Multiple sequence alignment - TraesCS5D01G503800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G503800 chr5D 100.000 5763 0 0 1 5763 530433392 530427630 0.000000e+00 10643.0
1 TraesCS5D01G503800 chr5D 82.058 758 96 18 11 735 525971950 525971200 1.370000e-170 610.0
2 TraesCS5D01G503800 chr5B 93.762 4088 158 31 855 4911 669677865 669673844 0.000000e+00 6047.0
3 TraesCS5D01G503800 chr5B 81.067 750 100 16 12 732 660655320 660654584 1.400000e-155 560.0
4 TraesCS5D01G503800 chr5B 85.468 406 51 6 5363 5763 669673231 669672829 3.210000e-112 416.0
5 TraesCS5D01G503800 chr5B 78.305 590 94 13 36 597 245979033 245979616 3.300000e-92 350.0
6 TraesCS5D01G503800 chr5B 92.500 120 9 0 4964 5083 418373423 418373542 7.680000e-39 172.0
7 TraesCS5D01G503800 chr5A 92.868 2566 144 18 2386 4934 658676364 658673821 0.000000e+00 3688.0
8 TraesCS5D01G503800 chr5A 87.304 1528 119 39 834 2352 658677931 658676470 0.000000e+00 1677.0
9 TraesCS5D01G503800 chr5A 87.214 524 47 9 5245 5763 658673652 658673144 3.870000e-161 579.0
10 TraesCS5D01G503800 chr5A 76.824 699 122 26 67 735 315963101 315962413 1.970000e-94 357.0
11 TraesCS5D01G503800 chr4D 83.758 745 94 17 4 732 28547083 28546350 0.000000e+00 680.0
12 TraesCS5D01G503800 chr4D 82.638 743 97 13 22 735 28669713 28668974 3.790000e-176 628.0
13 TraesCS5D01G503800 chr4D 77.570 642 106 23 89 721 50391677 50391065 2.550000e-93 353.0
14 TraesCS5D01G503800 chr3B 82.529 767 92 19 1 738 604279277 604280030 2.270000e-178 636.0
15 TraesCS5D01G503800 chr3B 80.392 765 99 23 10 735 526194428 526193676 8.500000e-148 534.0
16 TraesCS5D01G503800 chr2D 87.992 533 48 7 4391 4911 88302002 88301474 2.950000e-172 616.0
17 TraesCS5D01G503800 chr2D 86.667 360 44 4 5382 5739 88294293 88293936 4.180000e-106 396.0
18 TraesCS5D01G503800 chr2D 85.602 382 49 2 11 392 413943775 413943400 4.180000e-106 396.0
19 TraesCS5D01G503800 chr2D 90.667 225 21 0 5539 5763 88294037 88293813 3.380000e-77 300.0
20 TraesCS5D01G503800 chr2D 86.614 127 11 4 5201 5322 88294445 88294320 1.010000e-27 135.0
21 TraesCS5D01G503800 chr2D 95.890 73 3 0 4135 4207 88309036 88308964 1.010000e-22 119.0
22 TraesCS5D01G503800 chr2B 81.928 747 104 12 12 730 487227526 487226783 2.300000e-168 603.0
23 TraesCS5D01G503800 chr2B 81.395 645 81 24 5105 5739 141565017 141564402 1.870000e-134 490.0
24 TraesCS5D01G503800 chr2B 90.667 225 21 0 5539 5763 141564503 141564279 3.380000e-77 300.0
25 TraesCS5D01G503800 chr7B 81.696 743 99 15 22 735 680157014 680156280 8.320000e-163 584.0
26 TraesCS5D01G503800 chr3D 82.336 685 74 20 93 735 400668503 400667824 8.440000e-153 551.0
27 TraesCS5D01G503800 chr3D 77.941 680 113 18 83 732 103349456 103350128 1.950000e-104 390.0
28 TraesCS5D01G503800 chr3D 94.059 101 6 0 4962 5062 71512912 71512812 2.780000e-33 154.0
29 TraesCS5D01G503800 chr4A 80.718 752 103 15 11 732 574923467 574924206 1.090000e-151 547.0
30 TraesCS5D01G503800 chr4A 83.747 363 52 7 33 393 546392374 546392731 2.570000e-88 337.0
31 TraesCS5D01G503800 chr4A 85.538 325 38 6 1276 1597 410038894 410039212 1.200000e-86 331.0
32 TraesCS5D01G503800 chr7A 83.019 636 74 13 127 732 39055156 39055787 3.930000e-151 545.0
33 TraesCS5D01G503800 chr7A 86.120 317 32 7 1288 1597 211062763 211062452 1.200000e-86 331.0
34 TraesCS5D01G503800 chr7A 85.220 318 34 7 1288 1597 512540049 512540361 1.210000e-81 315.0
35 TraesCS5D01G503800 chr7A 83.962 212 22 8 1022 1233 211062985 211062786 5.890000e-45 193.0
36 TraesCS5D01G503800 chr2A 83.511 564 57 21 5185 5739 88671648 88671112 1.440000e-135 494.0
37 TraesCS5D01G503800 chr2A 79.970 659 80 22 4255 4899 88672483 88671863 6.860000e-119 438.0
38 TraesCS5D01G503800 chr2A 85.124 363 21 14 3848 4207 88672939 88672607 1.990000e-89 340.0
39 TraesCS5D01G503800 chr2A 89.778 225 23 0 5539 5763 88671213 88670989 7.310000e-74 289.0
40 TraesCS5D01G503800 chr2A 82.775 209 23 9 1022 1230 107525416 107525611 2.130000e-39 174.0
41 TraesCS5D01G503800 chr2A 82.775 209 23 9 1022 1230 107734056 107734251 2.130000e-39 174.0
42 TraesCS5D01G503800 chr2A 94.059 101 6 0 4963 5063 68155923 68155823 2.780000e-33 154.0
43 TraesCS5D01G503800 chr2A 94.059 101 6 0 4963 5063 728602564 728602664 2.780000e-33 154.0
44 TraesCS5D01G503800 chr3A 85.279 394 52 6 1 392 600031924 600032313 8.990000e-108 401.0
45 TraesCS5D01G503800 chr3A 84.591 318 25 12 1288 1597 688933494 688933193 1.570000e-75 294.0
46 TraesCS5D01G503800 chr3A 85.377 212 19 8 1022 1233 688933717 688933518 5.850000e-50 209.0
47 TraesCS5D01G503800 chr4B 95.000 100 5 0 4963 5062 646855893 646855992 2.150000e-34 158.0
48 TraesCS5D01G503800 chr4B 86.260 131 15 3 4958 5087 610759237 610759109 7.790000e-29 139.0
49 TraesCS5D01G503800 chr7D 94.898 98 5 0 4966 5063 168579919 168580016 2.780000e-33 154.0
50 TraesCS5D01G503800 chr6B 94.898 98 5 0 4965 5062 710231545 710231642 2.780000e-33 154.0
51 TraesCS5D01G503800 chr6B 97.059 34 1 0 5050 5083 149418726 149418759 2.240000e-04 58.4
52 TraesCS5D01G503800 chr1A 86.364 132 14 3 4937 5064 474641806 474641675 2.160000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G503800 chr5D 530427630 530433392 5762 True 10643.000000 10643 100.000000 1 5763 1 chr5D.!!$R2 5762
1 TraesCS5D01G503800 chr5D 525971200 525971950 750 True 610.000000 610 82.058000 11 735 1 chr5D.!!$R1 724
2 TraesCS5D01G503800 chr5B 669672829 669677865 5036 True 3231.500000 6047 89.615000 855 5763 2 chr5B.!!$R2 4908
3 TraesCS5D01G503800 chr5B 660654584 660655320 736 True 560.000000 560 81.067000 12 732 1 chr5B.!!$R1 720
4 TraesCS5D01G503800 chr5B 245979033 245979616 583 False 350.000000 350 78.305000 36 597 1 chr5B.!!$F1 561
5 TraesCS5D01G503800 chr5A 658673144 658677931 4787 True 1981.333333 3688 89.128667 834 5763 3 chr5A.!!$R2 4929
6 TraesCS5D01G503800 chr5A 315962413 315963101 688 True 357.000000 357 76.824000 67 735 1 chr5A.!!$R1 668
7 TraesCS5D01G503800 chr4D 28546350 28547083 733 True 680.000000 680 83.758000 4 732 1 chr4D.!!$R1 728
8 TraesCS5D01G503800 chr4D 28668974 28669713 739 True 628.000000 628 82.638000 22 735 1 chr4D.!!$R2 713
9 TraesCS5D01G503800 chr4D 50391065 50391677 612 True 353.000000 353 77.570000 89 721 1 chr4D.!!$R3 632
10 TraesCS5D01G503800 chr3B 604279277 604280030 753 False 636.000000 636 82.529000 1 738 1 chr3B.!!$F1 737
11 TraesCS5D01G503800 chr3B 526193676 526194428 752 True 534.000000 534 80.392000 10 735 1 chr3B.!!$R1 725
12 TraesCS5D01G503800 chr2D 88301474 88302002 528 True 616.000000 616 87.992000 4391 4911 1 chr2D.!!$R1 520
13 TraesCS5D01G503800 chr2D 88293813 88294445 632 True 277.000000 396 87.982667 5201 5763 3 chr2D.!!$R4 562
14 TraesCS5D01G503800 chr2B 487226783 487227526 743 True 603.000000 603 81.928000 12 730 1 chr2B.!!$R1 718
15 TraesCS5D01G503800 chr2B 141564279 141565017 738 True 395.000000 490 86.031000 5105 5763 2 chr2B.!!$R2 658
16 TraesCS5D01G503800 chr7B 680156280 680157014 734 True 584.000000 584 81.696000 22 735 1 chr7B.!!$R1 713
17 TraesCS5D01G503800 chr3D 400667824 400668503 679 True 551.000000 551 82.336000 93 735 1 chr3D.!!$R2 642
18 TraesCS5D01G503800 chr3D 103349456 103350128 672 False 390.000000 390 77.941000 83 732 1 chr3D.!!$F1 649
19 TraesCS5D01G503800 chr4A 574923467 574924206 739 False 547.000000 547 80.718000 11 732 1 chr4A.!!$F3 721
20 TraesCS5D01G503800 chr7A 39055156 39055787 631 False 545.000000 545 83.019000 127 732 1 chr7A.!!$F1 605
21 TraesCS5D01G503800 chr7A 211062452 211062985 533 True 262.000000 331 85.041000 1022 1597 2 chr7A.!!$R1 575
22 TraesCS5D01G503800 chr2A 88670989 88672939 1950 True 390.250000 494 84.595750 3848 5763 4 chr2A.!!$R2 1915
23 TraesCS5D01G503800 chr3A 688933193 688933717 524 True 251.500000 294 84.984000 1022 1597 2 chr3A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 631 0.461163 AACAAACCCGCTTTGCAACC 60.461 50.000 0.00 0.00 42.87 3.77 F
1468 1546 0.112606 TCTTCTCCGACCACCTCACT 59.887 55.000 0.00 0.00 0.00 3.41 F
1604 1682 0.249120 CCCACACAGCCTCACGATTA 59.751 55.000 0.00 0.00 0.00 1.75 F
1605 1683 1.338674 CCCACACAGCCTCACGATTAA 60.339 52.381 0.00 0.00 0.00 1.40 F
2288 2374 1.403780 GGCCTCTACAATGACGTCGTT 60.404 52.381 17.24 17.24 0.00 3.85 F
3481 3653 0.027586 GTGACGAAAAACAGCGTGCT 59.972 50.000 0.00 0.00 41.34 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 2124 0.036164 TCCACAATGGACCCGTTCAG 59.964 55.000 0.00 0.0 42.67 3.02 R
2890 3062 3.016031 AGGATTGACAATACGCAATGCA 58.984 40.909 5.91 0.0 42.85 3.96 R
3455 3627 3.726486 CGCTGTTTTTCGTCACTCAACAA 60.726 43.478 0.00 0.0 0.00 2.83 R
3481 3653 6.239217 AGATCTACCAACATAATGTGCTCA 57.761 37.500 0.00 0.0 0.00 4.26 R
3906 4082 2.610833 CGAGCTAATGTGCATGACATGT 59.389 45.455 16.62 0.0 45.12 3.21 R
5331 5976 0.323302 TGTTTGGCGCTAGATGTCCA 59.677 50.000 7.64 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.612726 GGCTGCTCTCAGGATGTTTGT 60.613 52.381 0.00 0.00 40.65 2.83
112 113 3.071874 TGCAGAAATTCGGATTGGAGT 57.928 42.857 0.00 0.00 0.00 3.85
159 161 3.402110 CAACTTAGATGCACTGTGGTGA 58.598 45.455 10.21 0.00 45.61 4.02
170 172 1.065709 ACTGTGGTGAAAGGTGTTCGT 60.066 47.619 0.00 0.00 0.00 3.85
239 241 1.171308 GCAATTGGAGCAGCAAGAGA 58.829 50.000 7.72 0.00 0.00 3.10
247 249 2.652590 GAGCAGCAAGAGAATTCCCAT 58.347 47.619 0.65 0.00 0.00 4.00
252 254 5.065914 GCAGCAAGAGAATTCCCATGTATA 58.934 41.667 0.65 0.00 0.00 1.47
313 315 1.199615 CCCAAAAGGTTTGTGTGGGT 58.800 50.000 0.00 0.00 43.44 4.51
393 408 4.040217 ACTTGTGGATTTGGCATGCTTTTA 59.960 37.500 18.92 1.09 0.00 1.52
409 446 7.863877 GCATGCTTTTATATGACATCAATGTGA 59.136 33.333 11.37 0.00 41.95 3.58
412 449 9.122779 TGCTTTTATATGACATCAATGTGATCA 57.877 29.630 0.00 0.00 41.95 2.92
428 472 6.135290 TGTGATCAAACTTTGTTCAAGAGG 57.865 37.500 14.24 0.00 40.07 3.69
434 478 2.225467 ACTTTGTTCAAGAGGCTCTGC 58.775 47.619 19.53 9.48 36.21 4.26
435 479 2.224606 CTTTGTTCAAGAGGCTCTGCA 58.775 47.619 19.53 11.97 33.80 4.41
438 482 0.514691 GTTCAAGAGGCTCTGCAACG 59.485 55.000 19.53 4.88 0.00 4.10
454 499 3.072468 CGGGGAAGCTCCACCGTA 61.072 66.667 4.99 0.00 41.98 4.02
521 566 2.826128 TGCCGATGGTATCTATCCTCAC 59.174 50.000 0.00 0.00 0.00 3.51
522 567 2.826128 GCCGATGGTATCTATCCTCACA 59.174 50.000 0.00 0.00 0.00 3.58
541 586 2.719354 GGCGGCGTTTTGTGAAGT 59.281 55.556 9.37 0.00 0.00 3.01
585 631 0.461163 AACAAACCCGCTTTGCAACC 60.461 50.000 0.00 0.00 42.87 3.77
653 708 2.819608 TCCAAGCTTGTTGGAGTATTGC 59.180 45.455 24.35 0.00 43.17 3.56
671 727 1.875813 CTCGTGGAGCTGCGATGAC 60.876 63.158 0.00 0.00 36.50 3.06
735 792 6.260714 TGTTATCTTGCGCAACATGATTATCT 59.739 34.615 23.25 7.24 41.84 1.98
736 793 4.541085 TCTTGCGCAACATGATTATCTG 57.459 40.909 21.02 4.92 0.00 2.90
737 794 4.190772 TCTTGCGCAACATGATTATCTGA 58.809 39.130 21.02 7.49 0.00 3.27
738 795 3.950087 TGCGCAACATGATTATCTGAC 57.050 42.857 8.16 0.00 0.00 3.51
739 796 3.269178 TGCGCAACATGATTATCTGACA 58.731 40.909 8.16 0.00 0.00 3.58
740 797 3.063861 TGCGCAACATGATTATCTGACAC 59.936 43.478 8.16 0.00 0.00 3.67
741 798 3.063861 GCGCAACATGATTATCTGACACA 59.936 43.478 0.30 0.00 0.00 3.72
742 799 4.581493 CGCAACATGATTATCTGACACAC 58.419 43.478 0.00 0.00 0.00 3.82
743 800 4.093261 CGCAACATGATTATCTGACACACA 59.907 41.667 0.00 0.00 0.00 3.72
744 801 5.220719 CGCAACATGATTATCTGACACACAT 60.221 40.000 0.00 0.00 0.00 3.21
745 802 6.018832 CGCAACATGATTATCTGACACACATA 60.019 38.462 0.00 0.00 0.00 2.29
746 803 7.307573 CGCAACATGATTATCTGACACACATAT 60.308 37.037 0.00 0.00 0.00 1.78
747 804 7.801783 GCAACATGATTATCTGACACACATATG 59.198 37.037 0.00 0.00 0.00 1.78
748 805 7.974482 ACATGATTATCTGACACACATATGG 57.026 36.000 7.80 0.00 0.00 2.74
749 806 6.429078 ACATGATTATCTGACACACATATGGC 59.571 38.462 7.80 0.00 0.00 4.40
750 807 6.178607 TGATTATCTGACACACATATGGCT 57.821 37.500 7.80 0.00 0.00 4.75
751 808 7.301868 TGATTATCTGACACACATATGGCTA 57.698 36.000 7.80 0.00 0.00 3.93
752 809 7.910584 TGATTATCTGACACACATATGGCTAT 58.089 34.615 7.80 0.00 0.00 2.97
753 810 7.820872 TGATTATCTGACACACATATGGCTATG 59.179 37.037 7.80 0.00 40.56 2.23
755 812 5.357742 TCTGACACACATATGGCTATGTT 57.642 39.130 7.80 0.00 44.42 2.71
756 813 5.744171 TCTGACACACATATGGCTATGTTT 58.256 37.500 7.80 0.00 44.42 2.83
757 814 5.585844 TCTGACACACATATGGCTATGTTTG 59.414 40.000 7.80 15.45 44.42 2.93
758 815 4.639755 TGACACACATATGGCTATGTTTGG 59.360 41.667 18.60 10.25 44.42 3.28
759 816 4.854173 ACACACATATGGCTATGTTTGGA 58.146 39.130 18.60 0.00 44.42 3.53
760 817 4.883585 ACACACATATGGCTATGTTTGGAG 59.116 41.667 18.60 3.04 44.42 3.86
761 818 3.885297 ACACATATGGCTATGTTTGGAGC 59.115 43.478 7.80 0.00 44.42 4.70
762 819 3.058708 CACATATGGCTATGTTTGGAGCG 60.059 47.826 7.80 0.00 44.42 5.03
763 820 3.181455 ACATATGGCTATGTTTGGAGCGA 60.181 43.478 7.80 0.00 44.42 4.93
764 821 1.959042 ATGGCTATGTTTGGAGCGAG 58.041 50.000 0.00 0.00 39.72 5.03
765 822 0.744414 TGGCTATGTTTGGAGCGAGC 60.744 55.000 0.00 0.00 39.72 5.03
766 823 0.462759 GGCTATGTTTGGAGCGAGCT 60.463 55.000 0.00 0.00 39.72 4.09
767 824 1.373570 GCTATGTTTGGAGCGAGCTT 58.626 50.000 0.00 0.00 0.00 3.74
768 825 1.740025 GCTATGTTTGGAGCGAGCTTT 59.260 47.619 0.00 0.00 0.00 3.51
769 826 2.936498 GCTATGTTTGGAGCGAGCTTTA 59.064 45.455 0.00 0.00 0.00 1.85
770 827 3.561725 GCTATGTTTGGAGCGAGCTTTAT 59.438 43.478 0.00 0.00 0.00 1.40
771 828 4.750098 GCTATGTTTGGAGCGAGCTTTATA 59.250 41.667 0.00 0.00 0.00 0.98
772 829 5.409826 GCTATGTTTGGAGCGAGCTTTATAT 59.590 40.000 0.00 0.00 0.00 0.86
773 830 5.931441 ATGTTTGGAGCGAGCTTTATATC 57.069 39.130 0.00 0.00 0.00 1.63
774 831 4.765273 TGTTTGGAGCGAGCTTTATATCA 58.235 39.130 0.00 0.00 0.00 2.15
775 832 5.368145 TGTTTGGAGCGAGCTTTATATCAT 58.632 37.500 0.00 0.00 0.00 2.45
776 833 5.466728 TGTTTGGAGCGAGCTTTATATCATC 59.533 40.000 0.00 0.00 0.00 2.92
777 834 4.193826 TGGAGCGAGCTTTATATCATCC 57.806 45.455 0.00 0.00 0.00 3.51
778 835 3.578282 TGGAGCGAGCTTTATATCATCCA 59.422 43.478 0.00 0.00 31.79 3.41
779 836 4.223700 TGGAGCGAGCTTTATATCATCCAT 59.776 41.667 0.00 0.00 30.18 3.41
780 837 5.181748 GGAGCGAGCTTTATATCATCCATT 58.818 41.667 0.00 0.00 0.00 3.16
781 838 5.645497 GGAGCGAGCTTTATATCATCCATTT 59.355 40.000 0.00 0.00 0.00 2.32
782 839 6.818644 GGAGCGAGCTTTATATCATCCATTTA 59.181 38.462 0.00 0.00 0.00 1.40
783 840 7.497249 GGAGCGAGCTTTATATCATCCATTTAT 59.503 37.037 0.00 0.00 0.00 1.40
784 841 8.430801 AGCGAGCTTTATATCATCCATTTATC 57.569 34.615 0.00 0.00 0.00 1.75
785 842 8.043113 AGCGAGCTTTATATCATCCATTTATCA 58.957 33.333 0.00 0.00 0.00 2.15
786 843 8.333908 GCGAGCTTTATATCATCCATTTATCAG 58.666 37.037 0.00 0.00 0.00 2.90
787 844 9.376075 CGAGCTTTATATCATCCATTTATCAGT 57.624 33.333 0.00 0.00 0.00 3.41
798 855 9.919416 TCATCCATTTATCAGTTTTCTAATCCA 57.081 29.630 0.00 0.00 0.00 3.41
832 889 9.023962 TCAATACATAGCATAAATCAAATCCCC 57.976 33.333 0.00 0.00 0.00 4.81
837 894 7.290714 ACATAGCATAAATCAAATCCCCATTGT 59.709 33.333 0.00 0.00 0.00 2.71
841 898 7.337436 AGCATAAATCAAATCCCCATTGTTTTG 59.663 33.333 0.00 0.00 33.82 2.44
846 903 7.690952 ATCAAATCCCCATTGTTTTGATTTG 57.309 32.000 14.09 14.09 46.87 2.32
850 907 8.709272 AAATCCCCATTGTTTTGATTTGATTT 57.291 26.923 0.00 0.00 35.10 2.17
873 930 2.171237 TGCAGTCAGTCCCCATCTTATG 59.829 50.000 0.00 0.00 0.00 1.90
876 933 3.198635 CAGTCAGTCCCCATCTTATGTGT 59.801 47.826 0.00 0.00 0.00 3.72
990 1048 2.685388 CTCTCTCGCCACAGATAGTCAA 59.315 50.000 0.00 0.00 0.00 3.18
991 1049 3.089284 TCTCTCGCCACAGATAGTCAAA 58.911 45.455 0.00 0.00 0.00 2.69
994 1052 3.006430 TCTCGCCACAGATAGTCAAACAA 59.994 43.478 0.00 0.00 0.00 2.83
1230 1294 3.735029 GACGCCGTCGGTGAGTCT 61.735 66.667 30.66 8.70 40.69 3.24
1231 1295 3.664223 GACGCCGTCGGTGAGTCTC 62.664 68.421 30.66 14.07 40.69 3.36
1232 1296 4.477975 CGCCGTCGGTGAGTCTCC 62.478 72.222 20.30 0.82 34.74 3.71
1233 1297 3.063084 GCCGTCGGTGAGTCTCCT 61.063 66.667 13.94 0.00 0.00 3.69
1317 1389 0.864455 GCGCTGATTATCTGTGGCTC 59.136 55.000 13.09 0.00 0.00 4.70
1341 1413 1.209640 GACTGACCGACCGACTGAC 59.790 63.158 0.00 0.00 0.00 3.51
1344 1416 1.228033 TGACCGACCGACTGACTGA 60.228 57.895 0.00 0.00 0.00 3.41
1345 1417 0.820482 TGACCGACCGACTGACTGAA 60.820 55.000 0.00 0.00 0.00 3.02
1346 1418 0.526662 GACCGACCGACTGACTGAAT 59.473 55.000 0.00 0.00 0.00 2.57
1349 1421 1.340658 CGACCGACTGACTGAATGTG 58.659 55.000 0.00 0.00 0.00 3.21
1351 1423 0.320771 ACCGACTGACTGAATGTGGC 60.321 55.000 0.00 0.00 0.00 5.01
1352 1424 1.354337 CCGACTGACTGAATGTGGCG 61.354 60.000 0.00 0.00 0.00 5.69
1353 1425 0.667487 CGACTGACTGAATGTGGCGT 60.667 55.000 0.00 0.00 0.00 5.68
1354 1426 1.512926 GACTGACTGAATGTGGCGTT 58.487 50.000 0.00 0.00 0.00 4.84
1355 1427 1.195448 GACTGACTGAATGTGGCGTTG 59.805 52.381 0.00 0.00 0.00 4.10
1359 1431 0.662619 ACTGAATGTGGCGTTGTGTG 59.337 50.000 0.00 0.00 0.00 3.82
1360 1432 0.662619 CTGAATGTGGCGTTGTGTGT 59.337 50.000 0.00 0.00 0.00 3.72
1468 1546 0.112606 TCTTCTCCGACCACCTCACT 59.887 55.000 0.00 0.00 0.00 3.41
1492 1570 4.880537 CTCGCCTACCGCTGCCTG 62.881 72.222 0.00 0.00 36.73 4.85
1581 1659 1.779061 AATGTGGTTCGTCCCTGCCT 61.779 55.000 0.00 0.00 34.77 4.75
1584 1662 1.228124 TGGTTCGTCCCTGCCTTTG 60.228 57.895 0.00 0.00 34.77 2.77
1589 1667 2.991540 GTCCCTGCCTTTGCCCAC 60.992 66.667 0.00 0.00 36.33 4.61
1604 1682 0.249120 CCCACACAGCCTCACGATTA 59.751 55.000 0.00 0.00 0.00 1.75
1605 1683 1.338674 CCCACACAGCCTCACGATTAA 60.339 52.381 0.00 0.00 0.00 1.40
1639 1719 2.224305 CCATTCGTATCCTCCCCAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
1652 1732 4.009675 TCCCCAAGACAAAATCAGAATCG 58.990 43.478 0.00 0.00 0.00 3.34
1958 2043 9.461312 TTCATTACCTTAATGCTCTACAAATGT 57.539 29.630 1.67 0.00 43.97 2.71
2068 2154 2.181975 CCATTGTGGATGCCCTTTTCT 58.818 47.619 0.00 0.00 40.96 2.52
2104 2190 5.702670 GTGTGATCTTCATCCTTTGTTGAGA 59.297 40.000 0.00 0.00 0.00 3.27
2106 2192 5.936956 GTGATCTTCATCCTTTGTTGAGAGT 59.063 40.000 0.00 0.00 0.00 3.24
2118 2204 6.918022 CCTTTGTTGAGAGTTGGTTATGTTTC 59.082 38.462 0.00 0.00 0.00 2.78
2121 2207 7.639113 TGTTGAGAGTTGGTTATGTTTCTTT 57.361 32.000 0.00 0.00 0.00 2.52
2122 2208 8.062065 TGTTGAGAGTTGGTTATGTTTCTTTT 57.938 30.769 0.00 0.00 0.00 2.27
2123 2209 7.973388 TGTTGAGAGTTGGTTATGTTTCTTTTG 59.027 33.333 0.00 0.00 0.00 2.44
2124 2210 7.639113 TGAGAGTTGGTTATGTTTCTTTTGT 57.361 32.000 0.00 0.00 0.00 2.83
2219 2305 3.884895 TGTTGAGACAAAGAAGCTTCCA 58.115 40.909 22.81 8.91 31.49 3.53
2285 2371 3.795623 TTAGGCCTCTACAATGACGTC 57.204 47.619 9.68 9.11 0.00 4.34
2288 2374 1.403780 GGCCTCTACAATGACGTCGTT 60.404 52.381 17.24 17.24 0.00 3.85
2358 2444 6.992063 ATGCATTTTCTCTAATTCAGACGT 57.008 33.333 0.00 0.00 0.00 4.34
2373 2459 3.374988 TCAGACGTCCGTATATCGTTTGT 59.625 43.478 13.01 0.00 39.48 2.83
2375 2461 4.027945 CAGACGTCCGTATATCGTTTGTTG 60.028 45.833 13.01 0.00 37.92 3.33
2512 2681 3.653164 TGGGTGAGATTGGACTGCTATA 58.347 45.455 0.00 0.00 0.00 1.31
2551 2720 5.464168 CATATGAAGATGGGAAAAATCGGC 58.536 41.667 0.00 0.00 0.00 5.54
2614 2784 5.420739 TGAGTTTTAAAGTTTGGCCAACTCT 59.579 36.000 20.35 16.73 45.77 3.24
2615 2785 5.902681 AGTTTTAAAGTTTGGCCAACTCTC 58.097 37.500 20.35 9.26 45.77 3.20
2619 2789 6.538945 TTAAAGTTTGGCCAACTCTCTTTT 57.461 33.333 26.78 19.18 45.77 2.27
2620 2790 4.391405 AAGTTTGGCCAACTCTCTTTTG 57.609 40.909 20.35 0.00 45.77 2.44
2621 2791 2.101415 AGTTTGGCCAACTCTCTTTTGC 59.899 45.455 20.35 0.00 42.62 3.68
2773 2945 4.679373 ATCAACAATGTCTAGCGAGGAT 57.321 40.909 0.00 0.00 0.00 3.24
2890 3062 2.353406 CGACCCTTTTGAGGTGTATCGT 60.353 50.000 0.00 0.00 37.88 3.73
3106 3278 4.856509 AGGTAAGCCAAAATAGGGAGTTC 58.143 43.478 0.00 0.00 37.19 3.01
3193 3365 7.540055 AGTGGAAGTTAACTTTTCGTATCGTAG 59.460 37.037 21.40 0.00 36.11 3.51
3303 3475 6.151691 TGCAGAAACTCTTTGATATTTGCAC 58.848 36.000 0.00 0.00 33.43 4.57
3305 3477 6.373779 CAGAAACTCTTTGATATTTGCACGT 58.626 36.000 0.00 0.00 0.00 4.49
3455 3627 4.156477 AGACAAGGTTCTAGAACAGCTCT 58.844 43.478 31.30 21.78 42.85 4.09
3481 3653 0.027586 GTGACGAAAAACAGCGTGCT 59.972 50.000 0.00 0.00 41.34 4.40
3780 3956 4.984161 AGCAATCTTGTTTGATCAAAACCG 59.016 37.500 22.07 12.72 46.47 4.44
3781 3957 4.376311 GCAATCTTGTTTGATCAAAACCGC 60.376 41.667 22.07 13.48 46.47 5.68
3784 3960 5.759506 TCTTGTTTGATCAAAACCGCTTA 57.240 34.783 22.07 2.62 46.47 3.09
3816 3992 7.297936 TGGTACACTTTTGACTTCATCTAGA 57.702 36.000 0.00 0.00 0.00 2.43
3992 4174 9.908152 AGTCATTTGATGCAATGTCATAATATG 57.092 29.630 0.00 0.00 0.00 1.78
4050 4232 5.867716 TCTTGGAGCAAGTAAATCTAACGAC 59.132 40.000 0.00 0.00 41.66 4.34
4224 4473 4.916412 GCATGCTTGCTGCTATCG 57.084 55.556 16.80 0.00 45.77 2.92
4271 4529 9.967245 GAAACTGAATAACTGTTTTGGAAAAAC 57.033 29.630 0.00 8.34 45.70 2.43
4356 4614 5.461078 CCAGAAAGCTGTTGTTCAAATTCAG 59.539 40.000 0.00 0.00 40.63 3.02
4370 4628 4.773674 TCAAATTCAGTGCCTCCATGATTT 59.226 37.500 0.00 0.00 0.00 2.17
4399 4657 0.694771 TTCACTGAGCAAGCTCCCAT 59.305 50.000 18.54 2.16 42.09 4.00
4447 4709 4.983628 GCGATGGAGCTGATCGAT 57.016 55.556 22.84 0.00 44.46 3.59
4552 4814 2.264480 CGCACCATCGTCTTCCCA 59.736 61.111 0.00 0.00 0.00 4.37
4742 5004 4.434938 TCGCCGAGTCGACGTTCG 62.435 66.667 20.48 17.53 42.10 3.95
4788 5062 3.751175 CAGATGGGCGTTCACTTTTTCTA 59.249 43.478 0.00 0.00 0.00 2.10
4863 5147 3.435671 GCACCGAATAAACAGTTGTAGCT 59.564 43.478 0.00 0.00 0.00 3.32
4931 5437 7.444792 ACATTTGCTTTTCTGCCATTTCATTAA 59.555 29.630 0.00 0.00 0.00 1.40
4932 5438 7.982761 TTTGCTTTTCTGCCATTTCATTAAT 57.017 28.000 0.00 0.00 0.00 1.40
4934 5440 7.599630 TGCTTTTCTGCCATTTCATTAATTC 57.400 32.000 0.00 0.00 0.00 2.17
4935 5441 6.594937 TGCTTTTCTGCCATTTCATTAATTCC 59.405 34.615 0.00 0.00 0.00 3.01
4936 5442 6.037500 GCTTTTCTGCCATTTCATTAATTCCC 59.962 38.462 0.00 0.00 0.00 3.97
4937 5443 6.617782 TTTCTGCCATTTCATTAATTCCCA 57.382 33.333 0.00 0.00 0.00 4.37
4938 5444 6.617782 TTCTGCCATTTCATTAATTCCCAA 57.382 33.333 0.00 0.00 0.00 4.12
4939 5445 6.617782 TCTGCCATTTCATTAATTCCCAAA 57.382 33.333 0.00 0.00 0.00 3.28
4960 5466 7.936584 CCAAATATATGACGTTTGGGTAATGT 58.063 34.615 5.22 0.00 45.05 2.71
4970 5476 6.285990 ACGTTTGGGTAATGTCATATACTCC 58.714 40.000 0.00 0.00 29.94 3.85
4971 5477 5.699458 CGTTTGGGTAATGTCATATACTCCC 59.301 44.000 0.00 0.00 34.77 4.30
4972 5478 6.463897 CGTTTGGGTAATGTCATATACTCCCT 60.464 42.308 0.00 0.00 35.20 4.20
4973 5479 6.681729 TTGGGTAATGTCATATACTCCCTC 57.318 41.667 0.00 0.00 35.20 4.30
4974 5480 5.091552 TGGGTAATGTCATATACTCCCTCC 58.908 45.833 0.00 0.00 35.20 4.30
4975 5481 4.159879 GGGTAATGTCATATACTCCCTCCG 59.840 50.000 0.00 0.00 0.00 4.63
4978 5484 5.470047 AATGTCATATACTCCCTCCGTTC 57.530 43.478 0.00 0.00 0.00 3.95
4979 5485 3.228453 TGTCATATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
4981 5487 3.640029 GTCATATACTCCCTCCGTTCCAA 59.360 47.826 0.00 0.00 0.00 3.53
4982 5488 4.100498 GTCATATACTCCCTCCGTTCCAAA 59.900 45.833 0.00 0.00 0.00 3.28
4983 5489 4.717778 TCATATACTCCCTCCGTTCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
4984 5490 5.368523 TCATATACTCCCTCCGTTCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
4985 5491 6.555738 TCATATACTCCCTCCGTTCCAAAATA 59.444 38.462 0.00 0.00 0.00 1.40
4986 5492 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
4987 5493 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
4988 5494 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
4989 5495 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
4990 5496 3.073356 TCCCTCCGTTCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
4991 5497 3.439129 CCCTCCGTTCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
4992 5498 4.324267 CCTCCGTTCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
4993 5499 4.392138 CCTCCGTTCCAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
4994 5500 4.963373 TCCGTTCCAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
4995 5501 5.369833 TCCGTTCCAAAATAAGTGTCTCAA 58.630 37.500 0.00 0.00 0.00 3.02
4996 5502 5.237779 TCCGTTCCAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
4997 5503 5.238650 CCGTTCCAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
4998 5504 6.238648 CCGTTCCAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
4999 5505 7.193595 CGTTCCAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
5000 5506 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
5001 5507 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
5002 5508 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
5003 5509 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
5004 5510 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5010 5516 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
5011 5517 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
5012 5518 9.530633 AGTGTCTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
5013 5519 9.310716 GTGTCTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
5054 5560 3.825908 AGGCACTTATTTTGGGAAGGA 57.174 42.857 0.00 0.00 27.25 3.36
5055 5561 3.701664 AGGCACTTATTTTGGGAAGGAG 58.298 45.455 0.00 0.00 27.25 3.69
5056 5562 2.760650 GGCACTTATTTTGGGAAGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
5057 5563 2.760650 GCACTTATTTTGGGAAGGAGGG 59.239 50.000 0.00 0.00 0.00 4.30
5058 5564 3.563479 GCACTTATTTTGGGAAGGAGGGA 60.563 47.826 0.00 0.00 0.00 4.20
5059 5565 4.273318 CACTTATTTTGGGAAGGAGGGAG 58.727 47.826 0.00 0.00 0.00 4.30
5060 5566 3.923425 ACTTATTTTGGGAAGGAGGGAGT 59.077 43.478 0.00 0.00 0.00 3.85
5061 5567 5.045140 CACTTATTTTGGGAAGGAGGGAGTA 60.045 44.000 0.00 0.00 0.00 2.59
5062 5568 5.736616 ACTTATTTTGGGAAGGAGGGAGTAT 59.263 40.000 0.00 0.00 0.00 2.12
5063 5569 6.219772 ACTTATTTTGGGAAGGAGGGAGTATT 59.780 38.462 0.00 0.00 0.00 1.89
5064 5570 5.552430 ATTTTGGGAAGGAGGGAGTATTT 57.448 39.130 0.00 0.00 0.00 1.40
5065 5571 6.668133 ATTTTGGGAAGGAGGGAGTATTTA 57.332 37.500 0.00 0.00 0.00 1.40
5066 5572 5.710409 TTTGGGAAGGAGGGAGTATTTAG 57.290 43.478 0.00 0.00 0.00 1.85
5067 5573 3.665443 TGGGAAGGAGGGAGTATTTAGG 58.335 50.000 0.00 0.00 0.00 2.69
5068 5574 3.276578 TGGGAAGGAGGGAGTATTTAGGA 59.723 47.826 0.00 0.00 0.00 2.94
5069 5575 4.265585 TGGGAAGGAGGGAGTATTTAGGAA 60.266 45.833 0.00 0.00 0.00 3.36
5070 5576 4.102838 GGGAAGGAGGGAGTATTTAGGAAC 59.897 50.000 0.00 0.00 0.00 3.62
5071 5577 4.720273 GGAAGGAGGGAGTATTTAGGAACA 59.280 45.833 0.00 0.00 0.00 3.18
5072 5578 5.163290 GGAAGGAGGGAGTATTTAGGAACAG 60.163 48.000 0.00 0.00 0.00 3.16
5073 5579 5.222278 AGGAGGGAGTATTTAGGAACAGA 57.778 43.478 0.00 0.00 0.00 3.41
5074 5580 5.212745 AGGAGGGAGTATTTAGGAACAGAG 58.787 45.833 0.00 0.00 0.00 3.35
5075 5581 5.043281 AGGAGGGAGTATTTAGGAACAGAGA 60.043 44.000 0.00 0.00 0.00 3.10
5076 5582 5.303333 GGAGGGAGTATTTAGGAACAGAGAG 59.697 48.000 0.00 0.00 0.00 3.20
5077 5583 6.093617 AGGGAGTATTTAGGAACAGAGAGA 57.906 41.667 0.00 0.00 0.00 3.10
5078 5584 6.133356 AGGGAGTATTTAGGAACAGAGAGAG 58.867 44.000 0.00 0.00 0.00 3.20
5079 5585 5.894964 GGGAGTATTTAGGAACAGAGAGAGT 59.105 44.000 0.00 0.00 0.00 3.24
5080 5586 7.061688 GGGAGTATTTAGGAACAGAGAGAGTA 58.938 42.308 0.00 0.00 0.00 2.59
5164 5673 2.706339 AGCAGAATGGAGGTGCTAAG 57.294 50.000 0.00 0.00 45.72 2.18
5166 5675 2.573462 AGCAGAATGGAGGTGCTAAGAA 59.427 45.455 0.00 0.00 45.72 2.52
5170 5680 4.334759 CAGAATGGAGGTGCTAAGAATGTG 59.665 45.833 0.00 0.00 0.00 3.21
5173 5683 2.012673 GGAGGTGCTAAGAATGTGCAG 58.987 52.381 0.00 0.00 37.39 4.41
5177 5687 3.940657 GTGCTAAGAATGTGCAGCTAG 57.059 47.619 0.00 0.00 37.39 3.42
5181 5691 5.006165 GTGCTAAGAATGTGCAGCTAGTAAG 59.994 44.000 0.00 0.00 37.39 2.34
5183 5693 5.988561 GCTAAGAATGTGCAGCTAGTAAGAT 59.011 40.000 0.00 0.00 0.00 2.40
5189 5699 3.932710 TGTGCAGCTAGTAAGATTTTCCG 59.067 43.478 0.00 0.00 0.00 4.30
5190 5700 4.181578 GTGCAGCTAGTAAGATTTTCCGA 58.818 43.478 0.00 0.00 0.00 4.55
5195 5705 6.100004 CAGCTAGTAAGATTTTCCGAAGTGA 58.900 40.000 0.00 0.00 0.00 3.41
5198 5710 7.921745 AGCTAGTAAGATTTTCCGAAGTGATAC 59.078 37.037 0.00 0.00 0.00 2.24
5291 5936 4.356405 TCATCCATGGGCTAGTATGTTG 57.644 45.455 13.02 0.00 0.00 3.33
5309 5954 9.594478 AGTATGTTGAAAAACTTTGTAAAAGGG 57.406 29.630 4.86 0.00 0.00 3.95
5319 5964 8.542497 AAACTTTGTAAAAGGGAAAGAACAAC 57.458 30.769 4.86 0.00 32.18 3.32
5323 5968 4.647399 TGTAAAAGGGAAAGAACAACCAGG 59.353 41.667 0.00 0.00 0.00 4.45
5325 5970 3.398318 AAGGGAAAGAACAACCAGGTT 57.602 42.857 0.00 0.00 0.00 3.50
5326 5971 4.529716 AAGGGAAAGAACAACCAGGTTA 57.470 40.909 3.89 0.00 0.00 2.85
5342 5987 3.180891 GGTTACACCTGGACATCTAGC 57.819 52.381 0.00 0.00 34.73 3.42
5343 5988 2.481449 GGTTACACCTGGACATCTAGCG 60.481 54.545 0.00 0.00 34.73 4.26
5344 5989 0.744874 TACACCTGGACATCTAGCGC 59.255 55.000 0.00 0.00 0.00 5.92
5347 5992 1.264749 ACCTGGACATCTAGCGCCAA 61.265 55.000 2.29 0.00 0.00 4.52
5350 5995 0.323302 TGGACATCTAGCGCCAAACA 59.677 50.000 2.29 0.00 0.00 2.83
5351 5996 1.065491 TGGACATCTAGCGCCAAACAT 60.065 47.619 2.29 0.00 0.00 2.71
5352 5997 1.599542 GGACATCTAGCGCCAAACATC 59.400 52.381 2.29 0.00 0.00 3.06
5353 5998 2.279741 GACATCTAGCGCCAAACATCA 58.720 47.619 2.29 0.00 0.00 3.07
5354 5999 2.677836 GACATCTAGCGCCAAACATCAA 59.322 45.455 2.29 0.00 0.00 2.57
5355 6000 3.081061 ACATCTAGCGCCAAACATCAAA 58.919 40.909 2.29 0.00 0.00 2.69
5356 6001 3.119849 ACATCTAGCGCCAAACATCAAAC 60.120 43.478 2.29 0.00 0.00 2.93
5357 6002 2.499197 TCTAGCGCCAAACATCAAACA 58.501 42.857 2.29 0.00 0.00 2.83
5410 6057 7.876582 AGTACAAACATCAACCTTACTAGAACC 59.123 37.037 0.00 0.00 0.00 3.62
5439 6086 4.552166 CAGTGAATGCCCTAATAAACCG 57.448 45.455 0.00 0.00 0.00 4.44
5441 6088 4.035208 CAGTGAATGCCCTAATAAACCGAC 59.965 45.833 0.00 0.00 0.00 4.79
5442 6089 3.942748 GTGAATGCCCTAATAAACCGACA 59.057 43.478 0.00 0.00 0.00 4.35
5445 6092 5.298276 TGAATGCCCTAATAAACCGACATTC 59.702 40.000 0.00 0.00 41.43 2.67
5453 6100 2.024176 AAACCGACATTCATCTCCGG 57.976 50.000 0.00 0.00 45.09 5.14
5480 6129 2.561419 CCTGTACCGTTCTTCCTCTTCA 59.439 50.000 0.00 0.00 0.00 3.02
5484 6133 3.601443 ACCGTTCTTCCTCTTCATCAG 57.399 47.619 0.00 0.00 0.00 2.90
5485 6134 3.165875 ACCGTTCTTCCTCTTCATCAGA 58.834 45.455 0.00 0.00 0.00 3.27
5516 6165 1.568504 AACGGCCACCAGAATCTCTA 58.431 50.000 2.24 0.00 0.00 2.43
5546 6195 0.901124 ACCGCTTGCTCTCTGATCTT 59.099 50.000 0.00 0.00 0.00 2.40
5553 6202 5.659463 GCTTGCTCTCTGATCTTTCTTCTA 58.341 41.667 0.00 0.00 0.00 2.10
5579 6327 0.395724 TGTCATCGCCTCTCTGCCTA 60.396 55.000 0.00 0.00 0.00 3.93
5609 6357 3.312890 TGATCTCTCAGGGGATTTCTCC 58.687 50.000 0.00 0.00 41.26 3.71
5617 6365 4.542075 GGATTTCTCCCGCCTGTC 57.458 61.111 0.00 0.00 35.28 3.51
5631 6379 1.710816 CCTGTCCCTGTCCCTATCTC 58.289 60.000 0.00 0.00 0.00 2.75
5666 6414 3.190383 TCTTCTCTTCCCCTGTCATCA 57.810 47.619 0.00 0.00 0.00 3.07
5669 6417 0.543749 CTCTTCCCCTGTCATCACCC 59.456 60.000 0.00 0.00 0.00 4.61
5726 6474 0.946221 CGTGCCTGTTCCTGTCACTC 60.946 60.000 0.00 0.00 0.00 3.51
5750 6498 4.937620 TCTTTTGTGTCTCTATCACCATGC 59.062 41.667 0.00 0.00 35.25 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 9.305925 GCAAAGAAGAGAAGAAAAATTTTCTGA 57.694 29.630 20.18 0.00 33.97 3.27
107 108 2.200370 AGGACCGTGGTCACTCCA 59.800 61.111 20.02 0.00 46.20 3.86
112 113 1.444250 GTGTTCAGGACCGTGGTCA 59.556 57.895 20.02 0.00 46.20 4.02
141 143 3.438087 CCTTTCACCACAGTGCATCTAAG 59.562 47.826 0.00 0.00 44.16 2.18
145 147 1.267806 CACCTTTCACCACAGTGCATC 59.732 52.381 0.00 0.00 44.16 3.91
159 161 4.248691 GTACTCTGGTACGAACACCTTT 57.751 45.455 0.00 0.00 38.85 3.11
170 172 3.053619 TGCCTCTCTCATGTACTCTGGTA 60.054 47.826 0.00 0.00 0.00 3.25
181 183 2.971330 CCTCCATAGTTGCCTCTCTCAT 59.029 50.000 0.00 0.00 0.00 2.90
190 192 4.846779 TTTTTGTGTCCTCCATAGTTGC 57.153 40.909 0.00 0.00 0.00 4.17
239 241 7.691993 ACTGAACCTAGTATACATGGGAATT 57.308 36.000 15.54 4.46 0.00 2.17
247 249 6.941857 TGCAATCAACTGAACCTAGTATACA 58.058 36.000 5.50 0.00 0.00 2.29
252 254 3.441572 GCATGCAATCAACTGAACCTAGT 59.558 43.478 14.21 0.00 0.00 2.57
313 315 5.407387 GCTTCTTTGACGTGACTTGGTATTA 59.593 40.000 0.00 0.00 0.00 0.98
393 408 9.797556 CAAAGTTTGATCACATTGATGTCATAT 57.202 29.630 10.19 0.00 37.20 1.78
409 446 5.009410 CAGAGCCTCTTGAACAAAGTTTGAT 59.991 40.000 22.23 10.54 37.18 2.57
412 449 3.067320 GCAGAGCCTCTTGAACAAAGTTT 59.933 43.478 0.00 0.00 37.18 2.66
428 472 3.435186 GCTTCCCCGTTGCAGAGC 61.435 66.667 0.00 0.00 0.00 4.09
434 478 2.359975 GGTGGAGCTTCCCCGTTG 60.360 66.667 0.00 0.00 35.03 4.10
435 479 4.016706 CGGTGGAGCTTCCCCGTT 62.017 66.667 7.91 0.00 41.98 4.44
438 482 1.833787 TTGTACGGTGGAGCTTCCCC 61.834 60.000 0.00 0.00 35.03 4.81
454 499 4.038282 TGTGTCTGTTGACGGTATAGTTGT 59.962 41.667 0.00 0.00 45.70 3.32
521 566 2.731587 CTTCACAAAACGCCGCCCTG 62.732 60.000 0.00 0.00 0.00 4.45
522 567 2.517402 TTCACAAAACGCCGCCCT 60.517 55.556 0.00 0.00 0.00 5.19
531 576 6.122277 GGGATCAGATATGGACTTCACAAAA 58.878 40.000 0.00 0.00 0.00 2.44
541 586 1.988107 GCCTTGGGGATCAGATATGGA 59.012 52.381 0.00 0.00 33.58 3.41
585 631 1.890979 CCTAGCCGCCTCTTGCATG 60.891 63.158 0.00 0.00 41.33 4.06
653 708 1.875813 GTCATCGCAGCTCCACGAG 60.876 63.158 8.73 2.64 42.31 4.18
671 727 0.393077 AAGTGTCTCTGGTTCCCACG 59.607 55.000 0.00 0.00 0.00 4.94
742 799 3.402110 TCGCTCCAAACATAGCCATATG 58.598 45.455 0.00 0.00 43.81 1.78
743 800 3.668447 CTCGCTCCAAACATAGCCATAT 58.332 45.455 0.00 0.00 0.00 1.78
744 801 2.806745 GCTCGCTCCAAACATAGCCATA 60.807 50.000 0.00 0.00 0.00 2.74
745 802 1.959042 CTCGCTCCAAACATAGCCAT 58.041 50.000 0.00 0.00 0.00 4.40
746 803 0.744414 GCTCGCTCCAAACATAGCCA 60.744 55.000 0.00 0.00 0.00 4.75
747 804 0.462759 AGCTCGCTCCAAACATAGCC 60.463 55.000 0.00 0.00 0.00 3.93
748 805 1.373570 AAGCTCGCTCCAAACATAGC 58.626 50.000 0.00 0.00 0.00 2.97
749 806 6.646653 TGATATAAAGCTCGCTCCAAACATAG 59.353 38.462 0.00 0.00 0.00 2.23
750 807 6.521162 TGATATAAAGCTCGCTCCAAACATA 58.479 36.000 0.00 0.00 0.00 2.29
751 808 5.368145 TGATATAAAGCTCGCTCCAAACAT 58.632 37.500 0.00 0.00 0.00 2.71
752 809 4.765273 TGATATAAAGCTCGCTCCAAACA 58.235 39.130 0.00 0.00 0.00 2.83
753 810 5.106908 GGATGATATAAAGCTCGCTCCAAAC 60.107 44.000 0.00 0.00 0.00 2.93
754 811 4.997395 GGATGATATAAAGCTCGCTCCAAA 59.003 41.667 0.00 0.00 0.00 3.28
755 812 4.040339 TGGATGATATAAAGCTCGCTCCAA 59.960 41.667 0.00 0.00 0.00 3.53
756 813 3.578282 TGGATGATATAAAGCTCGCTCCA 59.422 43.478 0.00 0.00 0.00 3.86
757 814 4.193826 TGGATGATATAAAGCTCGCTCC 57.806 45.455 0.00 0.00 0.00 4.70
758 815 6.734104 AAATGGATGATATAAAGCTCGCTC 57.266 37.500 0.00 0.00 0.00 5.03
759 816 8.043113 TGATAAATGGATGATATAAAGCTCGCT 58.957 33.333 0.00 0.00 0.00 4.93
760 817 8.201554 TGATAAATGGATGATATAAAGCTCGC 57.798 34.615 0.00 0.00 0.00 5.03
761 818 9.376075 ACTGATAAATGGATGATATAAAGCTCG 57.624 33.333 0.00 0.00 0.00 5.03
772 829 9.919416 TGGATTAGAAAACTGATAAATGGATGA 57.081 29.630 0.00 0.00 0.00 2.92
806 863 9.023962 GGGGATTTGATTTATGCTATGTATTGA 57.976 33.333 0.00 0.00 0.00 2.57
807 864 8.805175 TGGGGATTTGATTTATGCTATGTATTG 58.195 33.333 0.00 0.00 0.00 1.90
808 865 8.954834 TGGGGATTTGATTTATGCTATGTATT 57.045 30.769 0.00 0.00 0.00 1.89
809 866 9.551339 AATGGGGATTTGATTTATGCTATGTAT 57.449 29.630 0.00 0.00 0.00 2.29
810 867 8.805175 CAATGGGGATTTGATTTATGCTATGTA 58.195 33.333 0.00 0.00 0.00 2.29
811 868 7.290714 ACAATGGGGATTTGATTTATGCTATGT 59.709 33.333 0.00 0.00 0.00 2.29
812 869 7.673180 ACAATGGGGATTTGATTTATGCTATG 58.327 34.615 0.00 0.00 0.00 2.23
813 870 7.860649 ACAATGGGGATTTGATTTATGCTAT 57.139 32.000 0.00 0.00 0.00 2.97
814 871 7.673641 AACAATGGGGATTTGATTTATGCTA 57.326 32.000 0.00 0.00 0.00 3.49
815 872 6.564557 AACAATGGGGATTTGATTTATGCT 57.435 33.333 0.00 0.00 0.00 3.79
816 873 7.336427 TCAAAACAATGGGGATTTGATTTATGC 59.664 33.333 0.00 0.00 36.99 3.14
817 874 8.789825 TCAAAACAATGGGGATTTGATTTATG 57.210 30.769 0.00 0.00 36.99 1.90
825 882 8.578151 CAAATCAAATCAAAACAATGGGGATTT 58.422 29.630 0.00 0.00 38.36 2.17
826 883 7.724951 ACAAATCAAATCAAAACAATGGGGATT 59.275 29.630 0.00 0.00 0.00 3.01
827 884 7.175293 CACAAATCAAATCAAAACAATGGGGAT 59.825 33.333 0.00 0.00 0.00 3.85
828 885 6.485984 CACAAATCAAATCAAAACAATGGGGA 59.514 34.615 0.00 0.00 0.00 4.81
829 886 6.670233 CACAAATCAAATCAAAACAATGGGG 58.330 36.000 0.00 0.00 0.00 4.96
830 887 6.144175 GCACAAATCAAATCAAAACAATGGG 58.856 36.000 0.00 0.00 0.00 4.00
831 888 6.726230 TGCACAAATCAAATCAAAACAATGG 58.274 32.000 0.00 0.00 0.00 3.16
832 889 7.411274 ACTGCACAAATCAAATCAAAACAATG 58.589 30.769 0.00 0.00 0.00 2.82
837 894 6.339730 ACTGACTGCACAAATCAAATCAAAA 58.660 32.000 0.00 0.00 0.00 2.44
841 898 4.479619 GGACTGACTGCACAAATCAAATC 58.520 43.478 0.00 0.00 0.00 2.17
846 903 1.168714 GGGGACTGACTGCACAAATC 58.831 55.000 0.00 0.00 0.00 2.17
847 904 0.478072 TGGGGACTGACTGCACAAAT 59.522 50.000 0.00 0.00 0.00 2.32
850 907 0.837691 AGATGGGGACTGACTGCACA 60.838 55.000 0.00 0.00 0.00 4.57
873 930 1.961394 TCTCCGATATGTAGGCCACAC 59.039 52.381 5.01 2.39 40.86 3.82
876 933 2.158519 TCTGTCTCCGATATGTAGGCCA 60.159 50.000 5.01 0.00 0.00 5.36
990 1048 1.656818 CCGCCGCCATCTGATTTGTT 61.657 55.000 0.00 0.00 0.00 2.83
991 1049 2.114670 CCGCCGCCATCTGATTTGT 61.115 57.895 0.00 0.00 0.00 2.83
1330 1402 1.340658 CACATTCAGTCAGTCGGTCG 58.659 55.000 0.00 0.00 0.00 4.79
1334 1406 0.667487 ACGCCACATTCAGTCAGTCG 60.667 55.000 0.00 0.00 0.00 4.18
1341 1413 0.662619 ACACACAACGCCACATTCAG 59.337 50.000 0.00 0.00 0.00 3.02
1344 1416 1.646540 CGACACACAACGCCACATT 59.353 52.632 0.00 0.00 0.00 2.71
1345 1417 3.329231 CGACACACAACGCCACAT 58.671 55.556 0.00 0.00 0.00 3.21
1581 1659 1.827789 GTGAGGCTGTGTGGGCAAA 60.828 57.895 0.00 0.00 0.00 3.68
1584 1662 3.612247 ATCGTGAGGCTGTGTGGGC 62.612 63.158 0.00 0.00 0.00 5.36
1589 1667 1.394917 GCAGTTAATCGTGAGGCTGTG 59.605 52.381 0.00 0.00 0.00 3.66
1604 1682 6.428159 GGATACGAATGGATAATGAAGCAGTT 59.572 38.462 0.00 0.00 0.00 3.16
1605 1683 5.934625 GGATACGAATGGATAATGAAGCAGT 59.065 40.000 0.00 0.00 0.00 4.40
1639 1719 7.006831 CGACAGATTCAAACGATTCTGATTTTG 59.993 37.037 16.92 0.00 40.78 2.44
1652 1732 0.452784 GGCACGCGACAGATTCAAAC 60.453 55.000 15.93 0.00 0.00 2.93
1707 1787 2.294078 GCTGTACCTCCCCTGCAGT 61.294 63.158 13.81 0.00 0.00 4.40
1937 2022 7.880713 TCACAACATTTGTAGAGCATTAAGGTA 59.119 33.333 0.00 0.00 43.23 3.08
1958 2043 1.954733 GCATGCCCCACTACATCACAA 60.955 52.381 6.36 0.00 0.00 3.33
2032 2118 2.671963 GGACCCGTTCAGCCCAAC 60.672 66.667 0.00 0.00 0.00 3.77
2038 2124 0.036164 TCCACAATGGACCCGTTCAG 59.964 55.000 0.00 0.00 42.67 3.02
2068 2154 7.446931 GGATGAAGATCACACTCTCTGTAGATA 59.553 40.741 0.00 0.00 0.00 1.98
2104 2190 8.062065 TCTTCACAAAAGAAACATAACCAACT 57.938 30.769 0.00 0.00 0.00 3.16
2106 2192 9.311916 CATTCTTCACAAAAGAAACATAACCAA 57.688 29.630 4.49 0.00 39.43 3.67
2219 2305 1.559682 TCCTCTGGCGCCTTAGAAAAT 59.440 47.619 29.70 0.00 0.00 1.82
2285 2371 6.291743 CCTTTTCAACATGATCAAACACAACG 60.292 38.462 0.00 0.00 0.00 4.10
2288 2374 6.219417 ACCTTTTCAACATGATCAAACACA 57.781 33.333 0.00 0.00 0.00 3.72
2333 2419 7.910304 ACGTCTGAATTAGAGAAAATGCATAC 58.090 34.615 0.00 0.00 35.70 2.39
2358 2444 7.929159 TGTATAGACAACAAACGATATACGGA 58.071 34.615 0.00 0.00 38.38 4.69
2512 2681 8.515695 TCTTCATATGCTTCATCAATTGAGTT 57.484 30.769 14.54 0.00 35.27 3.01
2551 2720 5.803967 GCAATCTTGATAACAAAGCTTCCAG 59.196 40.000 0.00 0.00 35.49 3.86
2614 2784 7.895759 AGAATAAAACTAAGGCATGCAAAAGA 58.104 30.769 21.36 0.00 0.00 2.52
2615 2785 8.538409 AAGAATAAAACTAAGGCATGCAAAAG 57.462 30.769 21.36 14.73 0.00 2.27
2619 2789 8.574251 TTAGAAGAATAAAACTAAGGCATGCA 57.426 30.769 21.36 0.00 0.00 3.96
2773 2945 4.201910 GCTTGCACAACAGACTTCTTGTAA 60.202 41.667 0.00 0.00 0.00 2.41
2890 3062 3.016031 AGGATTGACAATACGCAATGCA 58.984 40.909 5.91 0.00 42.85 3.96
3106 3278 8.078596 GCCCATAACTAAAGATGCAAAAGATAG 58.921 37.037 0.00 0.00 0.00 2.08
3193 3365 7.553881 TCTTGTAAAGCAAATAGATAGCACC 57.446 36.000 0.00 0.00 45.70 5.01
3234 3406 6.203915 AGCACACGACAACAAAATGATAACTA 59.796 34.615 0.00 0.00 0.00 2.24
3235 3407 5.008613 AGCACACGACAACAAAATGATAACT 59.991 36.000 0.00 0.00 0.00 2.24
3252 3424 9.988350 ATAACTTTCTTGAATTATTAGCACACG 57.012 29.630 0.00 0.00 0.00 4.49
3284 3456 5.240623 TGGACGTGCAAATATCAAAGAGTTT 59.759 36.000 7.52 0.00 0.00 2.66
3303 3475 6.202954 ACAACTTTTCTAGAAGATTGTGGACG 59.797 38.462 21.13 2.98 33.63 4.79
3305 3477 7.878127 CCTACAACTTTTCTAGAAGATTGTGGA 59.122 37.037 26.18 15.36 34.77 4.02
3455 3627 3.726486 CGCTGTTTTTCGTCACTCAACAA 60.726 43.478 0.00 0.00 0.00 2.83
3481 3653 6.239217 AGATCTACCAACATAATGTGCTCA 57.761 37.500 0.00 0.00 0.00 4.26
3780 3956 4.830826 AAGTGTACCAAAACAGCTAAGC 57.169 40.909 0.00 0.00 0.00 3.09
3781 3957 6.691388 GTCAAAAGTGTACCAAAACAGCTAAG 59.309 38.462 0.00 0.00 0.00 2.18
3784 3960 4.705023 AGTCAAAAGTGTACCAAAACAGCT 59.295 37.500 0.00 0.00 0.00 4.24
3855 4031 3.568430 CCACCTTTACTGTTCCTGGTTTC 59.432 47.826 0.00 0.00 0.00 2.78
3906 4082 2.610833 CGAGCTAATGTGCATGACATGT 59.389 45.455 16.62 0.00 45.12 3.21
4013 4195 7.652727 ACTTGCTCCAAGAAAATAGAGAAAAC 58.347 34.615 11.56 0.00 43.42 2.43
4050 4232 6.425721 ACAATTTCAGCAAAAACAGATGGATG 59.574 34.615 0.00 0.00 0.00 3.51
4324 4582 4.210331 ACAACAGCTTTCTGGAACTCAAT 58.790 39.130 0.00 0.00 44.54 2.57
4325 4583 3.620488 ACAACAGCTTTCTGGAACTCAA 58.380 40.909 0.00 0.00 44.54 3.02
4326 4584 3.281727 ACAACAGCTTTCTGGAACTCA 57.718 42.857 0.00 0.00 44.54 3.41
4356 4614 2.689983 CAGGGTTAAATCATGGAGGCAC 59.310 50.000 0.00 0.00 0.00 5.01
4370 4628 4.326826 CTTGCTCAGTGAATTCAGGGTTA 58.673 43.478 8.80 0.00 0.00 2.85
4399 4657 4.041567 TGGTGAGTTTCAGAAGGAAGCATA 59.958 41.667 0.00 0.00 39.01 3.14
4447 4709 1.469767 CGCATCGTCACTTCCATCTCA 60.470 52.381 0.00 0.00 0.00 3.27
4552 4814 3.697747 TCGAACCGGGATGCCGTT 61.698 61.111 24.84 17.70 0.00 4.44
4648 4910 2.260434 GGCTTACTGTCGGCGACA 59.740 61.111 36.84 36.84 40.50 4.35
4742 5004 0.454600 TATGCGTCGGAGAAGTCCAC 59.545 55.000 0.00 0.00 44.18 4.02
4788 5062 6.073003 CGAAGGTTTCTGCTAGACTTCAAAAT 60.073 38.462 0.00 0.00 35.33 1.82
4936 5442 8.616942 TGACATTACCCAAACGTCATATATTTG 58.383 33.333 0.00 0.00 31.92 2.32
4937 5443 8.740123 TGACATTACCCAAACGTCATATATTT 57.260 30.769 0.00 0.00 31.92 1.40
4938 5444 8.918202 ATGACATTACCCAAACGTCATATATT 57.082 30.769 0.00 0.00 43.58 1.28
4947 5453 5.699458 GGGAGTATATGACATTACCCAAACG 59.301 44.000 0.00 0.00 36.47 3.60
4948 5454 6.838382 AGGGAGTATATGACATTACCCAAAC 58.162 40.000 0.00 0.00 38.62 2.93
4951 5457 5.091552 GGAGGGAGTATATGACATTACCCA 58.908 45.833 0.00 0.00 38.62 4.51
4952 5458 4.159879 CGGAGGGAGTATATGACATTACCC 59.840 50.000 0.00 0.00 36.67 3.69
4953 5459 4.771054 ACGGAGGGAGTATATGACATTACC 59.229 45.833 0.00 0.00 0.00 2.85
4954 5460 5.979288 ACGGAGGGAGTATATGACATTAC 57.021 43.478 0.00 0.00 0.00 1.89
4956 5462 4.283722 GGAACGGAGGGAGTATATGACATT 59.716 45.833 0.00 0.00 0.00 2.71
4958 5464 3.228453 GGAACGGAGGGAGTATATGACA 58.772 50.000 0.00 0.00 0.00 3.58
4959 5465 3.228453 TGGAACGGAGGGAGTATATGAC 58.772 50.000 0.00 0.00 0.00 3.06
4960 5466 3.605726 TGGAACGGAGGGAGTATATGA 57.394 47.619 0.00 0.00 0.00 2.15
4962 5468 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
4964 5470 5.191124 ACTTATTTTGGAACGGAGGGAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
4966 5472 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
4968 5474 3.073356 ACACTTATTTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
4969 5475 3.418047 ACACTTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
4970 5476 4.324267 AGACACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
4971 5477 4.994852 TGAGACACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
4972 5478 4.963373 TGAGACACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
4973 5479 5.238650 AGTTGAGACACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
4974 5480 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
4975 5481 7.973944 ACAAAGTTGAGACACTTATTTTGGAAC 59.026 33.333 0.00 0.00 35.87 3.62
4978 5484 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
4984 5490 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4985 5491 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
4986 5492 9.530633 CTAAAGTTAGTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 0.00 3.55
4987 5493 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
5022 5528 9.185680 CCAAAATAAGTGCCTTAACCTTAGTAT 57.814 33.333 0.00 0.00 29.35 2.12
5023 5529 7.612633 CCCAAAATAAGTGCCTTAACCTTAGTA 59.387 37.037 0.00 0.00 29.35 1.82
5024 5530 6.436218 CCCAAAATAAGTGCCTTAACCTTAGT 59.564 38.462 0.00 0.00 29.35 2.24
5025 5531 6.661805 TCCCAAAATAAGTGCCTTAACCTTAG 59.338 38.462 0.00 0.00 29.35 2.18
5026 5532 6.553857 TCCCAAAATAAGTGCCTTAACCTTA 58.446 36.000 0.00 0.00 29.35 2.69
5027 5533 5.399113 TCCCAAAATAAGTGCCTTAACCTT 58.601 37.500 0.00 0.00 29.35 3.50
5028 5534 5.005628 TCCCAAAATAAGTGCCTTAACCT 57.994 39.130 0.00 0.00 29.35 3.50
5029 5535 5.337250 CCTTCCCAAAATAAGTGCCTTAACC 60.337 44.000 0.00 0.00 29.35 2.85
5030 5536 5.479027 TCCTTCCCAAAATAAGTGCCTTAAC 59.521 40.000 0.00 0.00 29.35 2.01
5031 5537 5.646215 TCCTTCCCAAAATAAGTGCCTTAA 58.354 37.500 0.00 0.00 29.35 1.85
5032 5538 5.261216 CTCCTTCCCAAAATAAGTGCCTTA 58.739 41.667 0.00 0.00 0.00 2.69
5033 5539 4.089361 CTCCTTCCCAAAATAAGTGCCTT 58.911 43.478 0.00 0.00 0.00 4.35
5034 5540 3.564352 CCTCCTTCCCAAAATAAGTGCCT 60.564 47.826 0.00 0.00 0.00 4.75
5035 5541 2.760650 CCTCCTTCCCAAAATAAGTGCC 59.239 50.000 0.00 0.00 0.00 5.01
5036 5542 2.760650 CCCTCCTTCCCAAAATAAGTGC 59.239 50.000 0.00 0.00 0.00 4.40
5037 5543 4.263949 ACTCCCTCCTTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
5038 5544 3.923425 ACTCCCTCCTTCCCAAAATAAGT 59.077 43.478 0.00 0.00 0.00 2.24
5039 5545 4.592997 ACTCCCTCCTTCCCAAAATAAG 57.407 45.455 0.00 0.00 0.00 1.73
5040 5546 6.668133 AATACTCCCTCCTTCCCAAAATAA 57.332 37.500 0.00 0.00 0.00 1.40
5041 5547 6.668133 AAATACTCCCTCCTTCCCAAAATA 57.332 37.500 0.00 0.00 0.00 1.40
5042 5548 5.552430 AAATACTCCCTCCTTCCCAAAAT 57.448 39.130 0.00 0.00 0.00 1.82
5043 5549 5.044402 CCTAAATACTCCCTCCTTCCCAAAA 60.044 44.000 0.00 0.00 0.00 2.44
5044 5550 4.477213 CCTAAATACTCCCTCCTTCCCAAA 59.523 45.833 0.00 0.00 0.00 3.28
5045 5551 4.045022 CCTAAATACTCCCTCCTTCCCAA 58.955 47.826 0.00 0.00 0.00 4.12
5046 5552 3.276578 TCCTAAATACTCCCTCCTTCCCA 59.723 47.826 0.00 0.00 0.00 4.37
5047 5553 3.937751 TCCTAAATACTCCCTCCTTCCC 58.062 50.000 0.00 0.00 0.00 3.97
5048 5554 4.720273 TGTTCCTAAATACTCCCTCCTTCC 59.280 45.833 0.00 0.00 0.00 3.46
5049 5555 5.661759 TCTGTTCCTAAATACTCCCTCCTTC 59.338 44.000 0.00 0.00 0.00 3.46
5050 5556 5.600749 TCTGTTCCTAAATACTCCCTCCTT 58.399 41.667 0.00 0.00 0.00 3.36
5051 5557 5.043281 TCTCTGTTCCTAAATACTCCCTCCT 60.043 44.000 0.00 0.00 0.00 3.69
5052 5558 5.209659 TCTCTGTTCCTAAATACTCCCTCC 58.790 45.833 0.00 0.00 0.00 4.30
5053 5559 6.130569 TCTCTCTGTTCCTAAATACTCCCTC 58.869 44.000 0.00 0.00 0.00 4.30
5054 5560 6.093617 TCTCTCTGTTCCTAAATACTCCCT 57.906 41.667 0.00 0.00 0.00 4.20
5055 5561 5.894964 ACTCTCTCTGTTCCTAAATACTCCC 59.105 44.000 0.00 0.00 0.00 4.30
5056 5562 8.700439 ATACTCTCTCTGTTCCTAAATACTCC 57.300 38.462 0.00 0.00 0.00 3.85
5143 5652 3.969976 TCTTAGCACCTCCATTCTGCTAT 59.030 43.478 0.00 0.00 41.86 2.97
5144 5653 3.374764 TCTTAGCACCTCCATTCTGCTA 58.625 45.455 0.00 0.00 41.52 3.49
5145 5654 2.191400 TCTTAGCACCTCCATTCTGCT 58.809 47.619 0.00 0.00 43.67 4.24
5146 5655 2.698855 TCTTAGCACCTCCATTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
5150 5659 3.019564 GCACATTCTTAGCACCTCCATT 58.980 45.455 0.00 0.00 0.00 3.16
5164 5673 6.490534 GGAAAATCTTACTAGCTGCACATTC 58.509 40.000 1.02 0.00 0.00 2.67
5166 5675 4.572389 CGGAAAATCTTACTAGCTGCACAT 59.428 41.667 1.02 0.00 0.00 3.21
5170 5680 4.870991 ACTTCGGAAAATCTTACTAGCTGC 59.129 41.667 0.00 0.00 0.00 5.25
5173 5683 7.705325 TGTATCACTTCGGAAAATCTTACTAGC 59.295 37.037 0.00 0.00 0.00 3.42
5176 5686 9.449719 AATTGTATCACTTCGGAAAATCTTACT 57.550 29.630 0.00 0.00 0.00 2.24
5177 5687 9.704098 GAATTGTATCACTTCGGAAAATCTTAC 57.296 33.333 0.00 0.00 0.00 2.34
5181 5691 7.954906 GTGAATTGTATCACTTCGGAAAATC 57.045 36.000 0.38 0.00 44.98 2.17
5291 5936 9.210329 TGTTCTTTCCCTTTTACAAAGTTTTTC 57.790 29.630 0.00 0.00 0.00 2.29
5306 5951 3.203487 TGTAACCTGGTTGTTCTTTCCCT 59.797 43.478 22.04 0.00 0.00 4.20
5323 5968 2.810650 CGCTAGATGTCCAGGTGTAAC 58.189 52.381 0.00 0.00 0.00 2.50
5325 5970 0.744874 GCGCTAGATGTCCAGGTGTA 59.255 55.000 0.00 0.00 0.00 2.90
5326 5971 1.517832 GCGCTAGATGTCCAGGTGT 59.482 57.895 0.00 0.00 0.00 4.16
5331 5976 0.323302 TGTTTGGCGCTAGATGTCCA 59.677 50.000 7.64 0.00 0.00 4.02
5335 5980 3.119884 TGTTTGATGTTTGGCGCTAGATG 60.120 43.478 7.64 0.00 0.00 2.90
5336 5981 3.081061 TGTTTGATGTTTGGCGCTAGAT 58.919 40.909 7.64 0.00 0.00 1.98
5337 5982 2.499197 TGTTTGATGTTTGGCGCTAGA 58.501 42.857 7.64 0.00 0.00 2.43
5338 5983 2.979813 GTTGTTTGATGTTTGGCGCTAG 59.020 45.455 7.64 0.00 0.00 3.42
5339 5984 2.621055 AGTTGTTTGATGTTTGGCGCTA 59.379 40.909 7.64 0.00 0.00 4.26
5340 5985 1.408702 AGTTGTTTGATGTTTGGCGCT 59.591 42.857 7.64 0.00 0.00 5.92
5341 5986 1.851658 AGTTGTTTGATGTTTGGCGC 58.148 45.000 0.00 0.00 0.00 6.53
5342 5987 4.355437 TGTTAGTTGTTTGATGTTTGGCG 58.645 39.130 0.00 0.00 0.00 5.69
5343 5988 6.654793 TTTGTTAGTTGTTTGATGTTTGGC 57.345 33.333 0.00 0.00 0.00 4.52
5344 5989 9.488124 CAATTTTGTTAGTTGTTTGATGTTTGG 57.512 29.630 0.00 0.00 0.00 3.28
5410 6057 2.502510 GCATTCACTGCCGTTGCG 60.503 61.111 0.00 0.00 45.66 4.85
5423 6070 5.197451 TGAATGTCGGTTTATTAGGGCATT 58.803 37.500 0.00 0.00 0.00 3.56
5431 6078 4.127171 CCGGAGATGAATGTCGGTTTATT 58.873 43.478 0.00 0.00 36.38 1.40
5433 6080 2.159014 CCCGGAGATGAATGTCGGTTTA 60.159 50.000 0.73 0.00 39.13 2.01
5436 6083 0.686441 TCCCGGAGATGAATGTCGGT 60.686 55.000 0.73 0.00 39.13 4.69
5439 6086 3.142174 GGAAATCCCGGAGATGAATGTC 58.858 50.000 0.73 0.00 34.56 3.06
5441 6088 3.144506 CAGGAAATCCCGGAGATGAATG 58.855 50.000 0.73 0.00 40.87 2.67
5442 6089 2.780010 ACAGGAAATCCCGGAGATGAAT 59.220 45.455 0.73 0.00 40.87 2.57
5445 6092 2.224305 GGTACAGGAAATCCCGGAGATG 60.224 54.545 0.73 0.00 40.87 2.90
5453 6100 3.055312 AGGAAGAACGGTACAGGAAATCC 60.055 47.826 0.00 0.60 0.00 3.01
5480 6129 3.846360 CCGTTACGAAAGAAGGTCTGAT 58.154 45.455 6.24 0.00 0.00 2.90
5484 6133 1.073964 GGCCGTTACGAAAGAAGGTC 58.926 55.000 6.24 0.00 0.00 3.85
5485 6134 0.393820 TGGCCGTTACGAAAGAAGGT 59.606 50.000 6.24 0.00 0.00 3.50
5516 6165 1.141881 CAAGCGGTCTAGGCACGAT 59.858 57.895 9.05 0.16 0.00 3.73
5546 6195 3.181465 GCGATGACAGGGGAATAGAAGAA 60.181 47.826 0.00 0.00 0.00 2.52
5553 6202 0.692419 AGAGGCGATGACAGGGGAAT 60.692 55.000 0.00 0.00 0.00 3.01
5579 6327 1.962807 CCTGAGAGATCAAGAGGCGAT 59.037 52.381 0.00 0.00 0.00 4.58
5609 6357 3.976490 TAGGGACAGGGACAGGCGG 62.976 68.421 0.00 0.00 0.00 6.13
5610 6358 1.749334 GATAGGGACAGGGACAGGCG 61.749 65.000 0.00 0.00 0.00 5.52
5617 6365 2.432510 GACACAAGAGATAGGGACAGGG 59.567 54.545 0.00 0.00 0.00 4.45
5631 6379 6.368516 GGAAGAGAAGAAAGATCAGACACAAG 59.631 42.308 0.00 0.00 0.00 3.16
5669 6417 2.654079 AAGAGGCGACAGGCAGAGG 61.654 63.158 0.00 0.00 46.16 3.69
5726 6474 5.064452 GCATGGTGATAGAGACACAAAAGAG 59.936 44.000 0.00 0.00 39.65 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.