Multiple sequence alignment - TraesCS5D01G503400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G503400 chr5D 100.000 3245 0 0 1 3245 530365915 530362671 0.000000e+00 5993.0
1 TraesCS5D01G503400 chr5B 91.768 1968 105 29 688 2633 669452471 669450539 0.000000e+00 2684.0
2 TraesCS5D01G503400 chr5B 90.580 552 32 9 2689 3239 669450357 669449825 0.000000e+00 713.0
3 TraesCS5D01G503400 chr5A 89.282 2006 113 54 424 2393 658563052 658561113 0.000000e+00 2420.0
4 TraesCS5D01G503400 chr5A 95.200 125 5 1 2462 2585 658561118 658560994 2.550000e-46 196.0
5 TraesCS5D01G503400 chr3D 87.302 252 27 3 7 254 590752001 590751751 1.910000e-72 283.0
6 TraesCS5D01G503400 chr3D 86.614 254 28 4 1 250 525655635 525655886 3.190000e-70 276.0
7 TraesCS5D01G503400 chr3D 85.938 256 26 5 1 252 525642838 525643087 6.900000e-67 265.0
8 TraesCS5D01G503400 chr2A 87.815 238 27 2 15 251 729555009 729555245 8.870000e-71 278.0
9 TraesCS5D01G503400 chr2A 86.614 254 27 6 1 249 653037638 653037387 1.150000e-69 274.0
10 TraesCS5D01G503400 chr7B 87.660 235 28 1 15 249 453931840 453932073 4.130000e-69 272.0
11 TraesCS5D01G503400 chr1B 85.714 259 31 4 1 254 682021613 682021356 5.340000e-68 268.0
12 TraesCS5D01G503400 chr4D 87.029 239 28 2 15 252 108913542 108913778 1.920000e-67 267.0
13 TraesCS5D01G503400 chr4A 85.547 256 32 4 1 252 572708668 572708414 2.480000e-66 263.0
14 TraesCS5D01G503400 chr4B 80.435 138 18 8 1187 1324 593393177 593393049 2.660000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G503400 chr5D 530362671 530365915 3244 True 5993.0 5993 100.000 1 3245 1 chr5D.!!$R1 3244
1 TraesCS5D01G503400 chr5B 669449825 669452471 2646 True 1698.5 2684 91.174 688 3239 2 chr5B.!!$R1 2551
2 TraesCS5D01G503400 chr5A 658560994 658563052 2058 True 1308.0 2420 92.241 424 2585 2 chr5A.!!$R1 2161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.025513 CATTAGCGCTTGCGTCTGTC 59.974 55.0 18.68 0.0 45.69 3.51 F
268 269 0.031616 AAAAGGCCAACCCCAACTCA 60.032 50.0 5.01 0.0 36.11 3.41 F
270 271 0.190815 AAGGCCAACCCCAACTCAAT 59.809 50.0 5.01 0.0 36.11 2.57 F
864 885 0.250338 CCCGGCCTATAAGAACCTGC 60.250 60.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 1746 0.037139 AGCAGAGCAGAAGCAGAGTG 60.037 55.0 0.0 0.0 45.49 3.51 R
2224 2286 0.320421 CACTCGTAGGTGGGTGTTGG 60.320 60.0 0.0 0.0 33.95 3.77 R
2225 2287 0.677288 TCACTCGTAGGTGGGTGTTG 59.323 55.0 0.0 0.0 37.75 3.33 R
2788 2989 0.257039 AACTCATCACCATCCAGGCC 59.743 55.0 0.0 0.0 43.14 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.732289 ACCATGGTTCAAGTGGTGC 58.268 52.632 13.00 0.00 44.21 5.01
20 21 0.185901 ACCATGGTTCAAGTGGTGCT 59.814 50.000 13.00 0.00 44.21 4.40
21 22 1.331214 CCATGGTTCAAGTGGTGCTT 58.669 50.000 2.57 0.00 38.08 3.91
35 36 7.759489 AAGTGGTGCTTGTATTATTTCTGAA 57.241 32.000 0.00 0.00 35.80 3.02
36 37 7.944729 AGTGGTGCTTGTATTATTTCTGAAT 57.055 32.000 0.00 0.00 0.00 2.57
37 38 8.353423 AGTGGTGCTTGTATTATTTCTGAATT 57.647 30.769 0.00 0.00 0.00 2.17
38 39 8.806146 AGTGGTGCTTGTATTATTTCTGAATTT 58.194 29.630 0.00 0.00 0.00 1.82
55 56 8.931385 TCTGAATTTATTTTAGCATTTCCAGC 57.069 30.769 0.00 0.00 0.00 4.85
56 57 7.701924 TCTGAATTTATTTTAGCATTTCCAGCG 59.298 33.333 0.00 0.00 37.01 5.18
57 58 7.542890 TGAATTTATTTTAGCATTTCCAGCGA 58.457 30.769 0.00 0.00 37.01 4.93
58 59 8.196771 TGAATTTATTTTAGCATTTCCAGCGAT 58.803 29.630 0.00 0.00 37.01 4.58
59 60 7.935338 ATTTATTTTAGCATTTCCAGCGATG 57.065 32.000 0.00 0.00 37.01 3.84
60 61 2.849880 TTTAGCATTTCCAGCGATGC 57.150 45.000 0.00 0.00 46.88 3.91
72 73 3.228624 CGATGCGCCTTCGATGAG 58.771 61.111 21.17 0.00 38.88 2.90
73 74 1.299392 CGATGCGCCTTCGATGAGA 60.299 57.895 21.17 0.00 38.88 3.27
74 75 1.274126 CGATGCGCCTTCGATGAGAG 61.274 60.000 21.17 0.00 38.88 3.20
75 76 0.943359 GATGCGCCTTCGATGAGAGG 60.943 60.000 4.18 0.00 38.10 3.69
76 77 1.395045 ATGCGCCTTCGATGAGAGGA 61.395 55.000 4.18 0.00 38.10 3.71
77 78 1.299773 GCGCCTTCGATGAGAGGAG 60.300 63.158 5.02 2.74 38.10 3.69
78 79 1.729470 GCGCCTTCGATGAGAGGAGA 61.729 60.000 8.60 0.00 38.10 3.71
79 80 0.030101 CGCCTTCGATGAGAGGAGAC 59.970 60.000 5.02 0.00 38.10 3.36
80 81 0.030101 GCCTTCGATGAGAGGAGACG 59.970 60.000 5.02 0.00 0.00 4.18
81 82 1.384525 CCTTCGATGAGAGGAGACGT 58.615 55.000 0.00 0.00 0.00 4.34
82 83 1.746220 CCTTCGATGAGAGGAGACGTT 59.254 52.381 0.00 0.00 0.00 3.99
83 84 2.223386 CCTTCGATGAGAGGAGACGTTC 60.223 54.545 0.00 0.00 0.00 3.95
91 92 4.863984 GGAGACGTTCCTGTCGAC 57.136 61.111 9.11 9.11 43.70 4.20
92 93 1.154263 GGAGACGTTCCTGTCGACG 60.154 63.158 11.62 5.76 43.70 5.12
93 94 1.572085 GGAGACGTTCCTGTCGACGA 61.572 60.000 11.62 0.00 43.70 4.20
94 95 0.452452 GAGACGTTCCTGTCGACGAC 60.452 60.000 20.97 20.97 43.70 4.34
95 96 1.791283 GACGTTCCTGTCGACGACG 60.791 63.158 22.06 22.91 41.53 5.12
96 97 2.162921 GACGTTCCTGTCGACGACGA 62.163 60.000 27.94 11.96 46.56 4.20
106 107 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
108 109 3.950254 CGACGAGGCGCCTACGAT 61.950 66.667 37.37 26.68 43.93 3.73
109 110 2.353607 GACGAGGCGCCTACGATG 60.354 66.667 37.37 24.97 43.93 3.84
110 111 2.827190 ACGAGGCGCCTACGATGA 60.827 61.111 37.37 0.00 43.93 2.92
111 112 2.353607 CGAGGCGCCTACGATGAC 60.354 66.667 32.97 14.51 43.93 3.06
112 113 2.835705 CGAGGCGCCTACGATGACT 61.836 63.158 32.97 3.02 43.93 3.41
113 114 1.437986 GAGGCGCCTACGATGACTT 59.562 57.895 32.97 2.04 43.93 3.01
114 115 0.179108 GAGGCGCCTACGATGACTTT 60.179 55.000 32.97 1.35 43.93 2.66
115 116 0.460284 AGGCGCCTACGATGACTTTG 60.460 55.000 31.86 0.00 43.93 2.77
116 117 0.739813 GGCGCCTACGATGACTTTGT 60.740 55.000 22.15 0.00 43.93 2.83
117 118 1.470285 GGCGCCTACGATGACTTTGTA 60.470 52.381 22.15 0.00 43.93 2.41
118 119 2.264813 GCGCCTACGATGACTTTGTAA 58.735 47.619 0.00 0.00 43.93 2.41
119 120 2.669434 GCGCCTACGATGACTTTGTAAA 59.331 45.455 0.00 0.00 43.93 2.01
120 121 3.308866 GCGCCTACGATGACTTTGTAAAT 59.691 43.478 0.00 0.00 43.93 1.40
121 122 4.550255 GCGCCTACGATGACTTTGTAAATC 60.550 45.833 0.00 0.00 43.93 2.17
122 123 4.804139 CGCCTACGATGACTTTGTAAATCT 59.196 41.667 0.00 0.00 43.93 2.40
123 124 5.051641 CGCCTACGATGACTTTGTAAATCTC 60.052 44.000 0.00 0.00 43.93 2.75
124 125 5.810587 GCCTACGATGACTTTGTAAATCTCA 59.189 40.000 0.00 0.00 0.00 3.27
125 126 6.312918 GCCTACGATGACTTTGTAAATCTCAA 59.687 38.462 0.00 0.00 0.00 3.02
126 127 7.464710 GCCTACGATGACTTTGTAAATCTCAAG 60.465 40.741 0.00 0.00 0.00 3.02
127 128 7.759886 CCTACGATGACTTTGTAAATCTCAAGA 59.240 37.037 0.00 0.00 0.00 3.02
128 129 9.307121 CTACGATGACTTTGTAAATCTCAAGAT 57.693 33.333 0.00 0.00 36.07 2.40
129 130 7.968246 ACGATGACTTTGTAAATCTCAAGATG 58.032 34.615 0.00 0.00 34.49 2.90
130 131 7.819415 ACGATGACTTTGTAAATCTCAAGATGA 59.181 33.333 0.00 0.00 34.49 2.92
131 132 8.113062 CGATGACTTTGTAAATCTCAAGATGAC 58.887 37.037 0.00 0.00 34.49 3.06
132 133 8.853077 ATGACTTTGTAAATCTCAAGATGACA 57.147 30.769 0.00 0.00 34.49 3.58
133 134 8.853077 TGACTTTGTAAATCTCAAGATGACAT 57.147 30.769 8.17 0.00 33.75 3.06
134 135 8.724229 TGACTTTGTAAATCTCAAGATGACATG 58.276 33.333 0.00 0.00 33.75 3.21
135 136 7.533426 ACTTTGTAAATCTCAAGATGACATGC 58.467 34.615 0.00 0.00 33.75 4.06
136 137 6.441093 TTGTAAATCTCAAGATGACATGCC 57.559 37.500 0.00 0.00 33.75 4.40
137 138 4.571984 TGTAAATCTCAAGATGACATGCCG 59.428 41.667 0.00 0.00 34.49 5.69
138 139 2.251409 ATCTCAAGATGACATGCCGG 57.749 50.000 0.00 0.00 32.68 6.13
139 140 0.462581 TCTCAAGATGACATGCCGGC 60.463 55.000 22.73 22.73 0.00 6.13
140 141 0.463295 CTCAAGATGACATGCCGGCT 60.463 55.000 29.70 7.33 0.00 5.52
141 142 0.462581 TCAAGATGACATGCCGGCTC 60.463 55.000 29.70 17.89 0.00 4.70
142 143 0.745486 CAAGATGACATGCCGGCTCA 60.745 55.000 29.70 23.34 0.00 4.26
143 144 0.463295 AAGATGACATGCCGGCTCAG 60.463 55.000 29.70 19.20 0.00 3.35
144 145 1.153289 GATGACATGCCGGCTCAGT 60.153 57.895 29.70 22.43 0.00 3.41
145 146 1.153289 ATGACATGCCGGCTCAGTC 60.153 57.895 29.70 28.59 0.00 3.51
146 147 1.620739 ATGACATGCCGGCTCAGTCT 61.621 55.000 31.39 20.84 0.00 3.24
147 148 1.520342 GACATGCCGGCTCAGTCTC 60.520 63.158 29.70 9.51 0.00 3.36
148 149 1.954362 GACATGCCGGCTCAGTCTCT 61.954 60.000 29.70 0.81 0.00 3.10
149 150 1.227205 CATGCCGGCTCAGTCTCTC 60.227 63.158 29.70 0.00 0.00 3.20
150 151 2.780094 ATGCCGGCTCAGTCTCTCG 61.780 63.158 29.70 0.00 0.00 4.04
151 152 3.134792 GCCGGCTCAGTCTCTCGA 61.135 66.667 22.15 0.00 0.00 4.04
152 153 2.701780 GCCGGCTCAGTCTCTCGAA 61.702 63.158 22.15 0.00 0.00 3.71
153 154 2.010582 GCCGGCTCAGTCTCTCGAAT 62.011 60.000 22.15 0.00 0.00 3.34
154 155 0.248825 CCGGCTCAGTCTCTCGAATG 60.249 60.000 0.00 0.00 36.62 2.67
155 156 0.453793 CGGCTCAGTCTCTCGAATGT 59.546 55.000 0.00 0.00 36.65 2.71
156 157 1.796982 CGGCTCAGTCTCTCGAATGTG 60.797 57.143 0.00 0.00 36.65 3.21
157 158 1.276415 GCTCAGTCTCTCGAATGTGC 58.724 55.000 1.97 1.97 44.03 4.57
158 159 1.135141 GCTCAGTCTCTCGAATGTGCT 60.135 52.381 8.85 0.00 45.70 4.40
159 160 2.673610 GCTCAGTCTCTCGAATGTGCTT 60.674 50.000 8.85 0.00 45.70 3.91
160 161 3.428180 GCTCAGTCTCTCGAATGTGCTTA 60.428 47.826 8.85 0.00 45.70 3.09
161 162 4.736168 GCTCAGTCTCTCGAATGTGCTTAT 60.736 45.833 8.85 0.00 45.70 1.73
162 163 5.506483 GCTCAGTCTCTCGAATGTGCTTATA 60.506 44.000 8.85 0.00 45.70 0.98
163 164 6.066054 TCAGTCTCTCGAATGTGCTTATAG 57.934 41.667 0.00 0.00 36.65 1.31
164 165 5.009110 TCAGTCTCTCGAATGTGCTTATAGG 59.991 44.000 0.00 0.00 36.65 2.57
165 166 4.279671 AGTCTCTCGAATGTGCTTATAGGG 59.720 45.833 0.00 0.00 0.00 3.53
166 167 4.278669 GTCTCTCGAATGTGCTTATAGGGA 59.721 45.833 0.00 0.00 0.00 4.20
167 168 4.278669 TCTCTCGAATGTGCTTATAGGGAC 59.721 45.833 0.00 0.00 0.00 4.46
168 169 3.958147 TCTCGAATGTGCTTATAGGGACA 59.042 43.478 11.52 11.52 41.41 4.02
169 170 4.404394 TCTCGAATGTGCTTATAGGGACAA 59.596 41.667 13.05 0.00 40.62 3.18
170 171 4.693283 TCGAATGTGCTTATAGGGACAAG 58.307 43.478 13.05 8.11 40.62 3.16
171 172 3.809832 CGAATGTGCTTATAGGGACAAGG 59.190 47.826 13.05 2.52 40.62 3.61
172 173 4.683400 CGAATGTGCTTATAGGGACAAGGT 60.683 45.833 13.05 2.35 40.62 3.50
173 174 3.627395 TGTGCTTATAGGGACAAGGTG 57.373 47.619 6.73 0.00 34.77 4.00
174 175 2.910319 TGTGCTTATAGGGACAAGGTGT 59.090 45.455 6.73 0.00 34.77 4.16
175 176 3.270877 GTGCTTATAGGGACAAGGTGTG 58.729 50.000 1.43 0.00 0.00 3.82
176 177 2.289565 GCTTATAGGGACAAGGTGTGC 58.710 52.381 0.00 0.00 38.03 4.57
177 178 2.550978 CTTATAGGGACAAGGTGTGCG 58.449 52.381 0.00 0.00 39.79 5.34
178 179 1.563924 TATAGGGACAAGGTGTGCGT 58.436 50.000 0.93 0.93 39.79 5.24
179 180 0.036388 ATAGGGACAAGGTGTGCGTG 60.036 55.000 5.50 0.00 39.79 5.34
180 181 1.404479 TAGGGACAAGGTGTGCGTGT 61.404 55.000 5.50 0.00 39.79 4.49
181 182 2.542907 GGGACAAGGTGTGCGTGTG 61.543 63.158 0.00 0.00 39.79 3.82
182 183 1.817941 GGACAAGGTGTGCGTGTGT 60.818 57.895 0.00 0.00 0.00 3.72
183 184 1.351707 GACAAGGTGTGCGTGTGTG 59.648 57.895 0.00 0.00 0.00 3.82
184 185 2.024588 CAAGGTGTGCGTGTGTGC 59.975 61.111 0.00 0.00 0.00 4.57
185 186 3.572539 AAGGTGTGCGTGTGTGCG 61.573 61.111 0.00 0.00 37.81 5.34
186 187 4.830765 AGGTGTGCGTGTGTGCGT 62.831 61.111 0.00 0.00 37.81 5.24
187 188 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
188 189 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
189 190 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
190 191 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
191 192 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
192 193 0.442310 GTGCGTGTGTGCGTTCATAT 59.558 50.000 0.00 0.00 37.81 1.78
193 194 0.441921 TGCGTGTGTGCGTTCATATG 59.558 50.000 0.00 0.00 37.81 1.78
194 195 0.718904 GCGTGTGTGCGTTCATATGA 59.281 50.000 0.00 0.00 0.00 2.15
195 196 1.267038 GCGTGTGTGCGTTCATATGAG 60.267 52.381 5.39 0.00 0.00 2.90
196 197 1.992667 CGTGTGTGCGTTCATATGAGT 59.007 47.619 5.39 0.00 0.00 3.41
197 198 2.222574 CGTGTGTGCGTTCATATGAGTG 60.223 50.000 5.39 3.86 0.00 3.51
198 199 2.993220 GTGTGTGCGTTCATATGAGTGA 59.007 45.455 5.39 0.00 0.00 3.41
199 200 3.061295 GTGTGTGCGTTCATATGAGTGAG 59.939 47.826 5.39 0.59 0.00 3.51
200 201 3.254060 GTGTGCGTTCATATGAGTGAGT 58.746 45.455 5.39 0.00 0.00 3.41
201 202 3.061295 GTGTGCGTTCATATGAGTGAGTG 59.939 47.826 5.39 0.00 0.00 3.51
202 203 3.254060 GTGCGTTCATATGAGTGAGTGT 58.746 45.455 5.39 0.00 0.00 3.55
203 204 4.082463 TGTGCGTTCATATGAGTGAGTGTA 60.082 41.667 5.39 0.00 0.00 2.90
204 205 5.043903 GTGCGTTCATATGAGTGAGTGTAT 58.956 41.667 5.39 0.00 0.00 2.29
205 206 5.043248 TGCGTTCATATGAGTGAGTGTATG 58.957 41.667 5.39 0.00 0.00 2.39
206 207 4.084849 GCGTTCATATGAGTGAGTGTATGC 60.085 45.833 5.39 2.13 0.00 3.14
207 208 4.147133 CGTTCATATGAGTGAGTGTATGCG 59.853 45.833 5.39 0.00 0.00 4.73
208 209 3.642705 TCATATGAGTGAGTGTATGCGC 58.357 45.455 0.00 0.00 0.00 6.09
209 210 2.119671 TATGAGTGAGTGTATGCGCG 57.880 50.000 0.00 0.00 0.00 6.86
210 211 0.173481 ATGAGTGAGTGTATGCGCGT 59.827 50.000 8.43 7.55 0.00 6.01
211 212 0.806241 TGAGTGAGTGTATGCGCGTA 59.194 50.000 8.43 4.92 0.00 4.42
212 213 1.404035 TGAGTGAGTGTATGCGCGTAT 59.596 47.619 15.52 15.52 0.00 3.06
213 214 1.781429 GAGTGAGTGTATGCGCGTATG 59.219 52.381 20.45 0.00 0.00 2.39
214 215 0.229753 GTGAGTGTATGCGCGTATGC 59.770 55.000 20.45 18.97 37.91 3.14
223 224 3.234390 CGCGTATGCATTAGCGCT 58.766 55.556 26.98 17.26 46.56 5.92
224 225 1.564622 CGCGTATGCATTAGCGCTT 59.435 52.632 26.98 0.00 46.56 4.68
225 226 0.719194 CGCGTATGCATTAGCGCTTG 60.719 55.000 26.98 10.60 46.56 4.01
226 227 0.993746 GCGTATGCATTAGCGCTTGC 60.994 55.000 23.90 23.90 46.23 4.01
227 228 0.719194 CGTATGCATTAGCGCTTGCG 60.719 55.000 24.64 13.96 46.23 4.85
228 229 0.304705 GTATGCATTAGCGCTTGCGT 59.695 50.000 26.84 26.84 46.23 5.24
229 230 0.581529 TATGCATTAGCGCTTGCGTC 59.418 50.000 27.32 10.09 46.23 5.19
230 231 1.091771 ATGCATTAGCGCTTGCGTCT 61.092 50.000 24.64 12.20 46.23 4.18
231 232 1.297158 GCATTAGCGCTTGCGTCTG 60.297 57.895 18.68 5.72 45.69 3.51
232 233 1.970917 GCATTAGCGCTTGCGTCTGT 61.971 55.000 18.68 0.00 45.69 3.41
233 234 0.025513 CATTAGCGCTTGCGTCTGTC 59.974 55.000 18.68 0.00 45.69 3.51
234 235 1.084370 ATTAGCGCTTGCGTCTGTCC 61.084 55.000 18.68 0.00 45.69 4.02
235 236 2.154798 TTAGCGCTTGCGTCTGTCCT 62.155 55.000 18.68 6.37 45.69 3.85
236 237 1.310216 TAGCGCTTGCGTCTGTCCTA 61.310 55.000 18.68 5.44 45.69 2.94
237 238 1.519455 GCGCTTGCGTCTGTCCTAT 60.519 57.895 16.38 0.00 0.00 2.57
238 239 1.756375 GCGCTTGCGTCTGTCCTATG 61.756 60.000 16.38 0.00 0.00 2.23
239 240 0.458543 CGCTTGCGTCTGTCCTATGT 60.459 55.000 6.86 0.00 0.00 2.29
240 241 1.726853 GCTTGCGTCTGTCCTATGTT 58.273 50.000 0.00 0.00 0.00 2.71
241 242 2.734175 CGCTTGCGTCTGTCCTATGTTA 60.734 50.000 6.86 0.00 0.00 2.41
242 243 3.259064 GCTTGCGTCTGTCCTATGTTAA 58.741 45.455 0.00 0.00 0.00 2.01
243 244 3.682858 GCTTGCGTCTGTCCTATGTTAAA 59.317 43.478 0.00 0.00 0.00 1.52
244 245 4.332819 GCTTGCGTCTGTCCTATGTTAAAT 59.667 41.667 0.00 0.00 0.00 1.40
245 246 5.522460 GCTTGCGTCTGTCCTATGTTAAATA 59.478 40.000 0.00 0.00 0.00 1.40
246 247 6.036735 GCTTGCGTCTGTCCTATGTTAAATAA 59.963 38.462 0.00 0.00 0.00 1.40
247 248 7.413657 GCTTGCGTCTGTCCTATGTTAAATAAA 60.414 37.037 0.00 0.00 0.00 1.40
248 249 7.908827 TGCGTCTGTCCTATGTTAAATAAAA 57.091 32.000 0.00 0.00 0.00 1.52
249 250 8.325421 TGCGTCTGTCCTATGTTAAATAAAAA 57.675 30.769 0.00 0.00 0.00 1.94
266 267 3.333009 AAAAAGGCCAACCCCAACT 57.667 47.368 5.01 0.00 36.11 3.16
267 268 1.128200 AAAAAGGCCAACCCCAACTC 58.872 50.000 5.01 0.00 36.11 3.01
268 269 0.031616 AAAAGGCCAACCCCAACTCA 60.032 50.000 5.01 0.00 36.11 3.41
269 270 0.031616 AAAGGCCAACCCCAACTCAA 60.032 50.000 5.01 0.00 36.11 3.02
270 271 0.190815 AAGGCCAACCCCAACTCAAT 59.809 50.000 5.01 0.00 36.11 2.57
271 272 0.542702 AGGCCAACCCCAACTCAATG 60.543 55.000 5.01 0.00 36.11 2.82
272 273 0.541764 GGCCAACCCCAACTCAATGA 60.542 55.000 0.00 0.00 0.00 2.57
273 274 1.560505 GCCAACCCCAACTCAATGAT 58.439 50.000 0.00 0.00 0.00 2.45
274 275 1.205417 GCCAACCCCAACTCAATGATG 59.795 52.381 0.00 0.00 0.00 3.07
275 276 2.528564 CCAACCCCAACTCAATGATGT 58.471 47.619 0.00 0.00 0.00 3.06
276 277 2.493278 CCAACCCCAACTCAATGATGTC 59.507 50.000 0.00 0.00 0.00 3.06
277 278 3.156293 CAACCCCAACTCAATGATGTCA 58.844 45.455 0.00 0.00 0.00 3.58
278 279 3.077484 ACCCCAACTCAATGATGTCAG 57.923 47.619 0.00 0.00 0.00 3.51
279 280 2.644299 ACCCCAACTCAATGATGTCAGA 59.356 45.455 0.00 0.00 0.00 3.27
280 281 3.276857 CCCCAACTCAATGATGTCAGAG 58.723 50.000 0.00 0.00 0.00 3.35
281 282 3.307975 CCCCAACTCAATGATGTCAGAGT 60.308 47.826 0.00 0.00 42.72 3.24
283 284 4.763793 CCCAACTCAATGATGTCAGAGTTT 59.236 41.667 12.36 0.91 46.02 2.66
284 285 5.242393 CCCAACTCAATGATGTCAGAGTTTT 59.758 40.000 12.36 0.00 46.02 2.43
285 286 6.239120 CCCAACTCAATGATGTCAGAGTTTTT 60.239 38.462 12.36 0.00 46.02 1.94
303 304 3.641437 TTTTTGGAAGGCTCAATGACG 57.359 42.857 0.00 0.00 0.00 4.35
304 305 2.270352 TTTGGAAGGCTCAATGACGT 57.730 45.000 0.00 0.00 0.00 4.34
305 306 1.808411 TTGGAAGGCTCAATGACGTC 58.192 50.000 9.11 9.11 0.00 4.34
306 307 0.684535 TGGAAGGCTCAATGACGTCA 59.315 50.000 22.48 22.48 33.67 4.35
307 308 1.338105 TGGAAGGCTCAATGACGTCAG 60.338 52.381 24.41 11.43 33.67 3.51
308 309 1.066858 GGAAGGCTCAATGACGTCAGA 60.067 52.381 24.41 15.20 33.67 3.27
309 310 2.266554 GAAGGCTCAATGACGTCAGAG 58.733 52.381 24.41 23.92 32.23 3.35
310 311 1.261480 AGGCTCAATGACGTCAGAGT 58.739 50.000 26.45 13.21 0.00 3.24
311 312 1.620819 AGGCTCAATGACGTCAGAGTT 59.379 47.619 26.45 14.79 0.00 3.01
312 313 1.728971 GGCTCAATGACGTCAGAGTTG 59.271 52.381 26.45 23.24 0.00 3.16
313 314 2.408050 GCTCAATGACGTCAGAGTTGT 58.592 47.619 26.45 8.64 0.00 3.32
314 315 2.156504 GCTCAATGACGTCAGAGTTGTG 59.843 50.000 26.45 23.27 0.00 3.33
315 316 2.135139 TCAATGACGTCAGAGTTGTGC 58.865 47.619 24.41 0.00 0.00 4.57
316 317 1.136529 CAATGACGTCAGAGTTGTGCG 60.137 52.381 24.41 0.00 0.00 5.34
317 318 1.284982 ATGACGTCAGAGTTGTGCGC 61.285 55.000 24.41 0.00 0.00 6.09
318 319 2.658707 GACGTCAGAGTTGTGCGCC 61.659 63.158 11.55 0.00 0.00 6.53
319 320 3.767230 CGTCAGAGTTGTGCGCCG 61.767 66.667 4.18 0.00 0.00 6.46
320 321 4.077188 GTCAGAGTTGTGCGCCGC 62.077 66.667 4.18 0.00 0.00 6.53
321 322 4.600576 TCAGAGTTGTGCGCCGCA 62.601 61.111 8.16 8.16 35.60 5.69
322 323 3.425713 CAGAGTTGTGCGCCGCAT 61.426 61.111 17.54 0.00 41.91 4.73
323 324 3.121030 AGAGTTGTGCGCCGCATC 61.121 61.111 17.54 8.94 41.91 3.91
324 325 3.422303 GAGTTGTGCGCCGCATCA 61.422 61.111 17.54 12.76 41.91 3.07
325 326 3.651480 GAGTTGTGCGCCGCATCAC 62.651 63.158 17.54 15.29 41.91 3.06
326 327 4.759096 GTTGTGCGCCGCATCACC 62.759 66.667 17.54 2.02 41.91 4.02
334 335 3.550431 CCGCATCACCGATCCCCT 61.550 66.667 0.00 0.00 0.00 4.79
335 336 2.280389 CGCATCACCGATCCCCTG 60.280 66.667 0.00 0.00 0.00 4.45
336 337 2.592861 GCATCACCGATCCCCTGC 60.593 66.667 0.00 0.00 0.00 4.85
337 338 3.112205 GCATCACCGATCCCCTGCT 62.112 63.158 0.00 0.00 0.00 4.24
338 339 1.758440 GCATCACCGATCCCCTGCTA 61.758 60.000 0.00 0.00 0.00 3.49
339 340 0.979665 CATCACCGATCCCCTGCTAT 59.020 55.000 0.00 0.00 0.00 2.97
340 341 1.066573 CATCACCGATCCCCTGCTATC 60.067 57.143 0.00 0.00 0.00 2.08
341 342 0.832135 TCACCGATCCCCTGCTATCC 60.832 60.000 0.00 0.00 0.00 2.59
342 343 1.908793 ACCGATCCCCTGCTATCCG 60.909 63.158 0.00 0.00 0.00 4.18
343 344 1.908793 CCGATCCCCTGCTATCCGT 60.909 63.158 0.00 0.00 0.00 4.69
344 345 1.290324 CGATCCCCTGCTATCCGTG 59.710 63.158 0.00 0.00 0.00 4.94
345 346 1.004440 GATCCCCTGCTATCCGTGC 60.004 63.158 0.00 0.00 0.00 5.34
346 347 2.771763 GATCCCCTGCTATCCGTGCG 62.772 65.000 0.00 0.00 0.00 5.34
349 350 4.873129 CCTGCTATCCGTGCGCGT 62.873 66.667 19.61 3.14 36.15 6.01
350 351 3.620428 CTGCTATCCGTGCGCGTG 61.620 66.667 19.61 10.27 36.15 5.34
351 352 4.429212 TGCTATCCGTGCGCGTGT 62.429 61.111 19.61 9.05 36.15 4.49
352 353 3.617538 GCTATCCGTGCGCGTGTC 61.618 66.667 19.61 0.00 36.15 3.67
353 354 3.312504 CTATCCGTGCGCGTGTCG 61.313 66.667 19.61 10.27 42.12 4.35
354 355 4.105733 TATCCGTGCGCGTGTCGT 62.106 61.111 19.61 2.03 41.07 4.34
385 386 6.825944 AAGGAAAAGAAAATCTCTAGCACC 57.174 37.500 0.00 0.00 32.46 5.01
386 387 5.257262 AGGAAAAGAAAATCTCTAGCACCC 58.743 41.667 0.00 0.00 32.46 4.61
387 388 5.010282 GGAAAAGAAAATCTCTAGCACCCA 58.990 41.667 0.00 0.00 32.46 4.51
388 389 5.106118 GGAAAAGAAAATCTCTAGCACCCAC 60.106 44.000 0.00 0.00 32.46 4.61
389 390 3.636153 AGAAAATCTCTAGCACCCACC 57.364 47.619 0.00 0.00 30.22 4.61
390 391 2.239907 AGAAAATCTCTAGCACCCACCC 59.760 50.000 0.00 0.00 30.22 4.61
391 392 0.541863 AAATCTCTAGCACCCACCCG 59.458 55.000 0.00 0.00 0.00 5.28
392 393 1.972660 AATCTCTAGCACCCACCCGC 61.973 60.000 0.00 0.00 0.00 6.13
393 394 4.514577 CTCTAGCACCCACCCGCG 62.515 72.222 0.00 0.00 0.00 6.46
406 407 4.680237 CCGCGGCTGTCACCAAGA 62.680 66.667 14.67 0.00 0.00 3.02
407 408 3.114616 CGCGGCTGTCACCAAGAG 61.115 66.667 0.00 0.00 0.00 2.85
408 409 3.426568 GCGGCTGTCACCAAGAGC 61.427 66.667 0.00 0.00 43.46 4.09
409 410 3.114616 CGGCTGTCACCAAGAGCG 61.115 66.667 0.00 0.00 45.11 5.03
410 411 2.743928 GGCTGTCACCAAGAGCGG 60.744 66.667 0.00 0.00 45.11 5.52
411 412 3.426568 GCTGTCACCAAGAGCGGC 61.427 66.667 0.00 0.00 34.17 6.53
412 413 2.345244 CTGTCACCAAGAGCGGCT 59.655 61.111 0.00 0.00 0.00 5.52
413 414 1.739562 CTGTCACCAAGAGCGGCTC 60.740 63.158 22.13 22.13 0.00 4.70
414 415 2.811317 GTCACCAAGAGCGGCTCG 60.811 66.667 23.15 12.48 35.36 5.03
442 443 1.226974 CGCTGTCGACACATAGGGG 60.227 63.158 15.76 9.27 38.10 4.79
575 587 2.125065 CTCCAGCCAGCTCAGCAG 60.125 66.667 0.00 0.00 0.00 4.24
585 597 2.894565 GCTCAGCAGCGGCATGATC 61.895 63.158 12.44 4.22 44.61 2.92
586 598 1.227586 CTCAGCAGCGGCATGATCT 60.228 57.895 12.44 0.00 44.61 2.75
587 599 1.222766 CTCAGCAGCGGCATGATCTC 61.223 60.000 12.44 0.00 44.61 2.75
588 600 1.523032 CAGCAGCGGCATGATCTCA 60.523 57.895 12.44 0.00 44.61 3.27
589 601 1.227586 AGCAGCGGCATGATCTCAG 60.228 57.895 12.44 0.00 44.61 3.35
590 602 2.894565 GCAGCGGCATGATCTCAGC 61.895 63.158 3.18 0.00 40.72 4.26
591 603 2.279985 AGCGGCATGATCTCAGCG 60.280 61.111 1.45 0.00 0.00 5.18
592 604 4.010414 GCGGCATGATCTCAGCGC 62.010 66.667 0.00 0.00 0.00 5.92
593 605 2.586914 CGGCATGATCTCAGCGCA 60.587 61.111 11.47 0.00 31.92 6.09
594 606 2.879070 CGGCATGATCTCAGCGCAC 61.879 63.158 11.47 0.00 31.92 5.34
595 607 1.816679 GGCATGATCTCAGCGCACA 60.817 57.895 11.47 0.00 31.92 4.57
596 608 1.351012 GCATGATCTCAGCGCACAC 59.649 57.895 11.47 0.00 0.00 3.82
597 609 2.012237 CATGATCTCAGCGCACACC 58.988 57.895 11.47 0.00 0.00 4.16
598 610 0.461516 CATGATCTCAGCGCACACCT 60.462 55.000 11.47 0.00 0.00 4.00
599 611 0.461516 ATGATCTCAGCGCACACCTG 60.462 55.000 11.47 0.00 0.00 4.00
600 612 1.079543 GATCTCAGCGCACACCTGT 60.080 57.895 11.47 0.00 0.00 4.00
601 613 1.079543 ATCTCAGCGCACACCTGTC 60.080 57.895 11.47 0.00 0.00 3.51
602 614 2.825726 ATCTCAGCGCACACCTGTCG 62.826 60.000 11.47 0.00 0.00 4.35
603 615 3.848347 CTCAGCGCACACCTGTCGT 62.848 63.158 11.47 0.00 0.00 4.34
611 623 3.736483 CACCTGTCGTGCTTTGCT 58.264 55.556 0.00 0.00 35.18 3.91
612 624 1.571460 CACCTGTCGTGCTTTGCTC 59.429 57.895 0.00 0.00 35.18 4.26
613 625 0.882042 CACCTGTCGTGCTTTGCTCT 60.882 55.000 0.00 0.00 35.18 4.09
614 626 0.679505 ACCTGTCGTGCTTTGCTCTA 59.320 50.000 0.00 0.00 0.00 2.43
615 627 1.276421 ACCTGTCGTGCTTTGCTCTAT 59.724 47.619 0.00 0.00 0.00 1.98
616 628 1.929836 CCTGTCGTGCTTTGCTCTATC 59.070 52.381 0.00 0.00 0.00 2.08
617 629 1.929836 CTGTCGTGCTTTGCTCTATCC 59.070 52.381 0.00 0.00 0.00 2.59
618 630 1.275010 TGTCGTGCTTTGCTCTATCCA 59.725 47.619 0.00 0.00 0.00 3.41
631 643 4.063689 GCTCTATCCAATGTCCATGTCAG 58.936 47.826 0.00 0.00 0.00 3.51
646 658 5.539955 TCCATGTCAGGATCGAGATATTTCA 59.460 40.000 0.00 0.00 31.23 2.69
647 659 5.868258 CCATGTCAGGATCGAGATATTTCAG 59.132 44.000 0.00 0.00 0.00 3.02
652 664 5.242615 TCAGGATCGAGATATTTCAGTGAGG 59.757 44.000 0.00 0.00 0.00 3.86
680 692 3.864003 CGTTTCCCTCGGAAGATTCTAAC 59.136 47.826 0.00 0.00 43.06 2.34
681 693 4.381718 CGTTTCCCTCGGAAGATTCTAACT 60.382 45.833 0.00 0.00 43.06 2.24
682 694 4.737855 TTCCCTCGGAAGATTCTAACTG 57.262 45.455 0.00 0.00 36.71 3.16
857 878 2.030562 CACCGCCCGGCCTATAAG 59.969 66.667 6.63 0.00 39.32 1.73
859 880 1.763256 ACCGCCCGGCCTATAAGAA 60.763 57.895 6.63 0.00 39.32 2.52
862 883 1.755393 CGCCCGGCCTATAAGAACCT 61.755 60.000 3.10 0.00 0.00 3.50
864 885 0.250338 CCCGGCCTATAAGAACCTGC 60.250 60.000 0.00 0.00 0.00 4.85
868 889 0.250338 GCCTATAAGAACCTGCCCCG 60.250 60.000 0.00 0.00 0.00 5.73
871 892 0.693092 TATAAGAACCTGCCCCGCCT 60.693 55.000 0.00 0.00 0.00 5.52
872 893 1.984288 ATAAGAACCTGCCCCGCCTC 61.984 60.000 0.00 0.00 0.00 4.70
874 895 4.785453 GAACCTGCCCCGCCTCTG 62.785 72.222 0.00 0.00 0.00 3.35
882 903 3.775654 CCCGCCTCTGTCCACCTC 61.776 72.222 0.00 0.00 0.00 3.85
883 904 2.997315 CCGCCTCTGTCCACCTCA 60.997 66.667 0.00 0.00 0.00 3.86
884 905 2.583441 CCGCCTCTGTCCACCTCAA 61.583 63.158 0.00 0.00 0.00 3.02
887 908 0.603975 GCCTCTGTCCACCTCAACAC 60.604 60.000 0.00 0.00 0.00 3.32
893 914 1.072173 TGTCCACCTCAACACCATCAG 59.928 52.381 0.00 0.00 0.00 2.90
895 916 1.625315 TCCACCTCAACACCATCAGAG 59.375 52.381 0.00 0.00 0.00 3.35
1152 1193 1.182385 CGCAGGTCTCCTATCCCTCC 61.182 65.000 0.00 0.00 29.64 4.30
1650 1703 1.944024 CTCAACCGTAAGCACAAACCA 59.056 47.619 0.00 0.00 0.00 3.67
1660 1722 1.963515 AGCACAAACCAATCCAACCTC 59.036 47.619 0.00 0.00 0.00 3.85
1661 1723 1.000843 GCACAAACCAATCCAACCTCC 59.999 52.381 0.00 0.00 0.00 4.30
1662 1724 1.618343 CACAAACCAATCCAACCTCCC 59.382 52.381 0.00 0.00 0.00 4.30
1663 1725 1.503347 ACAAACCAATCCAACCTCCCT 59.497 47.619 0.00 0.00 0.00 4.20
1664 1726 2.171003 CAAACCAATCCAACCTCCCTC 58.829 52.381 0.00 0.00 0.00 4.30
1665 1727 1.455822 AACCAATCCAACCTCCCTCA 58.544 50.000 0.00 0.00 0.00 3.86
1666 1728 0.698818 ACCAATCCAACCTCCCTCAC 59.301 55.000 0.00 0.00 0.00 3.51
1667 1729 0.392998 CCAATCCAACCTCCCTCACG 60.393 60.000 0.00 0.00 0.00 4.35
1668 1730 0.324943 CAATCCAACCTCCCTCACGT 59.675 55.000 0.00 0.00 0.00 4.49
1669 1731 1.064825 AATCCAACCTCCCTCACGTT 58.935 50.000 0.00 0.00 0.00 3.99
1670 1732 0.613777 ATCCAACCTCCCTCACGTTC 59.386 55.000 0.00 0.00 0.00 3.95
1671 1733 0.471211 TCCAACCTCCCTCACGTTCT 60.471 55.000 0.00 0.00 0.00 3.01
1684 1746 3.242518 TCACGTTCTTCATCACGATGAC 58.757 45.455 9.23 0.00 46.49 3.06
1720 1782 1.838568 GCTCACACCGACCGTTTTCC 61.839 60.000 0.00 0.00 0.00 3.13
1722 1784 1.000060 CTCACACCGACCGTTTTCCTA 60.000 52.381 0.00 0.00 0.00 2.94
1723 1785 1.411977 TCACACCGACCGTTTTCCTAA 59.588 47.619 0.00 0.00 0.00 2.69
1872 1934 2.435741 CGAGCACGTGAAGAAGACC 58.564 57.895 22.23 0.00 34.56 3.85
2253 2315 1.204941 ACCTACGAGTGATTGGCTGAC 59.795 52.381 0.00 0.00 0.00 3.51
2266 2328 4.700365 CTGACTGCCGTCGCGTCA 62.700 66.667 5.77 0.00 43.21 4.35
2267 2329 4.700365 TGACTGCCGTCGCGTCAG 62.700 66.667 5.77 11.91 43.21 3.51
2269 2331 3.318539 GACTGCCGTCGCGTCAGTA 62.319 63.158 19.48 2.34 40.74 2.74
2270 2332 2.102357 CTGCCGTCGCGTCAGTAT 59.898 61.111 5.77 0.00 38.08 2.12
2281 2344 1.299468 GTCAGTATCCGCGGCTCTG 60.299 63.158 23.51 25.32 0.00 3.35
2282 2345 2.659897 CAGTATCCGCGGCTCTGC 60.660 66.667 23.51 11.22 0.00 4.26
2283 2346 2.835431 AGTATCCGCGGCTCTGCT 60.835 61.111 23.51 13.49 0.00 4.24
2402 2468 8.377681 TGTCTATACGCTTTTGTCGAAATTTAG 58.622 33.333 0.00 0.00 0.00 1.85
2406 2472 3.294627 CGCTTTTGTCGAAATTTAGCGTC 59.705 43.478 17.05 5.62 39.47 5.19
2415 2481 6.809689 TGTCGAAATTTAGCGTCATCTTCTTA 59.190 34.615 0.00 0.00 0.00 2.10
2421 2487 6.583912 TTTAGCGTCATCTTCTTAATTCCG 57.416 37.500 0.00 0.00 0.00 4.30
2424 2490 4.567159 AGCGTCATCTTCTTAATTCCGTTC 59.433 41.667 0.00 0.00 0.00 3.95
2501 2567 9.474920 GTTGGACAATGTATTTGAAATTTGAGA 57.525 29.630 7.57 0.00 38.76 3.27
2516 2582 9.677567 TGAAATTTGAGAATGTTTGCTAGTTAC 57.322 29.630 0.00 0.00 0.00 2.50
2554 2627 4.389374 AGGTTTCTAACATGACACCTGTG 58.611 43.478 0.00 0.00 43.23 3.66
2557 2630 5.473504 GGTTTCTAACATGACACCTGTGATT 59.526 40.000 0.00 0.00 34.81 2.57
2558 2631 6.373779 GTTTCTAACATGACACCTGTGATTG 58.626 40.000 0.00 1.50 0.00 2.67
2560 2633 6.053632 TCTAACATGACACCTGTGATTGAT 57.946 37.500 0.00 0.00 0.00 2.57
2562 2635 7.619965 TCTAACATGACACCTGTGATTGATAA 58.380 34.615 0.00 0.00 0.00 1.75
2564 2637 6.932356 ACATGACACCTGTGATTGATAATC 57.068 37.500 0.00 0.00 38.40 1.75
2565 2638 5.824624 ACATGACACCTGTGATTGATAATCC 59.175 40.000 0.00 0.00 37.09 3.01
2566 2639 5.434182 TGACACCTGTGATTGATAATCCA 57.566 39.130 3.94 0.00 37.09 3.41
2567 2640 5.185454 TGACACCTGTGATTGATAATCCAC 58.815 41.667 3.94 0.00 37.09 4.02
2568 2641 5.178096 ACACCTGTGATTGATAATCCACA 57.822 39.130 3.94 0.00 37.09 4.17
2569 2642 5.188434 ACACCTGTGATTGATAATCCACAG 58.812 41.667 12.78 12.78 41.45 3.66
2578 2651 9.764363 GTGATTGATAATCCACAGTACTTATGA 57.236 33.333 5.60 0.00 37.09 2.15
2595 2668 5.536538 ACTTATGACTTGCCGATCTATCTCA 59.463 40.000 0.00 0.00 0.00 3.27
2605 2680 3.007290 CCGATCTATCTCATGGGCTTGAA 59.993 47.826 0.00 0.00 0.00 2.69
2609 2684 5.441718 TCTATCTCATGGGCTTGAAAACT 57.558 39.130 0.00 0.00 0.00 2.66
2612 2687 7.220030 TCTATCTCATGGGCTTGAAAACTATC 58.780 38.462 0.00 0.00 0.00 2.08
2633 2708 4.089105 GGGGGATCACAAAACGCA 57.911 55.556 0.00 0.00 0.00 5.24
2634 2709 1.584495 GGGGGATCACAAAACGCAC 59.416 57.895 0.00 0.00 0.00 5.34
2635 2710 1.584495 GGGGATCACAAAACGCACC 59.416 57.895 0.00 0.00 0.00 5.01
2636 2711 1.584495 GGGATCACAAAACGCACCC 59.416 57.895 0.00 0.00 0.00 4.61
2638 2713 0.039527 GGATCACAAAACGCACCCAC 60.040 55.000 0.00 0.00 0.00 4.61
2640 2715 1.066303 GATCACAAAACGCACCCACAA 59.934 47.619 0.00 0.00 0.00 3.33
2641 2716 0.453793 TCACAAAACGCACCCACAAG 59.546 50.000 0.00 0.00 0.00 3.16
2654 2729 3.264574 CACAAGGGTGGTGGGTATG 57.735 57.895 0.00 0.00 41.45 2.39
2656 2731 0.696501 ACAAGGGTGGTGGGTATGTC 59.303 55.000 0.00 0.00 0.00 3.06
2657 2732 0.991920 CAAGGGTGGTGGGTATGTCT 59.008 55.000 0.00 0.00 0.00 3.41
2659 2734 0.417841 AGGGTGGTGGGTATGTCTCT 59.582 55.000 0.00 0.00 0.00 3.10
2660 2735 1.203440 AGGGTGGTGGGTATGTCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
2661 2736 1.633945 GGGTGGTGGGTATGTCTCTTT 59.366 52.381 0.00 0.00 0.00 2.52
2662 2737 2.841881 GGGTGGTGGGTATGTCTCTTTA 59.158 50.000 0.00 0.00 0.00 1.85
2663 2738 3.370209 GGGTGGTGGGTATGTCTCTTTAC 60.370 52.174 0.00 0.00 0.00 2.01
2664 2739 3.518590 GTGGTGGGTATGTCTCTTTACG 58.481 50.000 0.00 0.00 0.00 3.18
2665 2740 3.056322 GTGGTGGGTATGTCTCTTTACGT 60.056 47.826 0.00 0.00 0.00 3.57
2666 2741 3.056393 TGGTGGGTATGTCTCTTTACGTG 60.056 47.826 0.00 0.00 0.00 4.49
2667 2742 3.056322 GGTGGGTATGTCTCTTTACGTGT 60.056 47.826 0.00 0.00 0.00 4.49
2668 2743 3.924686 GTGGGTATGTCTCTTTACGTGTG 59.075 47.826 0.00 0.00 0.00 3.82
2669 2744 2.928116 GGGTATGTCTCTTTACGTGTGC 59.072 50.000 0.00 0.00 0.00 4.57
2670 2745 3.368116 GGGTATGTCTCTTTACGTGTGCT 60.368 47.826 0.00 0.00 0.00 4.40
2672 2747 2.046283 TGTCTCTTTACGTGTGCTCG 57.954 50.000 0.00 0.00 0.00 5.03
2673 2748 1.335597 TGTCTCTTTACGTGTGCTCGG 60.336 52.381 0.00 0.00 34.94 4.63
2674 2749 0.956633 TCTCTTTACGTGTGCTCGGT 59.043 50.000 0.00 0.00 34.94 4.69
2675 2750 1.060713 CTCTTTACGTGTGCTCGGTG 58.939 55.000 0.00 0.00 34.94 4.94
2676 2751 0.386476 TCTTTACGTGTGCTCGGTGT 59.614 50.000 0.00 0.00 34.94 4.16
2678 2753 0.931702 TTTACGTGTGCTCGGTGTTG 59.068 50.000 0.00 0.00 34.94 3.33
2679 2754 0.876777 TTACGTGTGCTCGGTGTTGG 60.877 55.000 0.00 0.00 34.94 3.77
2680 2755 2.018727 TACGTGTGCTCGGTGTTGGT 62.019 55.000 0.00 0.00 34.94 3.67
2681 2756 2.881266 CGTGTGCTCGGTGTTGGTG 61.881 63.158 0.00 0.00 0.00 4.17
2682 2757 1.522806 GTGTGCTCGGTGTTGGTGA 60.523 57.895 0.00 0.00 0.00 4.02
2683 2758 1.522806 TGTGCTCGGTGTTGGTGAC 60.523 57.895 0.00 0.00 0.00 3.67
2684 2759 2.279851 TGCTCGGTGTTGGTGACG 60.280 61.111 0.00 0.00 0.00 4.35
2754 2955 3.969250 GATCTTCAACGGCGGCCCA 62.969 63.158 14.55 0.00 0.00 5.36
2778 2979 0.615850 GGCTAGGCAACCAGAGAAGT 59.384 55.000 12.16 0.00 37.17 3.01
2787 2988 2.191128 ACCAGAGAAGTTGGTGCATC 57.809 50.000 0.00 0.00 46.85 3.91
2788 2989 1.081892 CCAGAGAAGTTGGTGCATCG 58.918 55.000 0.00 0.00 0.00 3.84
2791 2992 1.648467 GAGAAGTTGGTGCATCGGCC 61.648 60.000 0.00 0.00 40.13 6.13
2792 2993 1.675641 GAAGTTGGTGCATCGGCCT 60.676 57.895 0.00 0.00 40.13 5.19
2793 2994 1.926511 GAAGTTGGTGCATCGGCCTG 61.927 60.000 0.00 0.00 40.13 4.85
2794 2995 3.443045 GTTGGTGCATCGGCCTGG 61.443 66.667 0.00 0.00 40.13 4.45
2795 2996 3.645660 TTGGTGCATCGGCCTGGA 61.646 61.111 0.00 0.00 40.13 3.86
2796 2997 2.982643 TTGGTGCATCGGCCTGGAT 61.983 57.895 0.00 0.00 40.13 3.41
2797 2998 2.903855 GGTGCATCGGCCTGGATG 60.904 66.667 14.45 14.45 45.23 3.51
2798 2999 2.903855 GTGCATCGGCCTGGATGG 60.904 66.667 18.78 4.83 43.19 3.51
2799 3000 3.410628 TGCATCGGCCTGGATGGT 61.411 61.111 18.78 0.00 43.19 3.55
2800 3001 2.903855 GCATCGGCCTGGATGGTG 60.904 66.667 18.78 3.41 43.19 4.17
2801 3002 2.910360 CATCGGCCTGGATGGTGA 59.090 61.111 11.68 0.00 40.07 4.02
2802 3003 1.453235 CATCGGCCTGGATGGTGAT 59.547 57.895 11.68 0.00 40.07 3.06
2803 3004 0.887836 CATCGGCCTGGATGGTGATG 60.888 60.000 11.68 5.81 41.12 3.07
2804 3005 1.056125 ATCGGCCTGGATGGTGATGA 61.056 55.000 0.00 0.00 38.35 2.92
2805 3006 1.227764 CGGCCTGGATGGTGATGAG 60.228 63.158 0.00 0.00 38.35 2.90
2806 3007 1.918253 GGCCTGGATGGTGATGAGT 59.082 57.895 0.00 0.00 38.35 3.41
2810 3011 1.482182 CCTGGATGGTGATGAGTTCGA 59.518 52.381 0.00 0.00 0.00 3.71
2843 3044 3.706855 TGGCGTGTAGAGGCATGA 58.293 55.556 6.89 0.00 39.30 3.07
2877 3078 2.035193 CAGACATAGCGTGTAGAGGCAT 59.965 50.000 7.34 0.00 42.36 4.40
2882 3083 2.903357 CGTGTAGAGGCATGGGCT 59.097 61.111 0.00 0.00 42.48 5.19
2892 3093 0.947244 GGCATGGGCTATTTGTCTCG 59.053 55.000 0.00 0.00 40.87 4.04
2900 3101 5.253330 TGGGCTATTTGTCTCGAATTTTCT 58.747 37.500 0.00 0.00 0.00 2.52
2910 3111 6.899114 TGTCTCGAATTTTCTTTTAAGGAGC 58.101 36.000 0.00 0.00 0.00 4.70
2914 3115 6.909909 TCGAATTTTCTTTTAAGGAGCCTTC 58.090 36.000 4.79 0.00 37.47 3.46
2954 3155 2.697761 GGCTACGACGCTGTCCTGA 61.698 63.158 0.00 0.00 0.00 3.86
2960 3161 0.733150 CGACGCTGTCCTGATGTAGA 59.267 55.000 3.65 0.00 0.00 2.59
2962 3163 2.223595 CGACGCTGTCCTGATGTAGAAT 60.224 50.000 3.65 0.00 0.00 2.40
2963 3164 3.003378 CGACGCTGTCCTGATGTAGAATA 59.997 47.826 3.65 0.00 0.00 1.75
2965 3166 5.533482 GACGCTGTCCTGATGTAGAATAAT 58.467 41.667 0.00 0.00 0.00 1.28
2966 3167 5.292765 ACGCTGTCCTGATGTAGAATAATG 58.707 41.667 0.00 0.00 0.00 1.90
2967 3168 4.151335 CGCTGTCCTGATGTAGAATAATGC 59.849 45.833 0.00 0.00 0.00 3.56
2968 3169 5.303971 GCTGTCCTGATGTAGAATAATGCT 58.696 41.667 0.00 0.00 0.00 3.79
2972 3174 6.767902 TGTCCTGATGTAGAATAATGCTTTCC 59.232 38.462 0.00 0.00 0.00 3.13
2978 3180 7.994911 TGATGTAGAATAATGCTTTCCTCACAT 59.005 33.333 0.00 0.00 0.00 3.21
2988 3190 8.773033 AATGCTTTCCTCACATTATTCCTATT 57.227 30.769 0.00 0.00 32.42 1.73
3010 3212 9.962759 CTATTTTATTGCTGAACTTTTCATTGC 57.037 29.630 0.00 0.00 39.30 3.56
3011 3213 8.611654 ATTTTATTGCTGAACTTTTCATTGCT 57.388 26.923 2.90 0.00 39.30 3.91
3056 3258 4.975631 TCCGACAAGTCTTTTGGGATTAA 58.024 39.130 0.00 0.00 0.00 1.40
3067 3269 7.336176 AGTCTTTTGGGATTAATCGGTTTAGAC 59.664 37.037 19.99 19.99 0.00 2.59
3110 3312 0.250513 GACCGGCTCTCATGGTCTTT 59.749 55.000 0.00 0.00 46.86 2.52
3156 3358 3.284617 AGTGGCCTTTGTTAACGTTCTT 58.715 40.909 2.82 0.00 0.00 2.52
3187 3389 2.417239 GCCGTTGTTTTGATCGGTATCA 59.583 45.455 0.00 0.00 44.07 2.15
3205 3407 1.071471 AACGACTTCCTGGCCACTG 59.929 57.895 0.00 0.00 0.00 3.66
3206 3408 2.743928 CGACTTCCTGGCCACTGC 60.744 66.667 0.00 0.00 0.00 4.40
3207 3409 2.753029 GACTTCCTGGCCACTGCT 59.247 61.111 0.00 0.00 37.74 4.24
3208 3410 1.073897 GACTTCCTGGCCACTGCTT 59.926 57.895 0.00 0.00 37.74 3.91
3219 3421 3.084786 GGCCACTGCTTCTACAATCTTT 58.915 45.455 0.00 0.00 37.74 2.52
3228 3430 5.772672 TGCTTCTACAATCTTTTGGGCTAAA 59.227 36.000 0.00 0.00 37.15 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.331214 AAGCACCACTTGAACCATGG 58.669 50.000 11.19 11.19 37.17 3.66
11 12 7.759489 TTCAGAAATAATACAAGCACCACTT 57.241 32.000 0.00 0.00 40.05 3.16
12 13 7.944729 ATTCAGAAATAATACAAGCACCACT 57.055 32.000 0.00 0.00 0.00 4.00
13 14 8.986477 AAATTCAGAAATAATACAAGCACCAC 57.014 30.769 0.00 0.00 0.00 4.16
29 30 9.369904 GCTGGAAATGCTAAAATAAATTCAGAA 57.630 29.630 0.00 0.00 0.00 3.02
30 31 7.701924 CGCTGGAAATGCTAAAATAAATTCAGA 59.298 33.333 0.00 0.00 0.00 3.27
31 32 7.701924 TCGCTGGAAATGCTAAAATAAATTCAG 59.298 33.333 0.00 0.00 0.00 3.02
32 33 7.542890 TCGCTGGAAATGCTAAAATAAATTCA 58.457 30.769 0.00 0.00 0.00 2.57
33 34 7.985634 TCGCTGGAAATGCTAAAATAAATTC 57.014 32.000 0.00 0.00 0.00 2.17
34 35 7.042523 GCATCGCTGGAAATGCTAAAATAAATT 60.043 33.333 0.28 0.00 43.87 1.82
35 36 6.421801 GCATCGCTGGAAATGCTAAAATAAAT 59.578 34.615 0.28 0.00 43.87 1.40
36 37 5.748152 GCATCGCTGGAAATGCTAAAATAAA 59.252 36.000 0.28 0.00 43.87 1.40
37 38 5.280945 GCATCGCTGGAAATGCTAAAATAA 58.719 37.500 0.28 0.00 43.87 1.40
38 39 4.554526 CGCATCGCTGGAAATGCTAAAATA 60.555 41.667 5.86 0.00 44.81 1.40
39 40 3.709987 GCATCGCTGGAAATGCTAAAAT 58.290 40.909 0.28 0.00 43.87 1.82
40 41 2.477694 CGCATCGCTGGAAATGCTAAAA 60.478 45.455 5.86 0.00 44.81 1.52
41 42 1.063912 CGCATCGCTGGAAATGCTAAA 59.936 47.619 5.86 0.00 44.81 1.85
42 43 0.657312 CGCATCGCTGGAAATGCTAA 59.343 50.000 5.86 0.00 44.81 3.09
43 44 2.310309 CGCATCGCTGGAAATGCTA 58.690 52.632 5.86 0.00 44.81 3.49
44 45 3.104766 CGCATCGCTGGAAATGCT 58.895 55.556 5.86 0.00 44.81 3.79
55 56 1.274126 CTCTCATCGAAGGCGCATCG 61.274 60.000 23.73 23.73 41.53 3.84
56 57 0.943359 CCTCTCATCGAAGGCGCATC 60.943 60.000 10.83 5.98 37.46 3.91
57 58 1.068753 CCTCTCATCGAAGGCGCAT 59.931 57.895 10.83 0.00 37.46 4.73
58 59 2.009424 CTCCTCTCATCGAAGGCGCA 62.009 60.000 10.83 0.00 37.46 6.09
59 60 1.299773 CTCCTCTCATCGAAGGCGC 60.300 63.158 0.00 0.00 37.46 6.53
60 61 0.030101 GTCTCCTCTCATCGAAGGCG 59.970 60.000 0.00 0.00 39.35 5.52
61 62 0.030101 CGTCTCCTCTCATCGAAGGC 59.970 60.000 0.00 0.00 0.00 4.35
62 63 1.384525 ACGTCTCCTCTCATCGAAGG 58.615 55.000 0.00 0.00 0.00 3.46
63 64 2.223386 GGAACGTCTCCTCTCATCGAAG 60.223 54.545 8.87 0.00 41.61 3.79
64 65 1.743958 GGAACGTCTCCTCTCATCGAA 59.256 52.381 8.87 0.00 41.61 3.71
65 66 1.380524 GGAACGTCTCCTCTCATCGA 58.619 55.000 8.87 0.00 41.61 3.59
66 67 3.928343 GGAACGTCTCCTCTCATCG 57.072 57.895 8.87 0.00 41.61 3.84
74 75 1.154263 CGTCGACAGGAACGTCTCC 60.154 63.158 17.16 8.26 45.81 3.71
75 76 0.452452 GTCGTCGACAGGAACGTCTC 60.452 60.000 20.28 0.00 33.54 3.36
76 77 1.573436 GTCGTCGACAGGAACGTCT 59.427 57.895 20.28 0.00 33.54 4.18
77 78 1.791283 CGTCGTCGACAGGAACGTC 60.791 63.158 24.13 0.00 39.71 4.34
78 79 2.167808 CTCGTCGTCGACAGGAACGT 62.168 60.000 24.13 0.00 41.35 3.99
79 80 1.509370 CTCGTCGTCGACAGGAACG 60.509 63.158 24.13 17.77 41.35 3.95
80 81 1.154263 CCTCGTCGTCGACAGGAAC 60.154 63.158 26.56 6.82 41.35 3.62
81 82 2.974489 GCCTCGTCGTCGACAGGAA 61.974 63.158 31.08 14.07 41.35 3.36
82 83 3.429141 GCCTCGTCGTCGACAGGA 61.429 66.667 31.08 19.58 41.35 3.86
83 84 4.813526 CGCCTCGTCGTCGACAGG 62.814 72.222 26.42 26.42 41.35 4.00
88 89 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
89 90 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
91 92 3.950254 ATCGTAGGCGCCTCGTCG 61.950 66.667 36.73 32.16 36.23 5.12
92 93 2.353607 CATCGTAGGCGCCTCGTC 60.354 66.667 36.73 22.80 38.14 4.20
93 94 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
94 95 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
95 96 0.179108 AAAGTCATCGTAGGCGCCTC 60.179 55.000 36.73 23.04 38.14 4.70
96 97 0.460284 CAAAGTCATCGTAGGCGCCT 60.460 55.000 34.85 34.85 38.14 5.52
97 98 0.739813 ACAAAGTCATCGTAGGCGCC 60.740 55.000 21.89 21.89 38.14 6.53
98 99 1.917273 TACAAAGTCATCGTAGGCGC 58.083 50.000 0.00 0.00 38.14 6.53
99 100 4.804139 AGATTTACAAAGTCATCGTAGGCG 59.196 41.667 0.00 0.00 39.92 5.52
100 101 5.810587 TGAGATTTACAAAGTCATCGTAGGC 59.189 40.000 0.00 0.00 0.00 3.93
101 102 7.759886 TCTTGAGATTTACAAAGTCATCGTAGG 59.240 37.037 0.00 0.00 0.00 3.18
102 103 8.689251 TCTTGAGATTTACAAAGTCATCGTAG 57.311 34.615 0.00 0.00 0.00 3.51
103 104 9.087424 CATCTTGAGATTTACAAAGTCATCGTA 57.913 33.333 0.00 0.00 31.21 3.43
104 105 7.819415 TCATCTTGAGATTTACAAAGTCATCGT 59.181 33.333 0.00 0.00 31.21 3.73
105 106 8.113062 GTCATCTTGAGATTTACAAAGTCATCG 58.887 37.037 0.00 0.00 31.21 3.84
106 107 8.939929 TGTCATCTTGAGATTTACAAAGTCATC 58.060 33.333 4.33 0.00 31.21 2.92
107 108 8.853077 TGTCATCTTGAGATTTACAAAGTCAT 57.147 30.769 4.33 0.00 31.21 3.06
108 109 8.724229 CATGTCATCTTGAGATTTACAAAGTCA 58.276 33.333 8.98 0.00 33.91 3.41
109 110 7.695618 GCATGTCATCTTGAGATTTACAAAGTC 59.304 37.037 8.98 0.00 33.91 3.01
110 111 7.362401 GGCATGTCATCTTGAGATTTACAAAGT 60.362 37.037 0.00 0.00 33.91 2.66
111 112 6.971184 GGCATGTCATCTTGAGATTTACAAAG 59.029 38.462 0.00 7.07 33.91 2.77
112 113 6.403527 CGGCATGTCATCTTGAGATTTACAAA 60.404 38.462 0.00 0.00 33.91 2.83
113 114 5.065090 CGGCATGTCATCTTGAGATTTACAA 59.935 40.000 0.00 0.00 33.91 2.41
114 115 4.571984 CGGCATGTCATCTTGAGATTTACA 59.428 41.667 0.00 7.86 34.39 2.41
115 116 4.024556 CCGGCATGTCATCTTGAGATTTAC 60.025 45.833 0.00 0.00 26.66 2.01
116 117 4.129380 CCGGCATGTCATCTTGAGATTTA 58.871 43.478 0.00 0.00 26.66 1.40
117 118 2.947652 CCGGCATGTCATCTTGAGATTT 59.052 45.455 0.00 0.00 26.66 2.17
118 119 2.569059 CCGGCATGTCATCTTGAGATT 58.431 47.619 0.00 0.00 26.66 2.40
119 120 1.813092 GCCGGCATGTCATCTTGAGAT 60.813 52.381 24.80 0.00 29.62 2.75
120 121 0.462581 GCCGGCATGTCATCTTGAGA 60.463 55.000 24.80 0.00 0.00 3.27
121 122 0.463295 AGCCGGCATGTCATCTTGAG 60.463 55.000 31.54 0.00 0.00 3.02
122 123 0.462581 GAGCCGGCATGTCATCTTGA 60.463 55.000 31.54 0.00 0.00 3.02
123 124 0.745486 TGAGCCGGCATGTCATCTTG 60.745 55.000 31.54 0.00 0.00 3.02
124 125 0.463295 CTGAGCCGGCATGTCATCTT 60.463 55.000 31.54 3.33 0.00 2.40
125 126 1.145598 CTGAGCCGGCATGTCATCT 59.854 57.895 31.54 4.27 0.00 2.90
126 127 1.153289 ACTGAGCCGGCATGTCATC 60.153 57.895 31.54 16.99 0.00 2.92
127 128 1.153289 GACTGAGCCGGCATGTCAT 60.153 57.895 31.54 13.17 0.00 3.06
128 129 2.230994 GAGACTGAGCCGGCATGTCA 62.231 60.000 32.41 25.37 0.00 3.58
129 130 1.520342 GAGACTGAGCCGGCATGTC 60.520 63.158 31.54 29.08 0.00 3.06
130 131 1.954362 GAGAGACTGAGCCGGCATGT 61.954 60.000 31.54 23.16 0.00 3.21
131 132 1.227205 GAGAGACTGAGCCGGCATG 60.227 63.158 31.54 19.90 0.00 4.06
132 133 2.780094 CGAGAGACTGAGCCGGCAT 61.780 63.158 31.54 14.28 0.00 4.40
133 134 3.443925 CGAGAGACTGAGCCGGCA 61.444 66.667 31.54 7.98 0.00 5.69
134 135 2.010582 ATTCGAGAGACTGAGCCGGC 62.011 60.000 21.89 21.89 41.84 6.13
135 136 0.248825 CATTCGAGAGACTGAGCCGG 60.249 60.000 0.00 0.00 42.73 6.13
136 137 0.453793 ACATTCGAGAGACTGAGCCG 59.546 55.000 0.00 0.00 42.73 5.52
137 138 1.919918 CACATTCGAGAGACTGAGCC 58.080 55.000 0.00 0.00 42.73 4.70
138 139 1.276415 GCACATTCGAGAGACTGAGC 58.724 55.000 0.00 0.00 46.03 4.26
139 140 2.937469 AGCACATTCGAGAGACTGAG 57.063 50.000 0.00 0.00 42.73 3.35
140 141 4.991153 ATAAGCACATTCGAGAGACTGA 57.009 40.909 0.00 0.00 42.73 3.41
141 142 5.218885 CCTATAAGCACATTCGAGAGACTG 58.781 45.833 0.00 0.00 45.23 3.51
142 143 4.279671 CCCTATAAGCACATTCGAGAGACT 59.720 45.833 0.00 0.00 41.84 3.24
143 144 4.278669 TCCCTATAAGCACATTCGAGAGAC 59.721 45.833 0.00 0.00 41.84 3.36
144 145 4.278669 GTCCCTATAAGCACATTCGAGAGA 59.721 45.833 0.00 0.00 39.20 3.10
145 146 4.038042 TGTCCCTATAAGCACATTCGAGAG 59.962 45.833 0.00 0.00 0.00 3.20
146 147 3.958147 TGTCCCTATAAGCACATTCGAGA 59.042 43.478 0.00 0.00 0.00 4.04
147 148 4.322080 TGTCCCTATAAGCACATTCGAG 57.678 45.455 0.00 0.00 0.00 4.04
148 149 4.442893 CCTTGTCCCTATAAGCACATTCGA 60.443 45.833 0.00 0.00 0.00 3.71
149 150 3.809832 CCTTGTCCCTATAAGCACATTCG 59.190 47.826 0.00 0.00 0.00 3.34
150 151 4.576463 CACCTTGTCCCTATAAGCACATTC 59.424 45.833 0.00 0.00 0.00 2.67
151 152 4.018415 ACACCTTGTCCCTATAAGCACATT 60.018 41.667 0.00 0.00 0.00 2.71
152 153 3.523564 ACACCTTGTCCCTATAAGCACAT 59.476 43.478 0.00 0.00 0.00 3.21
153 154 2.910319 ACACCTTGTCCCTATAAGCACA 59.090 45.455 0.00 0.00 0.00 4.57
154 155 3.270877 CACACCTTGTCCCTATAAGCAC 58.729 50.000 0.00 0.00 0.00 4.40
155 156 2.355716 GCACACCTTGTCCCTATAAGCA 60.356 50.000 0.00 0.00 0.00 3.91
156 157 2.289565 GCACACCTTGTCCCTATAAGC 58.710 52.381 0.00 0.00 0.00 3.09
157 158 2.093658 ACGCACACCTTGTCCCTATAAG 60.094 50.000 0.00 0.00 0.00 1.73
158 159 1.903860 ACGCACACCTTGTCCCTATAA 59.096 47.619 0.00 0.00 0.00 0.98
159 160 1.206132 CACGCACACCTTGTCCCTATA 59.794 52.381 0.00 0.00 0.00 1.31
160 161 0.036388 CACGCACACCTTGTCCCTAT 60.036 55.000 0.00 0.00 0.00 2.57
161 162 1.369692 CACGCACACCTTGTCCCTA 59.630 57.895 0.00 0.00 0.00 3.53
162 163 2.111043 CACGCACACCTTGTCCCT 59.889 61.111 0.00 0.00 0.00 4.20
163 164 2.203153 ACACGCACACCTTGTCCC 60.203 61.111 0.00 0.00 0.00 4.46
164 165 1.817941 ACACACGCACACCTTGTCC 60.818 57.895 0.00 0.00 0.00 4.02
165 166 1.351707 CACACACGCACACCTTGTC 59.648 57.895 0.00 0.00 0.00 3.18
166 167 2.760159 GCACACACGCACACCTTGT 61.760 57.895 0.00 0.00 0.00 3.16
167 168 2.024588 GCACACACGCACACCTTG 59.975 61.111 0.00 0.00 0.00 3.61
168 169 3.572539 CGCACACACGCACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
169 170 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
170 171 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
171 172 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
172 173 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
173 174 0.442310 ATATGAACGCACACACGCAC 59.558 50.000 0.00 0.00 36.19 5.34
174 175 0.441921 CATATGAACGCACACACGCA 59.558 50.000 0.00 0.00 36.19 5.24
175 176 0.718904 TCATATGAACGCACACACGC 59.281 50.000 1.98 0.00 36.19 5.34
176 177 1.992667 ACTCATATGAACGCACACACG 59.007 47.619 6.90 0.00 39.50 4.49
177 178 2.993220 TCACTCATATGAACGCACACAC 59.007 45.455 6.90 0.00 0.00 3.82
178 179 3.253230 CTCACTCATATGAACGCACACA 58.747 45.455 6.90 0.00 0.00 3.72
179 180 3.061295 CACTCACTCATATGAACGCACAC 59.939 47.826 6.90 0.00 0.00 3.82
180 181 3.253230 CACTCACTCATATGAACGCACA 58.747 45.455 6.90 0.00 0.00 4.57
181 182 3.254060 ACACTCACTCATATGAACGCAC 58.746 45.455 6.90 0.00 0.00 5.34
182 183 3.592898 ACACTCACTCATATGAACGCA 57.407 42.857 6.90 0.00 0.00 5.24
183 184 4.084849 GCATACACTCACTCATATGAACGC 60.085 45.833 6.90 0.00 0.00 4.84
184 185 4.147133 CGCATACACTCACTCATATGAACG 59.853 45.833 6.90 0.85 0.00 3.95
185 186 4.084849 GCGCATACACTCACTCATATGAAC 60.085 45.833 6.90 0.00 0.00 3.18
186 187 4.051237 GCGCATACACTCACTCATATGAA 58.949 43.478 6.90 0.00 0.00 2.57
187 188 3.642705 GCGCATACACTCACTCATATGA 58.357 45.455 0.30 5.07 0.00 2.15
188 189 2.406357 CGCGCATACACTCACTCATATG 59.594 50.000 8.75 0.00 0.00 1.78
189 190 2.034685 ACGCGCATACACTCACTCATAT 59.965 45.455 5.73 0.00 0.00 1.78
190 191 1.404035 ACGCGCATACACTCACTCATA 59.596 47.619 5.73 0.00 0.00 2.15
191 192 0.173481 ACGCGCATACACTCACTCAT 59.827 50.000 5.73 0.00 0.00 2.90
192 193 0.806241 TACGCGCATACACTCACTCA 59.194 50.000 5.73 0.00 0.00 3.41
193 194 1.781429 CATACGCGCATACACTCACTC 59.219 52.381 5.73 0.00 0.00 3.51
194 195 1.840181 CATACGCGCATACACTCACT 58.160 50.000 5.73 0.00 0.00 3.41
195 196 0.229753 GCATACGCGCATACACTCAC 59.770 55.000 5.73 0.00 0.00 3.51
196 197 0.179124 TGCATACGCGCATACACTCA 60.179 50.000 5.73 0.00 42.97 3.41
197 198 2.588731 TGCATACGCGCATACACTC 58.411 52.632 5.73 0.00 42.97 3.51
198 199 4.825377 TGCATACGCGCATACACT 57.175 50.000 5.73 0.00 42.97 3.55
208 209 0.719194 CGCAAGCGCTAATGCATACG 60.719 55.000 28.19 12.26 42.68 3.06
209 210 0.304705 ACGCAAGCGCTAATGCATAC 59.695 50.000 28.19 4.93 42.68 2.39
210 211 0.581529 GACGCAAGCGCTAATGCATA 59.418 50.000 28.19 0.00 42.68 3.14
211 212 1.091771 AGACGCAAGCGCTAATGCAT 61.092 50.000 28.19 17.60 42.68 3.96
212 213 1.741401 AGACGCAAGCGCTAATGCA 60.741 52.632 28.19 0.00 42.68 3.96
213 214 1.297158 CAGACGCAAGCGCTAATGC 60.297 57.895 21.47 21.47 44.19 3.56
214 215 0.025513 GACAGACGCAAGCGCTAATG 59.974 55.000 12.05 7.73 44.19 1.90
215 216 1.084370 GGACAGACGCAAGCGCTAAT 61.084 55.000 12.05 0.00 44.19 1.73
216 217 1.736645 GGACAGACGCAAGCGCTAA 60.737 57.895 12.05 0.00 44.19 3.09
217 218 1.310216 TAGGACAGACGCAAGCGCTA 61.310 55.000 12.05 3.88 44.19 4.26
218 219 1.949847 ATAGGACAGACGCAAGCGCT 61.950 55.000 15.09 2.64 44.19 5.92
219 220 1.519455 ATAGGACAGACGCAAGCGC 60.519 57.895 15.09 0.00 44.19 5.92
220 221 0.458543 ACATAGGACAGACGCAAGCG 60.459 55.000 13.50 13.50 46.03 4.68
221 222 1.726853 AACATAGGACAGACGCAAGC 58.273 50.000 0.00 0.00 45.62 4.01
223 224 7.908827 TTTATTTAACATAGGACAGACGCAA 57.091 32.000 0.00 0.00 0.00 4.85
224 225 7.908827 TTTTATTTAACATAGGACAGACGCA 57.091 32.000 0.00 0.00 0.00 5.24
248 249 1.128200 GAGTTGGGGTTGGCCTTTTT 58.872 50.000 3.32 0.00 34.45 1.94
249 250 0.031616 TGAGTTGGGGTTGGCCTTTT 60.032 50.000 3.32 0.00 34.45 2.27
250 251 0.031616 TTGAGTTGGGGTTGGCCTTT 60.032 50.000 3.32 0.00 34.45 3.11
251 252 0.190815 ATTGAGTTGGGGTTGGCCTT 59.809 50.000 3.32 0.00 34.45 4.35
252 253 0.542702 CATTGAGTTGGGGTTGGCCT 60.543 55.000 3.32 0.00 34.45 5.19
253 254 0.541764 TCATTGAGTTGGGGTTGGCC 60.542 55.000 0.00 0.00 0.00 5.36
254 255 1.205417 CATCATTGAGTTGGGGTTGGC 59.795 52.381 0.00 0.00 0.00 4.52
255 256 2.493278 GACATCATTGAGTTGGGGTTGG 59.507 50.000 0.00 0.00 0.00 3.77
256 257 3.156293 TGACATCATTGAGTTGGGGTTG 58.844 45.455 0.00 0.00 0.00 3.77
257 258 3.074390 TCTGACATCATTGAGTTGGGGTT 59.926 43.478 0.00 0.00 0.00 4.11
258 259 2.644299 TCTGACATCATTGAGTTGGGGT 59.356 45.455 0.00 0.00 0.00 4.95
259 260 3.276857 CTCTGACATCATTGAGTTGGGG 58.723 50.000 0.00 0.00 0.00 4.96
260 261 3.947868 ACTCTGACATCATTGAGTTGGG 58.052 45.455 0.00 0.00 36.50 4.12
261 262 5.954296 AAACTCTGACATCATTGAGTTGG 57.046 39.130 14.04 0.00 45.45 3.77
283 284 2.955660 ACGTCATTGAGCCTTCCAAAAA 59.044 40.909 0.00 0.00 0.00 1.94
284 285 2.552315 GACGTCATTGAGCCTTCCAAAA 59.448 45.455 11.55 0.00 0.00 2.44
285 286 2.151202 GACGTCATTGAGCCTTCCAAA 58.849 47.619 11.55 0.00 0.00 3.28
286 287 1.071542 TGACGTCATTGAGCCTTCCAA 59.928 47.619 15.76 0.00 0.00 3.53
287 288 0.684535 TGACGTCATTGAGCCTTCCA 59.315 50.000 15.76 0.00 0.00 3.53
288 289 1.066858 TCTGACGTCATTGAGCCTTCC 60.067 52.381 20.40 0.00 0.00 3.46
289 290 2.266554 CTCTGACGTCATTGAGCCTTC 58.733 52.381 20.40 0.00 0.00 3.46
290 291 1.620819 ACTCTGACGTCATTGAGCCTT 59.379 47.619 26.24 11.11 0.00 4.35
291 292 1.261480 ACTCTGACGTCATTGAGCCT 58.739 50.000 26.24 11.68 0.00 4.58
292 293 1.728971 CAACTCTGACGTCATTGAGCC 59.271 52.381 26.24 0.00 0.00 4.70
293 294 2.156504 CACAACTCTGACGTCATTGAGC 59.843 50.000 28.19 0.00 0.00 4.26
294 295 2.156504 GCACAACTCTGACGTCATTGAG 59.843 50.000 28.19 26.71 0.00 3.02
295 296 2.135139 GCACAACTCTGACGTCATTGA 58.865 47.619 28.19 18.81 0.00 2.57
296 297 1.136529 CGCACAACTCTGACGTCATTG 60.137 52.381 20.40 21.73 0.00 2.82
297 298 1.139989 CGCACAACTCTGACGTCATT 58.860 50.000 20.40 7.97 0.00 2.57
298 299 1.284982 GCGCACAACTCTGACGTCAT 61.285 55.000 20.40 0.53 0.00 3.06
299 300 1.949133 GCGCACAACTCTGACGTCA 60.949 57.895 18.88 18.88 0.00 4.35
300 301 2.658707 GGCGCACAACTCTGACGTC 61.659 63.158 10.83 9.11 0.00 4.34
301 302 2.661866 GGCGCACAACTCTGACGT 60.662 61.111 10.83 0.00 0.00 4.34
302 303 3.767230 CGGCGCACAACTCTGACG 61.767 66.667 10.83 0.00 0.00 4.35
303 304 4.077188 GCGGCGCACAACTCTGAC 62.077 66.667 29.21 0.00 0.00 3.51
304 305 3.881952 ATGCGGCGCACAACTCTGA 62.882 57.895 38.84 11.56 43.04 3.27
305 306 3.372676 GATGCGGCGCACAACTCTG 62.373 63.158 38.84 0.00 43.04 3.35
306 307 3.121030 GATGCGGCGCACAACTCT 61.121 61.111 38.84 21.12 43.04 3.24
307 308 3.422303 TGATGCGGCGCACAACTC 61.422 61.111 38.84 29.42 43.04 3.01
308 309 3.726517 GTGATGCGGCGCACAACT 61.727 61.111 38.84 22.45 43.04 3.16
309 310 4.759096 GGTGATGCGGCGCACAAC 62.759 66.667 38.84 33.52 43.04 3.32
317 318 3.550431 AGGGGATCGGTGATGCGG 61.550 66.667 0.00 0.00 31.06 5.69
318 319 2.280389 CAGGGGATCGGTGATGCG 60.280 66.667 0.00 0.00 31.06 4.73
319 320 1.758440 TAGCAGGGGATCGGTGATGC 61.758 60.000 0.00 0.00 0.00 3.91
320 321 0.979665 ATAGCAGGGGATCGGTGATG 59.020 55.000 0.00 0.00 0.00 3.07
321 322 1.270907 GATAGCAGGGGATCGGTGAT 58.729 55.000 0.00 0.00 0.00 3.06
322 323 0.832135 GGATAGCAGGGGATCGGTGA 60.832 60.000 0.00 0.00 0.00 4.02
323 324 1.674057 GGATAGCAGGGGATCGGTG 59.326 63.158 0.00 0.00 0.00 4.94
324 325 1.908793 CGGATAGCAGGGGATCGGT 60.909 63.158 0.00 0.00 0.00 4.69
325 326 1.908793 ACGGATAGCAGGGGATCGG 60.909 63.158 0.00 0.00 0.00 4.18
326 327 1.290324 CACGGATAGCAGGGGATCG 59.710 63.158 0.00 0.00 0.00 3.69
327 328 1.004440 GCACGGATAGCAGGGGATC 60.004 63.158 0.00 0.00 0.00 3.36
328 329 2.872388 CGCACGGATAGCAGGGGAT 61.872 63.158 0.00 0.00 0.00 3.85
329 330 3.536917 CGCACGGATAGCAGGGGA 61.537 66.667 0.00 0.00 0.00 4.81
332 333 4.873129 ACGCGCACGGATAGCAGG 62.873 66.667 5.73 0.00 46.04 4.85
333 334 3.620428 CACGCGCACGGATAGCAG 61.620 66.667 5.73 0.00 46.04 4.24
334 335 4.429212 ACACGCGCACGGATAGCA 62.429 61.111 5.73 0.00 46.04 3.49
335 336 3.617538 GACACGCGCACGGATAGC 61.618 66.667 5.73 0.00 46.04 2.97
336 337 3.312504 CGACACGCGCACGGATAG 61.313 66.667 5.73 0.00 46.04 2.08
337 338 4.105733 ACGACACGCGCACGGATA 62.106 61.111 20.13 0.00 46.04 2.59
359 360 8.144478 GGTGCTAGAGATTTTCTTTTCCTTTTT 58.856 33.333 0.00 0.00 37.36 1.94
360 361 7.255977 GGGTGCTAGAGATTTTCTTTTCCTTTT 60.256 37.037 0.00 0.00 37.36 2.27
361 362 6.209589 GGGTGCTAGAGATTTTCTTTTCCTTT 59.790 38.462 0.00 0.00 37.36 3.11
362 363 5.712446 GGGTGCTAGAGATTTTCTTTTCCTT 59.288 40.000 0.00 0.00 37.36 3.36
363 364 5.222130 TGGGTGCTAGAGATTTTCTTTTCCT 60.222 40.000 0.00 0.00 37.36 3.36
364 365 5.010282 TGGGTGCTAGAGATTTTCTTTTCC 58.990 41.667 0.00 0.00 37.36 3.13
365 366 5.106118 GGTGGGTGCTAGAGATTTTCTTTTC 60.106 44.000 0.00 0.00 37.36 2.29
366 367 4.767409 GGTGGGTGCTAGAGATTTTCTTTT 59.233 41.667 0.00 0.00 37.36 2.27
367 368 4.336280 GGTGGGTGCTAGAGATTTTCTTT 58.664 43.478 0.00 0.00 37.36 2.52
368 369 3.308473 GGGTGGGTGCTAGAGATTTTCTT 60.308 47.826 0.00 0.00 37.36 2.52
369 370 2.239907 GGGTGGGTGCTAGAGATTTTCT 59.760 50.000 0.00 0.00 40.06 2.52
370 371 2.644676 GGGTGGGTGCTAGAGATTTTC 58.355 52.381 0.00 0.00 0.00 2.29
371 372 1.065418 CGGGTGGGTGCTAGAGATTTT 60.065 52.381 0.00 0.00 0.00 1.82
372 373 0.541863 CGGGTGGGTGCTAGAGATTT 59.458 55.000 0.00 0.00 0.00 2.17
373 374 1.972660 GCGGGTGGGTGCTAGAGATT 61.973 60.000 0.00 0.00 0.00 2.40
374 375 2.435693 GCGGGTGGGTGCTAGAGAT 61.436 63.158 0.00 0.00 0.00 2.75
375 376 3.075005 GCGGGTGGGTGCTAGAGA 61.075 66.667 0.00 0.00 0.00 3.10
376 377 4.514577 CGCGGGTGGGTGCTAGAG 62.515 72.222 0.00 0.00 0.00 2.43
389 390 4.680237 TCTTGGTGACAGCCGCGG 62.680 66.667 24.05 24.05 44.54 6.46
390 391 3.114616 CTCTTGGTGACAGCCGCG 61.115 66.667 0.00 0.00 44.54 6.46
391 392 3.426568 GCTCTTGGTGACAGCCGC 61.427 66.667 1.47 0.00 44.54 6.53
392 393 3.114616 CGCTCTTGGTGACAGCCG 61.115 66.667 1.47 0.00 44.54 5.52
393 394 2.743928 CCGCTCTTGGTGACAGCC 60.744 66.667 1.47 0.00 44.54 4.85
394 395 3.426568 GCCGCTCTTGGTGACAGC 61.427 66.667 0.00 0.00 44.54 4.40
395 396 1.739562 GAGCCGCTCTTGGTGACAG 60.740 63.158 13.42 0.00 44.54 3.51
396 397 2.343758 GAGCCGCTCTTGGTGACA 59.656 61.111 13.42 0.00 39.83 3.58
397 398 2.811317 CGAGCCGCTCTTGGTGAC 60.811 66.667 18.14 0.00 0.00 3.67
411 412 4.914420 CAGCGGCCGACTAGCGAG 62.914 72.222 33.48 9.29 44.57 5.03
415 416 3.506096 TCGACAGCGGCCGACTAG 61.506 66.667 33.48 20.06 38.28 2.57
420 421 3.693382 TATGTGTCGACAGCGGCCG 62.693 63.158 24.05 24.05 42.58 6.13
421 422 1.878522 CTATGTGTCGACAGCGGCC 60.879 63.158 20.73 7.37 42.58 6.13
422 423 1.878522 CCTATGTGTCGACAGCGGC 60.879 63.158 20.73 7.79 43.78 6.53
430 431 2.158900 AGAAATCTGCCCCTATGTGTCG 60.159 50.000 0.00 0.00 0.00 4.35
472 473 6.693315 TGAAAGGATTTGTTTTCGTCTTCT 57.307 33.333 0.00 0.00 39.27 2.85
473 474 7.749539 TTTGAAAGGATTTGTTTTCGTCTTC 57.250 32.000 0.00 0.00 39.27 2.87
532 536 9.677567 GCCATGAGCTTTTCGATTTTATATTTA 57.322 29.630 0.00 0.00 38.99 1.40
533 537 8.579682 GCCATGAGCTTTTCGATTTTATATTT 57.420 30.769 0.00 0.00 38.99 1.40
575 587 4.010414 GCGCTGAGATCATGCCGC 62.010 66.667 0.00 0.00 33.31 6.53
578 590 1.351012 GTGTGCGCTGAGATCATGC 59.649 57.895 9.73 0.00 0.00 4.06
582 594 1.079543 ACAGGTGTGCGCTGAGATC 60.080 57.895 9.73 0.00 0.00 2.75
585 597 3.108289 CGACAGGTGTGCGCTGAG 61.108 66.667 9.73 0.00 0.00 3.35
586 598 3.911698 ACGACAGGTGTGCGCTGA 61.912 61.111 9.73 0.00 0.00 4.26
587 599 3.705638 CACGACAGGTGTGCGCTG 61.706 66.667 9.73 0.00 41.89 5.18
595 607 0.679505 TAGAGCAAAGCACGACAGGT 59.320 50.000 0.00 0.00 0.00 4.00
596 608 1.929836 GATAGAGCAAAGCACGACAGG 59.070 52.381 0.00 0.00 0.00 4.00
597 609 1.929836 GGATAGAGCAAAGCACGACAG 59.070 52.381 0.00 0.00 0.00 3.51
598 610 1.275010 TGGATAGAGCAAAGCACGACA 59.725 47.619 0.00 0.00 0.00 4.35
599 611 2.010145 TGGATAGAGCAAAGCACGAC 57.990 50.000 0.00 0.00 0.00 4.34
600 612 2.760634 TTGGATAGAGCAAAGCACGA 57.239 45.000 0.00 0.00 0.00 4.35
601 613 2.679837 ACATTGGATAGAGCAAAGCACG 59.320 45.455 0.00 0.00 0.00 5.34
602 614 3.065925 GGACATTGGATAGAGCAAAGCAC 59.934 47.826 0.00 0.00 0.00 4.40
603 615 3.282021 GGACATTGGATAGAGCAAAGCA 58.718 45.455 0.00 0.00 0.00 3.91
604 616 3.282021 TGGACATTGGATAGAGCAAAGC 58.718 45.455 0.00 0.00 0.00 3.51
605 617 4.885907 ACATGGACATTGGATAGAGCAAAG 59.114 41.667 0.00 0.00 0.00 2.77
606 618 4.858850 ACATGGACATTGGATAGAGCAAA 58.141 39.130 0.00 0.00 0.00 3.68
607 619 4.080413 TGACATGGACATTGGATAGAGCAA 60.080 41.667 0.00 0.00 0.00 3.91
608 620 3.455543 TGACATGGACATTGGATAGAGCA 59.544 43.478 0.00 0.00 0.00 4.26
609 621 4.063689 CTGACATGGACATTGGATAGAGC 58.936 47.826 0.00 0.00 0.00 4.09
610 622 4.346127 TCCTGACATGGACATTGGATAGAG 59.654 45.833 0.00 0.00 0.00 2.43
611 623 4.297768 TCCTGACATGGACATTGGATAGA 58.702 43.478 0.00 0.00 0.00 1.98
612 624 4.694760 TCCTGACATGGACATTGGATAG 57.305 45.455 0.00 0.00 0.00 2.08
613 625 4.262592 CGATCCTGACATGGACATTGGATA 60.263 45.833 12.41 0.00 39.17 2.59
614 626 3.495629 CGATCCTGACATGGACATTGGAT 60.496 47.826 12.33 12.33 39.17 3.41
615 627 2.158914 CGATCCTGACATGGACATTGGA 60.159 50.000 0.00 1.99 39.17 3.53
616 628 2.158914 TCGATCCTGACATGGACATTGG 60.159 50.000 0.00 0.00 39.17 3.16
617 629 3.129109 CTCGATCCTGACATGGACATTG 58.871 50.000 0.00 0.00 39.17 2.82
618 630 3.033909 TCTCGATCCTGACATGGACATT 58.966 45.455 0.00 0.00 39.17 2.71
631 643 5.713792 TCCTCACTGAAATATCTCGATCC 57.286 43.478 0.00 0.00 0.00 3.36
652 664 2.067013 CTTCCGAGGGAAACGACTTTC 58.933 52.381 0.00 0.00 41.54 2.62
719 732 0.974010 AAGCGGGAATACGTGGAGGA 60.974 55.000 0.00 0.00 35.98 3.71
765 783 1.004440 AGCAAGGACGTTCCAGCTC 60.004 57.895 4.87 0.00 43.58 4.09
857 878 4.785453 CAGAGGCGGGGCAGGTTC 62.785 72.222 0.00 0.00 0.00 3.62
868 889 0.603975 GTGTTGAGGTGGACAGAGGC 60.604 60.000 0.00 0.00 0.00 4.70
871 892 1.347707 GATGGTGTTGAGGTGGACAGA 59.652 52.381 0.00 0.00 0.00 3.41
872 893 1.072173 TGATGGTGTTGAGGTGGACAG 59.928 52.381 0.00 0.00 0.00 3.51
874 895 1.347707 TCTGATGGTGTTGAGGTGGAC 59.652 52.381 0.00 0.00 0.00 4.02
882 903 3.329386 ACGATTGACTCTGATGGTGTTG 58.671 45.455 0.00 0.00 0.00 3.33
883 904 3.259374 AGACGATTGACTCTGATGGTGTT 59.741 43.478 0.00 0.00 0.00 3.32
884 905 2.828520 AGACGATTGACTCTGATGGTGT 59.171 45.455 0.00 0.00 0.00 4.16
887 908 3.119352 TGTGAGACGATTGACTCTGATGG 60.119 47.826 12.71 0.00 37.70 3.51
893 914 3.362237 CGAAAGTGTGAGACGATTGACTC 59.638 47.826 5.57 5.57 37.40 3.36
895 916 2.408704 CCGAAAGTGTGAGACGATTGAC 59.591 50.000 0.00 0.00 0.00 3.18
928 949 1.542375 AGCAGGGAGGTGGTTGGAT 60.542 57.895 0.00 0.00 0.00 3.41
929 950 2.121963 AGCAGGGAGGTGGTTGGA 60.122 61.111 0.00 0.00 0.00 3.53
1086 1127 4.457496 CCGTCCATGGCGTGCTCT 62.457 66.667 21.61 0.00 0.00 4.09
1226 1267 4.790962 CCATGGCCTGCTGCGTCT 62.791 66.667 3.32 0.00 42.61 4.18
1541 1594 2.266055 GGCTGTCCTTGGTCTCCG 59.734 66.667 0.00 0.00 0.00 4.63
1650 1703 1.003233 GAACGTGAGGGAGGTTGGATT 59.997 52.381 0.00 0.00 32.75 3.01
1660 1722 1.067846 TCGTGATGAAGAACGTGAGGG 60.068 52.381 0.00 0.00 40.61 4.30
1661 1723 2.347697 TCGTGATGAAGAACGTGAGG 57.652 50.000 0.00 0.00 40.61 3.86
1662 1724 3.501950 TCATCGTGATGAAGAACGTGAG 58.498 45.455 10.01 0.00 44.14 3.51
1663 1725 3.569250 TCATCGTGATGAAGAACGTGA 57.431 42.857 10.01 0.00 44.14 4.35
1684 1746 0.037139 AGCAGAGCAGAAGCAGAGTG 60.037 55.000 0.00 0.00 45.49 3.51
1872 1934 1.153549 GGACAGGTAGCAGGCGAAG 60.154 63.158 0.00 0.00 0.00 3.79
1920 1982 3.596214 GACGTTCATGTTGGTGAGGTAT 58.404 45.455 0.00 0.00 0.00 2.73
2169 2231 3.354645 TGCTGCGACGACGAGACT 61.355 61.111 12.29 0.00 42.66 3.24
2223 2285 0.761702 ACTCGTAGGTGGGTGTTGGT 60.762 55.000 0.00 0.00 0.00 3.67
2224 2286 0.320421 CACTCGTAGGTGGGTGTTGG 60.320 60.000 0.00 0.00 33.95 3.77
2225 2287 0.677288 TCACTCGTAGGTGGGTGTTG 59.323 55.000 0.00 0.00 37.75 3.33
2226 2288 1.640917 ATCACTCGTAGGTGGGTGTT 58.359 50.000 0.00 0.00 37.75 3.32
2227 2289 1.275291 CAATCACTCGTAGGTGGGTGT 59.725 52.381 0.00 0.00 37.75 4.16
2228 2290 1.405526 CCAATCACTCGTAGGTGGGTG 60.406 57.143 0.00 0.00 37.75 4.61
2262 2324 2.353607 GAGCCGCGGATACTGACG 60.354 66.667 33.48 0.00 0.00 4.35
2266 2328 1.961180 AAAGCAGAGCCGCGGATACT 61.961 55.000 33.48 18.78 36.85 2.12
2267 2329 1.090052 AAAAGCAGAGCCGCGGATAC 61.090 55.000 33.48 16.49 36.85 2.24
2269 2331 1.675641 AAAAAGCAGAGCCGCGGAT 60.676 52.632 33.48 27.37 36.85 4.18
2270 2332 2.281484 AAAAAGCAGAGCCGCGGA 60.281 55.556 33.48 0.00 36.85 5.54
2288 2352 1.445410 GAGCACACACACGGCGATA 60.445 57.895 16.62 0.00 0.00 2.92
2291 2355 3.705638 CAGAGCACACACACGGCG 61.706 66.667 4.80 4.80 0.00 6.46
2402 2468 4.328983 TGAACGGAATTAAGAAGATGACGC 59.671 41.667 0.00 0.00 0.00 5.19
2415 2481 8.364142 TGGAGAACAATATTTTTGAACGGAATT 58.636 29.630 0.00 0.00 0.00 2.17
2421 2487 7.886338 AGAGGTGGAGAACAATATTTTTGAAC 58.114 34.615 0.00 0.00 0.00 3.18
2424 2490 6.587608 GCAAGAGGTGGAGAACAATATTTTTG 59.412 38.462 0.00 0.00 0.00 2.44
2436 2502 1.306141 ATCGGGCAAGAGGTGGAGA 60.306 57.895 0.00 0.00 0.00 3.71
2501 2567 7.201821 GCATAGAATGGGTAACTAGCAAACATT 60.202 37.037 0.00 0.00 0.00 2.71
2516 2582 3.287867 AACCTGACAGCATAGAATGGG 57.712 47.619 0.00 0.00 0.00 4.00
2554 2627 9.988815 AGTCATAAGTACTGTGGATTATCAATC 57.011 33.333 0.00 0.00 37.17 2.67
2557 2630 7.710907 GCAAGTCATAAGTACTGTGGATTATCA 59.289 37.037 0.00 0.00 0.00 2.15
2558 2631 7.171678 GGCAAGTCATAAGTACTGTGGATTATC 59.828 40.741 0.00 0.00 0.00 1.75
2560 2633 6.346096 GGCAAGTCATAAGTACTGTGGATTA 58.654 40.000 0.00 0.00 0.00 1.75
2562 2635 4.680708 CGGCAAGTCATAAGTACTGTGGAT 60.681 45.833 0.00 0.00 0.00 3.41
2564 2637 2.930040 CGGCAAGTCATAAGTACTGTGG 59.070 50.000 0.00 0.00 0.00 4.17
2565 2638 3.845178 TCGGCAAGTCATAAGTACTGTG 58.155 45.455 0.00 0.00 0.00 3.66
2566 2639 4.402793 AGATCGGCAAGTCATAAGTACTGT 59.597 41.667 0.00 0.00 0.00 3.55
2567 2640 4.938080 AGATCGGCAAGTCATAAGTACTG 58.062 43.478 0.00 0.00 0.00 2.74
2568 2641 6.717540 AGATAGATCGGCAAGTCATAAGTACT 59.282 38.462 0.00 0.00 0.00 2.73
2569 2642 6.915349 AGATAGATCGGCAAGTCATAAGTAC 58.085 40.000 0.00 0.00 0.00 2.73
2578 2651 2.301296 CCCATGAGATAGATCGGCAAGT 59.699 50.000 0.00 0.00 0.00 3.16
2595 2668 3.545703 CCTCGATAGTTTTCAAGCCCAT 58.454 45.455 0.00 0.00 37.40 4.00
2620 2695 0.665835 TGTGGGTGCGTTTTGTGATC 59.334 50.000 0.00 0.00 0.00 2.92
2625 2700 4.728058 CCTTGTGGGTGCGTTTTG 57.272 55.556 0.00 0.00 0.00 2.44
2636 2711 0.404040 ACATACCCACCACCCTTGTG 59.596 55.000 0.00 0.00 42.39 3.33
2638 2713 0.991920 AGACATACCCACCACCCTTG 59.008 55.000 0.00 0.00 0.00 3.61
2640 2715 0.417841 AGAGACATACCCACCACCCT 59.582 55.000 0.00 0.00 0.00 4.34
2641 2716 1.286248 AAGAGACATACCCACCACCC 58.714 55.000 0.00 0.00 0.00 4.61
2644 2719 3.056393 CACGTAAAGAGACATACCCACCA 60.056 47.826 0.00 0.00 0.00 4.17
2645 2720 3.056322 ACACGTAAAGAGACATACCCACC 60.056 47.826 0.00 0.00 0.00 4.61
2646 2721 3.924686 CACACGTAAAGAGACATACCCAC 59.075 47.826 0.00 0.00 0.00 4.61
2647 2722 3.615592 GCACACGTAAAGAGACATACCCA 60.616 47.826 0.00 0.00 0.00 4.51
2648 2723 2.928116 GCACACGTAAAGAGACATACCC 59.072 50.000 0.00 0.00 0.00 3.69
2651 2726 3.427098 CCGAGCACACGTAAAGAGACATA 60.427 47.826 0.00 0.00 0.00 2.29
2652 2727 2.596452 CGAGCACACGTAAAGAGACAT 58.404 47.619 0.00 0.00 0.00 3.06
2653 2728 1.335597 CCGAGCACACGTAAAGAGACA 60.336 52.381 0.00 0.00 0.00 3.41
2654 2729 1.335689 ACCGAGCACACGTAAAGAGAC 60.336 52.381 0.00 0.00 0.00 3.36
2656 2731 1.060713 CACCGAGCACACGTAAAGAG 58.939 55.000 0.00 0.00 0.00 2.85
2657 2732 0.386476 ACACCGAGCACACGTAAAGA 59.614 50.000 0.00 0.00 0.00 2.52
2659 2734 0.931702 CAACACCGAGCACACGTAAA 59.068 50.000 0.00 0.00 0.00 2.01
2660 2735 0.876777 CCAACACCGAGCACACGTAA 60.877 55.000 0.00 0.00 0.00 3.18
2661 2736 1.300311 CCAACACCGAGCACACGTA 60.300 57.895 0.00 0.00 0.00 3.57
2662 2737 2.587753 CCAACACCGAGCACACGT 60.588 61.111 0.00 0.00 0.00 4.49
2663 2738 2.587753 ACCAACACCGAGCACACG 60.588 61.111 0.00 0.00 0.00 4.49
2664 2739 1.522806 TCACCAACACCGAGCACAC 60.523 57.895 0.00 0.00 0.00 3.82
2665 2740 1.522806 GTCACCAACACCGAGCACA 60.523 57.895 0.00 0.00 0.00 4.57
2666 2741 2.594962 CGTCACCAACACCGAGCAC 61.595 63.158 0.00 0.00 0.00 4.40
2667 2742 2.279851 CGTCACCAACACCGAGCA 60.280 61.111 0.00 0.00 0.00 4.26
2668 2743 3.712881 GCGTCACCAACACCGAGC 61.713 66.667 0.00 0.00 0.00 5.03
2669 2744 3.041940 GGCGTCACCAACACCGAG 61.042 66.667 0.00 0.00 38.86 4.63
2714 2915 0.673644 CGTGTTGGATTCCTTCGGCT 60.674 55.000 3.95 0.00 0.00 5.52
2715 2916 0.672401 TCGTGTTGGATTCCTTCGGC 60.672 55.000 3.95 0.00 0.00 5.54
2754 2955 3.587840 TGGTTGCCTAGCCAGGTT 58.412 55.556 0.00 0.00 44.68 3.50
2767 2968 2.508526 GATGCACCAACTTCTCTGGTT 58.491 47.619 0.00 0.00 45.13 3.67
2778 2979 2.982643 ATCCAGGCCGATGCACCAA 61.983 57.895 0.00 0.00 40.13 3.67
2782 2983 3.410628 ACCATCCAGGCCGATGCA 61.411 61.111 13.57 0.00 43.14 3.96
2784 2985 0.887836 CATCACCATCCAGGCCGATG 60.888 60.000 12.38 12.38 41.50 3.84
2785 2986 1.056125 TCATCACCATCCAGGCCGAT 61.056 55.000 0.00 0.00 43.14 4.18
2786 2987 1.688884 TCATCACCATCCAGGCCGA 60.689 57.895 0.00 0.00 43.14 5.54
2787 2988 1.227764 CTCATCACCATCCAGGCCG 60.228 63.158 0.00 0.00 43.14 6.13
2788 2989 0.257039 AACTCATCACCATCCAGGCC 59.743 55.000 0.00 0.00 43.14 5.19
2791 2992 2.544685 GTCGAACTCATCACCATCCAG 58.455 52.381 0.00 0.00 0.00 3.86
2792 2993 1.207089 GGTCGAACTCATCACCATCCA 59.793 52.381 0.00 0.00 32.60 3.41
2793 2994 1.482593 AGGTCGAACTCATCACCATCC 59.517 52.381 0.00 0.00 33.92 3.51
2794 2995 2.166459 TGAGGTCGAACTCATCACCATC 59.834 50.000 28.98 0.95 42.26 3.51
2795 2996 2.167281 CTGAGGTCGAACTCATCACCAT 59.833 50.000 32.16 0.00 45.67 3.55
2796 2997 1.546029 CTGAGGTCGAACTCATCACCA 59.454 52.381 32.16 10.33 45.67 4.17
2797 2998 1.819288 TCTGAGGTCGAACTCATCACC 59.181 52.381 32.16 5.58 45.67 4.02
2798 2999 3.791973 ATCTGAGGTCGAACTCATCAC 57.208 47.619 32.16 6.38 45.67 3.06
2799 3000 4.498241 CAAATCTGAGGTCGAACTCATCA 58.502 43.478 32.16 21.94 45.67 3.07
2800 3001 3.868077 CCAAATCTGAGGTCGAACTCATC 59.132 47.826 32.16 7.49 45.67 2.92
2801 3002 3.515502 TCCAAATCTGAGGTCGAACTCAT 59.484 43.478 32.16 17.04 45.67 2.90
2802 3003 2.897326 TCCAAATCTGAGGTCGAACTCA 59.103 45.455 30.29 30.29 44.74 3.41
2803 3004 3.254892 GTCCAAATCTGAGGTCGAACTC 58.745 50.000 23.85 23.85 37.99 3.01
2804 3005 2.632996 TGTCCAAATCTGAGGTCGAACT 59.367 45.455 0.34 0.34 0.00 3.01
2805 3006 3.040147 TGTCCAAATCTGAGGTCGAAC 57.960 47.619 0.00 0.00 0.00 3.95
2806 3007 3.599343 CATGTCCAAATCTGAGGTCGAA 58.401 45.455 0.00 0.00 0.00 3.71
2810 3011 1.679944 CGCCATGTCCAAATCTGAGGT 60.680 52.381 0.00 0.00 0.00 3.85
2843 3044 4.260825 CGCTATGTCTGAATCTGACGTACT 60.261 45.833 15.29 4.63 35.55 2.73
2877 3078 5.253330 AGAAAATTCGAGACAAATAGCCCA 58.747 37.500 0.00 0.00 0.00 5.36
2892 3093 6.093404 CCGAAGGCTCCTTAAAAGAAAATTC 58.907 40.000 0.38 0.00 46.14 2.17
2914 3115 1.964373 CAGTCCCAAACCGAACCCG 60.964 63.158 0.00 0.00 0.00 5.28
2954 3155 8.757982 AATGTGAGGAAAGCATTATTCTACAT 57.242 30.769 0.00 0.00 32.62 2.29
2962 3163 9.866655 AATAGGAATAATGTGAGGAAAGCATTA 57.133 29.630 0.00 0.00 38.78 1.90
2963 3164 8.773033 AATAGGAATAATGTGAGGAAAGCATT 57.227 30.769 0.00 0.00 36.83 3.56
2965 3166 8.593945 AAAATAGGAATAATGTGAGGAAAGCA 57.406 30.769 0.00 0.00 0.00 3.91
2988 3190 6.424509 CCAGCAATGAAAAGTTCAGCAATAAA 59.575 34.615 5.39 0.00 43.98 1.40
3010 3212 1.202927 ACATTTCCACACACCCTCCAG 60.203 52.381 0.00 0.00 0.00 3.86
3011 3213 0.850100 ACATTTCCACACACCCTCCA 59.150 50.000 0.00 0.00 0.00 3.86
3067 3269 2.093447 ACTTAGGCGGATCCACTGAAAG 60.093 50.000 13.41 12.27 42.29 2.62
3110 3312 1.202557 ACGTTAACAAAGGCCACTCGA 60.203 47.619 5.01 0.00 0.00 4.04
3156 3358 3.695060 TCAAAACAACGGCCTGTAAAAGA 59.305 39.130 0.00 0.00 0.00 2.52
3187 3389 1.071471 CAGTGGCCAGGAAGTCGTT 59.929 57.895 5.11 0.00 0.00 3.85
3205 3407 5.897377 TTAGCCCAAAAGATTGTAGAAGC 57.103 39.130 0.00 0.00 34.60 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.