.00 0.00 5.14
2375 2643 1.203001 ACCTTTTGCAATTCCTCCCGA 60.203 47.619 0.00 0.00 0.00 5.14
2420 2696 5.061179 TGATGCACAGATATGATTGACAGG 58.939 41.667 0.00 0.00 0.00 4.00
2461 2737 8.291740 TGCGGATTGATGTTATCTTCATTTATG 58.708 33.333 0.00 0.00 0.00 1.90
2462 2738 7.752239 GCGGATTGATGTTATCTTCATTTATGG 59.248 37.037 0.00 0.00 0.00 2.74
2463 2739 7.752239 CGGATTGATGTTATCTTCATTTATGGC 59.248 37.037 0.00 0.00 0.00 4.40
2464 2740 8.579006 GGATTGATGTTATCTTCATTTATGGCA 58.421 33.333 0.00 0.00 0.00 4.92
2475 2751 8.518430 TCTTCATTTATGGCATTAAAGTAGCA 57.482 30.769 4.78 0.00 0.00 3.49
2476 2752 8.623903 TCTTCATTTATGGCATTAAAGTAGCAG 58.376 33.333 4.78 0.00 0.00 4.24
2477 2753 6.738114 TCATTTATGGCATTAAAGTAGCAGC 58.262 36.000 4.78 0.00 0.00 5.25
2478 2754 6.320926 TCATTTATGGCATTAAAGTAGCAGCA 59.679 34.615 4.78 0.00 0.00 4.41
2510 2786 5.603170 AAAAGTAGCAGCATTTATGGCAT 57.397 34.783 4.88 4.88 0.00 4.40
2515 2791 6.742109 AGTAGCAGCATTTATGGCATTAAAG 58.258 36.000 4.78 0.51 0.00 1.85
2583 2859 9.578576 ACCAATTTGATGTCATATATGCTACTT 57.421 29.630 7.92 0.78 0.00 2.24
2660 4457 5.717078 AGAAGTACACTTATTCACGGACA 57.283 39.130 0.00 0.00 36.11 4.02
2664 4461 4.765856 AGTACACTTATTCACGGACAGAGT 59.234 41.667 0.00 0.00 0.00 3.24
2665 4462 5.942236 AGTACACTTATTCACGGACAGAGTA 59.058 40.000 0.00 0.00 0.00 2.59
2666 4463 5.056894 ACACTTATTCACGGACAGAGTAC 57.943 43.478 0.00 0.00 0.00 2.73
2667 4464 4.521639 ACACTTATTCACGGACAGAGTACA 59.478 41.667 0.00 0.00 0.00 2.90
2668 4465 4.857588 CACTTATTCACGGACAGAGTACAC 59.142 45.833 0.00 0.00 0.00 2.90
2669 4466 4.082354 ACTTATTCACGGACAGAGTACACC 60.082 45.833 0.00 0.00 0.00 4.16
2670 4467 1.694844 TTCACGGACAGAGTACACCA 58.305 50.000 0.00 0.00 0.00 4.17
2671 4468 1.919240 TCACGGACAGAGTACACCAT 58.081 50.000 0.00 0.00 0.00 3.55
2672 4469 1.544246 TCACGGACAGAGTACACCATG 59.456 52.381 0.00 0.00 0.00 3.66
2673 4470 1.272490 CACGGACAGAGTACACCATGT 59.728 52.381 0.00 0.00 0.00 3.21
2674 4471 2.490509 CACGGACAGAGTACACCATGTA 59.509 50.000 0.00 0.00 0.00 2.29
2675 4472 3.130516 CACGGACAGAGTACACCATGTAT 59.869 47.826 0.00 0.00 35.05 2.29
2676 4473 4.337274 CACGGACAGAGTACACCATGTATA 59.663 45.833 0.00 0.00 35.05 1.47
2677 4474 5.009710 CACGGACAGAGTACACCATGTATAT 59.990 44.000 0.00 0.00 35.05 0.86
2678 4475 6.206048 CACGGACAGAGTACACCATGTATATA 59.794 42.308 0.00 0.00 35.05 0.86
2679 4476 6.946583 ACGGACAGAGTACACCATGTATATAT 59.053 38.462 0.00 0.00 35.05 0.86
2680 4477 7.120873 ACGGACAGAGTACACCATGTATATATC 59.879 40.741 0.00 0.00 35.05 1.63
2681 4478 7.337184 CGGACAGAGTACACCATGTATATATCT 59.663 40.741 0.00 0.00 35.05 1.98
2682 4479 9.682465 GGACAGAGTACACCATGTATATATCTA 57.318 37.037 0.00 0.00 35.05 1.98
2691 4488 9.601810 ACACCATGTATATATCTAGTTTCAGGA 57.398 33.333 0.00 0.00 0.00 3.86
2706 4503 2.430465 TCAGGAAACAAGCAGAGATGC 58.570 47.619 0.00 0.00 0.00 3.91
2707 4504 2.156917 CAGGAAACAAGCAGAGATGCA 58.843 47.619 2.73 0.00 37.25 3.96
2708 4505 2.753452 CAGGAAACAAGCAGAGATGCAT 59.247 45.455 0.00 0.00 37.25 3.96
2709 4506 3.192844 CAGGAAACAAGCAGAGATGCATT 59.807 43.478 0.00 0.00 37.25 3.56
2710 4507 4.397103 CAGGAAACAAGCAGAGATGCATTA 59.603 41.667 0.00 0.00 37.25 1.90
2711 4508 4.397417 AGGAAACAAGCAGAGATGCATTAC 59.603 41.667 0.00 0.00 37.25 1.89
2712 4509 4.397417 GGAAACAAGCAGAGATGCATTACT 59.603 41.667 0.00 0.22 37.25 2.24
2713 4510 4.959596 AACAAGCAGAGATGCATTACTG 57.040 40.909 21.63 21.63 37.25 2.74
2714 4511 3.947868 ACAAGCAGAGATGCATTACTGT 58.052 40.909 24.40 14.47 37.25 3.55
2715 4512 3.688185 ACAAGCAGAGATGCATTACTGTG 59.312 43.478 24.40 19.95 37.25 3.66
2716 4513 3.623906 AGCAGAGATGCATTACTGTGT 57.376 42.857 24.40 15.18 37.25 3.72
2717 4514 4.743057 AGCAGAGATGCATTACTGTGTA 57.257 40.909 24.40 0.00 37.25 2.90
2718 4515 4.691175 AGCAGAGATGCATTACTGTGTAG 58.309 43.478 24.40 8.82 37.25 2.74
2719 4516 4.161189 AGCAGAGATGCATTACTGTGTAGT 59.839 41.667 24.40 6.97 37.86 2.73
2720 4517 4.269603 GCAGAGATGCATTACTGTGTAGTG 59.730 45.833 24.40 8.44 35.14 2.74
2721 4518 4.269603 CAGAGATGCATTACTGTGTAGTGC 59.730 45.833 19.22 15.18 37.78 4.40
2722 4519 4.161189 AGAGATGCATTACTGTGTAGTGCT 59.839 41.667 20.16 10.11 37.78 4.40
2723 4520 4.836825 AGATGCATTACTGTGTAGTGCTT 58.163 39.130 20.16 15.82 37.78 3.91
2724 4521 5.977635 AGATGCATTACTGTGTAGTGCTTA 58.022 37.500 20.16 7.06 37.78 3.09
2725 4522 6.586344 AGATGCATTACTGTGTAGTGCTTAT 58.414 36.000 20.16 12.07 37.78 1.73
2726 4523 7.050377 AGATGCATTACTGTGTAGTGCTTATT 58.950 34.615 20.16 8.32 37.78 1.40
2727 4524 8.204160 AGATGCATTACTGTGTAGTGCTTATTA 58.796 33.333 20.16 5.96 37.78 0.98
2728 4525 8.731275 ATGCATTACTGTGTAGTGCTTATTAA 57.269 30.769 20.16 5.42 37.78 1.40
2729 4526 8.731275 TGCATTACTGTGTAGTGCTTATTAAT 57.269 30.769 20.16 0.00 37.78 1.40
2730 4527 9.173021 TGCATTACTGTGTAGTGCTTATTAATT 57.827 29.630 20.16 0.00 37.78 1.40
2731 4528 9.651718 GCATTACTGTGTAGTGCTTATTAATTC 57.348 33.333 14.89 0.00 37.78 2.17
2734 4531 9.938280 TTACTGTGTAGTGCTTATTAATTCTGT 57.062 29.630 0.00 0.00 37.78 3.41
2736 4533 9.938280 ACTGTGTAGTGCTTATTAATTCTGTAA 57.062 29.630 0.00 0.00 35.34 2.41
2752 4549 6.441093 TTCTGTAATCAGGATTTGACATGC 57.559 37.500 0.00 0.00 41.59 4.06
2753 4550 4.883585 TCTGTAATCAGGATTTGACATGCC 59.116 41.667 0.00 0.00 41.59 4.40
2754 4551 4.598022 TGTAATCAGGATTTGACATGCCA 58.402 39.130 0.00 0.00 38.99 4.92
2755 4552 5.015515 TGTAATCAGGATTTGACATGCCAA 58.984 37.500 0.00 0.00 38.99 4.52
2756 4553 5.657745 TGTAATCAGGATTTGACATGCCAAT 59.342 36.000 0.00 0.00 38.99 3.16
2757 4554 6.832900 TGTAATCAGGATTTGACATGCCAATA 59.167 34.615 0.00 0.00 38.99 1.90
2758 4555 6.795144 AATCAGGATTTGACATGCCAATAA 57.205 33.333 0.00 0.00 38.99 1.40
2759 4556 5.581126 TCAGGATTTGACATGCCAATAAC 57.419 39.130 0.00 0.00 0.00 1.89
2760 4557 5.015515 TCAGGATTTGACATGCCAATAACA 58.984 37.500 0.00 0.00 0.00 2.41
2761 4558 5.479724 TCAGGATTTGACATGCCAATAACAA 59.520 36.000 0.00 0.00 0.00 2.83
2762 4559 6.014755 TCAGGATTTGACATGCCAATAACAAA 60.015 34.615 0.00 0.00 0.00 2.83
2763 4560 6.311935 CAGGATTTGACATGCCAATAACAAAG 59.688 38.462 0.00 0.00 32.33 2.77
2764 4561 6.211184 AGGATTTGACATGCCAATAACAAAGA 59.789 34.615 0.00 0.00 32.33 2.52
2765 4562 6.532657 GGATTTGACATGCCAATAACAAAGAG 59.467 38.462 0.00 0.00 32.33 2.85
2766 4563 5.389859 TTGACATGCCAATAACAAAGAGG 57.610 39.130 0.00 0.00 0.00 3.69
2767 4564 3.193267 TGACATGCCAATAACAAAGAGGC 59.807 43.478 0.00 0.00 45.41 4.70
2768 4565 3.434309 ACATGCCAATAACAAAGAGGCT 58.566 40.909 0.00 0.00 45.42 4.58
2769 4566 3.834231 ACATGCCAATAACAAAGAGGCTT 59.166 39.130 0.00 0.00 45.42 4.35
2770 4567 5.016173 ACATGCCAATAACAAAGAGGCTTA 58.984 37.500 0.00 0.00 45.42 3.09
2771 4568 5.658190 ACATGCCAATAACAAAGAGGCTTAT 59.342 36.000 0.00 0.00 45.42 1.73
2772 4569 6.833416 ACATGCCAATAACAAAGAGGCTTATA 59.167 34.615 0.00 0.00 45.42 0.98
2773 4570 6.942532 TGCCAATAACAAAGAGGCTTATAG 57.057 37.500 0.00 0.00 45.42 1.31
2774 4571 6.658849 TGCCAATAACAAAGAGGCTTATAGA 58.341 36.000 0.00 0.00 45.42 1.98
2775 4572 6.542370 TGCCAATAACAAAGAGGCTTATAGAC 59.458 38.462 0.00 0.00 45.42 2.59
2776 4573 6.542370 GCCAATAACAAAGAGGCTTATAGACA 59.458 38.462 0.00 0.00 42.01 3.41
2777 4574 7.229506 GCCAATAACAAAGAGGCTTATAGACAT 59.770 37.037 0.00 0.00 42.01 3.06
2778 4575 8.778358 CCAATAACAAAGAGGCTTATAGACATC 58.222 37.037 0.00 0.00 0.00 3.06
2779 4576 9.553064 CAATAACAAAGAGGCTTATAGACATCT 57.447 33.333 0.00 0.00 0.00 2.90
2780 4577 9.771534 AATAACAAAGAGGCTTATAGACATCTC 57.228 33.333 0.00 0.00 0.00 2.75
2781 4578 6.798427 ACAAAGAGGCTTATAGACATCTCA 57.202 37.500 0.00 0.00 0.00 3.27
2782 4579 7.372260 ACAAAGAGGCTTATAGACATCTCAT 57.628 36.000 0.00 0.00 0.00 2.90
2783 4580 7.441017 ACAAAGAGGCTTATAGACATCTCATC 58.559 38.462 0.00 0.00 0.00 2.92
2784 4581 7.289782 ACAAAGAGGCTTATAGACATCTCATCT 59.710 37.037 0.00 0.00 0.00 2.90
2785 4582 6.839124 AGAGGCTTATAGACATCTCATCTG 57.161 41.667 0.00 0.00 0.00 2.90
2786 4583 6.314120 AGAGGCTTATAGACATCTCATCTGT 58.686 40.000 0.00 0.00 0.00 3.41
2787 4584 7.465960 AGAGGCTTATAGACATCTCATCTGTA 58.534 38.462 0.00 0.00 0.00 2.74
2788 4585 8.115384 AGAGGCTTATAGACATCTCATCTGTAT 58.885 37.037 0.00 0.00 0.00 2.29
2789 4586 8.292444 AGGCTTATAGACATCTCATCTGTATC 57.708 38.462 0.00 0.00 0.00 2.24
2790 4587 8.115384 AGGCTTATAGACATCTCATCTGTATCT 58.885 37.037 0.00 0.00 0.00 1.98
2791 4588 8.190122 GGCTTATAGACATCTCATCTGTATCTG 58.810 40.741 0.00 0.00 0.00 2.90
2792 4589 8.739039 GCTTATAGACATCTCATCTGTATCTGT 58.261 37.037 0.00 0.00 0.00 3.41
2797 4594 8.938801 AGACATCTCATCTGTATCTGTTATCT 57.061 34.615 0.00 0.00 0.00 1.98
2800 4597 9.806448 ACATCTCATCTGTATCTGTTATCTACT 57.194 33.333 0.00 0.00 0.00 2.57
2802 4599 8.856153 TCTCATCTGTATCTGTTATCTACTCC 57.144 38.462 0.00 0.00 0.00 3.85
2803 4600 8.664992 TCTCATCTGTATCTGTTATCTACTCCT 58.335 37.037 0.00 0.00 0.00 3.69
2804 4601 9.952030 CTCATCTGTATCTGTTATCTACTCCTA 57.048 37.037 0.00 0.00 0.00 2.94
2805 4602 9.727859 TCATCTGTATCTGTTATCTACTCCTAC 57.272 37.037 0.00 0.00 0.00 3.18
2806 4603 9.733556 CATCTGTATCTGTTATCTACTCCTACT 57.266 37.037 0.00 0.00 0.00 2.57
2821 4618 9.206690 TCTACTCCTACTAGTAGTACTAAAGCA 57.793 37.037 24.84 6.01 46.07 3.91
2823 4620 8.680039 ACTCCTACTAGTAGTACTAAAGCATG 57.320 38.462 24.84 8.22 29.00 4.06
2824 4621 7.720515 ACTCCTACTAGTAGTACTAAAGCATGG 59.279 40.741 24.84 8.93 29.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.276658 TCCAATCCATATTACTTGTCGCTTAA 58.723 34.615 0.00 0.00 0.00 1.85
1 2 6.822442 TCCAATCCATATTACTTGTCGCTTA 58.178 36.000 0.00 0.00 0.00 3.09
3 4 5.290493 TCCAATCCATATTACTTGTCGCT 57.710 39.130 0.00 0.00 0.00 4.93
4 5 4.452455 CCTCCAATCCATATTACTTGTCGC 59.548 45.833 0.00 0.00 0.00 5.19
7 8 5.672194 ACTCCCTCCAATCCATATTACTTGT 59.328 40.000 0.00 0.00 0.00 3.16
9 10 5.456763 GCACTCCCTCCAATCCATATTACTT 60.457 44.000 0.00 0.00 0.00 2.24
10 11 4.042187 GCACTCCCTCCAATCCATATTACT 59.958 45.833 0.00 0.00 0.00 2.24
11 12 4.327680 GCACTCCCTCCAATCCATATTAC 58.672 47.826 0.00 0.00 0.00 1.89
12 13 3.330701 GGCACTCCCTCCAATCCATATTA 59.669 47.826 0.00 0.00 0.00 0.98
13 14 2.108952 GGCACTCCCTCCAATCCATATT 59.891 50.000 0.00 0.00 0.00 1.28
14 15 1.707427 GGCACTCCCTCCAATCCATAT 59.293 52.381 0.00 0.00 0.00 1.78
15 16 1.140312 GGCACTCCCTCCAATCCATA 58.860 55.000 0.00 0.00 0.00 2.74
16 17 0.920763 TGGCACTCCCTCCAATCCAT 60.921 55.000 0.00 0.00 0.00 3.41
17 18 1.139498 TTGGCACTCCCTCCAATCCA 61.139 55.000 0.00 0.00 37.43 3.41
18 19 0.259938 ATTGGCACTCCCTCCAATCC 59.740 55.000 0.99 0.00 46.90 3.01
19 20 3.911719 ATTGGCACTCCCTCCAATC 57.088 52.632 0.99 0.00 46.90 2.67
21 22 3.756082 AATAATTGGCACTCCCTCCAA 57.244 42.857 0.00 0.00 45.35 3.53
22 23 5.402054 AATAATAATTGGCACTCCCTCCA 57.598 39.130 0.00 0.00 0.00 3.86
23 24 6.731292 AAAATAATAATTGGCACTCCCTCC 57.269 37.500 0.00 0.00 0.00 4.30
44 45 8.528044 AGTTGGGTACATTTCTTACTCAAAAA 57.472 30.769 0.00 0.00 40.73 1.94
45 46 8.410141 CAAGTTGGGTACATTTCTTACTCAAAA 58.590 33.333 0.00 0.00 40.73 2.44
46 47 7.776030 TCAAGTTGGGTACATTTCTTACTCAAA 59.224 33.333 2.34 0.00 40.73 2.69
47 48 7.284074 TCAAGTTGGGTACATTTCTTACTCAA 58.716 34.615 2.34 0.00 37.54 3.02
48 49 6.833041 TCAAGTTGGGTACATTTCTTACTCA 58.167 36.000 2.34 0.00 0.00 3.41
49 50 7.739498 TTCAAGTTGGGTACATTTCTTACTC 57.261 36.000 2.34 0.00 0.00 2.59
50 51 8.706322 ATTTCAAGTTGGGTACATTTCTTACT 57.294 30.769 2.34 0.00 0.00 2.24
51 52 8.027189 GGATTTCAAGTTGGGTACATTTCTTAC 58.973 37.037 2.34 0.00 0.00 2.34
52 53 7.947890 AGGATTTCAAGTTGGGTACATTTCTTA 59.052 33.333 2.34 0.00 0.00 2.10
53 54 6.782494 AGGATTTCAAGTTGGGTACATTTCTT 59.218 34.615 2.34 0.00 0.00 2.52
54 55 6.314917 AGGATTTCAAGTTGGGTACATTTCT 58.685 36.000 2.34 0.00 0.00 2.52
55 56 6.590234 AGGATTTCAAGTTGGGTACATTTC 57.410 37.500 2.34 0.00 0.00 2.17
56 57 6.994421 AAGGATTTCAAGTTGGGTACATTT 57.006 33.333 2.34 0.00 0.00 2.32
57 58 6.994421 AAAGGATTTCAAGTTGGGTACATT 57.006 33.333 2.34 0.00 27.08 2.71
58 59 8.485578 TTTAAAGGATTTCAAGTTGGGTACAT 57.514 30.769 2.34 0.00 40.09 2.29
59 60 7.899648 TTTAAAGGATTTCAAGTTGGGTACA 57.100 32.000 2.34 0.00 40.09 2.90
86 87 8.924511 TCTTGTTTCAGAAGGTATTTTCAGAT 57.075 30.769 0.00 0.00 0.00 2.90
87 88 8.746052 TTCTTGTTTCAGAAGGTATTTTCAGA 57.254 30.769 0.00 0.00 0.00 3.27
88 89 9.801873 TTTTCTTGTTTCAGAAGGTATTTTCAG 57.198 29.630 0.00 0.00 34.22 3.02
91 92 9.936759 TGTTTTTCTTGTTTCAGAAGGTATTTT 57.063 25.926 0.00 0.00 34.22 1.82
92 93 9.936759 TTGTTTTTCTTGTTTCAGAAGGTATTT 57.063 25.926 0.00 0.00 34.22 1.40
93 94 9.366216 GTTGTTTTTCTTGTTTCAGAAGGTATT 57.634 29.630 0.00 0.00 34.22 1.89
94 95 8.527810 TGTTGTTTTTCTTGTTTCAGAAGGTAT 58.472 29.630 0.00 0.00 34.22 2.73
95 96 7.887381 TGTTGTTTTTCTTGTTTCAGAAGGTA 58.113 30.769 0.00 0.00 34.22 3.08
96 97 6.754193 TGTTGTTTTTCTTGTTTCAGAAGGT 58.246 32.000 0.00 0.00 34.22 3.50
97 98 7.598493 TCTTGTTGTTTTTCTTGTTTCAGAAGG 59.402 33.333 0.00 0.00 34.22 3.46
98 99 8.427774 GTCTTGTTGTTTTTCTTGTTTCAGAAG 58.572 33.333 0.00 0.00 34.22 2.85
99 100 7.923344 TGTCTTGTTGTTTTTCTTGTTTCAGAA 59.077 29.630 0.00 0.00 0.00 3.02
100 101 7.429633 TGTCTTGTTGTTTTTCTTGTTTCAGA 58.570 30.769 0.00 0.00 0.00 3.27
101 102 7.636259 TGTCTTGTTGTTTTTCTTGTTTCAG 57.364 32.000 0.00 0.00 0.00 3.02
102 103 8.494347 CATTGTCTTGTTGTTTTTCTTGTTTCA 58.506 29.630 0.00 0.00 0.00 2.69
103 104 7.956943 CCATTGTCTTGTTGTTTTTCTTGTTTC 59.043 33.333 0.00 0.00 0.00 2.78
104 105 7.443879 ACCATTGTCTTGTTGTTTTTCTTGTTT 59.556 29.630 0.00 0.00 0.00 2.83
105 106 6.934083 ACCATTGTCTTGTTGTTTTTCTTGTT 59.066 30.769 0.00 0.00 0.00 2.83
106 107 6.463360 ACCATTGTCTTGTTGTTTTTCTTGT 58.537 32.000 0.00 0.00 0.00 3.16
107 108 6.966435 ACCATTGTCTTGTTGTTTTTCTTG 57.034 33.333 0.00 0.00 0.00 3.02
254 255 9.657728 TCCCCCTAAGAAAACTAAATAAAAACA 57.342 29.630 0.00 0.00 0.00 2.83
259 260 9.831682 ACAAATCCCCCTAAGAAAACTAAATAA 57.168 29.630 0.00 0.00 0.00 1.40
260 261 9.831682 AACAAATCCCCCTAAGAAAACTAAATA 57.168 29.630 0.00 0.00 0.00 1.40
261 262 8.736097 AACAAATCCCCCTAAGAAAACTAAAT 57.264 30.769 0.00 0.00 0.00 1.40
262 263 8.555896 AAACAAATCCCCCTAAGAAAACTAAA 57.444 30.769 0.00 0.00 0.00 1.85
263 264 8.555896 AAAACAAATCCCCCTAAGAAAACTAA 57.444 30.769 0.00 0.00 0.00 2.24
264 265 8.555896 AAAAACAAATCCCCCTAAGAAAACTA 57.444 30.769 0.00 0.00 0.00 2.24
265 266 7.446106 AAAAACAAATCCCCCTAAGAAAACT 57.554 32.000 0.00 0.00 0.00 2.66
266 267 9.787435 AATAAAAACAAATCCCCCTAAGAAAAC 57.213 29.630 0.00 0.00 0.00 2.43
270 271 9.831682 ACTAAATAAAAACAAATCCCCCTAAGA 57.168 29.630 0.00 0.00 0.00 2.10
274 275 9.251440 GAGTACTAAATAAAAACAAATCCCCCT 57.749 33.333 0.00 0.00 0.00 4.79
275 276 8.472413 GGAGTACTAAATAAAAACAAATCCCCC 58.528 37.037 0.00 0.00 0.00 5.40
276 277 8.472413 GGGAGTACTAAATAAAAACAAATCCCC 58.528 37.037 0.00 0.00 35.18 4.81
277 278 9.251440 AGGGAGTACTAAATAAAAACAAATCCC 57.749 33.333 0.00 0.00 40.38 3.85
280 281 8.953313 CGGAGGGAGTACTAAATAAAAACAAAT 58.047 33.333 0.00 0.00 0.00 2.32
281 282 7.938490 ACGGAGGGAGTACTAAATAAAAACAAA 59.062 33.333 0.00 0.00 0.00 2.83
282 283 7.452562 ACGGAGGGAGTACTAAATAAAAACAA 58.547 34.615 0.00 0.00 0.00 2.83
283 284 7.008021 ACGGAGGGAGTACTAAATAAAAACA 57.992 36.000 0.00 0.00 0.00 2.83
284 285 6.536582 GGACGGAGGGAGTACTAAATAAAAAC 59.463 42.308 0.00 0.00 0.00 2.43
285 286 6.352137 GGGACGGAGGGAGTACTAAATAAAAA 60.352 42.308 0.00 0.00 0.00 1.94
286 287 5.129320 GGGACGGAGGGAGTACTAAATAAAA 59.871 44.000 0.00 0.00 0.00 1.52
308 309 6.533819 TGAAAATCGTGCTTATATTACGGG 57.466 37.500 0.00 0.00 38.29 5.28
321 322 8.150300 CAAGTTAACATAGCTTGAAAATCGTG 57.850 34.615 8.61 0.00 46.07 4.35
330 331 7.908193 ACGTTTTTCAAGTTAACATAGCTTG 57.092 32.000 8.61 3.39 45.01 4.01
332 333 7.927048 AGAACGTTTTTCAAGTTAACATAGCT 58.073 30.769 8.61 0.00 0.00 3.32
333 334 8.556517 AAGAACGTTTTTCAAGTTAACATAGC 57.443 30.769 8.61 0.00 0.00 2.97
346 347 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
364 365 3.562108 AATATACTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
366 367 4.701651 AAAAATATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
439 440 7.095187 GCTCCTTAATACTCCGGACATAAATTG 60.095 40.741 0.00 0.00 0.00 2.32
449 450 1.760613 TGTGGCTCCTTAATACTCCGG 59.239 52.381 0.00 0.00 0.00 5.14
451 452 6.166982 GTCATATGTGGCTCCTTAATACTCC 58.833 44.000 1.90 0.00 0.00 3.85
453 454 5.304614 ACGTCATATGTGGCTCCTTAATACT 59.695 40.000 1.90 0.00 0.00 2.12
483 484 2.086054 AGCACGCTCTAGGACTTTTG 57.914 50.000 0.00 0.00 0.00 2.44
484 485 2.841442 AAGCACGCTCTAGGACTTTT 57.159 45.000 0.00 0.00 0.00 2.27
488 489 0.592754 CGCTAAGCACGCTCTAGGAC 60.593 60.000 0.00 0.00 0.00 3.85
509 510 4.023707 GCACCAATATTGAGGCACATAGTC 60.024 45.833 17.23 0.00 0.00 2.59
639 640 0.827089 TGGAATGCAAGGGTGTGGTG 60.827 55.000 0.00 0.00 0.00 4.17
646 647 3.889815 TCATAGTCTTGGAATGCAAGGG 58.110 45.455 14.37 0.72 0.00 3.95
654 655 6.155049 TCTCACATGTGATCATAGTCTTGGAA 59.845 38.462 28.00 0.88 39.13 3.53
658 659 5.070180 CCCTCTCACATGTGATCATAGTCTT 59.930 44.000 28.00 0.00 39.13 3.01
660 661 4.262377 CCCCTCTCACATGTGATCATAGTC 60.262 50.000 28.00 0.00 39.13 2.59
667 668 1.008815 TCTCCCCCTCTCACATGTGAT 59.991 52.381 28.00 0.00 39.13 3.06
683 684 4.504689 CCCTATCTCTTGCCTTGAATCTCC 60.505 50.000 0.00 0.00 0.00 3.71
688 689 2.200081 AGCCCTATCTCTTGCCTTGAA 58.800 47.619 0.00 0.00 0.00 2.69
729 730 2.981859 TCTTAGACCCGGCAATTCTC 57.018 50.000 0.00 0.00 0.00 2.87
731 732 3.394719 GAGATCTTAGACCCGGCAATTC 58.605 50.000 0.00 0.00 0.00 2.17
753 754 8.757164 AACAAATCTCGGATTTTAAATGTTCC 57.243 30.769 8.56 0.00 0.00 3.62
762 763 9.981114 ACTAAATCAAAACAAATCTCGGATTTT 57.019 25.926 8.56 0.00 35.71 1.82
766 767 9.496873 TTCTACTAAATCAAAACAAATCTCGGA 57.503 29.630 0.00 0.00 0.00 4.55
781 806 9.431887 TGTGTGTACAAAGGATTCTACTAAATC 57.568 33.333 0.00 0.00 33.10 2.17
793 818 2.676632 ACGTGTGTGTGTACAAAGGA 57.323 45.000 0.00 0.00 38.82 3.36
875 900 5.188751 TGGGCCTGATTTTATTTTTACCCAG 59.811 40.000 4.53 0.00 38.67 4.45
956 981 1.017387 CAGGCGAAACCCTATGCTTC 58.983 55.000 0.00 0.00 40.58 3.86
1141 1203 1.208293 GATCTCCTTGTTCGGCTTCCT 59.792 52.381 0.00 0.00 0.00 3.36
1229 1291 2.162338 CTCGCCTTCCGTGTAACCCA 62.162 60.000 0.00 0.00 38.35 4.51
1233 1295 0.099968 CGATCTCGCCTTCCGTGTAA 59.900 55.000 0.00 0.00 38.35 2.41
1313 1426 3.321111 GCACTTAGATCGATACCCTTCCA 59.679 47.826 0.00 0.00 0.00 3.53
1314 1427 3.574826 AGCACTTAGATCGATACCCTTCC 59.425 47.826 0.00 0.00 0.00 3.46
1348 1467 4.892934 ACTAGCCTCCTTCTCAGATTACAG 59.107 45.833 0.00 0.00 0.00 2.74
1350 1469 4.038642 CCACTAGCCTCCTTCTCAGATTAC 59.961 50.000 0.00 0.00 0.00 1.89
1351 1470 4.219115 CCACTAGCCTCCTTCTCAGATTA 58.781 47.826 0.00 0.00 0.00 1.75
1368 1561 7.045416 ACGTATTGTCAAATAATCTGCCACTA 58.955 34.615 0.00 0.00 30.04 2.74
1373 1566 9.512287 CGTATAACGTATTGTCAAATAATCTGC 57.488 33.333 0.00 0.00 36.74 4.26
1392 1585 7.617533 AAAAACTTGCACATGAACGTATAAC 57.382 32.000 0.00 0.00 0.00 1.89
1393 1586 9.900710 ATTAAAAACTTGCACATGAACGTATAA 57.099 25.926 0.00 0.00 0.00 0.98
1394 1587 9.549509 GATTAAAAACTTGCACATGAACGTATA 57.450 29.630 0.00 0.00 0.00 1.47
1433 1626 4.327982 TGTGAATATCCTCTAGCACTGC 57.672 45.455 0.00 0.00 0.00 4.40
1434 1627 5.699915 CCAATGTGAATATCCTCTAGCACTG 59.300 44.000 0.00 0.00 0.00 3.66
1435 1628 5.604231 TCCAATGTGAATATCCTCTAGCACT 59.396 40.000 0.00 0.00 0.00 4.40
1439 1632 8.206867 TCTGTTTCCAATGTGAATATCCTCTAG 58.793 37.037 0.00 0.00 0.00 2.43
1441 1634 6.962182 TCTGTTTCCAATGTGAATATCCTCT 58.038 36.000 0.00 0.00 0.00 3.69
1469 1662 6.930731 TCTGTTTTTGTTTTTAGTGGAAGCT 58.069 32.000 0.00 0.00 0.00 3.74
1470 1663 7.589574 TTCTGTTTTTGTTTTTAGTGGAAGC 57.410 32.000 0.00 0.00 0.00 3.86
1471 1664 9.971744 CAATTCTGTTTTTGTTTTTAGTGGAAG 57.028 29.630 0.00 0.00 0.00 3.46
1472 1665 8.940952 CCAATTCTGTTTTTGTTTTTAGTGGAA 58.059 29.630 0.00 0.00 0.00 3.53
1473 1666 7.065204 GCCAATTCTGTTTTTGTTTTTAGTGGA 59.935 33.333 0.00 0.00 0.00 4.02
1474 1667 7.065683 AGCCAATTCTGTTTTTGTTTTTAGTGG 59.934 33.333 0.00 0.00 0.00 4.00
1475 1668 7.973601 AGCCAATTCTGTTTTTGTTTTTAGTG 58.026 30.769 0.00 0.00 0.00 2.74
1476 1669 7.279981 GGAGCCAATTCTGTTTTTGTTTTTAGT 59.720 33.333 0.00 0.00 0.00 2.24
1477 1670 7.495606 AGGAGCCAATTCTGTTTTTGTTTTTAG 59.504 33.333 0.00 0.00 0.00 1.85
1478 1671 7.279758 CAGGAGCCAATTCTGTTTTTGTTTTTA 59.720 33.333 0.00 0.00 0.00 1.52
1479 1672 6.093909 CAGGAGCCAATTCTGTTTTTGTTTTT 59.906 34.615 0.00 0.00 0.00 1.94
1480 1673 5.585844 CAGGAGCCAATTCTGTTTTTGTTTT 59.414 36.000 0.00 0.00 0.00 2.43
1481 1674 5.104982 TCAGGAGCCAATTCTGTTTTTGTTT 60.105 36.000 0.00 0.00 0.00 2.83
1482 1675 4.405358 TCAGGAGCCAATTCTGTTTTTGTT 59.595 37.500 0.00 0.00 0.00 2.83
1483 1676 3.960102 TCAGGAGCCAATTCTGTTTTTGT 59.040 39.130 0.00 0.00 0.00 2.83
1484 1677 4.589216 TCAGGAGCCAATTCTGTTTTTG 57.411 40.909 0.00 0.00 0.00 2.44
1485 1678 4.895297 TCTTCAGGAGCCAATTCTGTTTTT 59.105 37.500 0.00 0.00 0.00 1.94
1486 1679 4.473444 TCTTCAGGAGCCAATTCTGTTTT 58.527 39.130 0.00 0.00 0.00 2.43
1487 1680 4.104383 TCTTCAGGAGCCAATTCTGTTT 57.896 40.909 0.00 0.00 0.00 2.83
1488 1681 3.795688 TCTTCAGGAGCCAATTCTGTT 57.204 42.857 0.00 0.00 0.00 3.16
1489 1682 4.313020 AATCTTCAGGAGCCAATTCTGT 57.687 40.909 0.00 0.00 0.00 3.41
1490 1683 4.142227 CCAAATCTTCAGGAGCCAATTCTG 60.142 45.833 0.00 0.00 0.00 3.02
1491 1684 4.021916 CCAAATCTTCAGGAGCCAATTCT 58.978 43.478 0.00 0.00 0.00 2.40
1492 1685 3.766051 ACCAAATCTTCAGGAGCCAATTC 59.234 43.478 0.00 0.00 0.00 2.17
1493 1686 3.782992 ACCAAATCTTCAGGAGCCAATT 58.217 40.909 0.00 0.00 0.00 2.32
1494 1687 3.463048 ACCAAATCTTCAGGAGCCAAT 57.537 42.857 0.00 0.00 0.00 3.16
1495 1688 2.978156 ACCAAATCTTCAGGAGCCAA 57.022 45.000 0.00 0.00 0.00 4.52
1496 1689 2.108075 TGAACCAAATCTTCAGGAGCCA 59.892 45.455 0.00 0.00 0.00 4.75
1497 1690 2.751806 CTGAACCAAATCTTCAGGAGCC 59.248 50.000 0.95 0.00 40.64 4.70
1499 1692 6.314896 GTGATACTGAACCAAATCTTCAGGAG 59.685 42.308 11.74 0.00 46.12 3.69
1501 1694 5.939883 TGTGATACTGAACCAAATCTTCAGG 59.060 40.000 11.74 0.00 46.12 3.86
1535 1732 4.695455 GTGCTTGACTAGGAACAGCATAAA 59.305 41.667 10.28 0.00 33.32 1.40
1552 1749 3.125316 CAGGAAACCAACATTGTGCTTG 58.875 45.455 0.00 0.00 0.00 4.01
1558 1762 9.487790 AAATAACAATACAGGAAACCAACATTG 57.512 29.630 0.00 0.00 0.00 2.82
1562 1766 9.968870 TGTAAAATAACAATACAGGAAACCAAC 57.031 29.630 0.00 0.00 0.00 3.77
1596 1822 5.790593 TCTACCAACAGAAGATACAACACC 58.209 41.667 0.00 0.00 0.00 4.16
1624 1857 6.560253 TTACCTTCTTGTCAGAAAGCATTC 57.440 37.500 0.00 0.00 38.63 2.67
1666 1900 4.025858 ATGGTGGCTCTGCGTGCT 62.026 61.111 0.00 0.00 0.00 4.40
1778 2012 0.470833 CTCCCCAGACTCCGGATCAT 60.471 60.000 3.57 0.00 0.00 2.45
1808 2042 4.118410 CACTCTTCAGAATCCATCCTTCG 58.882 47.826 0.00 0.00 0.00 3.79
1830 2064 3.076621 TCTGAACATGAATGTCCAGTGC 58.923 45.455 9.18 0.00 42.82 4.40
1831 2065 4.377738 CGTTCTGAACATGAATGTCCAGTG 60.378 45.833 19.56 0.00 42.82 3.66
1832 2066 3.748048 CGTTCTGAACATGAATGTCCAGT 59.252 43.478 19.56 0.00 42.82 4.00
1833 2067 3.996363 TCGTTCTGAACATGAATGTCCAG 59.004 43.478 19.56 3.45 43.51 3.86
1842 2077 2.738846 CCTTCCTGTCGTTCTGAACATG 59.261 50.000 19.56 5.35 0.00 3.21
1873 2115 4.060205 TCCTTCTGTACGCTTTTTACCAC 58.940 43.478 0.00 0.00 0.00 4.16
1888 2141 4.292186 TGTCATTCCCTCTTTCCTTCTG 57.708 45.455 0.00 0.00 0.00 3.02
1898 2154 1.896220 TGTGCTGTTGTCATTCCCTC 58.104 50.000 0.00 0.00 0.00 4.30
1922 2188 2.607187 ACACATGCGTACTCTTGCTAC 58.393 47.619 0.00 0.00 0.00 3.58
1926 2192 5.519927 TGAATCATACACATGCGTACTCTTG 59.480 40.000 0.00 0.00 31.73 3.02
1934 2200 5.464389 TCATCTTCTGAATCATACACATGCG 59.536 40.000 0.00 0.00 31.73 4.73
1940 2206 9.117183 CCTCAAAATCATCTTCTGAATCATACA 57.883 33.333 0.00 0.00 37.44 2.29
1961 2227 2.506644 TCATCATCATGGTCAGCCTCAA 59.493 45.455 0.00 0.00 35.27 3.02
1966 2232 4.936411 CCTATTCTCATCATCATGGTCAGC 59.064 45.833 0.00 0.00 0.00 4.26
1986 2252 7.176690 GGATTTCTTCATGTGTTTCTTTCCCTA 59.823 37.037 0.00 0.00 0.00 3.53
2036 2304 5.352569 AGTTGCCTTCTTATGAACAATCTCG 59.647 40.000 0.00 0.00 0.00 4.04
2082 2350 7.315142 TCATCTCCAACAATTAAAAGCACATC 58.685 34.615 0.00 0.00 0.00 3.06
2083 2351 7.230849 TCATCTCCAACAATTAAAAGCACAT 57.769 32.000 0.00 0.00 0.00 3.21
2154 2422 0.809636 TATGCACCGACAATGGCTCG 60.810 55.000 0.00 0.00 0.00 5.03
2155 2423 1.597742 ATATGCACCGACAATGGCTC 58.402 50.000 0.00 0.00 0.00 4.70
2156 2424 1.677576 CAATATGCACCGACAATGGCT 59.322 47.619 0.00 0.00 0.00 4.75
2157 2425 1.865248 GCAATATGCACCGACAATGGC 60.865 52.381 0.00 0.00 44.26 4.40
2158 2426 2.124011 GCAATATGCACCGACAATGG 57.876 50.000 0.00 0.00 44.26 3.16
2169 2437 3.514645 CTGACACCAAAAGGCAATATGC 58.485 45.455 0.00 0.00 44.08 3.14
2170 2438 3.763360 TCCTGACACCAAAAGGCAATATG 59.237 43.478 0.00 0.00 0.00 1.78
2173 2441 2.158475 TCTCCTGACACCAAAAGGCAAT 60.158 45.455 0.00 0.00 0.00 3.56
2184 2452 5.338365 GCAAATGATCAAATCTCCTGACAC 58.662 41.667 0.00 0.00 0.00 3.67
2189 2457 3.303049 GGGGCAAATGATCAAATCTCCT 58.697 45.455 0.00 0.00 0.00 3.69
2193 2461 1.136695 TGCGGGGCAAATGATCAAATC 59.863 47.619 0.00 0.00 34.76 2.17
2242 2510 9.569122 GGGCTAATCATGTAATCCTAACTAAAA 57.431 33.333 0.00 0.00 0.00 1.52
2247 2515 5.222048 TGGGGGCTAATCATGTAATCCTAAC 60.222 44.000 0.00 0.00 0.00 2.34
2272 2540 8.223100 GCAAATGATCAACAAATCCAAGTAAAC 58.777 33.333 0.00 0.00 0.00 2.01
2333 2601 8.435931 AGGTGCCACATGTATTATCTAGATTA 57.564 34.615 11.25 1.48 0.00 1.75
2374 2642 4.611943 TCTGCAGCAAATAGATACGAGTC 58.388 43.478 9.47 0.00 0.00 3.36
2375 2643 4.655762 TCTGCAGCAAATAGATACGAGT 57.344 40.909 9.47 0.00 0.00 4.18
2420 2696 2.047179 GCACCGTCCTCTTGGTCC 60.047 66.667 0.00 0.00 35.96 4.46
2461 2737 7.174946 TCCTATAAATGCTGCTACTTTAATGCC 59.825 37.037 0.00 0.00 0.00 4.40
2462 2738 8.099364 TCCTATAAATGCTGCTACTTTAATGC 57.901 34.615 0.00 0.00 0.00 3.56
2467 2743 9.025041 ACTTTTTCCTATAAATGCTGCTACTTT 57.975 29.630 0.00 1.23 0.00 2.66
2468 2744 8.581253 ACTTTTTCCTATAAATGCTGCTACTT 57.419 30.769 0.00 0.00 0.00 2.24
2469 2745 9.331282 CTACTTTTTCCTATAAATGCTGCTACT 57.669 33.333 0.00 0.00 0.00 2.57
2470 2746 8.070769 GCTACTTTTTCCTATAAATGCTGCTAC 58.929 37.037 0.00 0.00 0.00 3.58
2471 2747 7.773224 TGCTACTTTTTCCTATAAATGCTGCTA 59.227 33.333 0.00 0.00 0.00 3.49
2472 2748 6.603201 TGCTACTTTTTCCTATAAATGCTGCT 59.397 34.615 0.00 0.00 0.00 4.24
2473 2749 6.795399 TGCTACTTTTTCCTATAAATGCTGC 58.205 36.000 0.00 0.00 0.00 5.25
2474 2750 6.914757 GCTGCTACTTTTTCCTATAAATGCTG 59.085 38.462 0.00 0.00 0.00 4.41
2475 2751 6.603201 TGCTGCTACTTTTTCCTATAAATGCT 59.397 34.615 0.00 0.00 0.00 3.79
2476 2752 6.795399 TGCTGCTACTTTTTCCTATAAATGC 58.205 36.000 0.00 0.00 0.00 3.56
2477 2753 9.807649 AAATGCTGCTACTTTTTCCTATAAATG 57.192 29.630 0.00 0.00 0.00 2.32
2545 2821 8.729756 TGACATCAAATTGGTATACTGTGAAAG 58.270 33.333 2.25 0.00 0.00 2.62
2631 2907 9.961265 CCGTGAATAAGTGTACTTCTATATTCA 57.039 33.333 12.95 12.95 36.05 2.57
2634 2910 9.128404 TGTCCGTGAATAAGTGTACTTCTATAT 57.872 33.333 0.00 0.00 37.40 0.86
2635 2911 8.510243 TGTCCGTGAATAAGTGTACTTCTATA 57.490 34.615 0.00 0.00 37.40 1.31
2641 4438 4.765856 ACTCTGTCCGTGAATAAGTGTACT 59.234 41.667 0.00 0.00 0.00 2.73
2665 4462 9.601810 TCCTGAAACTAGATATATACATGGTGT 57.398 33.333 0.00 0.00 0.00 4.16
2681 4478 7.732976 GCATCTCTGCTTGTTTCCTGAAACTA 61.733 42.308 20.05 13.48 45.71 2.24
2682 4479 7.001657 GCATCTCTGCTTGTTTCCTGAAACT 62.002 44.000 20.05 0.00 45.71 2.66
2683 4480 4.850134 GCATCTCTGCTTGTTTCCTGAAAC 60.850 45.833 14.34 14.34 45.72 2.78
2684 4481 3.254166 GCATCTCTGCTTGTTTCCTGAAA 59.746 43.478 0.00 0.00 45.32 2.69
2685 4482 2.816087 GCATCTCTGCTTGTTTCCTGAA 59.184 45.455 0.00 0.00 45.32 3.02
2686 4483 2.430465 GCATCTCTGCTTGTTTCCTGA 58.570 47.619 0.00 0.00 45.32 3.86
2687 4484 2.915738 GCATCTCTGCTTGTTTCCTG 57.084 50.000 0.00 0.00 45.32 3.86
2693 4490 9.623281 ACTACACAGTAATGCATCTCTGCTTGT 62.623 40.741 22.54 21.22 40.36 3.16
2694 4491 7.343645 ACTACACAGTAATGCATCTCTGCTTG 61.344 42.308 22.54 18.16 40.36 4.01
2695 4492 5.337894 ACTACACAGTAATGCATCTCTGCTT 60.338 40.000 22.54 15.36 40.36 3.91
2696 4493 4.161189 ACTACACAGTAATGCATCTCTGCT 59.839 41.667 22.54 14.40 40.36 4.24
2697 4494 4.269603 CACTACACAGTAATGCATCTCTGC 59.730 45.833 22.54 4.34 40.23 4.26
2698 4495 4.269603 GCACTACACAGTAATGCATCTCTG 59.730 45.833 21.60 21.60 32.21 3.35
2699 4496 4.161189 AGCACTACACAGTAATGCATCTCT 59.839 41.667 12.30 0.00 32.21 3.10
2700 4497 4.437239 AGCACTACACAGTAATGCATCTC 58.563 43.478 12.30 0.00 32.21 2.75
2701 4498 4.478206 AGCACTACACAGTAATGCATCT 57.522 40.909 12.30 0.00 32.21 2.90
2702 4499 6.851222 ATAAGCACTACACAGTAATGCATC 57.149 37.500 12.30 0.00 32.21 3.91
2703 4500 8.731275 TTAATAAGCACTACACAGTAATGCAT 57.269 30.769 12.30 0.00 32.21 3.96
2704 4501 8.731275 ATTAATAAGCACTACACAGTAATGCA 57.269 30.769 12.30 0.00 32.21 3.96
2705 4502 9.651718 GAATTAATAAGCACTACACAGTAATGC 57.348 33.333 2.70 2.70 32.21 3.56
2708 4505 9.938280 ACAGAATTAATAAGCACTACACAGTAA 57.062 29.630 0.00 0.00 32.21 2.24
2710 4507 9.938280 TTACAGAATTAATAAGCACTACACAGT 57.062 29.630 0.00 0.00 34.42 3.55
2726 4523 8.623903 GCATGTCAAATCCTGATTACAGAATTA 58.376 33.333 0.00 0.00 46.03 1.40
2727 4524 7.417116 GGCATGTCAAATCCTGATTACAGAATT 60.417 37.037 0.00 0.00 46.03 2.17
2728 4525 6.040166 GGCATGTCAAATCCTGATTACAGAAT 59.960 38.462 0.00 0.00 46.03 2.40
2729 4526 5.357878 GGCATGTCAAATCCTGATTACAGAA 59.642 40.000 0.00 0.00 46.03 3.02
2730 4527 4.883585 GGCATGTCAAATCCTGATTACAGA 59.116 41.667 0.00 0.00 46.03 3.41
2731 4528 4.641541 TGGCATGTCAAATCCTGATTACAG 59.358 41.667 0.00 0.00 43.12 2.74
2732 4529 4.598022 TGGCATGTCAAATCCTGATTACA 58.402 39.130 0.00 0.00 36.14 2.41
2733 4530 5.581126 TTGGCATGTCAAATCCTGATTAC 57.419 39.130 11.03 0.00 36.14 1.89
2734 4531 7.341512 TGTTATTGGCATGTCAAATCCTGATTA 59.658 33.333 18.05 0.00 36.14 1.75
2735 4532 6.154877 TGTTATTGGCATGTCAAATCCTGATT 59.845 34.615 18.05 0.00 36.14 2.57
2736 4533 5.657745 TGTTATTGGCATGTCAAATCCTGAT 59.342 36.000 18.05 0.68 36.14 2.90
2737 4534 5.015515 TGTTATTGGCATGTCAAATCCTGA 58.984 37.500 18.05 0.00 0.00 3.86
2738 4535 5.327616 TGTTATTGGCATGTCAAATCCTG 57.672 39.130 18.05 0.00 0.00 3.86
2739 4536 5.999205 TTGTTATTGGCATGTCAAATCCT 57.001 34.783 18.05 2.69 0.00 3.24
2740 4537 6.397272 TCTTTGTTATTGGCATGTCAAATCC 58.603 36.000 18.05 7.94 0.00 3.01
2741 4538 6.532657 CCTCTTTGTTATTGGCATGTCAAATC 59.467 38.462 18.05 10.66 0.00 2.17
2742 4539 6.400568 CCTCTTTGTTATTGGCATGTCAAAT 58.599 36.000 18.05 8.37 0.00 2.32
2743 4540 5.782047 CCTCTTTGTTATTGGCATGTCAAA 58.218 37.500 18.05 3.85 0.00 2.69
2744 4541 4.321899 GCCTCTTTGTTATTGGCATGTCAA 60.322 41.667 16.33 16.33 42.79 3.18
2745 4542 3.193267 GCCTCTTTGTTATTGGCATGTCA 59.807 43.478 0.00 0.00 42.79 3.58
2746 4543 3.445096 AGCCTCTTTGTTATTGGCATGTC 59.555 43.478 0.00 0.00 45.42 3.06
2747 4544 3.434309 AGCCTCTTTGTTATTGGCATGT 58.566 40.909 0.00 0.00 45.42 3.21
2748 4545 4.460948 AAGCCTCTTTGTTATTGGCATG 57.539 40.909 0.00 0.00 45.42 4.06
2749 4546 7.229506 GTCTATAAGCCTCTTTGTTATTGGCAT 59.770 37.037 0.00 0.00 45.42 4.40
2750 4547 6.542370 GTCTATAAGCCTCTTTGTTATTGGCA 59.458 38.462 0.00 0.00 45.42 4.92
2751 4548 6.542370 TGTCTATAAGCCTCTTTGTTATTGGC 59.458 38.462 0.00 0.00 43.52 4.52
2752 4549 8.682936 ATGTCTATAAGCCTCTTTGTTATTGG 57.317 34.615 0.00 0.00 0.00 3.16
2753 4550 9.553064 AGATGTCTATAAGCCTCTTTGTTATTG 57.447 33.333 0.00 0.00 0.00 1.90
2754 4551 9.771534 GAGATGTCTATAAGCCTCTTTGTTATT 57.228 33.333 0.00 0.00 0.00 1.40
2755 4552 8.928448 TGAGATGTCTATAAGCCTCTTTGTTAT 58.072 33.333 0.00 0.00 0.00 1.89
2756 4553 8.306313 TGAGATGTCTATAAGCCTCTTTGTTA 57.694 34.615 0.00 0.00 0.00 2.41
2757 4554 7.187824 TGAGATGTCTATAAGCCTCTTTGTT 57.812 36.000 0.00 0.00 0.00 2.83
2758 4555 6.798427 TGAGATGTCTATAAGCCTCTTTGT 57.202 37.500 0.00 0.00 0.00 2.83
2759 4556 7.599621 CAGATGAGATGTCTATAAGCCTCTTTG 59.400 40.741 0.00 0.00 0.00 2.77
2760 4557 7.289782 ACAGATGAGATGTCTATAAGCCTCTTT 59.710 37.037 0.00 0.00 0.00 2.52
2761 4558 6.782000 ACAGATGAGATGTCTATAAGCCTCTT 59.218 38.462 0.00 0.00 0.00 2.85
2762 4559 6.314120 ACAGATGAGATGTCTATAAGCCTCT 58.686 40.000 0.00 0.00 0.00 3.69
2763 4560 6.588719 ACAGATGAGATGTCTATAAGCCTC 57.411 41.667 0.00 0.00 0.00 4.70
2764 4561 8.115384 AGATACAGATGAGATGTCTATAAGCCT 58.885 37.037 0.00 0.00 32.02 4.58
2765 4562 8.190122 CAGATACAGATGAGATGTCTATAAGCC 58.810 40.741 0.00 0.00 32.02 4.35
2766 4563 8.739039 ACAGATACAGATGAGATGTCTATAAGC 58.261 37.037 0.00 0.00 32.02 3.09
2772 4569 8.938801 AGATAACAGATACAGATGAGATGTCT 57.061 34.615 0.00 0.00 32.02 3.41
2774 4571 9.806448 AGTAGATAACAGATACAGATGAGATGT 57.194 33.333 0.00 0.00 34.62 3.06
2776 4573 9.461312 GGAGTAGATAACAGATACAGATGAGAT 57.539 37.037 0.00 0.00 0.00 2.75
2777 4574 8.664992 AGGAGTAGATAACAGATACAGATGAGA 58.335 37.037 0.00 0.00 0.00 3.27
2778 4575 8.862325 AGGAGTAGATAACAGATACAGATGAG 57.138 38.462 0.00 0.00 0.00 2.90
2779 4576 9.727859 GTAGGAGTAGATAACAGATACAGATGA 57.272 37.037 0.00 0.00 0.00 2.92
2780 4577 9.733556 AGTAGGAGTAGATAACAGATACAGATG 57.266 37.037 0.00 0.00 0.00 2.90
2797 4594 9.775854 CATGCTTTAGTACTACTAGTAGGAGTA 57.224 37.037 29.05 25.17 37.49 2.59
2798 4595 7.720515 CCATGCTTTAGTACTACTAGTAGGAGT 59.279 40.741 29.05 26.13 37.49 3.85
2799 4596 8.101654 CCATGCTTTAGTACTACTAGTAGGAG 57.898 42.308 29.05 17.85 37.49 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.