Multiple sequence alignment - TraesCS5D01G503700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G503700 chr5D 100.000 5439 0 0 1 5439 530423650 530429088 0.000000e+00 10045.0
1 TraesCS5D01G503700 chr5D 81.301 123 20 2 2132 2252 463686126 463686247 4.480000e-16 97.1
2 TraesCS5D01G503700 chr5A 96.413 1812 47 7 2020 3819 658671227 658673032 0.000000e+00 2970.0
3 TraesCS5D01G503700 chr5A 92.131 1042 51 9 832 1852 658670198 658671229 0.000000e+00 1441.0
4 TraesCS5D01G503700 chr5A 89.796 637 55 6 4810 5439 658673821 658674454 0.000000e+00 808.0
5 TraesCS5D01G503700 chr5A 87.969 640 56 10 3866 4499 658673028 658673652 0.000000e+00 736.0
6 TraesCS5D01G503700 chr5B 87.657 1669 131 34 2744 4381 669671607 669673231 0.000000e+00 1871.0
7 TraesCS5D01G503700 chr5B 90.742 1199 80 14 832 2016 669670004 669671185 0.000000e+00 1570.0
8 TraesCS5D01G503700 chr5B 92.921 777 42 7 1 774 669662905 669663671 0.000000e+00 1118.0
9 TraesCS5D01G503700 chr5B 93.475 613 30 4 4833 5439 669673844 669674452 0.000000e+00 902.0
10 TraesCS5D01G503700 chr5B 83.962 424 56 10 2256 2676 669671193 669671607 3.950000e-106 396.0
11 TraesCS5D01G503700 chr5B 92.500 120 9 0 4661 4780 418373542 418373423 7.240000e-39 172.0
12 TraesCS5D01G503700 chr2B 89.217 1456 113 21 2770 4205 141563072 141564503 0.000000e+00 1779.0
13 TraesCS5D01G503700 chr2B 90.649 1155 72 16 865 2005 141559099 141560231 0.000000e+00 1502.0
14 TraesCS5D01G503700 chr2B 81.395 645 81 24 4005 4639 141564402 141565017 1.760000e-134 490.0
15 TraesCS5D01G503700 chr2B 84.043 94 14 1 1681 1774 141563375 141563467 7.500000e-14 89.8
16 TraesCS5D01G503700 chr2A 90.633 1153 72 17 865 2005 88661936 88663064 0.000000e+00 1498.0
17 TraesCS5D01G503700 chr2A 90.671 879 66 12 2402 3279 88669111 88669974 0.000000e+00 1155.0
18 TraesCS5D01G503700 chr2A 88.474 937 76 13 3284 4205 88670294 88671213 0.000000e+00 1103.0
19 TraesCS5D01G503700 chr2A 81.393 876 108 27 2802 3633 41162221 41161357 0.000000e+00 664.0
20 TraesCS5D01G503700 chr2A 83.511 564 57 21 4005 4559 88671112 88671648 1.360000e-135 494.0
21 TraesCS5D01G503700 chr2A 83.205 518 42 17 4845 5349 88671863 88672348 3.010000e-117 433.0
22 TraesCS5D01G503700 chr2A 80.682 264 19 7 496 757 88457018 88457251 5.600000e-40 176.0
23 TraesCS5D01G503700 chr2A 94.059 101 6 0 4681 4781 68155823 68155923 2.620000e-33 154.0
24 TraesCS5D01G503700 chr2A 94.059 101 6 0 4681 4781 728602664 728602564 2.620000e-33 154.0
25 TraesCS5D01G503700 chr2A 82.979 94 15 1 1681 1774 88669778 88669870 3.490000e-12 84.2
26 TraesCS5D01G503700 chr2D 89.592 1153 63 23 865 2005 88287893 88289000 0.000000e+00 1411.0
27 TraesCS5D01G503700 chr2D 88.864 907 68 14 2819 3711 88290446 88291333 0.000000e+00 1085.0
28 TraesCS5D01G503700 chr2D 91.481 493 38 2 3713 4205 88293549 88294037 0.000000e+00 675.0
29 TraesCS5D01G503700 chr2D 87.992 533 48 7 4833 5353 88301474 88302002 2.780000e-172 616.0
30 TraesCS5D01G503700 chr2D 86.667 360 44 4 4005 4362 88293936 88294293 3.950000e-106 396.0
31 TraesCS5D01G503700 chr2D 86.614 127 11 4 4422 4543 88294320 88294445 9.500000e-28 135.0
32 TraesCS5D01G503700 chr2D 78.899 218 18 8 497 712 88136730 88136921 7.400000e-24 122.0
33 TraesCS5D01G503700 chr7B 81.393 876 108 27 2802 3633 683946682 683947546 0.000000e+00 664.0
34 TraesCS5D01G503700 chr1D 81.207 878 108 28 2802 3633 97777468 97776602 0.000000e+00 654.0
35 TraesCS5D01G503700 chr6A 82.581 620 81 13 2802 3398 614472849 614473464 6.240000e-144 521.0
36 TraesCS5D01G503700 chr3D 84.644 534 52 15 2801 3308 497491474 497490945 6.290000e-139 505.0
37 TraesCS5D01G503700 chr3D 79.268 328 38 13 3326 3632 497381966 497381648 9.240000e-48 202.0
38 TraesCS5D01G503700 chr3D 94.059 101 6 0 4682 4782 71512812 71512912 2.620000e-33 154.0
39 TraesCS5D01G503700 chr3D 100.000 30 0 0 3637 3666 497381620 497381649 7.610000e-04 56.5
40 TraesCS5D01G503700 chr4B 95.000 100 5 0 4682 4781 646855992 646855893 2.030000e-34 158.0
41 TraesCS5D01G503700 chr4B 86.260 131 15 3 4657 4786 610759109 610759237 7.350000e-29 139.0
42 TraesCS5D01G503700 chr7D 94.898 98 5 0 4681 4778 168580016 168579919 2.620000e-33 154.0
43 TraesCS5D01G503700 chr6B 94.898 98 5 0 4682 4779 710231642 710231545 2.620000e-33 154.0
44 TraesCS5D01G503700 chr6B 97.059 34 1 0 4661 4694 149418759 149418726 2.120000e-04 58.4
45 TraesCS5D01G503700 chr1A 86.364 132 14 3 4680 4807 474641675 474641806 2.040000e-29 141.0
46 TraesCS5D01G503700 chr1A 97.500 40 0 1 2335 2373 539966749 539966710 3.520000e-07 67.6
47 TraesCS5D01G503700 chr3B 94.231 52 3 0 3581 3632 657539251 657539200 4.520000e-11 80.5
48 TraesCS5D01G503700 chr3B 95.556 45 1 1 2330 2373 224311018 224311062 2.720000e-08 71.3
49 TraesCS5D01G503700 chr3B 94.872 39 2 0 2214 2252 43713603 43713641 1.640000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G503700 chr5D 530423650 530429088 5438 False 10045.00 10045 100.00000 1 5439 1 chr5D.!!$F2 5438
1 TraesCS5D01G503700 chr5A 658670198 658674454 4256 False 1488.75 2970 91.57725 832 5439 4 chr5A.!!$F1 4607
2 TraesCS5D01G503700 chr5B 669670004 669674452 4448 False 1184.75 1871 88.95900 832 5439 4 chr5B.!!$F2 4607
3 TraesCS5D01G503700 chr5B 669662905 669663671 766 False 1118.00 1118 92.92100 1 774 1 chr5B.!!$F1 773
4 TraesCS5D01G503700 chr2B 141559099 141565017 5918 False 965.20 1779 86.32600 865 4639 4 chr2B.!!$F1 3774
5 TraesCS5D01G503700 chr2A 88661936 88663064 1128 False 1498.00 1498 90.63300 865 2005 1 chr2A.!!$F3 1140
6 TraesCS5D01G503700 chr2A 41161357 41162221 864 True 664.00 664 81.39300 2802 3633 1 chr2A.!!$R1 831
7 TraesCS5D01G503700 chr2A 88669111 88672348 3237 False 653.84 1155 85.76800 1681 5349 5 chr2A.!!$F4 3668
8 TraesCS5D01G503700 chr2D 88287893 88294445 6552 False 740.40 1411 88.64360 865 4543 5 chr2D.!!$F3 3678
9 TraesCS5D01G503700 chr2D 88301474 88302002 528 False 616.00 616 87.99200 4833 5353 1 chr2D.!!$F2 520
10 TraesCS5D01G503700 chr7B 683946682 683947546 864 False 664.00 664 81.39300 2802 3633 1 chr7B.!!$F1 831
11 TraesCS5D01G503700 chr1D 97776602 97777468 866 True 654.00 654 81.20700 2802 3633 1 chr1D.!!$R1 831
12 TraesCS5D01G503700 chr6A 614472849 614473464 615 False 521.00 521 82.58100 2802 3398 1 chr6A.!!$F1 596
13 TraesCS5D01G503700 chr3D 497490945 497491474 529 True 505.00 505 84.64400 2801 3308 1 chr3D.!!$R2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 428 0.038526 GAAAGAGTCGGCTCGGTTCA 60.039 55.0 23.38 0.0 46.03 3.18 F
1268 1297 0.809385 GCGCAGTGAGTAGTAGACCA 59.191 55.0 0.30 0.0 0.00 4.02 F
2016 2058 0.179040 TTGGTCCAACCGTCCAAGTC 60.179 55.0 0.00 0.0 42.58 3.01 F
2017 2059 1.052124 TGGTCCAACCGTCCAAGTCT 61.052 55.0 0.00 0.0 42.58 3.24 F
3850 8993 0.827368 GGTTCTAGGGAGGACAGCAG 59.173 60.0 0.00 0.0 31.96 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1302 0.039764 GGAAAAGCTAGGTTGGGGCT 59.960 55.000 8.16 0.0 37.99 5.19 R
2229 2282 3.893326 GCCCTTGCTTTTACATTGGAT 57.107 42.857 0.00 0.0 33.53 3.41 R
3702 6626 0.537188 CGGCCAAGTAGAGGACACAT 59.463 55.000 2.24 0.0 31.91 3.21 R
3967 9110 0.676736 CCTAGAATCTCGGTCCCTGC 59.323 60.000 0.00 0.0 0.00 4.85 R
4971 10489 0.319040 CCGACGCATAGGACCAGATG 60.319 60.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 7.995289 TGATTTATAACATGGTTTGCCTACTG 58.005 34.615 0.00 0.00 35.27 2.74
121 123 7.893124 ATTTGAGATGTGCTCCTCAATAAAT 57.107 32.000 0.00 3.02 45.43 1.40
159 161 3.696045 TGTCCATATTTCAACCCACCTG 58.304 45.455 0.00 0.00 0.00 4.00
244 246 0.872021 GGCGAACATAGTGGAGCTCG 60.872 60.000 7.83 0.00 0.00 5.03
245 247 0.100682 GCGAACATAGTGGAGCTCGA 59.899 55.000 7.83 0.00 0.00 4.04
246 248 1.269309 GCGAACATAGTGGAGCTCGAT 60.269 52.381 7.83 0.00 0.00 3.59
247 249 2.656085 CGAACATAGTGGAGCTCGATC 58.344 52.381 7.83 0.38 0.00 3.69
248 250 2.292016 CGAACATAGTGGAGCTCGATCT 59.708 50.000 7.83 8.26 0.00 2.75
274 276 8.184304 AGCTATGTTCGAAACTCCTATAGATT 57.816 34.615 0.00 0.00 0.00 2.40
299 303 0.250234 TGCAGGGATCGAAACTCCTG 59.750 55.000 17.05 17.05 46.93 3.86
331 335 1.208293 CAGGGGAGAGACTTTGGCTAC 59.792 57.143 0.00 0.00 0.00 3.58
341 345 4.369182 AGACTTTGGCTACATATACACGC 58.631 43.478 0.00 0.00 0.00 5.34
367 371 9.472995 CGTGTACATGTATTTGAGTATTTTCAC 57.527 33.333 9.18 6.59 0.00 3.18
387 391 4.577639 CACGTGAATATCCGTGTGATTTG 58.422 43.478 10.90 0.00 46.87 2.32
418 422 2.753055 AAAGGAGAAAGAGTCGGCTC 57.247 50.000 9.58 9.58 41.94 4.70
424 428 0.038526 GAAAGAGTCGGCTCGGTTCA 60.039 55.000 23.38 0.00 46.03 3.18
429 433 2.282958 TCGGCTCGGTTCAGGAGT 60.283 61.111 0.00 0.00 34.00 3.85
485 489 7.907214 ATCGACCTTGGCTATATGATTTAAC 57.093 36.000 0.00 0.00 0.00 2.01
511 515 9.512588 CTTGATTGATTAAGGCCTAGACATAAT 57.487 33.333 5.16 5.94 0.00 1.28
525 529 5.769967 AGACATAATATGCTCGATTTCGC 57.230 39.130 0.00 0.00 39.60 4.70
539 543 6.897138 GCTCGATTTCGCTGATATTTTATAGC 59.103 38.462 0.00 0.00 39.60 2.97
543 547 7.637519 CGATTTCGCTGATATTTTATAGCATGG 59.362 37.037 0.00 0.00 35.98 3.66
648 652 7.595819 TGTCCATATTTTTCCAACAACTTCT 57.404 32.000 0.00 0.00 0.00 2.85
649 653 8.017418 TGTCCATATTTTTCCAACAACTTCTT 57.983 30.769 0.00 0.00 0.00 2.52
650 654 8.141268 TGTCCATATTTTTCCAACAACTTCTTC 58.859 33.333 0.00 0.00 0.00 2.87
651 655 8.360390 GTCCATATTTTTCCAACAACTTCTTCT 58.640 33.333 0.00 0.00 0.00 2.85
703 707 8.026341 TCGACTATACTACATACAATCTTCCG 57.974 38.462 0.00 0.00 0.00 4.30
793 797 6.896021 TTCAGTACAGTACTCCTATATGCC 57.104 41.667 10.54 0.00 36.76 4.40
794 798 5.948842 TCAGTACAGTACTCCTATATGCCA 58.051 41.667 10.54 0.00 36.76 4.92
795 799 6.370453 TCAGTACAGTACTCCTATATGCCAA 58.630 40.000 10.54 0.00 36.76 4.52
796 800 6.837048 TCAGTACAGTACTCCTATATGCCAAA 59.163 38.462 10.54 0.00 36.76 3.28
797 801 7.343574 TCAGTACAGTACTCCTATATGCCAAAA 59.656 37.037 10.54 0.00 36.76 2.44
798 802 7.438459 CAGTACAGTACTCCTATATGCCAAAAC 59.562 40.741 10.54 0.00 36.76 2.43
799 803 6.308015 ACAGTACTCCTATATGCCAAAACA 57.692 37.500 0.00 0.00 0.00 2.83
800 804 6.113411 ACAGTACTCCTATATGCCAAAACAC 58.887 40.000 0.00 0.00 0.00 3.32
801 805 6.070194 ACAGTACTCCTATATGCCAAAACACT 60.070 38.462 0.00 0.00 0.00 3.55
802 806 7.125204 ACAGTACTCCTATATGCCAAAACACTA 59.875 37.037 0.00 0.00 0.00 2.74
803 807 7.438459 CAGTACTCCTATATGCCAAAACACTAC 59.562 40.741 0.00 0.00 0.00 2.73
804 808 6.308015 ACTCCTATATGCCAAAACACTACA 57.692 37.500 0.00 0.00 0.00 2.74
805 809 6.900194 ACTCCTATATGCCAAAACACTACAT 58.100 36.000 0.00 0.00 0.00 2.29
806 810 8.029782 ACTCCTATATGCCAAAACACTACATA 57.970 34.615 0.00 0.00 0.00 2.29
807 811 8.660435 ACTCCTATATGCCAAAACACTACATAT 58.340 33.333 0.00 0.00 37.59 1.78
808 812 8.846943 TCCTATATGCCAAAACACTACATATG 57.153 34.615 0.00 0.00 35.35 1.78
809 813 8.436778 TCCTATATGCCAAAACACTACATATGT 58.563 33.333 13.93 13.93 35.35 2.29
810 814 8.506437 CCTATATGCCAAAACACTACATATGTG 58.494 37.037 18.81 10.62 40.87 3.21
811 815 5.581126 ATGCCAAAACACTACATATGTGG 57.419 39.130 18.81 17.81 39.52 4.17
812 816 4.402829 TGCCAAAACACTACATATGTGGT 58.597 39.130 18.25 18.25 40.50 4.16
825 829 8.982723 ACTACATATGTGGTGATCTCTTTTACT 58.017 33.333 22.51 0.00 38.35 2.24
828 832 8.982723 ACATATGTGGTGATCTCTTTTACTAGT 58.017 33.333 7.78 0.00 0.00 2.57
829 833 9.469807 CATATGTGGTGATCTCTTTTACTAGTC 57.530 37.037 0.00 0.00 0.00 2.59
830 834 7.726033 ATGTGGTGATCTCTTTTACTAGTCT 57.274 36.000 0.00 0.00 0.00 3.24
855 859 0.813184 TCACCACCGACGTTAGATCC 59.187 55.000 0.00 0.00 0.00 3.36
897 901 2.444140 CTAGGACCGACCCCAGGG 60.444 72.222 0.00 0.00 40.05 4.45
924 933 1.914108 ACTAGCCAAGAACCCTAACCC 59.086 52.381 0.00 0.00 0.00 4.11
925 934 1.212195 CTAGCCAAGAACCCTAACCCC 59.788 57.143 0.00 0.00 0.00 4.95
978 990 2.830370 CAATCCGCTGCCCCTTCC 60.830 66.667 0.00 0.00 0.00 3.46
1185 1214 2.759795 GCCAAGTTCAGGGGCTCT 59.240 61.111 0.00 0.00 44.32 4.09
1268 1297 0.809385 GCGCAGTGAGTAGTAGACCA 59.191 55.000 0.30 0.00 0.00 4.02
1269 1298 1.467713 GCGCAGTGAGTAGTAGACCAC 60.468 57.143 0.30 0.00 32.43 4.16
1270 1299 1.810755 CGCAGTGAGTAGTAGACCACA 59.189 52.381 0.00 0.00 33.84 4.17
1271 1300 2.159503 CGCAGTGAGTAGTAGACCACAG 60.160 54.545 0.00 0.00 33.84 3.66
1273 1302 2.820197 CAGTGAGTAGTAGACCACAGCA 59.180 50.000 0.00 0.00 33.84 4.41
1274 1303 3.085533 AGTGAGTAGTAGACCACAGCAG 58.914 50.000 0.00 0.00 33.84 4.24
1278 1307 0.976073 TAGTAGACCACAGCAGCCCC 60.976 60.000 0.00 0.00 0.00 5.80
1279 1308 2.203922 TAGACCACAGCAGCCCCA 60.204 61.111 0.00 0.00 0.00 4.96
1327 1366 1.361668 CCGACGGATTTGGCACTGAG 61.362 60.000 8.64 0.00 0.00 3.35
1435 1474 0.316772 CGTTCGTCGCGTATGAGGAT 60.317 55.000 5.77 0.00 33.26 3.24
1504 1543 3.069079 ACTAGGTCGCTTCTGTCTGTA 57.931 47.619 0.00 0.00 0.00 2.74
1505 1544 3.011119 ACTAGGTCGCTTCTGTCTGTAG 58.989 50.000 0.00 0.00 0.00 2.74
1517 1556 3.321111 TCTGTCTGTAGTTCCAGTTGGTC 59.679 47.826 0.00 0.00 36.34 4.02
1519 1558 2.633481 GTCTGTAGTTCCAGTTGGTCCT 59.367 50.000 0.00 0.00 36.34 3.85
1545 1584 8.885494 TTTGCTGAAGTGCTAATATTTGTTTT 57.115 26.923 0.00 0.00 0.00 2.43
1560 1599 2.004017 TGTTTTGCTTCGTCTTCGTGT 58.996 42.857 0.00 0.00 38.33 4.49
1791 1830 6.707161 TCCTGCTTCTGAAATTTTCAAATTGG 59.293 34.615 12.62 9.97 39.58 3.16
1835 1876 6.377146 GGAATACACACAACCTATTCACCATT 59.623 38.462 0.00 0.00 31.18 3.16
1883 1924 9.890629 AGTGATGTTTTCTAACTATAGCATGAA 57.109 29.630 0.00 0.00 35.24 2.57
1886 1927 8.942338 ATGTTTTCTAACTATAGCATGAACGA 57.058 30.769 0.00 0.00 35.24 3.85
1899 1940 3.732212 CATGAACGAGGAGGATATTGCA 58.268 45.455 0.00 0.00 0.00 4.08
1978 2020 5.505780 ACAAGCAATTAACTACCTGGCATA 58.494 37.500 0.00 0.00 0.00 3.14
2009 2051 1.150536 ACTGCATTGGTCCAACCGT 59.849 52.632 6.41 0.00 42.58 4.83
2016 2058 0.179040 TTGGTCCAACCGTCCAAGTC 60.179 55.000 0.00 0.00 42.58 3.01
2017 2059 1.052124 TGGTCCAACCGTCCAAGTCT 61.052 55.000 0.00 0.00 42.58 3.24
2020 2062 2.294979 GTCCAACCGTCCAAGTCTTTT 58.705 47.619 0.00 0.00 0.00 2.27
2021 2063 2.686405 GTCCAACCGTCCAAGTCTTTTT 59.314 45.455 0.00 0.00 0.00 1.94
2051 2095 2.099756 ACTGAACACTGAGGCAAAAAGC 59.900 45.455 0.00 0.00 44.65 3.51
2282 2335 3.120321 TCGTTAGGAATGCACACAAGT 57.880 42.857 0.00 0.00 0.00 3.16
2314 2367 3.947196 CCTGCCTCATAGTAATTTGCACA 59.053 43.478 0.00 0.00 0.00 4.57
2419 4940 3.438781 TCCAATGGTCTGTGAAATAACGC 59.561 43.478 0.00 0.00 0.00 4.84
2465 4988 9.064706 CCTGCATTTCTCAAGATAAAGATATGT 57.935 33.333 0.00 0.00 35.01 2.29
2634 5157 5.363292 ACATGCTCCATTTATGCCATTGTTA 59.637 36.000 0.00 0.00 0.00 2.41
2831 5355 6.385033 CCCTATAGTTTATCGGTAACCTTCG 58.615 44.000 0.00 0.00 0.00 3.79
2867 5391 1.909700 ACCGTCATGATTGCCAACTT 58.090 45.000 0.00 0.00 0.00 2.66
3437 6355 3.181483 GGATGAGCCATTACCTGCAAAAG 60.181 47.826 0.00 0.00 36.34 2.27
3504 6424 2.231235 CCCACATTGCCAGAGGTTTTAC 59.769 50.000 0.00 0.00 0.00 2.01
3584 6508 5.043903 TGTATGCTAGAGATTGTCGCTTTC 58.956 41.667 0.00 0.00 0.00 2.62
3633 6557 2.421073 TGCTACATGCTTCACTGAATGC 59.579 45.455 0.00 0.00 43.37 3.56
3701 6625 1.422531 TTGTTGCCTGGCTGGAAATT 58.577 45.000 21.03 0.00 35.40 1.82
3702 6626 2.300956 TGTTGCCTGGCTGGAAATTA 57.699 45.000 21.03 0.87 35.40 1.40
3703 6627 2.818921 TGTTGCCTGGCTGGAAATTAT 58.181 42.857 21.03 0.00 35.40 1.28
3704 6628 2.496871 TGTTGCCTGGCTGGAAATTATG 59.503 45.455 21.03 0.00 35.40 1.90
3705 6629 2.497273 GTTGCCTGGCTGGAAATTATGT 59.503 45.455 21.03 0.00 35.40 2.29
3706 6630 2.101783 TGCCTGGCTGGAAATTATGTG 58.898 47.619 21.03 0.00 38.35 3.21
3707 6631 2.102578 GCCTGGCTGGAAATTATGTGT 58.897 47.619 15.36 0.00 38.35 3.72
3709 6633 2.689983 CCTGGCTGGAAATTATGTGTCC 59.310 50.000 4.05 0.00 38.35 4.02
3711 6635 3.620488 TGGCTGGAAATTATGTGTCCTC 58.380 45.455 0.00 0.00 32.28 3.71
3719 8855 5.297029 GGAAATTATGTGTCCTCTACTTGGC 59.703 44.000 0.00 0.00 0.00 4.52
3749 8885 6.509656 AGTTCATCAGTAACGTTGTTCAGTA 58.490 36.000 11.99 0.00 32.00 2.74
3758 8894 4.924305 ACGTTGTTCAGTAGTTCCAGTA 57.076 40.909 0.00 0.00 0.00 2.74
3759 8895 5.266733 ACGTTGTTCAGTAGTTCCAGTAA 57.733 39.130 0.00 0.00 0.00 2.24
3760 8896 5.663456 ACGTTGTTCAGTAGTTCCAGTAAA 58.337 37.500 0.00 0.00 0.00 2.01
3850 8993 0.827368 GGTTCTAGGGAGGACAGCAG 59.173 60.000 0.00 0.00 31.96 4.24
3857 9000 1.372683 GGAGGACAGCAGTGCAAGA 59.627 57.895 19.20 0.00 38.75 3.02
3887 9030 2.025981 TGACCATGATCCACCAAAGAGG 60.026 50.000 0.00 0.00 45.67 3.69
3932 9075 2.151502 AAGAAGAGGCGAGATCAGGA 57.848 50.000 0.00 0.00 0.00 3.86
3935 9078 1.336755 GAAGAGGCGAGATCAGGAGAC 59.663 57.143 0.00 0.00 0.00 3.36
3948 9091 1.630369 CAGGAGACAGGGATGGTCAAA 59.370 52.381 0.00 0.00 37.74 2.69
3967 9110 5.049818 GTCAAACCTCAAGATCAGAGTTGTG 60.050 44.000 12.47 5.76 0.00 3.33
4016 9160 5.064452 GCATGGTGATAGAGACACAAAAGAG 59.936 44.000 0.00 0.00 39.65 2.85
4073 9316 2.654079 AAGAGGCGACAGGCAGAGG 61.654 63.158 0.00 0.00 46.16 3.69
4111 9354 6.368516 GGAAGAGAAGAAAGATCAGACACAAG 59.631 42.308 0.00 0.00 0.00 3.16
4125 9368 2.432510 GACACAAGAGATAGGGACAGGG 59.567 54.545 0.00 0.00 0.00 4.45
4132 9375 1.749334 GATAGGGACAGGGACAGGCG 61.749 65.000 0.00 0.00 0.00 5.52
4133 9376 3.976490 TAGGGACAGGGACAGGCGG 62.976 68.421 0.00 0.00 0.00 6.13
4189 9432 0.692419 AGAGGCGATGACAGGGGAAT 60.692 55.000 0.00 0.00 0.00 3.01
4196 9439 3.181465 GCGATGACAGGGGAATAGAAGAA 60.181 47.826 0.00 0.00 0.00 2.52
4226 9469 1.141881 CAAGCGGTCTAGGCACGAT 59.858 57.895 9.05 0.16 0.00 3.73
4257 9500 0.393820 TGGCCGTTACGAAAGAAGGT 59.606 50.000 6.24 0.00 0.00 3.50
4258 9501 1.073964 GGCCGTTACGAAAGAAGGTC 58.926 55.000 6.24 0.00 0.00 3.85
4262 9505 3.846360 CCGTTACGAAAGAAGGTCTGAT 58.154 45.455 6.24 0.00 0.00 2.90
4289 9534 3.055312 AGGAAGAACGGTACAGGAAATCC 60.055 47.826 0.00 0.60 0.00 3.01
4297 9542 2.224305 GGTACAGGAAATCCCGGAGATG 60.224 54.545 0.73 0.00 40.87 2.90
4301 9546 3.144506 CAGGAAATCCCGGAGATGAATG 58.855 50.000 0.73 0.00 40.87 2.67
4303 9554 3.142174 GGAAATCCCGGAGATGAATGTC 58.858 50.000 0.73 0.00 34.56 3.06
4306 9557 0.686441 TCCCGGAGATGAATGTCGGT 60.686 55.000 0.73 0.00 39.13 4.69
4309 9560 2.159014 CCCGGAGATGAATGTCGGTTTA 60.159 50.000 0.73 0.00 39.13 2.01
4311 9562 4.127171 CCGGAGATGAATGTCGGTTTATT 58.873 43.478 0.00 0.00 36.38 1.40
4319 9570 5.197451 TGAATGTCGGTTTATTAGGGCATT 58.803 37.500 0.00 0.00 0.00 3.56
4332 9583 2.502510 GCATTCACTGCCGTTGCG 60.503 61.111 0.00 0.00 45.66 4.85
4398 9651 9.488124 CAATTTTGTTAGTTGTTTGATGTTTGG 57.512 29.630 0.00 0.00 0.00 3.28
4399 9652 6.654793 TTTGTTAGTTGTTTGATGTTTGGC 57.345 33.333 0.00 0.00 0.00 4.52
4401 9654 1.851658 AGTTGTTTGATGTTTGGCGC 58.148 45.000 0.00 0.00 0.00 6.53
4404 9657 2.979813 GTTGTTTGATGTTTGGCGCTAG 59.020 45.455 7.64 0.00 0.00 3.42
4405 9658 2.499197 TGTTTGATGTTTGGCGCTAGA 58.501 42.857 7.64 0.00 0.00 2.43
4406 9659 3.081061 TGTTTGATGTTTGGCGCTAGAT 58.919 40.909 7.64 0.00 0.00 1.98
4407 9660 3.119884 TGTTTGATGTTTGGCGCTAGATG 60.120 43.478 7.64 0.00 0.00 2.90
4408 9661 2.401583 TGATGTTTGGCGCTAGATGT 57.598 45.000 7.64 0.00 0.00 3.06
4409 9662 2.279741 TGATGTTTGGCGCTAGATGTC 58.720 47.619 7.64 0.00 0.00 3.06
4410 9663 1.599542 GATGTTTGGCGCTAGATGTCC 59.400 52.381 7.64 0.00 0.00 4.02
4411 9664 0.323302 TGTTTGGCGCTAGATGTCCA 59.677 50.000 7.64 0.00 0.00 4.02
4416 9669 1.517832 GCGCTAGATGTCCAGGTGT 59.482 57.895 0.00 0.00 0.00 4.16
4417 9670 0.744874 GCGCTAGATGTCCAGGTGTA 59.255 55.000 0.00 0.00 0.00 2.90
4419 9672 2.810650 CGCTAGATGTCCAGGTGTAAC 58.189 52.381 0.00 0.00 0.00 2.50
4439 9692 3.719871 ACCTGGTTGTTCTTTCCCTTTT 58.280 40.909 0.00 0.00 0.00 2.27
4440 9693 4.874199 ACCTGGTTGTTCTTTCCCTTTTA 58.126 39.130 0.00 0.00 0.00 1.52
4451 9704 9.210329 TGTTCTTTCCCTTTTACAAAGTTTTTC 57.790 29.630 0.00 0.00 0.00 2.29
4561 9947 7.954906 GTGAATTGTATCACTTCGGAAAATC 57.045 36.000 0.38 0.00 44.98 2.17
4564 9950 9.443323 TGAATTGTATCACTTCGGAAAATCTTA 57.557 29.630 0.00 0.00 0.00 2.10
4565 9951 9.704098 GAATTGTATCACTTCGGAAAATCTTAC 57.296 33.333 0.00 0.00 0.00 2.34
4568 9954 9.582431 TTGTATCACTTCGGAAAATCTTACTAG 57.418 33.333 0.00 0.00 0.00 2.57
4569 9955 7.705325 TGTATCACTTCGGAAAATCTTACTAGC 59.295 37.037 0.00 0.00 0.00 3.42
4570 9956 6.282199 TCACTTCGGAAAATCTTACTAGCT 57.718 37.500 0.00 0.00 0.00 3.32
4571 9957 6.100004 TCACTTCGGAAAATCTTACTAGCTG 58.900 40.000 0.00 0.00 0.00 4.24
4572 9958 4.870991 ACTTCGGAAAATCTTACTAGCTGC 59.129 41.667 0.00 0.00 0.00 5.25
4573 9959 4.465632 TCGGAAAATCTTACTAGCTGCA 57.534 40.909 1.02 0.00 0.00 4.41
4576 9965 4.572389 CGGAAAATCTTACTAGCTGCACAT 59.428 41.667 1.02 0.00 0.00 3.21
4578 9967 6.490534 GGAAAATCTTACTAGCTGCACATTC 58.509 40.000 1.02 0.00 0.00 2.67
4592 9981 3.019564 GCACATTCTTAGCACCTCCATT 58.980 45.455 0.00 0.00 0.00 3.16
4596 9985 2.698855 TCTTAGCACCTCCATTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
4597 9986 2.191400 TCTTAGCACCTCCATTCTGCT 58.809 47.619 0.00 0.00 43.67 4.24
4598 9987 3.374764 TCTTAGCACCTCCATTCTGCTA 58.625 45.455 0.00 0.00 41.52 3.49
4599 9988 3.969976 TCTTAGCACCTCCATTCTGCTAT 59.030 43.478 0.00 0.00 41.86 2.97
4686 10076 8.700439 ATACTCTCTCTGTTCCTAAATACTCC 57.300 38.462 0.00 0.00 0.00 3.85
4687 10077 5.894964 ACTCTCTCTGTTCCTAAATACTCCC 59.105 44.000 0.00 0.00 0.00 4.30
4688 10078 6.093617 TCTCTCTGTTCCTAAATACTCCCT 57.906 41.667 0.00 0.00 0.00 4.20
4689 10079 6.130569 TCTCTCTGTTCCTAAATACTCCCTC 58.869 44.000 0.00 0.00 0.00 4.30
4690 10080 5.209659 TCTCTGTTCCTAAATACTCCCTCC 58.790 45.833 0.00 0.00 0.00 4.30
4692 10082 5.600749 TCTGTTCCTAAATACTCCCTCCTT 58.399 41.667 0.00 0.00 0.00 3.36
4693 10083 5.661759 TCTGTTCCTAAATACTCCCTCCTTC 59.338 44.000 0.00 0.00 0.00 3.46
4694 10084 4.720273 TGTTCCTAAATACTCCCTCCTTCC 59.280 45.833 0.00 0.00 0.00 3.46
4695 10085 3.937751 TCCTAAATACTCCCTCCTTCCC 58.062 50.000 0.00 0.00 0.00 3.97
4698 10088 4.477213 CCTAAATACTCCCTCCTTCCCAAA 59.523 45.833 0.00 0.00 0.00 3.28
4699 10089 5.044402 CCTAAATACTCCCTCCTTCCCAAAA 60.044 44.000 0.00 0.00 0.00 2.44
4700 10090 5.552430 AAATACTCCCTCCTTCCCAAAAT 57.448 39.130 0.00 0.00 0.00 1.82
4701 10091 6.668133 AAATACTCCCTCCTTCCCAAAATA 57.332 37.500 0.00 0.00 0.00 1.40
4704 10094 3.923425 ACTCCCTCCTTCCCAAAATAAGT 59.077 43.478 0.00 0.00 0.00 2.24
4705 10095 4.263949 ACTCCCTCCTTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
4706 10096 2.760650 CCCTCCTTCCCAAAATAAGTGC 59.239 50.000 0.00 0.00 0.00 4.40
4707 10097 2.760650 CCTCCTTCCCAAAATAAGTGCC 59.239 50.000 0.00 0.00 0.00 5.01
4708 10098 3.564352 CCTCCTTCCCAAAATAAGTGCCT 60.564 47.826 0.00 0.00 0.00 4.75
4709 10099 4.089361 CTCCTTCCCAAAATAAGTGCCTT 58.911 43.478 0.00 0.00 0.00 4.35
4712 10102 5.479027 TCCTTCCCAAAATAAGTGCCTTAAC 59.521 40.000 0.00 0.00 29.35 2.01
4713 10103 5.337250 CCTTCCCAAAATAAGTGCCTTAACC 60.337 44.000 0.00 0.00 29.35 2.85
4714 10104 5.005628 TCCCAAAATAAGTGCCTTAACCT 57.994 39.130 0.00 0.00 29.35 3.50
4716 10106 6.553857 TCCCAAAATAAGTGCCTTAACCTTA 58.446 36.000 0.00 0.00 29.35 2.69
4717 10107 6.661805 TCCCAAAATAAGTGCCTTAACCTTAG 59.338 38.462 0.00 0.00 29.35 2.18
4718 10108 6.436218 CCCAAAATAAGTGCCTTAACCTTAGT 59.564 38.462 0.00 0.00 29.35 2.24
4755 10262 9.310716 ACTAAAGTTAGTACAAAGTTGAGACAC 57.689 33.333 1.81 0.00 41.92 3.67
4758 10265 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
4768 10275 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
4769 10276 5.238650 AGTTGAGACACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
4771 10278 4.994852 TGAGACACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
4772 10279 4.324267 AGACACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
4773 10280 3.418047 ACACTTATTTTGGAACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
4775 10282 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
4776 10283 3.329814 ACTTATTTTGGAACGGAGGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
4777 10284 4.533311 ACTTATTTTGGAACGGAGGGAGTA 59.467 41.667 0.00 0.00 0.00 2.59
4778 10285 5.191124 ACTTATTTTGGAACGGAGGGAGTAT 59.809 40.000 0.00 0.00 0.00 2.12
4780 10287 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
4781 10288 4.682778 TTTGGAACGGAGGGAGTATATG 57.317 45.455 0.00 0.00 0.00 1.78
4782 10289 3.605726 TGGAACGGAGGGAGTATATGA 57.394 47.619 0.00 0.00 0.00 2.15
4783 10290 3.228453 TGGAACGGAGGGAGTATATGAC 58.772 50.000 0.00 0.00 0.00 3.06
4784 10291 3.228453 GGAACGGAGGGAGTATATGACA 58.772 50.000 0.00 0.00 0.00 3.58
4785 10292 3.833070 GGAACGGAGGGAGTATATGACAT 59.167 47.826 0.00 0.00 0.00 3.06
4786 10293 4.283722 GGAACGGAGGGAGTATATGACATT 59.716 45.833 0.00 0.00 0.00 2.71
4788 10295 5.979288 ACGGAGGGAGTATATGACATTAC 57.021 43.478 0.00 0.00 0.00 1.89
4789 10296 4.771054 ACGGAGGGAGTATATGACATTACC 59.229 45.833 0.00 0.00 0.00 2.85
4790 10297 4.159879 CGGAGGGAGTATATGACATTACCC 59.840 50.000 0.00 0.00 36.67 3.69
4793 10300 6.043938 GGAGGGAGTATATGACATTACCCAAA 59.956 42.308 0.00 0.00 38.62 3.28
4795 10302 5.699458 GGGAGTATATGACATTACCCAAACG 59.301 44.000 0.00 0.00 36.47 3.60
4796 10303 6.285990 GGAGTATATGACATTACCCAAACGT 58.714 40.000 0.00 0.00 0.00 3.99
4797 10304 6.423001 GGAGTATATGACATTACCCAAACGTC 59.577 42.308 0.00 0.00 0.00 4.34
4798 10305 6.880484 AGTATATGACATTACCCAAACGTCA 58.120 36.000 0.00 0.00 40.59 4.35
4799 10306 7.506114 AGTATATGACATTACCCAAACGTCAT 58.494 34.615 8.26 8.26 46.24 3.06
4804 10311 8.918202 ATGACATTACCCAAACGTCATATATT 57.082 30.769 0.00 0.00 43.58 1.28
4805 10312 8.740123 TGACATTACCCAAACGTCATATATTT 57.260 30.769 0.00 0.00 31.92 1.40
4806 10313 8.616942 TGACATTACCCAAACGTCATATATTTG 58.383 33.333 0.00 0.00 31.92 2.32
4954 10467 6.073003 CGAAGGTTTCTGCTAGACTTCAAAAT 60.073 38.462 0.00 0.00 35.33 1.82
4971 10489 5.525199 TCAAAATAGAAAAAGTGAACGCCC 58.475 37.500 0.00 0.00 0.00 6.13
5000 10525 0.454600 TATGCGTCGGAGAAGTCCAC 59.545 55.000 0.00 0.00 44.18 4.02
5094 10619 2.260434 GGCTTACTGTCGGCGACA 59.740 61.111 36.84 36.84 40.50 4.35
5190 10715 3.697747 TCGAACCGGGATGCCGTT 61.698 61.111 24.84 17.70 0.00 4.44
5295 10820 1.469767 CGCATCGTCACTTCCATCTCA 60.470 52.381 0.00 0.00 0.00 3.27
5343 10872 4.041567 TGGTGAGTTTCAGAAGGAAGCATA 59.958 41.667 0.00 0.00 39.01 3.14
5372 10901 4.326826 CTTGCTCAGTGAATTCAGGGTTA 58.673 43.478 8.80 0.00 0.00 2.85
5386 10915 2.689983 CAGGGTTAAATCATGGAGGCAC 59.310 50.000 0.00 0.00 0.00 5.01
5416 10945 3.281727 ACAACAGCTTTCTGGAACTCA 57.718 42.857 0.00 0.00 44.54 3.41
5418 10947 4.210331 ACAACAGCTTTCTGGAACTCAAT 58.790 39.130 0.00 0.00 44.54 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.421268 TGCTATGTCCAGGCCTTATGG 59.579 52.381 0.00 1.75 39.33 2.74
9 10 2.553904 GCATGCTATGTCCAGGCCTTAT 60.554 50.000 11.37 0.00 34.23 1.73
103 105 9.508567 GTTTTAAGATTTATTGAGGAGCACATC 57.491 33.333 0.00 0.00 0.00 3.06
132 134 8.285891 AGGTGGGTTGAAATATGGACAATATTA 58.714 33.333 0.00 0.00 40.00 0.98
159 161 0.888736 TATATGTGCACATGGGCCGC 60.889 55.000 36.72 11.18 37.15 6.53
212 214 3.829886 TGTTCGCCTTAGCAAATTCAG 57.170 42.857 0.00 0.00 39.83 3.02
244 246 6.079424 AGGAGTTTCGAACATAGCTAGATC 57.921 41.667 0.00 0.00 0.00 2.75
245 247 7.768807 ATAGGAGTTTCGAACATAGCTAGAT 57.231 36.000 0.00 0.00 0.00 1.98
246 248 8.155510 TCTATAGGAGTTTCGAACATAGCTAGA 58.844 37.037 0.00 0.00 0.00 2.43
247 249 8.325421 TCTATAGGAGTTTCGAACATAGCTAG 57.675 38.462 0.00 0.00 0.00 3.42
248 250 8.865420 ATCTATAGGAGTTTCGAACATAGCTA 57.135 34.615 0.00 0.00 0.00 3.32
283 287 3.383698 TCTACAGGAGTTTCGATCCCT 57.616 47.619 0.00 0.00 37.57 4.20
290 294 4.697514 TGCTATGCATCTACAGGAGTTTC 58.302 43.478 0.19 0.00 31.71 2.78
299 303 2.233431 CTCTCCCCTGCTATGCATCTAC 59.767 54.545 0.19 0.00 38.13 2.59
341 345 9.472995 GTGAAAATACTCAAATACATGTACACG 57.527 33.333 7.96 0.00 0.00 4.49
367 371 4.092821 ACACAAATCACACGGATATTCACG 59.907 41.667 0.00 0.00 34.28 4.35
401 405 1.316706 CCGAGCCGACTCTTTCTCCT 61.317 60.000 0.00 0.00 41.09 3.69
403 407 0.244178 AACCGAGCCGACTCTTTCTC 59.756 55.000 0.00 0.00 41.09 2.87
404 408 0.244178 GAACCGAGCCGACTCTTTCT 59.756 55.000 0.00 0.00 41.09 2.52
406 410 0.038159 CTGAACCGAGCCGACTCTTT 60.038 55.000 0.00 0.00 41.09 2.52
414 418 0.606604 TTGTACTCCTGAACCGAGCC 59.393 55.000 0.00 0.00 0.00 4.70
416 420 5.238583 AGAAAATTGTACTCCTGAACCGAG 58.761 41.667 0.00 0.00 0.00 4.63
418 422 5.941948 AAGAAAATTGTACTCCTGAACCG 57.058 39.130 0.00 0.00 0.00 4.44
456 460 6.850752 TCATATAGCCAAGGTCGATAATGA 57.149 37.500 0.00 0.00 0.00 2.57
485 489 8.908786 TTATGTCTAGGCCTTAATCAATCAAG 57.091 34.615 12.58 0.00 0.00 3.02
511 515 6.785488 AAAATATCAGCGAAATCGAGCATA 57.215 33.333 7.06 0.00 43.02 3.14
539 543 9.507329 ACTAGTCATAATAATAGGCAAACCATG 57.493 33.333 0.00 0.00 39.06 3.66
642 646 5.237815 TGTCGTGCATAATGAGAAGAAGTT 58.762 37.500 0.00 0.00 0.00 2.66
643 647 4.820897 TGTCGTGCATAATGAGAAGAAGT 58.179 39.130 0.00 0.00 0.00 3.01
648 652 3.796717 GTCGATGTCGTGCATAATGAGAA 59.203 43.478 2.04 0.00 38.06 2.87
649 653 3.372060 GTCGATGTCGTGCATAATGAGA 58.628 45.455 2.04 0.00 38.06 3.27
650 654 2.472861 GGTCGATGTCGTGCATAATGAG 59.527 50.000 2.04 0.00 38.06 2.90
651 655 2.469826 GGTCGATGTCGTGCATAATGA 58.530 47.619 2.04 0.00 38.06 2.57
768 772 8.168058 TGGCATATAGGAGTACTGTACTGAATA 58.832 37.037 24.15 16.94 39.59 1.75
774 778 7.224167 GTGTTTTGGCATATAGGAGTACTGTAC 59.776 40.741 9.93 9.93 0.00 2.90
775 779 7.125204 AGTGTTTTGGCATATAGGAGTACTGTA 59.875 37.037 0.00 0.00 0.00 2.74
776 780 6.070194 AGTGTTTTGGCATATAGGAGTACTGT 60.070 38.462 0.00 0.00 0.00 3.55
777 781 6.349300 AGTGTTTTGGCATATAGGAGTACTG 58.651 40.000 0.00 0.00 0.00 2.74
778 782 6.561519 AGTGTTTTGGCATATAGGAGTACT 57.438 37.500 0.00 0.00 0.00 2.73
779 783 7.270047 TGTAGTGTTTTGGCATATAGGAGTAC 58.730 38.462 0.00 0.00 0.00 2.73
780 784 7.426606 TGTAGTGTTTTGGCATATAGGAGTA 57.573 36.000 0.00 0.00 0.00 2.59
781 785 6.308015 TGTAGTGTTTTGGCATATAGGAGT 57.692 37.500 0.00 0.00 0.00 3.85
782 786 8.939929 CATATGTAGTGTTTTGGCATATAGGAG 58.060 37.037 0.00 0.00 33.16 3.69
783 787 8.436778 ACATATGTAGTGTTTTGGCATATAGGA 58.563 33.333 6.56 0.00 33.16 2.94
784 788 8.506437 CACATATGTAGTGTTTTGGCATATAGG 58.494 37.037 8.32 0.00 33.16 2.57
785 789 8.506437 CCACATATGTAGTGTTTTGGCATATAG 58.494 37.037 8.32 0.00 35.24 1.31
786 790 7.996066 ACCACATATGTAGTGTTTTGGCATATA 59.004 33.333 8.32 0.00 35.24 0.86
787 791 6.833416 ACCACATATGTAGTGTTTTGGCATAT 59.167 34.615 8.32 0.00 35.24 1.78
788 792 6.094742 CACCACATATGTAGTGTTTTGGCATA 59.905 38.462 21.84 0.00 33.89 3.14
789 793 5.016173 ACCACATATGTAGTGTTTTGGCAT 58.984 37.500 8.32 0.00 35.24 4.40
790 794 4.217334 CACCACATATGTAGTGTTTTGGCA 59.783 41.667 21.84 0.00 33.89 4.92
791 795 4.457603 TCACCACATATGTAGTGTTTTGGC 59.542 41.667 26.65 0.00 38.50 4.52
792 796 6.599244 AGATCACCACATATGTAGTGTTTTGG 59.401 38.462 26.65 15.94 38.50 3.28
793 797 7.550551 AGAGATCACCACATATGTAGTGTTTTG 59.449 37.037 26.65 8.05 38.50 2.44
794 798 7.624549 AGAGATCACCACATATGTAGTGTTTT 58.375 34.615 26.65 17.36 38.50 2.43
795 799 7.187824 AGAGATCACCACATATGTAGTGTTT 57.812 36.000 26.65 18.33 38.50 2.83
796 800 6.798427 AGAGATCACCACATATGTAGTGTT 57.202 37.500 26.65 21.06 38.50 3.32
797 801 6.798427 AAGAGATCACCACATATGTAGTGT 57.202 37.500 26.65 17.35 38.50 3.55
798 802 9.035607 GTAAAAGAGATCACCACATATGTAGTG 57.964 37.037 23.50 23.50 38.67 2.74
799 803 8.982723 AGTAAAAGAGATCACCACATATGTAGT 58.017 33.333 8.32 4.29 0.00 2.73
802 806 8.982723 ACTAGTAAAAGAGATCACCACATATGT 58.017 33.333 1.41 1.41 0.00 2.29
803 807 9.469807 GACTAGTAAAAGAGATCACCACATATG 57.530 37.037 0.00 0.00 0.00 1.78
804 808 9.427821 AGACTAGTAAAAGAGATCACCACATAT 57.572 33.333 0.00 0.00 0.00 1.78
805 809 8.824756 AGACTAGTAAAAGAGATCACCACATA 57.175 34.615 0.00 0.00 0.00 2.29
806 810 7.726033 AGACTAGTAAAAGAGATCACCACAT 57.274 36.000 0.00 0.00 0.00 3.21
807 811 7.378966 CAAGACTAGTAAAAGAGATCACCACA 58.621 38.462 0.00 0.00 0.00 4.17
808 812 6.814146 CCAAGACTAGTAAAAGAGATCACCAC 59.186 42.308 0.00 0.00 0.00 4.16
809 813 6.574465 GCCAAGACTAGTAAAAGAGATCACCA 60.574 42.308 0.00 0.00 0.00 4.17
810 814 5.813157 GCCAAGACTAGTAAAAGAGATCACC 59.187 44.000 0.00 0.00 0.00 4.02
811 815 6.398918 TGCCAAGACTAGTAAAAGAGATCAC 58.601 40.000 0.00 0.00 0.00 3.06
812 816 6.605471 TGCCAAGACTAGTAAAAGAGATCA 57.395 37.500 0.00 0.00 0.00 2.92
813 817 7.223777 GTGATGCCAAGACTAGTAAAAGAGATC 59.776 40.741 0.00 0.00 0.00 2.75
814 818 7.044798 GTGATGCCAAGACTAGTAAAAGAGAT 58.955 38.462 0.00 0.00 0.00 2.75
815 819 6.398918 GTGATGCCAAGACTAGTAAAAGAGA 58.601 40.000 0.00 0.00 0.00 3.10
816 820 5.582665 GGTGATGCCAAGACTAGTAAAAGAG 59.417 44.000 0.00 0.00 37.17 2.85
817 821 5.012664 TGGTGATGCCAAGACTAGTAAAAGA 59.987 40.000 0.00 0.00 45.94 2.52
818 822 5.245531 TGGTGATGCCAAGACTAGTAAAAG 58.754 41.667 0.00 0.00 45.94 2.27
819 823 5.235850 TGGTGATGCCAAGACTAGTAAAA 57.764 39.130 0.00 0.00 45.94 1.52
820 824 4.901197 TGGTGATGCCAAGACTAGTAAA 57.099 40.909 0.00 0.00 45.94 2.01
855 859 3.689161 TGCAATCTCCACCGTAGATTTTG 59.311 43.478 0.00 0.00 36.51 2.44
932 944 0.845102 GAGGGGAAGAAGGTGGGGAA 60.845 60.000 0.00 0.00 0.00 3.97
978 990 2.615912 GGAATCTCGGGCAGAATTTCTG 59.384 50.000 19.92 19.92 46.90 3.02
1261 1290 2.124507 TTGGGGCTGCTGTGGTCTAC 62.125 60.000 0.00 0.00 0.00 2.59
1268 1297 3.081554 CTAGGTTGGGGCTGCTGT 58.918 61.111 0.00 0.00 0.00 4.40
1269 1298 2.439156 GCTAGGTTGGGGCTGCTG 60.439 66.667 0.00 0.00 0.00 4.41
1270 1299 1.793820 AAAGCTAGGTTGGGGCTGCT 61.794 55.000 8.16 0.00 36.37 4.24
1271 1300 0.900182 AAAAGCTAGGTTGGGGCTGC 60.900 55.000 8.16 0.00 36.37 5.25
1273 1302 0.039764 GGAAAAGCTAGGTTGGGGCT 59.960 55.000 8.16 0.00 37.99 5.19
1274 1303 1.313091 CGGAAAAGCTAGGTTGGGGC 61.313 60.000 8.16 0.00 0.00 5.80
1278 1307 1.644786 CGGGCGGAAAAGCTAGGTTG 61.645 60.000 8.16 0.00 37.29 3.77
1279 1308 1.376812 CGGGCGGAAAAGCTAGGTT 60.377 57.895 0.12 0.12 37.29 3.50
1327 1366 2.338500 AGAAAAGAGATCGAACACCGC 58.662 47.619 0.00 0.00 38.37 5.68
1332 1371 5.751028 CCATACCTGAGAAAAGAGATCGAAC 59.249 44.000 0.00 0.00 0.00 3.95
1334 1373 4.202161 GCCATACCTGAGAAAAGAGATCGA 60.202 45.833 0.00 0.00 0.00 3.59
1344 1383 0.824109 CACCTCGCCATACCTGAGAA 59.176 55.000 0.00 0.00 31.31 2.87
1435 1474 0.318441 CAAGAACCGTGCTCCTCTGA 59.682 55.000 0.00 0.00 0.00 3.27
1459 1498 2.548547 GGGGAAAAGGGCCTCACCT 61.549 63.158 6.46 0.00 44.56 4.00
1470 1509 3.516700 CGACCTAGTAGGAAAGGGGAAAA 59.483 47.826 23.50 0.00 37.67 2.29
1504 1543 2.031870 GCAAAAGGACCAACTGGAACT 58.968 47.619 1.86 0.00 38.94 3.01
1505 1544 2.031870 AGCAAAAGGACCAACTGGAAC 58.968 47.619 1.86 0.00 38.94 3.62
1517 1556 7.092716 ACAAATATTAGCACTTCAGCAAAAGG 58.907 34.615 3.53 0.00 36.85 3.11
1519 1558 8.885494 AAACAAATATTAGCACTTCAGCAAAA 57.115 26.923 0.00 0.00 36.85 2.44
1545 1584 1.954146 GCCACACGAAGACGAAGCA 60.954 57.895 0.00 0.00 42.66 3.91
1560 1599 0.818938 TCAAGTTATCTACGCGGCCA 59.181 50.000 12.47 0.00 0.00 5.36
1835 1876 2.299013 AGTCCAAATCACTACGAGCACA 59.701 45.455 0.00 0.00 0.00 4.57
1883 1924 4.780815 TGATTTTGCAATATCCTCCTCGT 58.219 39.130 22.18 0.00 0.00 4.18
1886 1927 7.300658 ACCTAATGATTTTGCAATATCCTCCT 58.699 34.615 22.18 9.96 0.00 3.69
1927 1968 6.985645 GCATTCCTACAAATAATCAAATGGCA 59.014 34.615 0.00 0.00 0.00 4.92
1942 1983 4.870123 ATTGCTTGTTTGCATTCCTACA 57.130 36.364 0.00 0.00 42.96 2.74
1978 2020 6.239120 GGACCAATGCAGTGAAATATTGCTAT 60.239 38.462 17.16 0.00 42.07 2.97
2051 2095 5.930837 TTTTCTAATAAATGGCTGTGGGG 57.069 39.130 0.00 0.00 0.00 4.96
2145 2198 5.552870 ACAGACTCTGTTGTCCTTGTAAT 57.447 39.130 5.82 0.00 42.59 1.89
2169 2222 5.832539 ATATAGTCCTGCTGCAATTAGGT 57.167 39.130 3.02 0.00 33.30 3.08
2229 2282 3.893326 GCCCTTGCTTTTACATTGGAT 57.107 42.857 0.00 0.00 33.53 3.41
2282 2335 5.435686 ACTATGAGGCAGGTTGTAAATCA 57.564 39.130 0.00 0.00 0.00 2.57
2287 2340 5.588648 GCAAATTACTATGAGGCAGGTTGTA 59.411 40.000 0.00 0.00 0.00 2.41
2419 4940 6.597672 TGCAGGTGTAAATTATTACCACAGAG 59.402 38.462 10.56 1.34 40.61 3.35
2465 4988 9.715121 CCTTACTGTACAAGTATAAGTTTCCAA 57.285 33.333 0.00 0.00 41.10 3.53
2634 5157 6.238925 GCATGTAACCAAACCTAGAACAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
2831 5355 4.233005 GACGGTTCAGTGGAAGTACTTAC 58.767 47.826 11.20 11.20 32.62 2.34
2867 5391 9.913310 TGAAATATAACCATGAACACCAGAATA 57.087 29.630 0.00 0.00 0.00 1.75
3304 6181 1.414897 GACGTCGTGGCGAAATGAC 59.585 57.895 0.63 0.00 37.72 3.06
3357 6243 3.709987 AGCACAAGTTTTCAGCATGTTC 58.290 40.909 0.00 0.00 37.40 3.18
3360 6246 6.862608 TGTTATAAGCACAAGTTTTCAGCATG 59.137 34.615 0.00 0.00 37.54 4.06
3437 6355 6.216569 TCTGCTACGGACTTCATGAAATATC 58.783 40.000 9.88 7.44 0.00 1.63
3504 6424 4.201802 GCTTGTGTTTCCAACAACAAATGG 60.202 41.667 0.00 0.00 44.16 3.16
3584 6508 8.422457 GCTGCAAAAATATCATAAATCATGTCG 58.578 33.333 0.00 0.00 35.96 4.35
3701 6625 1.754803 CGGCCAAGTAGAGGACACATA 59.245 52.381 2.24 0.00 31.91 2.29
3702 6626 0.537188 CGGCCAAGTAGAGGACACAT 59.463 55.000 2.24 0.00 31.91 3.21
3703 6627 0.830444 ACGGCCAAGTAGAGGACACA 60.830 55.000 2.24 0.00 31.91 3.72
3704 6628 1.180029 TACGGCCAAGTAGAGGACAC 58.820 55.000 2.24 0.00 31.91 3.67
3705 6629 2.154567 ATACGGCCAAGTAGAGGACA 57.845 50.000 2.24 0.00 31.91 4.02
3706 6630 3.220940 ACTATACGGCCAAGTAGAGGAC 58.779 50.000 14.50 0.00 39.49 3.85
3707 6631 3.589951 ACTATACGGCCAAGTAGAGGA 57.410 47.619 14.50 0.00 39.49 3.71
3709 6633 4.913335 TGAACTATACGGCCAAGTAGAG 57.087 45.455 2.24 7.23 40.59 2.43
3711 6635 5.196341 TGATGAACTATACGGCCAAGTAG 57.804 43.478 2.24 3.53 0.00 2.57
3719 8855 6.032094 ACAACGTTACTGATGAACTATACGG 58.968 40.000 0.00 0.00 32.54 4.02
3749 8885 4.257267 GCAATGGCTTTTTACTGGAACT 57.743 40.909 0.00 0.00 36.96 3.01
3850 8993 2.177531 CATGCTGCCGTCTTGCAC 59.822 61.111 0.00 0.00 39.63 4.57
3857 9000 0.816825 GATCATGGTCATGCTGCCGT 60.817 55.000 0.00 0.00 38.65 5.68
3887 9030 3.069443 TCCTGTCAGGGAAATTTTTGTGC 59.931 43.478 19.11 0.00 35.59 4.57
3932 9075 1.630878 GAGGTTTGACCATCCCTGTCT 59.369 52.381 0.00 0.00 41.95 3.41
3935 9078 2.040278 TCTTGAGGTTTGACCATCCCTG 59.960 50.000 0.00 0.00 41.95 4.45
3948 9091 2.369860 TGCACAACTCTGATCTTGAGGT 59.630 45.455 16.61 10.06 35.98 3.85
3967 9110 0.676736 CCTAGAATCTCGGTCCCTGC 59.323 60.000 0.00 0.00 0.00 4.85
3992 9136 4.937620 TCTTTTGTGTCTCTATCACCATGC 59.062 41.667 0.00 0.00 35.25 4.06
4016 9160 0.946221 CGTGCCTGTTCCTGTCACTC 60.946 60.000 0.00 0.00 0.00 3.51
4073 9316 0.543749 CTCTTCCCCTGTCATCACCC 59.456 60.000 0.00 0.00 0.00 4.61
4111 9354 1.710816 CCTGTCCCTGTCCCTATCTC 58.289 60.000 0.00 0.00 0.00 2.75
4125 9368 4.542075 GGATTTCTCCCGCCTGTC 57.458 61.111 0.00 0.00 35.28 3.51
4133 9376 3.312890 TGATCTCTCAGGGGATTTCTCC 58.687 50.000 0.00 0.00 41.26 3.71
4189 9432 5.659463 GCTTGCTCTCTGATCTTTCTTCTA 58.341 41.667 0.00 0.00 0.00 2.10
4196 9439 0.901124 ACCGCTTGCTCTCTGATCTT 59.099 50.000 0.00 0.00 0.00 2.40
4226 9469 1.568504 AACGGCCACCAGAATCTCTA 58.431 50.000 2.24 0.00 0.00 2.43
4257 9500 3.165875 ACCGTTCTTCCTCTTCATCAGA 58.834 45.455 0.00 0.00 0.00 3.27
4258 9501 3.601443 ACCGTTCTTCCTCTTCATCAG 57.399 47.619 0.00 0.00 0.00 2.90
4262 9505 2.561419 CCTGTACCGTTCTTCCTCTTCA 59.439 50.000 0.00 0.00 0.00 3.02
4289 9534 2.024176 AAACCGACATTCATCTCCGG 57.976 50.000 0.00 0.00 45.09 5.14
4297 9542 5.298276 TGAATGCCCTAATAAACCGACATTC 59.702 40.000 0.00 0.00 41.43 2.67
4301 9546 4.035208 CAGTGAATGCCCTAATAAACCGAC 59.965 45.833 0.00 0.00 0.00 4.79
4303 9554 4.552166 CAGTGAATGCCCTAATAAACCG 57.448 45.455 0.00 0.00 0.00 4.44
4332 9583 7.876582 AGTACAAACATCAACCTTACTAGAACC 59.123 37.037 0.00 0.00 0.00 3.62
4386 9639 3.119849 ACATCTAGCGCCAAACATCAAAC 60.120 43.478 2.29 0.00 0.00 2.93
4391 9644 1.065491 TGGACATCTAGCGCCAAACAT 60.065 47.619 2.29 0.00 0.00 2.71
4392 9645 0.323302 TGGACATCTAGCGCCAAACA 59.677 50.000 2.29 0.00 0.00 2.83
4393 9646 1.009829 CTGGACATCTAGCGCCAAAC 58.990 55.000 2.29 0.00 0.00 2.93
4394 9647 0.107703 CCTGGACATCTAGCGCCAAA 60.108 55.000 2.29 0.00 0.00 3.28
4397 9650 1.227380 CACCTGGACATCTAGCGCC 60.227 63.158 2.29 0.00 0.00 6.53
4398 9651 0.744874 TACACCTGGACATCTAGCGC 59.255 55.000 0.00 0.00 0.00 5.92
4399 9652 2.481449 GGTTACACCTGGACATCTAGCG 60.481 54.545 0.00 0.00 34.73 4.26
4416 9669 4.529716 AAGGGAAAGAACAACCAGGTTA 57.470 40.909 3.89 0.00 0.00 2.85
4417 9670 3.398318 AAGGGAAAGAACAACCAGGTT 57.602 42.857 0.00 0.00 0.00 3.50
4419 9672 4.647399 TGTAAAAGGGAAAGAACAACCAGG 59.353 41.667 0.00 0.00 0.00 4.45
4423 9676 8.542497 AAACTTTGTAAAAGGGAAAGAACAAC 57.458 30.769 4.86 0.00 32.18 3.32
4433 9686 9.594478 AGTATGTTGAAAAACTTTGTAAAAGGG 57.406 29.630 4.86 0.00 0.00 3.95
4439 9692 7.502895 TGGGCTAGTATGTTGAAAAACTTTGTA 59.497 33.333 0.00 0.00 0.00 2.41
4440 9693 6.322712 TGGGCTAGTATGTTGAAAAACTTTGT 59.677 34.615 0.00 0.00 0.00 2.83
4451 9704 4.356405 TCATCCATGGGCTAGTATGTTG 57.644 45.455 13.02 0.00 0.00 3.33
4544 9930 7.921745 AGCTAGTAAGATTTTCCGAAGTGATAC 59.078 37.037 0.00 0.00 0.00 2.24
4546 9932 6.758886 CAGCTAGTAAGATTTTCCGAAGTGAT 59.241 38.462 0.00 0.00 0.00 3.06
4548 9934 5.220491 GCAGCTAGTAAGATTTTCCGAAGTG 60.220 44.000 0.00 0.00 0.00 3.16
4551 9937 4.630069 GTGCAGCTAGTAAGATTTTCCGAA 59.370 41.667 0.00 0.00 0.00 4.30
4552 9938 4.181578 GTGCAGCTAGTAAGATTTTCCGA 58.818 43.478 0.00 0.00 0.00 4.55
4553 9939 3.932710 TGTGCAGCTAGTAAGATTTTCCG 59.067 43.478 0.00 0.00 0.00 4.30
4556 9942 7.693969 AAGAATGTGCAGCTAGTAAGATTTT 57.306 32.000 0.00 0.00 0.00 1.82
4557 9943 7.011857 GCTAAGAATGTGCAGCTAGTAAGATTT 59.988 37.037 0.00 0.00 0.00 2.17
4560 9946 5.105351 TGCTAAGAATGTGCAGCTAGTAAGA 60.105 40.000 0.00 0.00 35.05 2.10
4561 9947 5.006165 GTGCTAAGAATGTGCAGCTAGTAAG 59.994 44.000 0.00 0.00 37.39 2.34
4564 9950 3.265791 GTGCTAAGAATGTGCAGCTAGT 58.734 45.455 0.00 0.00 37.39 2.57
4565 9951 3.940657 GTGCTAAGAATGTGCAGCTAG 57.059 47.619 0.00 0.00 37.39 3.42
4569 9955 2.012673 GGAGGTGCTAAGAATGTGCAG 58.987 52.381 0.00 0.00 37.39 4.41
4570 9956 1.350684 TGGAGGTGCTAAGAATGTGCA 59.649 47.619 0.00 0.00 0.00 4.57
4571 9957 2.113860 TGGAGGTGCTAAGAATGTGC 57.886 50.000 0.00 0.00 0.00 4.57
4572 9958 4.334759 CAGAATGGAGGTGCTAAGAATGTG 59.665 45.833 0.00 0.00 0.00 3.21
4573 9959 4.521146 CAGAATGGAGGTGCTAAGAATGT 58.479 43.478 0.00 0.00 0.00 2.71
4576 9965 2.573462 AGCAGAATGGAGGTGCTAAGAA 59.427 45.455 0.00 0.00 45.72 2.52
4578 9967 2.706339 AGCAGAATGGAGGTGCTAAG 57.294 50.000 0.00 0.00 45.72 2.18
4660 10050 9.138596 GGAGTATTTAGGAACAGAGAGAGTATT 57.861 37.037 0.00 0.00 0.00 1.89
4661 10051 7.726738 GGGAGTATTTAGGAACAGAGAGAGTAT 59.273 40.741 0.00 0.00 0.00 2.12
4663 10053 5.894964 GGGAGTATTTAGGAACAGAGAGAGT 59.105 44.000 0.00 0.00 0.00 3.24
4665 10055 6.093617 AGGGAGTATTTAGGAACAGAGAGA 57.906 41.667 0.00 0.00 0.00 3.10
4666 10056 5.303333 GGAGGGAGTATTTAGGAACAGAGAG 59.697 48.000 0.00 0.00 0.00 3.20
4668 10058 5.212745 AGGAGGGAGTATTTAGGAACAGAG 58.787 45.833 0.00 0.00 0.00 3.35
4670 10060 5.163290 GGAAGGAGGGAGTATTTAGGAACAG 60.163 48.000 0.00 0.00 0.00 3.16
4671 10061 4.720273 GGAAGGAGGGAGTATTTAGGAACA 59.280 45.833 0.00 0.00 0.00 3.18
4672 10062 4.102838 GGGAAGGAGGGAGTATTTAGGAAC 59.897 50.000 0.00 0.00 0.00 3.62
4674 10064 3.276578 TGGGAAGGAGGGAGTATTTAGGA 59.723 47.826 0.00 0.00 0.00 2.94
4675 10065 3.665443 TGGGAAGGAGGGAGTATTTAGG 58.335 50.000 0.00 0.00 0.00 2.69
4676 10066 5.710409 TTTGGGAAGGAGGGAGTATTTAG 57.290 43.478 0.00 0.00 0.00 1.85
4679 10069 6.219772 ACTTATTTTGGGAAGGAGGGAGTATT 59.780 38.462 0.00 0.00 0.00 1.89
4680 10070 5.736616 ACTTATTTTGGGAAGGAGGGAGTAT 59.263 40.000 0.00 0.00 0.00 2.12
4681 10071 5.045140 CACTTATTTTGGGAAGGAGGGAGTA 60.045 44.000 0.00 0.00 0.00 2.59
4682 10072 3.923425 ACTTATTTTGGGAAGGAGGGAGT 59.077 43.478 0.00 0.00 0.00 3.85
4683 10073 4.273318 CACTTATTTTGGGAAGGAGGGAG 58.727 47.826 0.00 0.00 0.00 4.30
4684 10074 3.563479 GCACTTATTTTGGGAAGGAGGGA 60.563 47.826 0.00 0.00 0.00 4.20
4685 10075 2.760650 GCACTTATTTTGGGAAGGAGGG 59.239 50.000 0.00 0.00 0.00 4.30
4686 10076 2.760650 GGCACTTATTTTGGGAAGGAGG 59.239 50.000 0.00 0.00 0.00 4.30
4687 10077 3.701664 AGGCACTTATTTTGGGAAGGAG 58.298 45.455 0.00 0.00 27.25 3.69
4688 10078 3.825908 AGGCACTTATTTTGGGAAGGA 57.174 42.857 0.00 0.00 27.25 3.36
4739 10246 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
4740 10247 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
4741 10248 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
4742 10249 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
4743 10250 7.193595 CGTTCCAAAATAAGTGTCTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
4744 10251 6.238648 CCGTTCCAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
4746 10253 5.237779 TCCGTTCCAAAATAAGTGTCTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
4748 10255 4.963373 TCCGTTCCAAAATAAGTGTCTCA 58.037 39.130 0.00 0.00 0.00 3.27
4749 10256 4.392138 CCTCCGTTCCAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
4750 10257 4.324267 CCTCCGTTCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
4753 10260 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
4754 10261 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
4755 10262 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
4758 10265 5.368523 TCATATACTCCCTCCGTTCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
4759 10266 4.717778 TCATATACTCCCTCCGTTCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
4761 10268 3.640029 GTCATATACTCCCTCCGTTCCAA 59.360 47.826 0.00 0.00 0.00 3.53
4768 10275 5.091552 TGGGTAATGTCATATACTCCCTCC 58.908 45.833 0.00 0.00 35.20 4.30
4769 10276 6.681729 TTGGGTAATGTCATATACTCCCTC 57.318 41.667 0.00 0.00 35.20 4.30
4771 10278 5.699458 CGTTTGGGTAATGTCATATACTCCC 59.301 44.000 0.00 0.00 34.77 4.30
4772 10279 6.285990 ACGTTTGGGTAATGTCATATACTCC 58.714 40.000 0.00 0.00 29.94 3.85
4782 10289 7.936584 CCAAATATATGACGTTTGGGTAATGT 58.063 34.615 5.22 0.00 45.05 2.71
4800 10307 8.936787 TCTGCCATTTCATTAATTCCCAAATAT 58.063 29.630 0.00 0.00 0.00 1.28
4801 10308 8.316497 TCTGCCATTTCATTAATTCCCAAATA 57.684 30.769 0.00 0.00 0.00 1.40
4802 10309 7.197901 TCTGCCATTTCATTAATTCCCAAAT 57.802 32.000 0.00 0.00 0.00 2.32
4803 10310 6.617782 TCTGCCATTTCATTAATTCCCAAA 57.382 33.333 0.00 0.00 0.00 3.28
4804 10311 6.617782 TTCTGCCATTTCATTAATTCCCAA 57.382 33.333 0.00 0.00 0.00 4.12
4805 10312 6.617782 TTTCTGCCATTTCATTAATTCCCA 57.382 33.333 0.00 0.00 0.00 4.37
4806 10313 6.037500 GCTTTTCTGCCATTTCATTAATTCCC 59.962 38.462 0.00 0.00 0.00 3.97
4807 10314 6.594937 TGCTTTTCTGCCATTTCATTAATTCC 59.405 34.615 0.00 0.00 0.00 3.01
4808 10315 7.599630 TGCTTTTCTGCCATTTCATTAATTC 57.400 32.000 0.00 0.00 0.00 2.17
4810 10317 7.982761 TTTGCTTTTCTGCCATTTCATTAAT 57.017 28.000 0.00 0.00 0.00 1.40
4817 10324 4.067192 GGACATTTGCTTTTCTGCCATTT 58.933 39.130 0.00 0.00 0.00 2.32
4879 10386 3.435671 GCACCGAATAAACAGTTGTAGCT 59.564 43.478 0.00 0.00 0.00 3.32
4954 10467 3.751175 CAGATGGGCGTTCACTTTTTCTA 59.249 43.478 0.00 0.00 0.00 2.10
4971 10489 0.319040 CCGACGCATAGGACCAGATG 60.319 60.000 0.00 0.00 0.00 2.90
5000 10525 4.434938 TCGCCGAGTCGACGTTCG 62.435 66.667 20.48 17.53 42.10 3.95
5190 10715 2.264480 CGCACCATCGTCTTCCCA 59.736 61.111 0.00 0.00 0.00 4.37
5295 10820 4.983628 GCGATGGAGCTGATCGAT 57.016 55.556 22.84 0.00 44.46 3.59
5343 10872 0.694771 TTCACTGAGCAAGCTCCCAT 59.305 50.000 18.54 2.16 42.09 4.00
5372 10901 4.773674 TCAAATTCAGTGCCTCCATGATTT 59.226 37.500 0.00 0.00 0.00 2.17
5386 10915 5.461078 CCAGAAAGCTGTTGTTCAAATTCAG 59.539 40.000 0.00 0.00 40.63 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.