Multiple sequence alignment - TraesCS5D01G503300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G503300 chr5D 100.000 2480 0 0 1 2480 530171364 530168885 0.000000e+00 4580.0
1 TraesCS5D01G503300 chr5D 94.624 930 47 2 1 929 489802127 489801200 0.000000e+00 1437.0
2 TraesCS5D01G503300 chr5D 94.313 932 49 4 1 930 479235477 479234548 0.000000e+00 1424.0
3 TraesCS5D01G503300 chr5D 94.289 928 48 5 4 929 397160074 397159150 0.000000e+00 1415.0
4 TraesCS5D01G503300 chr5D 94.858 739 32 5 1462 2199 530302080 530301347 0.000000e+00 1149.0
5 TraesCS5D01G503300 chr5D 87.805 451 48 4 1674 2117 530407679 530408129 2.830000e-144 521.0
6 TraesCS5D01G503300 chr5D 80.499 641 69 28 1462 2091 530346852 530346257 8.140000e-120 440.0
7 TraesCS5D01G503300 chr5D 88.776 294 15 5 2196 2475 530168742 530169031 6.570000e-91 344.0
8 TraesCS5D01G503300 chr5D 82.192 219 28 6 1462 1676 530407500 530407711 7.050000e-41 178.0
9 TraesCS5D01G503300 chr5D 75.168 298 45 15 1718 2011 460742944 460743216 2.020000e-21 113.0
10 TraesCS5D01G503300 chr5D 95.652 69 3 0 2412 2480 424906239 424906171 7.250000e-21 111.0
11 TraesCS5D01G503300 chr5B 91.715 2052 106 20 450 2480 669431117 669429109 0.000000e+00 2789.0
12 TraesCS5D01G503300 chr5B 93.832 535 33 0 930 1464 130932028 130931494 0.000000e+00 806.0
13 TraesCS5D01G503300 chr5B 87.857 420 43 4 1677 2089 669485103 669485521 1.030000e-133 486.0
14 TraesCS5D01G503300 chr5B 76.431 297 43 17 1718 2011 566671101 566671373 4.300000e-28 135.0
15 TraesCS5D01G503300 chr1D 94.522 931 49 2 1 929 285017987 285018917 0.000000e+00 1435.0
16 TraesCS5D01G503300 chr1D 92.897 535 38 0 927 1461 453423976 453424510 0.000000e+00 778.0
17 TraesCS5D01G503300 chr1D 92.751 538 34 3 930 1464 69474576 69474041 0.000000e+00 773.0
18 TraesCS5D01G503300 chr1D 86.697 218 15 6 2196 2412 101093072 101093276 1.920000e-56 230.0
19 TraesCS5D01G503300 chr1D 84.615 234 16 11 2196 2415 404304304 404304531 5.370000e-52 215.0
20 TraesCS5D01G503300 chr1D 80.973 226 26 8 2200 2412 52735329 52735550 1.970000e-36 163.0
21 TraesCS5D01G503300 chr1D 92.754 69 5 0 2412 2480 44263901 44263833 1.570000e-17 100.0
22 TraesCS5D01G503300 chr1D 91.304 69 6 0 2412 2480 57509841 57509773 7.300000e-16 95.3
23 TraesCS5D01G503300 chr1D 91.304 69 6 0 2412 2480 193451927 193451995 7.300000e-16 95.3
24 TraesCS5D01G503300 chr3D 94.516 930 49 2 1 929 339051875 339050947 0.000000e+00 1434.0
25 TraesCS5D01G503300 chr3D 94.111 934 53 2 1 932 311578234 311577301 0.000000e+00 1419.0
26 TraesCS5D01G503300 chr3D 94.200 931 50 4 2 929 318600044 318600973 0.000000e+00 1417.0
27 TraesCS5D01G503300 chr3D 88.073 218 24 2 2196 2412 262786205 262785989 8.800000e-65 257.0
28 TraesCS5D01G503300 chr3D 97.101 69 2 0 2412 2480 10273813 10273745 1.560000e-22 117.0
29 TraesCS5D01G503300 chr3D 85.393 89 13 0 1934 2022 41684125 41684037 2.630000e-15 93.5
30 TraesCS5D01G503300 chr2D 94.522 931 47 4 1 929 217786148 217787076 0.000000e+00 1434.0
31 TraesCS5D01G503300 chr2D 94.427 933 47 4 1 929 37541890 37542821 0.000000e+00 1430.0
32 TraesCS5D01G503300 chr2D 92.937 538 34 2 930 1464 292662171 292661635 0.000000e+00 780.0
33 TraesCS5D01G503300 chr2D 79.710 414 73 9 1677 2084 627843208 627842800 3.120000e-74 289.0
34 TraesCS5D01G503300 chr2D 87.923 207 23 2 2206 2412 455246973 455246769 2.460000e-60 243.0
35 TraesCS5D01G503300 chr2D 93.333 60 4 0 1512 1571 627843342 627843283 3.400000e-14 89.8
36 TraesCS5D01G503300 chr6D 94.539 531 29 0 930 1460 266069934 266069404 0.000000e+00 821.0
37 TraesCS5D01G503300 chr6D 89.083 229 10 4 2196 2412 192281327 192281552 1.130000e-68 270.0
38 TraesCS5D01G503300 chr6D 87.336 229 15 6 2196 2412 3621531 3621305 1.470000e-62 250.0
39 TraesCS5D01G503300 chr6D 87.558 217 25 2 2196 2412 271427825 271427611 1.470000e-62 250.0
40 TraesCS5D01G503300 chr6D 86.026 229 16 5 2196 2412 237490481 237490705 5.330000e-57 231.0
41 TraesCS5D01G503300 chr6D 85.776 232 16 9 2196 2412 77837291 77837062 1.920000e-56 230.0
42 TraesCS5D01G503300 chr6D 85.590 229 19 6 2196 2412 7569362 7569136 6.900000e-56 228.0
43 TraesCS5D01G503300 chr6D 84.649 228 13 7 2196 2411 160869586 160869369 8.990000e-50 207.0
44 TraesCS5D01G503300 chr6D 82.969 229 26 5 2196 2412 68915890 68915663 7.000000e-46 195.0
45 TraesCS5D01G503300 chr6D 81.739 230 25 10 2195 2412 461627289 461627513 2.530000e-40 176.0
46 TraesCS5D01G503300 chr6D 80.531 226 29 8 2200 2412 19095136 19094913 2.550000e-35 159.0
47 TraesCS5D01G503300 chr6D 86.916 107 14 0 1728 1834 14275085 14275191 1.200000e-23 121.0
48 TraesCS5D01G503300 chr6D 91.549 71 6 0 1718 1788 14360654 14360724 5.640000e-17 99.0
49 TraesCS5D01G503300 chr6D 90.141 71 7 0 1718 1788 14309283 14309213 2.630000e-15 93.5
50 TraesCS5D01G503300 chr6D 91.045 67 6 0 2414 2480 324568402 324568468 9.450000e-15 91.6
51 TraesCS5D01G503300 chr6D 90.000 70 7 0 2411 2480 354685202 354685271 9.450000e-15 91.6
52 TraesCS5D01G503300 chr6D 89.855 69 7 0 2412 2480 5642894 5642826 3.400000e-14 89.8
53 TraesCS5D01G503300 chr6D 89.855 69 7 0 2412 2480 24776947 24777015 3.400000e-14 89.8
54 TraesCS5D01G503300 chr6D 89.855 69 7 0 2412 2480 237383288 237383356 3.400000e-14 89.8
55 TraesCS5D01G503300 chr4D 93.284 536 35 1 930 1464 440455957 440455422 0.000000e+00 789.0
56 TraesCS5D01G503300 chr4D 88.018 217 25 1 2196 2412 121825613 121825398 3.170000e-64 255.0
57 TraesCS5D01G503300 chr4D 85.590 229 9 5 2196 2412 121831623 121831407 4.150000e-53 219.0
58 TraesCS5D01G503300 chr4D 84.348 230 21 7 2196 2412 273297612 273297839 6.950000e-51 211.0
59 TraesCS5D01G503300 chr4D 94.203 69 4 0 2412 2480 273297824 273297756 3.370000e-19 106.0
60 TraesCS5D01G503300 chr4D 94.203 69 4 0 2412 2480 440278541 440278473 3.370000e-19 106.0
61 TraesCS5D01G503300 chr4D 91.304 69 6 0 2412 2480 354996096 354996164 7.300000e-16 95.3
62 TraesCS5D01G503300 chr4D 91.304 69 6 0 2412 2480 505435518 505435450 7.300000e-16 95.3
63 TraesCS5D01G503300 chr4D 91.045 67 6 0 2414 2480 8313634 8313568 9.450000e-15 91.6
64 TraesCS5D01G503300 chr5A 93.524 525 33 1 938 1461 626615024 626615548 0.000000e+00 780.0
65 TraesCS5D01G503300 chr5A 92.710 535 34 3 930 1461 1812203 1811671 0.000000e+00 767.0
66 TraesCS5D01G503300 chr5A 88.345 429 41 6 1773 2200 658487212 658486792 7.910000e-140 507.0
67 TraesCS5D01G503300 chr5A 92.145 331 23 3 1463 1793 658488477 658488150 4.830000e-127 464.0
68 TraesCS5D01G503300 chr5A 85.662 272 34 4 1683 1950 658599943 658600213 5.220000e-72 281.0
69 TraesCS5D01G503300 chr5A 80.000 220 26 13 1462 1675 658494392 658494185 1.990000e-31 147.0
70 TraesCS5D01G503300 chr4A 91.705 217 17 1 2196 2412 140726267 140726052 1.440000e-77 300.0
71 TraesCS5D01G503300 chr4A 89.091 220 20 2 2196 2412 11684462 11684680 1.130000e-68 270.0
72 TraesCS5D01G503300 chr4A 87.156 218 25 3 2196 2412 567788101 567787886 6.850000e-61 244.0
73 TraesCS5D01G503300 chr4A 87.324 213 26 1 2200 2412 347059907 347059696 2.460000e-60 243.0
74 TraesCS5D01G503300 chr6B 81.365 381 52 11 1677 2043 26196185 26195810 2.410000e-75 292.0
75 TraesCS5D01G503300 chr6B 82.175 331 55 4 1716 2044 26086682 26086354 5.220000e-72 281.0
76 TraesCS5D01G503300 chr6B 87.558 217 22 3 2200 2412 282977830 282978045 1.900000e-61 246.0
77 TraesCS5D01G503300 chr6B 94.444 36 2 0 1631 1666 498772 498807 3.450000e-04 56.5
78 TraesCS5D01G503300 chr6A 83.385 325 45 7 1727 2043 15590774 15590451 2.410000e-75 292.0
79 TraesCS5D01G503300 chr6A 88.210 229 14 8 2196 2412 453011966 453012193 6.800000e-66 261.0
80 TraesCS5D01G503300 chr6A 87.336 229 15 3 2196 2412 565045450 565045224 1.470000e-62 250.0
81 TraesCS5D01G503300 chr6A 94.203 69 4 0 2412 2480 290648280 290648348 3.370000e-19 106.0
82 TraesCS5D01G503300 chr6A 94.030 67 4 0 2414 2480 2072569 2072503 4.360000e-18 102.0
83 TraesCS5D01G503300 chr4B 88.210 229 13 3 2196 2412 569372092 569372318 6.800000e-66 261.0
84 TraesCS5D01G503300 chr4B 86.697 218 27 2 2196 2412 190211081 190211297 8.860000e-60 241.0
85 TraesCS5D01G503300 chr4B 95.652 69 3 0 2412 2480 240829407 240829475 7.250000e-21 111.0
86 TraesCS5D01G503300 chr7A 88.073 218 24 2 2196 2412 714029544 714029328 8.800000e-65 257.0
87 TraesCS5D01G503300 chr7A 97.101 69 2 0 2412 2480 709604387 709604319 1.560000e-22 117.0
88 TraesCS5D01G503300 chr1A 87.554 233 15 4 2193 2412 154499070 154499301 8.800000e-65 257.0
89 TraesCS5D01G503300 chr1A 86.463 229 17 6 2196 2412 379136771 379136997 3.190000e-59 239.0
90 TraesCS5D01G503300 chr1A 92.308 169 11 2 2242 2410 497491014 497491180 3.190000e-59 239.0
91 TraesCS5D01G503300 chr1A 85.455 220 27 4 2195 2412 330255417 330255201 8.930000e-55 224.0
92 TraesCS5D01G503300 chr1A 95.652 69 3 0 2412 2480 154499286 154499218 7.250000e-21 111.0
93 TraesCS5D01G503300 chr1A 94.203 69 4 0 2412 2480 232812280 232812212 3.370000e-19 106.0
94 TraesCS5D01G503300 chr1A 92.754 69 5 0 2412 2480 539269139 539269071 1.570000e-17 100.0
95 TraesCS5D01G503300 chr2B 78.989 376 75 4 1672 2044 770597187 770597561 1.140000e-63 254.0
96 TraesCS5D01G503300 chr2B 79.394 330 59 2 1718 2047 770100574 770100254 8.930000e-55 224.0
97 TraesCS5D01G503300 chr2A 79.101 378 68 9 1677 2044 758372193 758372569 1.470000e-62 250.0
98 TraesCS5D01G503300 chrUn 86.463 229 17 3 2196 2412 75666736 75666510 3.190000e-59 239.0
99 TraesCS5D01G503300 chrUn 86.996 223 16 2 2201 2411 96609111 96608890 3.190000e-59 239.0
100 TraesCS5D01G503300 chrUn 86.463 229 17 7 2196 2412 446627715 446627941 3.190000e-59 239.0
101 TraesCS5D01G503300 chrUn 86.463 229 15 5 2196 2410 26618210 26617984 1.150000e-58 237.0
102 TraesCS5D01G503300 chrUn 86.522 230 10 12 2196 2412 471489176 471488955 1.480000e-57 233.0
103 TraesCS5D01G503300 chrUn 92.667 150 8 3 2196 2345 185975780 185975926 1.930000e-51 213.0
104 TraesCS5D01G503300 chrUn 84.120 233 18 11 2195 2413 337378700 337378473 8.990000e-50 207.0
105 TraesCS5D01G503300 chrUn 87.117 163 17 4 2196 2358 13408362 13408520 5.450000e-42 182.0
106 TraesCS5D01G503300 chrUn 86.503 163 18 4 2196 2358 360044591 360044749 2.530000e-40 176.0
107 TraesCS5D01G503300 chrUn 97.101 69 2 0 2412 2480 26617997 26618065 1.560000e-22 117.0
108 TraesCS5D01G503300 chrUn 83.969 131 9 4 2294 2412 103268362 103268232 5.600000e-22 115.0
109 TraesCS5D01G503300 chrUn 94.203 69 4 0 2412 2480 446627926 446627858 3.370000e-19 106.0
110 TraesCS5D01G503300 chrUn 89.855 69 7 0 2412 2480 342744061 342743993 3.400000e-14 89.8
111 TraesCS5D01G503300 chrUn 89.855 69 7 0 2412 2480 458809026 458808958 3.400000e-14 89.8
112 TraesCS5D01G503300 chrUn 89.394 66 7 0 2412 2477 47369632 47369697 1.580000e-12 84.2
113 TraesCS5D01G503300 chrUn 88.406 69 8 0 2412 2480 278516850 278516782 1.580000e-12 84.2
114 TraesCS5D01G503300 chrUn 88.406 69 8 0 2412 2480 424780672 424780604 1.580000e-12 84.2
115 TraesCS5D01G503300 chrUn 89.062 64 7 0 2414 2477 386640163 386640226 2.040000e-11 80.5
116 TraesCS5D01G503300 chrUn 86.957 69 9 0 2412 2480 77898591 77898659 7.350000e-11 78.7
117 TraesCS5D01G503300 chr7B 98.551 69 1 0 2412 2480 675022676 675022608 3.350000e-24 122.0
118 TraesCS5D01G503300 chr7B 95.652 69 3 0 2412 2480 86633221 86633289 7.250000e-21 111.0
119 TraesCS5D01G503300 chr3B 97.101 69 2 0 2412 2480 718653560 718653628 1.560000e-22 117.0
120 TraesCS5D01G503300 chr1B 97.101 69 2 0 2412 2480 667168620 667168688 1.560000e-22 117.0
121 TraesCS5D01G503300 chr3A 97.015 67 2 0 2412 2478 504114356 504114290 2.020000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G503300 chr5D 530168885 530171364 2479 True 4580.0 4580 100.0000 1 2480 1 chr5D.!!$R5 2479
1 TraesCS5D01G503300 chr5D 489801200 489802127 927 True 1437.0 1437 94.6240 1 929 1 chr5D.!!$R4 928
2 TraesCS5D01G503300 chr5D 479234548 479235477 929 True 1424.0 1424 94.3130 1 930 1 chr5D.!!$R3 929
3 TraesCS5D01G503300 chr5D 397159150 397160074 924 True 1415.0 1415 94.2890 4 929 1 chr5D.!!$R1 925
4 TraesCS5D01G503300 chr5D 530301347 530302080 733 True 1149.0 1149 94.8580 1462 2199 1 chr5D.!!$R6 737
5 TraesCS5D01G503300 chr5D 530346257 530346852 595 True 440.0 440 80.4990 1462 2091 1 chr5D.!!$R7 629
6 TraesCS5D01G503300 chr5D 530407500 530408129 629 False 349.5 521 84.9985 1462 2117 2 chr5D.!!$F3 655
7 TraesCS5D01G503300 chr5B 669429109 669431117 2008 True 2789.0 2789 91.7150 450 2480 1 chr5B.!!$R2 2030
8 TraesCS5D01G503300 chr5B 130931494 130932028 534 True 806.0 806 93.8320 930 1464 1 chr5B.!!$R1 534
9 TraesCS5D01G503300 chr1D 285017987 285018917 930 False 1435.0 1435 94.5220 1 929 1 chr1D.!!$F4 928
10 TraesCS5D01G503300 chr1D 453423976 453424510 534 False 778.0 778 92.8970 927 1461 1 chr1D.!!$F6 534
11 TraesCS5D01G503300 chr1D 69474041 69474576 535 True 773.0 773 92.7510 930 1464 1 chr1D.!!$R3 534
12 TraesCS5D01G503300 chr3D 339050947 339051875 928 True 1434.0 1434 94.5160 1 929 1 chr3D.!!$R5 928
13 TraesCS5D01G503300 chr3D 311577301 311578234 933 True 1419.0 1419 94.1110 1 932 1 chr3D.!!$R4 931
14 TraesCS5D01G503300 chr3D 318600044 318600973 929 False 1417.0 1417 94.2000 2 929 1 chr3D.!!$F1 927
15 TraesCS5D01G503300 chr2D 217786148 217787076 928 False 1434.0 1434 94.5220 1 929 1 chr2D.!!$F2 928
16 TraesCS5D01G503300 chr2D 37541890 37542821 931 False 1430.0 1430 94.4270 1 929 1 chr2D.!!$F1 928
17 TraesCS5D01G503300 chr2D 292661635 292662171 536 True 780.0 780 92.9370 930 1464 1 chr2D.!!$R1 534
18 TraesCS5D01G503300 chr6D 266069404 266069934 530 True 821.0 821 94.5390 930 1460 1 chr6D.!!$R9 530
19 TraesCS5D01G503300 chr4D 440455422 440455957 535 True 789.0 789 93.2840 930 1464 1 chr4D.!!$R6 534
20 TraesCS5D01G503300 chr5A 626615024 626615548 524 False 780.0 780 93.5240 938 1461 1 chr5A.!!$F1 523
21 TraesCS5D01G503300 chr5A 1811671 1812203 532 True 767.0 767 92.7100 930 1461 1 chr5A.!!$R1 531
22 TraesCS5D01G503300 chr5A 658486792 658488477 1685 True 485.5 507 90.2450 1463 2200 2 chr5A.!!$R3 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 481 2.710377 TGTCTCTCTGTCTCTCTCTGC 58.29 52.381 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 2796 0.107945 GCCAGCTTCTCCATCGTCTT 60.108 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 6.558771 TCATAGCAATTCATCAATTACCGG 57.441 37.500 0.00 0.00 30.51 5.28
218 219 4.410400 GGGTTGCGGGAGAGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
479 481 2.710377 TGTCTCTCTGTCTCTCTCTGC 58.290 52.381 0.00 0.00 0.00 4.26
524 527 5.883673 CCTTTCACCGTTTCTTATATTCCCA 59.116 40.000 0.00 0.00 0.00 4.37
573 576 9.619316 CTGAAATTTTAACACGATTTGTATCCA 57.381 29.630 0.00 0.00 37.51 3.41
978 1006 4.363990 CGCACCAGACGCTCACCT 62.364 66.667 0.00 0.00 0.00 4.00
1106 1134 3.335534 GTCAACCGCACGCTCGTT 61.336 61.111 0.00 0.00 0.00 3.85
1484 1517 2.632512 TGCACACACTCTGGTGAATCTA 59.367 45.455 3.06 0.00 45.61 1.98
1489 1522 4.186926 CACACTCTGGTGAATCTATGTGG 58.813 47.826 3.06 0.00 45.61 4.17
1515 1551 2.673775 TGGAATTGGCTGTGAAGGAA 57.326 45.000 0.00 0.00 0.00 3.36
1924 2928 2.970974 GCGTGGAGGCTGCTGAAAC 61.971 63.158 7.74 0.00 0.00 2.78
1931 2935 1.905354 GGCTGCTGAAACTGGGCTT 60.905 57.895 0.00 0.00 0.00 4.35
2166 3171 1.496060 TGGGCTCTATGTCGGTGATT 58.504 50.000 0.00 0.00 0.00 2.57
2212 3217 7.450634 ACCAGGCTTGAGAGTAATATTACGATA 59.549 37.037 17.77 5.64 38.65 2.92
2400 3405 6.764877 ATGGCGAGTACATATTTTCTTACG 57.235 37.500 0.00 0.00 0.00 3.18
2401 3406 4.505191 TGGCGAGTACATATTTTCTTACGC 59.495 41.667 0.00 0.00 41.22 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 2.824936 TCGTTGTCCTACCGGTAATTGA 59.175 45.455 16.65 9.72 0.00 2.57
102 103 6.527372 GTCTGAGTAGATTTTCGTTGTCCTAC 59.473 42.308 0.00 0.00 34.94 3.18
218 219 0.247736 CCCCATCTATCTACAGCGGC 59.752 60.000 0.00 0.00 0.00 6.53
439 441 0.105194 TATCCAATCTCGGAGGGGCA 60.105 55.000 4.96 0.00 38.83 5.36
524 527 2.623889 CCAATCGGAGTTACGGATCTCT 59.376 50.000 5.71 0.00 37.53 3.10
573 576 0.601311 GCCGCAAGAAGCCGATATCT 60.601 55.000 0.34 0.00 41.38 1.98
579 582 3.651480 CTTTCGCCGCAAGAAGCCG 62.651 63.158 0.00 0.00 41.38 5.52
723 748 1.660167 GGGATAAAAACCGACGGAGG 58.340 55.000 23.38 0.00 37.30 4.30
1340 1370 1.183549 GTGTCGGTCTATGGAGGTGT 58.816 55.000 0.00 0.00 0.00 4.16
1484 1517 2.575532 CCAATTCCATCTACGCCACAT 58.424 47.619 0.00 0.00 0.00 3.21
1489 1522 1.331756 CACAGCCAATTCCATCTACGC 59.668 52.381 0.00 0.00 0.00 4.42
1515 1551 1.470051 AACACAAGCTGTTCCGGTTT 58.530 45.000 0.00 0.00 38.94 3.27
1804 2796 0.107945 GCCAGCTTCTCCATCGTCTT 60.108 55.000 0.00 0.00 0.00 3.01
1847 2839 1.278172 CTTGCTCGTCACTGTGACCG 61.278 60.000 29.42 23.99 44.20 4.79
2156 3161 2.668001 CGTGGTACGTAAATCACCGACA 60.668 50.000 14.98 0.00 36.74 4.35
2166 3171 4.202161 TGGTTTTCTTACCGTGGTACGTAA 60.202 41.667 0.00 0.00 40.58 3.18
2187 3192 6.085555 TCGTAATATTACTCTCAAGCCTGG 57.914 41.667 20.54 3.89 0.00 4.45
2374 3379 8.757789 CGTAAGAAAATATGTACTCGCCATAAA 58.242 33.333 0.00 0.00 43.02 1.40
2375 3380 7.095940 GCGTAAGAAAATATGTACTCGCCATAA 60.096 37.037 0.00 0.00 43.02 1.90
2376 3381 6.364165 GCGTAAGAAAATATGTACTCGCCATA 59.636 38.462 0.00 0.00 43.02 2.74
2377 3382 5.176958 GCGTAAGAAAATATGTACTCGCCAT 59.823 40.000 0.00 0.00 43.02 4.40
2378 3383 4.505191 GCGTAAGAAAATATGTACTCGCCA 59.495 41.667 0.00 0.00 43.02 5.69
2379 3384 4.743644 AGCGTAAGAAAATATGTACTCGCC 59.256 41.667 0.00 0.00 40.60 5.54
2380 3385 5.686397 AGAGCGTAAGAAAATATGTACTCGC 59.314 40.000 0.00 0.00 43.02 5.03
2381 3386 7.133513 AGAGAGCGTAAGAAAATATGTACTCG 58.866 38.462 0.00 0.00 43.02 4.18
2382 3387 8.859517 AAGAGAGCGTAAGAAAATATGTACTC 57.140 34.615 0.00 0.00 43.02 2.59
2383 3388 9.654663 AAAAGAGAGCGTAAGAAAATATGTACT 57.345 29.630 0.00 0.00 43.02 2.73
2398 3403 9.654663 AGTACATATTTTCTAAAAAGAGAGCGT 57.345 29.630 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.