Multiple sequence alignment - TraesCS5D01G503000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G503000 chr5D 100.000 5517 0 0 1 5517 530060359 530065875 0.000000e+00 10189
1 TraesCS5D01G503000 chr5D 80.282 142 18 7 5289 5422 409881732 409881593 1.260000e-16 99
2 TraesCS5D01G503000 chr5B 94.751 3448 119 20 1567 5005 669288905 669292299 0.000000e+00 5308
3 TraesCS5D01G503000 chr5B 88.928 1436 86 32 164 1569 669287465 669288857 0.000000e+00 1703
4 TraesCS5D01G503000 chr5B 81.852 799 122 14 3347 4127 657170980 657170187 0.000000e+00 651
5 TraesCS5D01G503000 chr5B 93.506 77 4 1 4992 5068 669292318 669292393 4.520000e-21 113
6 TraesCS5D01G503000 chr5A 94.888 1917 62 9 3172 5068 657981464 657983364 0.000000e+00 2964
7 TraesCS5D01G503000 chr5A 94.077 1587 59 19 1567 3133 657979897 657981468 0.000000e+00 2377
8 TraesCS5D01G503000 chr5A 87.258 1444 111 33 158 1569 657978447 657979849 0.000000e+00 1580
9 TraesCS5D01G503000 chr5A 89.773 88 8 1 71 157 657854030 657854117 1.620000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G503000 chr5D 530060359 530065875 5516 False 10189.000000 10189 100.000000 1 5517 1 chr5D.!!$F1 5516
1 TraesCS5D01G503000 chr5B 669287465 669292393 4928 False 2374.666667 5308 92.395000 164 5068 3 chr5B.!!$F1 4904
2 TraesCS5D01G503000 chr5B 657170187 657170980 793 True 651.000000 651 81.852000 3347 4127 1 chr5B.!!$R1 780
3 TraesCS5D01G503000 chr5A 657978447 657983364 4917 False 2307.000000 2964 92.074333 158 5068 3 chr5A.!!$F2 4910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.105760 TTGGGCCAAAGTGTGACCAT 60.106 50.0 18.51 0.0 35.05 3.55 F
30 31 0.774276 TGGGCCAAAGTGTGACCATA 59.226 50.0 2.13 0.0 31.52 2.74 F
1448 1486 0.962356 CACTGGGGTGTGATTGGAGC 60.962 60.0 0.00 0.0 40.12 4.70 F
3040 3144 0.109458 CTGATTGTGCAGCGCATTGT 60.109 50.0 11.47 0.0 41.91 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1539 0.389391 AGATGTAAGATCACCGGCGG 59.611 55.000 27.06 27.06 0.00 6.13 R
1528 1568 1.825474 AGACCCACTCTAATCACCACG 59.175 52.381 0.00 0.00 0.00 4.94 R
3269 3420 0.233332 GACTCGAGCAACAGTGTTGC 59.767 55.000 41.06 41.06 45.22 4.17 R
4745 4929 1.414919 GCCCATCACCGGTAACTATGA 59.585 52.381 6.87 0.00 33.30 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.890158 CCTCTTATTTTTGGGCCAAAGT 57.110 40.909 28.89 23.26 34.72 2.66
22 23 4.568956 CCTCTTATTTTTGGGCCAAAGTG 58.431 43.478 28.89 18.08 34.72 3.16
23 24 4.040339 CCTCTTATTTTTGGGCCAAAGTGT 59.960 41.667 28.89 20.76 34.72 3.55
24 25 4.954875 TCTTATTTTTGGGCCAAAGTGTG 58.045 39.130 28.89 19.14 34.72 3.82
25 26 4.651503 TCTTATTTTTGGGCCAAAGTGTGA 59.348 37.500 28.89 20.76 34.72 3.58
26 27 2.682155 TTTTTGGGCCAAAGTGTGAC 57.318 45.000 28.89 0.00 34.72 3.67
27 28 0.827368 TTTTGGGCCAAAGTGTGACC 59.173 50.000 28.89 0.00 34.72 4.02
28 29 0.324738 TTTGGGCCAAAGTGTGACCA 60.325 50.000 27.28 2.14 33.75 4.02
29 30 0.105760 TTGGGCCAAAGTGTGACCAT 60.106 50.000 18.51 0.00 35.05 3.55
30 31 0.774276 TGGGCCAAAGTGTGACCATA 59.226 50.000 2.13 0.00 31.52 2.74
31 32 1.145945 TGGGCCAAAGTGTGACCATAA 59.854 47.619 2.13 0.00 31.52 1.90
32 33 2.243810 GGGCCAAAGTGTGACCATAAA 58.756 47.619 4.39 0.00 0.00 1.40
33 34 2.831526 GGGCCAAAGTGTGACCATAAAT 59.168 45.455 4.39 0.00 0.00 1.40
34 35 3.119137 GGGCCAAAGTGTGACCATAAATC 60.119 47.826 4.39 0.00 0.00 2.17
35 36 3.763897 GGCCAAAGTGTGACCATAAATCT 59.236 43.478 0.00 0.00 0.00 2.40
36 37 4.947388 GGCCAAAGTGTGACCATAAATCTA 59.053 41.667 0.00 0.00 0.00 1.98
37 38 5.417580 GGCCAAAGTGTGACCATAAATCTAA 59.582 40.000 0.00 0.00 0.00 2.10
38 39 6.322491 GCCAAAGTGTGACCATAAATCTAAC 58.678 40.000 0.00 0.00 0.00 2.34
39 40 6.151144 GCCAAAGTGTGACCATAAATCTAACT 59.849 38.462 0.00 0.00 0.00 2.24
40 41 7.335924 GCCAAAGTGTGACCATAAATCTAACTA 59.664 37.037 0.00 0.00 0.00 2.24
41 42 9.226606 CCAAAGTGTGACCATAAATCTAACTAA 57.773 33.333 0.00 0.00 0.00 2.24
52 53 9.672673 CCATAAATCTAACTAATACTCCATGGG 57.327 37.037 13.02 5.22 0.00 4.00
69 70 8.190326 CTCCATGGGAGTACATATAAAGTACA 57.810 38.462 13.02 2.25 44.25 2.90
70 71 8.736097 TCCATGGGAGTACATATAAAGTACAT 57.264 34.615 13.02 6.25 43.24 2.29
71 72 9.166222 TCCATGGGAGTACATATAAAGTACATT 57.834 33.333 13.02 0.00 43.24 2.71
72 73 9.436957 CCATGGGAGTACATATAAAGTACATTC 57.563 37.037 2.85 9.16 43.24 2.67
73 74 9.996554 CATGGGAGTACATATAAAGTACATTCA 57.003 33.333 16.54 12.24 43.24 2.57
89 90 9.474920 AAGTACATTCAAAACAAACATACCATG 57.525 29.630 0.00 0.00 0.00 3.66
90 91 8.087750 AGTACATTCAAAACAAACATACCATGG 58.912 33.333 11.19 11.19 33.60 3.66
91 92 6.229733 ACATTCAAAACAAACATACCATGGG 58.770 36.000 18.09 0.00 33.60 4.00
92 93 6.042552 ACATTCAAAACAAACATACCATGGGA 59.957 34.615 18.09 8.35 33.60 4.37
93 94 5.720371 TCAAAACAAACATACCATGGGAG 57.280 39.130 18.09 7.76 33.60 4.30
94 95 5.389520 TCAAAACAAACATACCATGGGAGA 58.610 37.500 18.09 0.54 33.60 3.71
95 96 5.242838 TCAAAACAAACATACCATGGGAGAC 59.757 40.000 18.09 0.00 33.60 3.36
113 114 6.685527 GGAGACCTTCTCAAATACAAATCC 57.314 41.667 5.58 0.00 45.12 3.01
114 115 6.180472 GGAGACCTTCTCAAATACAAATCCA 58.820 40.000 5.58 0.00 45.12 3.41
115 116 6.659242 GGAGACCTTCTCAAATACAAATCCAA 59.341 38.462 5.58 0.00 45.12 3.53
116 117 7.362142 GGAGACCTTCTCAAATACAAATCCAAC 60.362 40.741 5.58 0.00 45.12 3.77
117 118 7.004086 AGACCTTCTCAAATACAAATCCAACA 58.996 34.615 0.00 0.00 0.00 3.33
118 119 7.671398 AGACCTTCTCAAATACAAATCCAACAT 59.329 33.333 0.00 0.00 0.00 2.71
119 120 8.193953 ACCTTCTCAAATACAAATCCAACATT 57.806 30.769 0.00 0.00 0.00 2.71
120 121 9.308000 ACCTTCTCAAATACAAATCCAACATTA 57.692 29.630 0.00 0.00 0.00 1.90
212 214 3.387397 GGGATACAATAAACTCGGACGG 58.613 50.000 0.00 0.00 39.74 4.79
214 216 4.262335 GGGATACAATAAACTCGGACGGAT 60.262 45.833 0.00 0.00 39.74 4.18
215 217 5.295152 GGATACAATAAACTCGGACGGATT 58.705 41.667 0.00 0.00 0.00 3.01
238 240 6.135290 TGAGTAACAAGTAGTAACACACGT 57.865 37.500 0.00 0.00 0.00 4.49
240 242 7.841185 TTGAGTAACAAGTAGTAACACACGTGT 60.841 37.037 17.22 17.22 38.71 4.49
247 249 8.137437 ACAAGTAGTAACACACGTGTATTTAGT 58.863 33.333 22.90 23.05 44.13 2.24
292 296 2.282462 CAAAGGGCGAGGCAAGGT 60.282 61.111 0.00 0.00 0.00 3.50
343 347 3.319405 ACCACCTAACAGCTATCTGATCG 59.681 47.826 0.00 0.00 42.95 3.69
384 388 1.276421 ACTTCGACTGCCTAGCACAAT 59.724 47.619 0.00 0.00 33.79 2.71
438 442 2.439507 GCCATGATAGGGAGAAGGTTGA 59.560 50.000 0.00 0.00 0.00 3.18
480 484 3.034635 GGAGCTCTCCCTTGTAAGATGA 58.965 50.000 14.64 0.00 43.94 2.92
496 500 2.481952 AGATGAGAAAAAGACGCACTGC 59.518 45.455 0.00 0.00 0.00 4.40
534 538 4.021807 ACGAAGGAGAGAAAGGAAAGAGAC 60.022 45.833 0.00 0.00 0.00 3.36
546 550 3.714798 AGGAAAGAGACAAGGTTGTACCA 59.285 43.478 0.00 0.00 41.95 3.25
563 567 2.356313 AGCAAGAGCACGTGTCGG 60.356 61.111 18.38 11.61 45.49 4.79
594 598 1.456544 GTTTATTTCCGTCGCGTGACA 59.543 47.619 27.16 9.52 45.80 3.58
630 635 4.129737 CGGCCGGTCAGTCGTCAT 62.130 66.667 20.10 0.00 0.00 3.06
638 646 3.551890 CCGGTCAGTCGTCATTCATTTAG 59.448 47.826 0.00 0.00 0.00 1.85
641 649 4.201724 GGTCAGTCGTCATTCATTTAGCAC 60.202 45.833 0.00 0.00 0.00 4.40
666 675 9.313118 ACACTCAAACCATAAACAAGATTTTTC 57.687 29.630 0.00 0.00 0.00 2.29
690 705 4.321230 GGGTCAAACAGTGATTAAAGGCTG 60.321 45.833 0.00 0.00 38.90 4.85
692 707 3.888323 TCAAACAGTGATTAAAGGCTGCA 59.112 39.130 0.50 0.00 32.65 4.41
693 708 3.923017 AACAGTGATTAAAGGCTGCAC 57.077 42.857 0.50 0.00 32.65 4.57
694 709 2.162681 ACAGTGATTAAAGGCTGCACC 58.837 47.619 0.50 0.00 39.61 5.01
696 711 2.557924 CAGTGATTAAAGGCTGCACCAA 59.442 45.455 0.50 0.00 43.14 3.67
697 712 3.005684 CAGTGATTAAAGGCTGCACCAAA 59.994 43.478 0.50 0.00 43.14 3.28
698 713 3.640967 AGTGATTAAAGGCTGCACCAAAA 59.359 39.130 0.50 0.62 43.14 2.44
699 714 3.740832 GTGATTAAAGGCTGCACCAAAAC 59.259 43.478 0.50 0.00 43.14 2.43
702 717 4.479786 TTAAAGGCTGCACCAAAACTTT 57.520 36.364 0.50 2.65 43.14 2.66
703 718 3.348647 AAAGGCTGCACCAAAACTTTT 57.651 38.095 0.50 0.00 43.14 2.27
705 720 4.479786 AAGGCTGCACCAAAACTTTTAA 57.520 36.364 0.50 0.00 43.14 1.52
707 722 3.196685 AGGCTGCACCAAAACTTTTAACA 59.803 39.130 0.50 0.00 43.14 2.41
709 724 4.574421 GGCTGCACCAAAACTTTTAACATT 59.426 37.500 0.50 0.00 38.86 2.71
710 725 5.277297 GGCTGCACCAAAACTTTTAACATTC 60.277 40.000 0.50 0.00 38.86 2.67
711 726 5.293079 GCTGCACCAAAACTTTTAACATTCA 59.707 36.000 0.00 0.00 0.00 2.57
714 729 8.273780 TGCACCAAAACTTTTAACATTCATTT 57.726 26.923 0.00 0.00 0.00 2.32
715 730 9.383519 TGCACCAAAACTTTTAACATTCATTTA 57.616 25.926 0.00 0.00 0.00 1.40
716 731 9.862585 GCACCAAAACTTTTAACATTCATTTAG 57.137 29.630 0.00 0.00 0.00 1.85
753 768 7.479352 TTTCTTTTGAATGAAGGCCATCATA 57.521 32.000 23.08 6.61 39.08 2.15
771 786 9.262358 GCCATCATAGTTACTTTACTCTTTAGG 57.738 37.037 0.00 0.00 0.00 2.69
811 826 8.723942 AGCATACATTCTAAACTCTAAAGTGG 57.276 34.615 0.00 0.00 35.36 4.00
839 854 5.072741 CCAAGTTTCCCATCTTGAAAGAGA 58.927 41.667 6.50 0.00 42.22 3.10
858 873 1.633945 GAAAGAGAGGGGGTTGCCTTA 59.366 52.381 0.00 0.00 0.00 2.69
930 945 4.232061 CCAACCCAACCCCAGGCA 62.232 66.667 0.00 0.00 0.00 4.75
1386 1414 2.807895 CGGTGCGAATTCGTCCGT 60.808 61.111 34.96 0.00 45.49 4.69
1387 1415 2.776072 GGTGCGAATTCGTCCGTG 59.224 61.111 27.24 0.54 42.22 4.94
1388 1416 2.095843 GTGCGAATTCGTCCGTGC 59.904 61.111 27.24 11.28 42.22 5.34
1432 1470 2.111043 CCGTGTCCTTGGTGCACT 59.889 61.111 17.98 0.00 0.00 4.40
1448 1486 0.962356 CACTGGGGTGTGATTGGAGC 60.962 60.000 0.00 0.00 40.12 4.70
1455 1495 1.675310 TGTGATTGGAGCGGGCTTG 60.675 57.895 0.00 0.00 0.00 4.01
1457 1497 2.751436 GATTGGAGCGGGCTTGCA 60.751 61.111 0.00 0.00 37.31 4.08
1486 1526 2.202623 GTCGACGATGCCGCTTCT 60.203 61.111 0.00 0.00 39.95 2.85
1487 1527 2.102357 TCGACGATGCCGCTTCTC 59.898 61.111 0.00 1.61 39.95 2.87
1488 1528 3.315521 CGACGATGCCGCTTCTCG 61.316 66.667 4.88 8.53 39.95 4.04
1497 1537 2.277628 CGCTTCTCGGCTCTCGTC 60.278 66.667 0.00 0.00 40.32 4.20
1498 1538 2.277628 GCTTCTCGGCTCTCGTCG 60.278 66.667 0.00 0.00 40.22 5.12
1499 1539 2.277628 CTTCTCGGCTCTCGTCGC 60.278 66.667 0.00 0.00 38.35 5.19
1500 1540 3.743091 CTTCTCGGCTCTCGTCGCC 62.743 68.421 0.00 0.00 44.11 5.54
1513 1553 3.142162 TCGCCGCCGGTGATCTTA 61.142 61.111 16.71 0.00 37.29 2.10
1514 1554 2.960129 CGCCGCCGGTGATCTTAC 60.960 66.667 18.79 0.00 34.74 2.34
1519 1559 1.611977 CCGCCGGTGATCTTACATCTA 59.388 52.381 18.79 0.00 0.00 1.98
1521 1561 3.306088 CCGCCGGTGATCTTACATCTATT 60.306 47.826 18.79 0.00 0.00 1.73
1524 1564 4.631131 CCGGTGATCTTACATCTATTGCA 58.369 43.478 0.00 0.00 0.00 4.08
1528 1568 6.074088 CGGTGATCTTACATCTATTGCAGTTC 60.074 42.308 0.00 0.00 0.00 3.01
1616 1707 1.135046 CGATGCGATGGTCACTCATC 58.865 55.000 0.00 0.00 39.93 2.92
1822 1916 6.037786 TGGACATGGAGTTACTACTTTCAG 57.962 41.667 0.00 0.00 33.84 3.02
1953 2047 5.360714 CCCCTTTTAATCTCTGCTGCATTTA 59.639 40.000 1.31 0.00 0.00 1.40
1954 2048 6.127366 CCCCTTTTAATCTCTGCTGCATTTAA 60.127 38.462 1.31 3.30 0.00 1.52
1955 2049 7.322664 CCCTTTTAATCTCTGCTGCATTTAAA 58.677 34.615 1.31 8.87 0.00 1.52
2150 2244 2.039746 ACTGGGATCGATGTTTGGTTCA 59.960 45.455 0.54 0.00 0.00 3.18
2163 2257 7.062138 CGATGTTTGGTTCACTGGATAAATTTG 59.938 37.037 0.00 0.00 0.00 2.32
2164 2258 6.520272 TGTTTGGTTCACTGGATAAATTTGG 58.480 36.000 0.00 0.00 0.00 3.28
2219 2313 1.255667 ATCTTAGTCGGGGTGCGTGT 61.256 55.000 0.00 0.00 0.00 4.49
2421 2522 1.936547 GTTGGGTCATTCGAGCTGATC 59.063 52.381 0.00 2.99 39.68 2.92
2450 2551 4.275689 CGGGCATATGCTTTTGATTCTGTA 59.724 41.667 26.12 0.00 41.70 2.74
2487 2588 5.255687 TGAATTTTTGGATCTAGCTGCTCA 58.744 37.500 4.91 0.00 0.00 4.26
2489 2590 3.988976 TTTTGGATCTAGCTGCTCACT 57.011 42.857 4.91 0.00 0.00 3.41
2495 2596 1.226916 CTAGCTGCTCACTGAGGCG 60.227 63.158 4.91 0.00 0.00 5.52
2514 2617 3.197983 GGCGAGCTATATAGGGGTGATTT 59.802 47.826 11.72 0.00 0.00 2.17
2653 2756 6.506147 TGACACCAACTCATTTTGATCAAAG 58.494 36.000 19.64 11.52 0.00 2.77
2747 2851 3.448093 TGAATGCCCATGGTAGTTCAA 57.552 42.857 11.73 0.81 0.00 2.69
2850 2954 4.936411 CCAATGGATGTTGCTGCATTTAAA 59.064 37.500 1.84 0.00 35.31 1.52
3015 3119 5.764686 TGCTAAATCATGTCTTTATGCCGAT 59.235 36.000 0.00 0.00 0.00 4.18
3039 3143 2.648972 CTGATTGTGCAGCGCATTG 58.351 52.632 11.47 0.00 41.91 2.82
3040 3144 0.109458 CTGATTGTGCAGCGCATTGT 60.109 50.000 11.47 0.00 41.91 2.71
3130 3281 6.204495 ACAAAATTTGCCGCATGAAATTACTT 59.796 30.769 5.52 0.00 32.66 2.24
3131 3282 5.783100 AATTTGCCGCATGAAATTACTTG 57.217 34.783 0.00 0.00 31.48 3.16
3132 3283 2.937469 TGCCGCATGAAATTACTTGG 57.063 45.000 0.00 0.00 0.00 3.61
3133 3284 2.441410 TGCCGCATGAAATTACTTGGA 58.559 42.857 0.00 0.00 0.00 3.53
3134 3285 2.423185 TGCCGCATGAAATTACTTGGAG 59.577 45.455 0.00 0.00 0.00 3.86
3135 3286 2.796032 GCCGCATGAAATTACTTGGAGC 60.796 50.000 0.00 0.00 0.00 4.70
3136 3287 2.539547 CCGCATGAAATTACTTGGAGCG 60.540 50.000 0.00 0.00 42.00 5.03
3137 3288 2.539547 CGCATGAAATTACTTGGAGCGG 60.540 50.000 0.00 0.00 39.07 5.52
3138 3289 2.223572 GCATGAAATTACTTGGAGCGGG 60.224 50.000 0.00 0.00 0.00 6.13
3139 3290 3.278574 CATGAAATTACTTGGAGCGGGA 58.721 45.455 0.00 0.00 0.00 5.14
3140 3291 3.644966 TGAAATTACTTGGAGCGGGAT 57.355 42.857 0.00 0.00 0.00 3.85
3141 3292 3.963129 TGAAATTACTTGGAGCGGGATT 58.037 40.909 0.00 0.00 0.00 3.01
3142 3293 5.105567 TGAAATTACTTGGAGCGGGATTA 57.894 39.130 0.00 0.00 0.00 1.75
3143 3294 5.502079 TGAAATTACTTGGAGCGGGATTAA 58.498 37.500 0.00 0.00 0.00 1.40
3144 3295 5.946972 TGAAATTACTTGGAGCGGGATTAAA 59.053 36.000 0.00 0.00 0.00 1.52
3145 3296 6.434652 TGAAATTACTTGGAGCGGGATTAAAA 59.565 34.615 0.00 0.00 0.00 1.52
3146 3297 6.451064 AATTACTTGGAGCGGGATTAAAAG 57.549 37.500 0.00 0.00 0.00 2.27
3147 3298 3.713826 ACTTGGAGCGGGATTAAAAGA 57.286 42.857 0.00 0.00 0.00 2.52
3148 3299 4.236527 ACTTGGAGCGGGATTAAAAGAT 57.763 40.909 0.00 0.00 0.00 2.40
3149 3300 5.367945 ACTTGGAGCGGGATTAAAAGATA 57.632 39.130 0.00 0.00 0.00 1.98
3150 3301 5.751586 ACTTGGAGCGGGATTAAAAGATAA 58.248 37.500 0.00 0.00 0.00 1.75
3151 3302 6.365520 ACTTGGAGCGGGATTAAAAGATAAT 58.634 36.000 0.00 0.00 0.00 1.28
3152 3303 6.486993 ACTTGGAGCGGGATTAAAAGATAATC 59.513 38.462 0.60 0.60 34.19 1.75
3153 3304 5.935945 TGGAGCGGGATTAAAAGATAATCA 58.064 37.500 9.63 0.00 36.06 2.57
3154 3305 6.361433 TGGAGCGGGATTAAAAGATAATCAA 58.639 36.000 9.63 0.00 36.06 2.57
3155 3306 6.831353 TGGAGCGGGATTAAAAGATAATCAAA 59.169 34.615 9.63 0.00 36.06 2.69
3156 3307 7.505585 TGGAGCGGGATTAAAAGATAATCAAAT 59.494 33.333 9.63 0.00 36.06 2.32
3157 3308 7.809806 GGAGCGGGATTAAAAGATAATCAAATG 59.190 37.037 9.63 0.00 36.06 2.32
3158 3309 7.147976 AGCGGGATTAAAAGATAATCAAATGC 58.852 34.615 9.63 7.42 36.06 3.56
3159 3310 6.366061 GCGGGATTAAAAGATAATCAAATGCC 59.634 38.462 9.63 0.00 36.06 4.40
3160 3311 7.432869 CGGGATTAAAAGATAATCAAATGCCA 58.567 34.615 9.63 0.00 35.32 4.92
3161 3312 7.382218 CGGGATTAAAAGATAATCAAATGCCAC 59.618 37.037 9.63 0.00 35.32 5.01
3162 3313 8.424133 GGGATTAAAAGATAATCAAATGCCACT 58.576 33.333 9.63 0.00 35.58 4.00
3163 3314 9.468532 GGATTAAAAGATAATCAAATGCCACTC 57.531 33.333 9.63 0.00 36.06 3.51
3166 3317 9.859427 TTAAAAGATAATCAAATGCCACTCAAG 57.141 29.630 0.00 0.00 0.00 3.02
3167 3318 7.707624 AAAGATAATCAAATGCCACTCAAGA 57.292 32.000 0.00 0.00 0.00 3.02
3168 3319 7.707624 AAGATAATCAAATGCCACTCAAGAA 57.292 32.000 0.00 0.00 0.00 2.52
3169 3320 7.893124 AGATAATCAAATGCCACTCAAGAAT 57.107 32.000 0.00 0.00 0.00 2.40
3170 3321 8.985315 AGATAATCAAATGCCACTCAAGAATA 57.015 30.769 0.00 0.00 0.00 1.75
3171 3322 9.584008 AGATAATCAAATGCCACTCAAGAATAT 57.416 29.630 0.00 0.00 0.00 1.28
3261 3412 9.617523 AAAACCAATTTTCTTTGATCTGAACAT 57.382 25.926 0.00 0.00 32.29 2.71
3270 3421 8.654230 TTCTTTGATCTGAACATATACTGAGC 57.346 34.615 0.00 0.00 0.00 4.26
3271 3422 7.785033 TCTTTGATCTGAACATATACTGAGCA 58.215 34.615 0.00 0.00 0.00 4.26
3272 3423 8.260114 TCTTTGATCTGAACATATACTGAGCAA 58.740 33.333 0.00 0.00 38.09 3.91
3431 3598 2.873649 GCTTCTGTCCCTGAGTGGAAAG 60.874 54.545 1.88 1.88 40.62 2.62
3946 4113 5.013495 TGAAAAGAGTGATCAAGAGGATGGT 59.987 40.000 0.00 0.00 36.00 3.55
3976 4143 4.954092 ACATCATCCTCGAAAGAAAAGC 57.046 40.909 0.00 0.00 41.32 3.51
4013 4180 7.872138 TGGATCTTCTTCCACAAGGTATTAAT 58.128 34.615 0.00 0.00 40.90 1.40
4078 4249 3.371102 TGCCTGTCATTACTATCTCGC 57.629 47.619 0.00 0.00 0.00 5.03
4154 4325 7.920682 GTGTCTGTGGTGAAAATCATTTTACTT 59.079 33.333 0.00 0.00 35.84 2.24
4287 4463 9.461312 ACTGTCTTATGAAATAATAACCTGCAA 57.539 29.630 0.00 0.00 38.29 4.08
4397 4573 5.992217 CAGGCACTAGTCTACTTTGAAAGTT 59.008 40.000 16.49 0.38 39.23 2.66
4398 4574 5.992217 AGGCACTAGTCTACTTTGAAAGTTG 59.008 40.000 16.49 14.16 39.23 3.16
4587 4770 9.020813 GTGGAAGAAGAATTAACAGTTTTGTTC 57.979 33.333 0.00 0.00 44.00 3.18
4892 5076 5.483583 AGGAGAGAAGGGAAGTGATATATGC 59.516 44.000 0.00 0.00 0.00 3.14
4908 5094 2.996985 TGCAGAGTGGGCATAGAGT 58.003 52.632 0.00 0.00 36.11 3.24
4941 5127 7.765819 AGAAATGCATTTAGGTATTCTTTTGGC 59.234 33.333 24.15 6.47 0.00 4.52
4942 5128 5.991933 TGCATTTAGGTATTCTTTTGGCA 57.008 34.783 0.00 0.00 0.00 4.92
4954 5140 2.627699 TCTTTTGGCATGTCCTGAAACC 59.372 45.455 0.00 0.00 35.26 3.27
4963 5149 4.702131 GCATGTCCTGAAACCTAAATCTGT 59.298 41.667 0.00 0.00 0.00 3.41
5016 5234 3.761897 ACAGATTTTTGGGGAATGTCGA 58.238 40.909 0.00 0.00 0.00 4.20
5068 5291 5.605908 TGATTCTCATCTAGGGCATTCTTCT 59.394 40.000 0.00 0.00 0.00 2.85
5069 5292 5.543507 TTCTCATCTAGGGCATTCTTCTC 57.456 43.478 0.00 0.00 0.00 2.87
5070 5293 3.900601 TCTCATCTAGGGCATTCTTCTCC 59.099 47.826 0.00 0.00 0.00 3.71
5071 5294 2.630098 TCATCTAGGGCATTCTTCTCCG 59.370 50.000 0.00 0.00 0.00 4.63
5072 5295 1.414158 TCTAGGGCATTCTTCTCCGG 58.586 55.000 0.00 0.00 0.00 5.14
5073 5296 1.123928 CTAGGGCATTCTTCTCCGGT 58.876 55.000 0.00 0.00 0.00 5.28
5074 5297 0.830648 TAGGGCATTCTTCTCCGGTG 59.169 55.000 0.00 0.00 0.00 4.94
5075 5298 0.909610 AGGGCATTCTTCTCCGGTGA 60.910 55.000 0.00 0.06 0.00 4.02
5076 5299 0.181350 GGGCATTCTTCTCCGGTGAT 59.819 55.000 7.11 0.00 0.00 3.06
5077 5300 1.408822 GGGCATTCTTCTCCGGTGATT 60.409 52.381 7.11 0.00 0.00 2.57
5078 5301 1.672881 GGCATTCTTCTCCGGTGATTG 59.327 52.381 7.11 4.05 0.00 2.67
5079 5302 2.632377 GCATTCTTCTCCGGTGATTGA 58.368 47.619 7.11 6.37 0.00 2.57
5080 5303 3.209410 GCATTCTTCTCCGGTGATTGAT 58.791 45.455 7.11 0.00 0.00 2.57
5081 5304 3.003068 GCATTCTTCTCCGGTGATTGATG 59.997 47.826 7.11 11.79 0.00 3.07
5082 5305 2.988010 TCTTCTCCGGTGATTGATGG 57.012 50.000 7.11 0.00 0.00 3.51
5083 5306 2.466846 TCTTCTCCGGTGATTGATGGA 58.533 47.619 7.11 0.00 0.00 3.41
5084 5307 2.168521 TCTTCTCCGGTGATTGATGGAC 59.831 50.000 7.11 0.00 0.00 4.02
5085 5308 1.567357 TCTCCGGTGATTGATGGACA 58.433 50.000 0.00 0.00 0.00 4.02
5086 5309 2.118679 TCTCCGGTGATTGATGGACAT 58.881 47.619 0.00 0.00 0.00 3.06
5087 5310 3.304829 TCTCCGGTGATTGATGGACATA 58.695 45.455 0.00 0.00 0.00 2.29
5088 5311 3.709141 TCTCCGGTGATTGATGGACATAA 59.291 43.478 0.00 0.00 0.00 1.90
5089 5312 4.060900 CTCCGGTGATTGATGGACATAAG 58.939 47.826 0.00 0.00 0.00 1.73
5090 5313 2.549754 CCGGTGATTGATGGACATAAGC 59.450 50.000 0.00 0.00 0.00 3.09
5091 5314 3.205338 CGGTGATTGATGGACATAAGCA 58.795 45.455 0.00 0.00 0.00 3.91
5092 5315 3.249320 CGGTGATTGATGGACATAAGCAG 59.751 47.826 0.00 0.00 0.00 4.24
5093 5316 4.202441 GGTGATTGATGGACATAAGCAGT 58.798 43.478 0.00 0.00 0.00 4.40
5094 5317 4.274459 GGTGATTGATGGACATAAGCAGTC 59.726 45.833 0.00 0.00 35.29 3.51
5095 5318 4.877823 GTGATTGATGGACATAAGCAGTCA 59.122 41.667 0.00 0.00 37.74 3.41
5096 5319 5.007430 GTGATTGATGGACATAAGCAGTCAG 59.993 44.000 0.00 0.00 37.74 3.51
5097 5320 4.824479 TTGATGGACATAAGCAGTCAGA 57.176 40.909 0.00 0.00 37.74 3.27
5098 5321 5.363562 TTGATGGACATAAGCAGTCAGAT 57.636 39.130 0.00 0.00 37.74 2.90
5099 5322 6.484364 TTGATGGACATAAGCAGTCAGATA 57.516 37.500 0.00 0.00 37.74 1.98
5100 5323 6.484364 TGATGGACATAAGCAGTCAGATAA 57.516 37.500 0.00 0.00 37.74 1.75
5101 5324 6.283694 TGATGGACATAAGCAGTCAGATAAC 58.716 40.000 0.00 0.00 37.74 1.89
5102 5325 5.939764 TGGACATAAGCAGTCAGATAACT 57.060 39.130 0.00 0.00 37.74 2.24
5103 5326 7.287696 TGATGGACATAAGCAGTCAGATAACTA 59.712 37.037 0.00 0.00 37.74 2.24
5104 5327 7.043961 TGGACATAAGCAGTCAGATAACTAG 57.956 40.000 0.00 0.00 37.74 2.57
5105 5328 5.923684 GGACATAAGCAGTCAGATAACTAGC 59.076 44.000 0.00 0.00 37.74 3.42
5106 5329 6.461648 GGACATAAGCAGTCAGATAACTAGCA 60.462 42.308 0.00 0.00 37.74 3.49
5107 5330 6.511416 ACATAAGCAGTCAGATAACTAGCAG 58.489 40.000 0.00 0.00 0.00 4.24
5108 5331 3.451141 AGCAGTCAGATAACTAGCAGC 57.549 47.619 0.00 0.00 0.00 5.25
5109 5332 2.102252 AGCAGTCAGATAACTAGCAGCC 59.898 50.000 0.00 0.00 0.00 4.85
5110 5333 2.102252 GCAGTCAGATAACTAGCAGCCT 59.898 50.000 0.00 0.00 0.00 4.58
5111 5334 3.319405 GCAGTCAGATAACTAGCAGCCTA 59.681 47.826 0.00 0.00 0.00 3.93
5112 5335 4.794655 GCAGTCAGATAACTAGCAGCCTAC 60.795 50.000 0.00 0.00 0.00 3.18
5113 5336 4.339530 CAGTCAGATAACTAGCAGCCTACA 59.660 45.833 0.00 0.00 0.00 2.74
5114 5337 4.339814 AGTCAGATAACTAGCAGCCTACAC 59.660 45.833 0.00 0.00 0.00 2.90
5115 5338 4.098044 GTCAGATAACTAGCAGCCTACACA 59.902 45.833 0.00 0.00 0.00 3.72
5116 5339 4.709886 TCAGATAACTAGCAGCCTACACAA 59.290 41.667 0.00 0.00 0.00 3.33
5117 5340 5.186992 TCAGATAACTAGCAGCCTACACAAA 59.813 40.000 0.00 0.00 0.00 2.83
5118 5341 5.874810 CAGATAACTAGCAGCCTACACAAAA 59.125 40.000 0.00 0.00 0.00 2.44
5119 5342 6.371548 CAGATAACTAGCAGCCTACACAAAAA 59.628 38.462 0.00 0.00 0.00 1.94
5192 5415 5.956068 TTTTTGCTTGTTTTGCTTTCCTT 57.044 30.435 0.00 0.00 0.00 3.36
5193 5416 5.956068 TTTTGCTTGTTTTGCTTTCCTTT 57.044 30.435 0.00 0.00 0.00 3.11
5194 5417 5.544136 TTTGCTTGTTTTGCTTTCCTTTC 57.456 34.783 0.00 0.00 0.00 2.62
5195 5418 3.530535 TGCTTGTTTTGCTTTCCTTTCC 58.469 40.909 0.00 0.00 0.00 3.13
5196 5419 3.197549 TGCTTGTTTTGCTTTCCTTTCCT 59.802 39.130 0.00 0.00 0.00 3.36
5197 5420 4.404073 TGCTTGTTTTGCTTTCCTTTCCTA 59.596 37.500 0.00 0.00 0.00 2.94
5198 5421 4.984785 GCTTGTTTTGCTTTCCTTTCCTAG 59.015 41.667 0.00 0.00 0.00 3.02
5199 5422 5.529581 TTGTTTTGCTTTCCTTTCCTAGG 57.470 39.130 0.82 0.82 46.27 3.02
5200 5423 4.542697 TGTTTTGCTTTCCTTTCCTAGGT 58.457 39.130 9.08 0.00 45.03 3.08
5201 5424 4.340950 TGTTTTGCTTTCCTTTCCTAGGTG 59.659 41.667 9.08 0.47 45.03 4.00
5202 5425 4.447138 TTTGCTTTCCTTTCCTAGGTGA 57.553 40.909 9.08 0.00 45.03 4.02
5203 5426 3.703001 TGCTTTCCTTTCCTAGGTGAG 57.297 47.619 9.08 7.85 45.03 3.51
5204 5427 3.248024 TGCTTTCCTTTCCTAGGTGAGA 58.752 45.455 9.08 0.00 45.03 3.27
5205 5428 3.650942 TGCTTTCCTTTCCTAGGTGAGAA 59.349 43.478 9.08 5.52 45.03 2.87
5206 5429 4.104102 TGCTTTCCTTTCCTAGGTGAGAAA 59.896 41.667 9.08 12.42 45.03 2.52
5207 5430 5.070685 GCTTTCCTTTCCTAGGTGAGAAAA 58.929 41.667 9.08 3.76 45.03 2.29
5208 5431 5.712446 GCTTTCCTTTCCTAGGTGAGAAAAT 59.288 40.000 9.08 0.00 45.03 1.82
5209 5432 6.884836 GCTTTCCTTTCCTAGGTGAGAAAATA 59.115 38.462 9.08 0.00 45.03 1.40
5210 5433 7.148222 GCTTTCCTTTCCTAGGTGAGAAAATAC 60.148 40.741 9.08 4.08 45.03 1.89
5211 5434 5.974108 TCCTTTCCTAGGTGAGAAAATACG 58.026 41.667 9.08 0.00 45.03 3.06
5212 5435 5.482878 TCCTTTCCTAGGTGAGAAAATACGT 59.517 40.000 9.08 0.00 45.03 3.57
5213 5436 5.581085 CCTTTCCTAGGTGAGAAAATACGTG 59.419 44.000 9.08 0.00 39.39 4.49
5214 5437 5.988310 TTCCTAGGTGAGAAAATACGTGA 57.012 39.130 9.08 0.00 0.00 4.35
5215 5438 5.988310 TCCTAGGTGAGAAAATACGTGAA 57.012 39.130 9.08 0.00 0.00 3.18
5216 5439 5.962433 TCCTAGGTGAGAAAATACGTGAAG 58.038 41.667 9.08 0.00 0.00 3.02
5217 5440 5.713389 TCCTAGGTGAGAAAATACGTGAAGA 59.287 40.000 9.08 0.00 0.00 2.87
5218 5441 5.805994 CCTAGGTGAGAAAATACGTGAAGAC 59.194 44.000 0.00 0.00 0.00 3.01
5219 5442 5.470047 AGGTGAGAAAATACGTGAAGACT 57.530 39.130 0.00 0.00 0.00 3.24
5220 5443 5.855045 AGGTGAGAAAATACGTGAAGACTT 58.145 37.500 0.00 0.00 0.00 3.01
5221 5444 6.289064 AGGTGAGAAAATACGTGAAGACTTT 58.711 36.000 0.00 0.00 0.00 2.66
5222 5445 6.766467 AGGTGAGAAAATACGTGAAGACTTTT 59.234 34.615 0.00 0.00 0.00 2.27
5223 5446 7.282450 AGGTGAGAAAATACGTGAAGACTTTTT 59.718 33.333 0.00 0.00 0.00 1.94
5224 5447 7.586664 GGTGAGAAAATACGTGAAGACTTTTTC 59.413 37.037 0.00 3.08 0.00 2.29
5225 5448 8.120465 GTGAGAAAATACGTGAAGACTTTTTCA 58.880 33.333 0.00 0.00 34.83 2.69
5226 5449 8.670135 TGAGAAAATACGTGAAGACTTTTTCAA 58.330 29.630 0.00 0.00 38.69 2.69
5227 5450 9.498307 GAGAAAATACGTGAAGACTTTTTCAAA 57.502 29.630 0.00 0.00 38.69 2.69
5228 5451 9.849166 AGAAAATACGTGAAGACTTTTTCAAAA 57.151 25.926 0.00 0.00 38.69 2.44
5231 5454 9.796120 AAATACGTGAAGACTTTTTCAAAATCA 57.204 25.926 0.00 0.00 38.69 2.57
5232 5455 8.782533 ATACGTGAAGACTTTTTCAAAATCAC 57.217 30.769 0.00 4.18 38.69 3.06
5233 5456 6.616947 ACGTGAAGACTTTTTCAAAATCACA 58.383 32.000 12.03 0.00 38.69 3.58
5234 5457 7.257722 ACGTGAAGACTTTTTCAAAATCACAT 58.742 30.769 12.03 0.00 38.69 3.21
5235 5458 7.220683 ACGTGAAGACTTTTTCAAAATCACATG 59.779 33.333 12.03 0.00 38.69 3.21
5236 5459 7.431960 CGTGAAGACTTTTTCAAAATCACATGA 59.568 33.333 12.03 0.00 38.69 3.07
5237 5460 8.749499 GTGAAGACTTTTTCAAAATCACATGAG 58.251 33.333 0.00 0.00 38.69 2.90
5238 5461 7.436080 TGAAGACTTTTTCAAAATCACATGAGC 59.564 33.333 0.00 0.00 34.32 4.26
5239 5462 6.808829 AGACTTTTTCAAAATCACATGAGCA 58.191 32.000 0.00 0.00 0.00 4.26
5240 5463 7.439381 AGACTTTTTCAAAATCACATGAGCAT 58.561 30.769 0.00 0.00 0.00 3.79
5241 5464 8.579006 AGACTTTTTCAAAATCACATGAGCATA 58.421 29.630 0.00 0.00 0.00 3.14
5242 5465 9.362539 GACTTTTTCAAAATCACATGAGCATAT 57.637 29.630 0.00 0.00 0.00 1.78
5243 5466 9.715121 ACTTTTTCAAAATCACATGAGCATATT 57.285 25.926 0.00 0.00 0.00 1.28
5247 5470 9.932207 TTTCAAAATCACATGAGCATATTTTCT 57.068 25.926 0.00 0.00 29.66 2.52
5256 5479 9.836076 CACATGAGCATATTTTCTAACATATGG 57.164 33.333 7.80 0.00 34.94 2.74
5257 5480 9.017509 ACATGAGCATATTTTCTAACATATGGG 57.982 33.333 7.80 0.00 34.94 4.00
5258 5481 9.234827 CATGAGCATATTTTCTAACATATGGGA 57.765 33.333 7.80 0.00 34.94 4.37
5259 5482 9.812347 ATGAGCATATTTTCTAACATATGGGAA 57.188 29.630 7.80 5.89 34.94 3.97
5260 5483 9.066892 TGAGCATATTTTCTAACATATGGGAAC 57.933 33.333 7.80 0.00 34.94 3.62
5276 5499 5.212532 TGGGAACAACCATTCTCAATTTG 57.787 39.130 0.00 0.00 36.10 2.32
5277 5500 4.653341 TGGGAACAACCATTCTCAATTTGT 59.347 37.500 0.00 0.00 36.10 2.83
5278 5501 5.130145 TGGGAACAACCATTCTCAATTTGTT 59.870 36.000 0.00 0.00 41.81 2.83
5279 5502 6.054941 GGGAACAACCATTCTCAATTTGTTT 58.945 36.000 0.00 0.00 39.79 2.83
5280 5503 6.542005 GGGAACAACCATTCTCAATTTGTTTT 59.458 34.615 0.00 0.00 39.79 2.43
5281 5504 7.066887 GGGAACAACCATTCTCAATTTGTTTTT 59.933 33.333 0.00 0.00 39.79 1.94
5282 5505 8.122330 GGAACAACCATTCTCAATTTGTTTTTC 58.878 33.333 0.00 0.00 39.79 2.29
5283 5506 8.558973 AACAACCATTCTCAATTTGTTTTTCA 57.441 26.923 0.00 0.00 37.13 2.69
5284 5507 8.558973 ACAACCATTCTCAATTTGTTTTTCAA 57.441 26.923 0.00 0.00 0.00 2.69
5315 5538 4.568152 AAAAACAAGACCATTCAGGACG 57.432 40.909 0.00 0.00 41.22 4.79
5316 5539 1.523758 AACAAGACCATTCAGGACGC 58.476 50.000 0.00 0.00 41.22 5.19
5317 5540 0.321653 ACAAGACCATTCAGGACGCC 60.322 55.000 0.00 0.00 41.22 5.68
5318 5541 0.036010 CAAGACCATTCAGGACGCCT 60.036 55.000 0.00 0.00 41.22 5.52
5319 5542 0.693049 AAGACCATTCAGGACGCCTT 59.307 50.000 0.00 0.00 41.22 4.35
5320 5543 0.693049 AGACCATTCAGGACGCCTTT 59.307 50.000 0.00 0.00 41.22 3.11
5321 5544 1.906574 AGACCATTCAGGACGCCTTTA 59.093 47.619 0.00 0.00 41.22 1.85
5322 5545 2.093447 AGACCATTCAGGACGCCTTTAG 60.093 50.000 0.00 0.00 41.22 1.85
5323 5546 1.906574 ACCATTCAGGACGCCTTTAGA 59.093 47.619 0.00 0.00 41.22 2.10
5324 5547 2.093447 ACCATTCAGGACGCCTTTAGAG 60.093 50.000 0.00 0.00 41.22 2.43
5325 5548 2.168521 CCATTCAGGACGCCTTTAGAGA 59.831 50.000 0.00 0.00 41.22 3.10
5326 5549 3.190874 CATTCAGGACGCCTTTAGAGAC 58.809 50.000 0.00 0.00 0.00 3.36
5327 5550 1.919240 TCAGGACGCCTTTAGAGACA 58.081 50.000 0.00 0.00 0.00 3.41
5328 5551 2.457598 TCAGGACGCCTTTAGAGACAT 58.542 47.619 0.00 0.00 0.00 3.06
5329 5552 3.628008 TCAGGACGCCTTTAGAGACATA 58.372 45.455 0.00 0.00 0.00 2.29
5330 5553 4.215908 TCAGGACGCCTTTAGAGACATAT 58.784 43.478 0.00 0.00 0.00 1.78
5331 5554 4.649674 TCAGGACGCCTTTAGAGACATATT 59.350 41.667 0.00 0.00 0.00 1.28
5332 5555 5.128827 TCAGGACGCCTTTAGAGACATATTT 59.871 40.000 0.00 0.00 0.00 1.40
5333 5556 5.817816 CAGGACGCCTTTAGAGACATATTTT 59.182 40.000 0.00 0.00 0.00 1.82
5334 5557 6.316390 CAGGACGCCTTTAGAGACATATTTTT 59.684 38.462 0.00 0.00 0.00 1.94
5335 5558 7.494625 CAGGACGCCTTTAGAGACATATTTTTA 59.505 37.037 0.00 0.00 0.00 1.52
5336 5559 8.211629 AGGACGCCTTTAGAGACATATTTTTAT 58.788 33.333 0.00 0.00 0.00 1.40
5337 5560 9.485206 GGACGCCTTTAGAGACATATTTTTATA 57.515 33.333 0.00 0.00 0.00 0.98
5357 5580 9.787435 TTTTATAGAAGAAGTCTTTAAGCACCA 57.213 29.630 0.00 0.00 37.84 4.17
5358 5581 9.959721 TTTATAGAAGAAGTCTTTAAGCACCAT 57.040 29.630 0.00 0.00 37.84 3.55
5359 5582 7.856145 ATAGAAGAAGTCTTTAAGCACCATG 57.144 36.000 0.00 0.00 37.84 3.66
5360 5583 4.457257 AGAAGAAGTCTTTAAGCACCATGC 59.543 41.667 0.00 0.00 39.01 4.06
5361 5584 3.189287 AAGAAGTCTTTAAGCACCATGCG 59.811 43.478 0.00 0.00 39.99 4.73
5362 5585 6.386800 AAGAAGTCTTTAAGCACCATGCGC 62.387 45.833 0.00 0.00 39.99 6.09
5369 5592 3.204827 GCACCATGCGCCACTAGG 61.205 66.667 4.18 1.61 31.71 3.02
5379 5602 3.449227 CCACTAGGCCGTGAGCGA 61.449 66.667 11.94 0.00 45.17 4.93
5380 5603 2.103143 CACTAGGCCGTGAGCGAG 59.897 66.667 4.88 0.00 45.17 5.03
5381 5604 2.045242 ACTAGGCCGTGAGCGAGA 60.045 61.111 0.00 0.00 45.17 4.04
5382 5605 2.115911 ACTAGGCCGTGAGCGAGAG 61.116 63.158 0.00 0.00 45.17 3.20
5383 5606 2.045242 TAGGCCGTGAGCGAGAGT 60.045 61.111 0.00 0.00 45.17 3.24
5384 5607 2.329678 CTAGGCCGTGAGCGAGAGTG 62.330 65.000 0.00 0.00 45.17 3.51
5385 5608 4.803426 GGCCGTGAGCGAGAGTGG 62.803 72.222 0.00 0.00 45.17 4.00
5386 5609 4.803426 GCCGTGAGCGAGAGTGGG 62.803 72.222 0.00 0.00 41.33 4.61
5387 5610 4.803426 CCGTGAGCGAGAGTGGGC 62.803 72.222 0.00 0.00 41.33 5.36
5388 5611 3.753434 CGTGAGCGAGAGTGGGCT 61.753 66.667 0.00 0.00 43.42 5.19
5389 5612 2.407428 CGTGAGCGAGAGTGGGCTA 61.407 63.158 0.00 0.00 40.16 3.93
5390 5613 1.435515 GTGAGCGAGAGTGGGCTAG 59.564 63.158 0.00 0.00 40.16 3.42
5391 5614 2.415426 GAGCGAGAGTGGGCTAGC 59.585 66.667 6.04 6.04 40.16 3.42
5392 5615 2.043450 AGCGAGAGTGGGCTAGCT 60.043 61.111 15.72 0.00 41.18 3.32
5393 5616 1.671901 GAGCGAGAGTGGGCTAGCTT 61.672 60.000 15.72 0.00 45.05 3.74
5394 5617 1.520342 GCGAGAGTGGGCTAGCTTG 60.520 63.158 15.72 0.00 34.27 4.01
5395 5618 1.520342 CGAGAGTGGGCTAGCTTGC 60.520 63.158 15.72 12.01 0.00 4.01
5396 5619 1.904032 GAGAGTGGGCTAGCTTGCT 59.096 57.895 19.45 9.75 0.00 3.91
5397 5620 0.179086 GAGAGTGGGCTAGCTTGCTC 60.179 60.000 19.45 16.66 0.00 4.26
5398 5621 1.153269 GAGTGGGCTAGCTTGCTCC 60.153 63.158 17.60 17.04 31.16 4.70
5399 5622 1.614824 AGTGGGCTAGCTTGCTCCT 60.615 57.895 17.60 10.90 31.16 3.69
5400 5623 1.204113 AGTGGGCTAGCTTGCTCCTT 61.204 55.000 17.60 2.56 31.16 3.36
5401 5624 1.028868 GTGGGCTAGCTTGCTCCTTG 61.029 60.000 17.60 0.00 31.16 3.61
5402 5625 2.117779 GGGCTAGCTTGCTCCTTGC 61.118 63.158 19.45 1.88 43.25 4.01
5403 5626 2.467826 GGCTAGCTTGCTCCTTGCG 61.468 63.158 19.45 0.00 46.63 4.85
5404 5627 1.448540 GCTAGCTTGCTCCTTGCGA 60.449 57.895 13.17 0.00 46.63 5.10
5412 5635 2.107953 CTCCTTGCGAGCCTAGCC 59.892 66.667 0.00 0.00 0.00 3.93
5413 5636 2.683572 TCCTTGCGAGCCTAGCCA 60.684 61.111 0.00 0.00 0.00 4.75
5414 5637 2.244117 CTCCTTGCGAGCCTAGCCAA 62.244 60.000 0.00 0.00 0.00 4.52
5415 5638 2.109126 CCTTGCGAGCCTAGCCAAC 61.109 63.158 0.00 0.00 0.00 3.77
5416 5639 1.375908 CTTGCGAGCCTAGCCAACA 60.376 57.895 0.00 0.00 0.00 3.33
5417 5640 1.364626 CTTGCGAGCCTAGCCAACAG 61.365 60.000 0.00 0.00 0.00 3.16
5418 5641 1.826340 TTGCGAGCCTAGCCAACAGA 61.826 55.000 0.00 0.00 0.00 3.41
5419 5642 1.520342 GCGAGCCTAGCCAACAGAG 60.520 63.158 0.00 0.00 0.00 3.35
5420 5643 1.893786 CGAGCCTAGCCAACAGAGT 59.106 57.895 0.00 0.00 0.00 3.24
5421 5644 0.459237 CGAGCCTAGCCAACAGAGTG 60.459 60.000 0.00 0.00 0.00 3.51
5422 5645 0.610687 GAGCCTAGCCAACAGAGTGT 59.389 55.000 0.00 0.00 0.00 3.55
5423 5646 0.610687 AGCCTAGCCAACAGAGTGTC 59.389 55.000 0.00 0.00 0.00 3.67
5424 5647 0.321671 GCCTAGCCAACAGAGTGTCA 59.678 55.000 0.00 0.00 0.00 3.58
5425 5648 1.941668 GCCTAGCCAACAGAGTGTCAC 60.942 57.143 0.00 0.00 0.00 3.67
5426 5649 1.338200 CCTAGCCAACAGAGTGTCACC 60.338 57.143 0.00 0.00 0.00 4.02
5427 5650 0.685097 TAGCCAACAGAGTGTCACCC 59.315 55.000 0.00 0.00 0.00 4.61
5428 5651 1.056700 AGCCAACAGAGTGTCACCCT 61.057 55.000 0.00 0.00 0.00 4.34
5429 5652 0.886490 GCCAACAGAGTGTCACCCTG 60.886 60.000 12.58 12.58 0.00 4.45
5430 5653 0.469917 CCAACAGAGTGTCACCCTGT 59.530 55.000 13.92 13.92 42.34 4.00
5432 5655 2.213499 CAACAGAGTGTCACCCTGTTC 58.787 52.381 25.12 5.59 45.93 3.18
5433 5656 1.794714 ACAGAGTGTCACCCTGTTCT 58.205 50.000 13.92 0.26 37.86 3.01
5434 5657 1.689273 ACAGAGTGTCACCCTGTTCTC 59.311 52.381 13.92 0.00 37.86 2.87
5435 5658 1.688735 CAGAGTGTCACCCTGTTCTCA 59.311 52.381 6.34 0.00 0.00 3.27
5436 5659 2.103094 CAGAGTGTCACCCTGTTCTCAA 59.897 50.000 6.34 0.00 0.00 3.02
5437 5660 2.771943 AGAGTGTCACCCTGTTCTCAAA 59.228 45.455 0.00 0.00 0.00 2.69
5438 5661 3.199946 AGAGTGTCACCCTGTTCTCAAAA 59.800 43.478 0.00 0.00 0.00 2.44
5439 5662 4.137543 GAGTGTCACCCTGTTCTCAAAAT 58.862 43.478 0.00 0.00 0.00 1.82
5440 5663 4.536765 AGTGTCACCCTGTTCTCAAAATT 58.463 39.130 0.00 0.00 0.00 1.82
5441 5664 4.339247 AGTGTCACCCTGTTCTCAAAATTG 59.661 41.667 0.00 0.00 0.00 2.32
5442 5665 4.338118 GTGTCACCCTGTTCTCAAAATTGA 59.662 41.667 0.00 0.00 35.57 2.57
5458 5681 8.821147 TCAAAATTGAGAATGAACATTTCTGG 57.179 30.769 1.56 0.00 32.50 3.86
5459 5682 8.640651 TCAAAATTGAGAATGAACATTTCTGGA 58.359 29.630 1.56 0.00 32.50 3.86
5460 5683 9.263538 CAAAATTGAGAATGAACATTTCTGGAA 57.736 29.630 1.56 0.00 0.00 3.53
5461 5684 9.485206 AAAATTGAGAATGAACATTTCTGGAAG 57.515 29.630 1.56 0.00 0.00 3.46
5462 5685 7.771927 ATTGAGAATGAACATTTCTGGAAGT 57.228 32.000 1.56 0.00 33.76 3.01
5463 5686 7.587037 TTGAGAATGAACATTTCTGGAAGTT 57.413 32.000 1.56 0.00 33.76 2.66
5464 5687 7.587037 TGAGAATGAACATTTCTGGAAGTTT 57.413 32.000 1.56 0.00 33.76 2.66
5465 5688 8.010733 TGAGAATGAACATTTCTGGAAGTTTT 57.989 30.769 1.56 0.00 33.76 2.43
5466 5689 9.130661 TGAGAATGAACATTTCTGGAAGTTTTA 57.869 29.630 1.56 0.00 33.76 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.040339 ACACTTTGGCCCAAAAATAAGAGG 59.960 41.667 10.66 0.00 32.75 3.69
1 2 4.990426 CACACTTTGGCCCAAAAATAAGAG 59.010 41.667 10.66 0.00 32.75 2.85
2 3 4.651503 TCACACTTTGGCCCAAAAATAAGA 59.348 37.500 10.66 2.55 32.75 2.10
3 4 4.749598 GTCACACTTTGGCCCAAAAATAAG 59.250 41.667 10.66 0.15 32.75 1.73
4 5 4.443598 GGTCACACTTTGGCCCAAAAATAA 60.444 41.667 10.66 0.00 45.40 1.40
5 6 3.070302 GGTCACACTTTGGCCCAAAAATA 59.930 43.478 10.66 0.00 45.40 1.40
6 7 2.158827 GGTCACACTTTGGCCCAAAAAT 60.159 45.455 10.66 0.00 45.40 1.82
7 8 1.208293 GGTCACACTTTGGCCCAAAAA 59.792 47.619 10.66 0.00 45.40 1.94
8 9 0.827368 GGTCACACTTTGGCCCAAAA 59.173 50.000 10.66 0.00 45.40 2.44
9 10 2.510664 GGTCACACTTTGGCCCAAA 58.489 52.632 8.93 8.93 45.40 3.28
10 11 4.268720 GGTCACACTTTGGCCCAA 57.731 55.556 0.00 0.00 45.40 4.12
14 15 6.151144 AGTTAGATTTATGGTCACACTTTGGC 59.849 38.462 0.00 0.00 0.00 4.52
15 16 7.687941 AGTTAGATTTATGGTCACACTTTGG 57.312 36.000 0.00 0.00 0.00 3.28
26 27 9.672673 CCCATGGAGTATTAGTTAGATTTATGG 57.327 37.037 15.22 0.00 0.00 2.74
45 46 8.736097 ATGTACTTTATATGTACTCCCATGGA 57.264 34.615 15.22 0.00 40.44 3.41
46 47 9.436957 GAATGTACTTTATATGTACTCCCATGG 57.563 37.037 4.14 4.14 40.44 3.66
47 48 9.996554 TGAATGTACTTTATATGTACTCCCATG 57.003 33.333 13.92 0.00 40.44 3.66
63 64 9.474920 CATGGTATGTTTGTTTTGAATGTACTT 57.525 29.630 0.00 0.00 0.00 2.24
64 65 8.087750 CCATGGTATGTTTGTTTTGAATGTACT 58.912 33.333 2.57 0.00 0.00 2.73
65 66 7.330700 CCCATGGTATGTTTGTTTTGAATGTAC 59.669 37.037 11.73 0.00 0.00 2.90
66 67 7.233553 TCCCATGGTATGTTTGTTTTGAATGTA 59.766 33.333 11.73 0.00 0.00 2.29
67 68 6.042552 TCCCATGGTATGTTTGTTTTGAATGT 59.957 34.615 11.73 0.00 0.00 2.71
68 69 6.462500 TCCCATGGTATGTTTGTTTTGAATG 58.538 36.000 11.73 0.00 0.00 2.67
69 70 6.496565 TCTCCCATGGTATGTTTGTTTTGAAT 59.503 34.615 11.73 0.00 0.00 2.57
70 71 5.835819 TCTCCCATGGTATGTTTGTTTTGAA 59.164 36.000 11.73 0.00 0.00 2.69
71 72 5.242838 GTCTCCCATGGTATGTTTGTTTTGA 59.757 40.000 11.73 0.00 0.00 2.69
72 73 5.469479 GTCTCCCATGGTATGTTTGTTTTG 58.531 41.667 11.73 0.00 0.00 2.44
73 74 4.526650 GGTCTCCCATGGTATGTTTGTTTT 59.473 41.667 11.73 0.00 0.00 2.43
74 75 4.086457 GGTCTCCCATGGTATGTTTGTTT 58.914 43.478 11.73 0.00 0.00 2.83
75 76 3.333680 AGGTCTCCCATGGTATGTTTGTT 59.666 43.478 11.73 0.00 0.00 2.83
76 77 2.919602 AGGTCTCCCATGGTATGTTTGT 59.080 45.455 11.73 0.00 0.00 2.83
77 78 3.652057 AGGTCTCCCATGGTATGTTTG 57.348 47.619 11.73 0.00 0.00 2.93
78 79 3.852578 AGAAGGTCTCCCATGGTATGTTT 59.147 43.478 11.73 0.00 0.00 2.83
79 80 3.456277 GAGAAGGTCTCCCATGGTATGTT 59.544 47.826 11.73 0.00 37.55 2.71
80 81 3.041946 GAGAAGGTCTCCCATGGTATGT 58.958 50.000 11.73 0.00 37.55 2.29
81 82 3.041211 TGAGAAGGTCTCCCATGGTATG 58.959 50.000 11.73 0.00 42.73 2.39
82 83 3.421394 TGAGAAGGTCTCCCATGGTAT 57.579 47.619 11.73 0.00 42.73 2.73
83 84 2.940514 TGAGAAGGTCTCCCATGGTA 57.059 50.000 11.73 0.00 42.73 3.25
84 85 2.044793 TTGAGAAGGTCTCCCATGGT 57.955 50.000 11.73 0.00 42.73 3.55
85 86 3.659183 ATTTGAGAAGGTCTCCCATGG 57.341 47.619 4.14 4.14 42.73 3.66
86 87 5.102953 TGTATTTGAGAAGGTCTCCCATG 57.897 43.478 2.91 0.00 42.73 3.66
87 88 5.779241 TTGTATTTGAGAAGGTCTCCCAT 57.221 39.130 2.91 0.00 42.73 4.00
88 89 5.576563 TTTGTATTTGAGAAGGTCTCCCA 57.423 39.130 2.91 0.00 42.73 4.37
89 90 5.590663 GGATTTGTATTTGAGAAGGTCTCCC 59.409 44.000 2.91 0.00 42.73 4.30
90 91 6.180472 TGGATTTGTATTTGAGAAGGTCTCC 58.820 40.000 2.91 0.00 42.73 3.71
91 92 7.174946 TGTTGGATTTGTATTTGAGAAGGTCTC 59.825 37.037 0.00 0.00 43.65 3.36
92 93 7.004086 TGTTGGATTTGTATTTGAGAAGGTCT 58.996 34.615 0.00 0.00 0.00 3.85
93 94 7.214467 TGTTGGATTTGTATTTGAGAAGGTC 57.786 36.000 0.00 0.00 0.00 3.85
94 95 7.781324 ATGTTGGATTTGTATTTGAGAAGGT 57.219 32.000 0.00 0.00 0.00 3.50
145 146 9.866655 TTTGGCCATCTATATGACTAGAAAAAT 57.133 29.630 6.09 0.00 34.84 1.82
146 147 9.693739 TTTTGGCCATCTATATGACTAGAAAAA 57.306 29.630 6.09 0.00 34.84 1.94
147 148 9.866655 ATTTTGGCCATCTATATGACTAGAAAA 57.133 29.630 6.09 0.00 34.84 2.29
148 149 9.866655 AATTTTGGCCATCTATATGACTAGAAA 57.133 29.630 6.09 0.00 34.84 2.52
149 150 9.866655 AAATTTTGGCCATCTATATGACTAGAA 57.133 29.630 6.09 0.00 34.84 2.10
150 151 9.288576 CAAATTTTGGCCATCTATATGACTAGA 57.711 33.333 6.09 0.00 34.84 2.43
151 152 9.288576 TCAAATTTTGGCCATCTATATGACTAG 57.711 33.333 6.09 0.00 34.84 2.57
152 153 9.812347 ATCAAATTTTGGCCATCTATATGACTA 57.188 29.630 6.09 0.00 34.84 2.59
153 154 8.716674 ATCAAATTTTGGCCATCTATATGACT 57.283 30.769 6.09 0.00 34.84 3.41
154 155 9.199982 CAATCAAATTTTGGCCATCTATATGAC 57.800 33.333 6.09 0.00 34.84 3.06
155 156 9.145442 TCAATCAAATTTTGGCCATCTATATGA 57.855 29.630 6.09 8.20 34.84 2.15
156 157 9.767228 TTCAATCAAATTTTGGCCATCTATATG 57.233 29.630 6.09 2.15 0.00 1.78
168 169 9.282569 TCCCCTTGTATTTTCAATCAAATTTTG 57.717 29.630 2.59 2.59 0.00 2.44
212 214 7.380602 ACGTGTGTTACTACTTGTTACTCAATC 59.619 37.037 0.00 0.00 34.81 2.67
214 216 6.473131 CACGTGTGTTACTACTTGTTACTCAA 59.527 38.462 7.58 0.00 34.81 3.02
215 217 5.972973 CACGTGTGTTACTACTTGTTACTCA 59.027 40.000 7.58 0.00 31.93 3.41
265 269 3.251004 GCCTCGCCCTTTGAGTATTTATG 59.749 47.826 0.00 0.00 0.00 1.90
416 420 2.441001 CAACCTTCTCCCTATCATGGCT 59.559 50.000 0.00 0.00 0.00 4.75
470 474 5.758296 AGTGCGTCTTTTTCTCATCTTACAA 59.242 36.000 0.00 0.00 0.00 2.41
496 500 2.349060 CCTTCGTCTTCTATCTCTCGCG 60.349 54.545 0.00 0.00 0.00 5.87
506 510 3.768878 TCCTTTCTCTCCTTCGTCTTCT 58.231 45.455 0.00 0.00 0.00 2.85
534 538 1.537202 GCTCTTGCTGGTACAACCTTG 59.463 52.381 0.00 0.00 39.58 3.61
546 550 2.356313 CCGACACGTGCTCTTGCT 60.356 61.111 17.22 0.00 40.48 3.91
563 567 4.816392 ACGGAAATAAACCAATCCAAAGC 58.184 39.130 0.00 0.00 32.08 3.51
629 634 6.594788 ATGGTTTGAGTGTGCTAAATGAAT 57.405 33.333 0.00 0.00 0.00 2.57
630 635 7.517614 TTATGGTTTGAGTGTGCTAAATGAA 57.482 32.000 0.00 0.00 0.00 2.57
638 646 5.181690 TCTTGTTTATGGTTTGAGTGTGC 57.818 39.130 0.00 0.00 0.00 4.57
641 649 8.479280 CGAAAAATCTTGTTTATGGTTTGAGTG 58.521 33.333 0.00 0.00 0.00 3.51
666 675 3.365969 GCCTTTAATCACTGTTTGACCCG 60.366 47.826 0.00 0.00 36.92 5.28
690 705 9.862585 CTAAATGAATGTTAAAAGTTTTGGTGC 57.137 29.630 11.18 0.00 0.00 5.01
719 734 9.925268 CCTTCATTCAAAAGAAAAAGACAAATG 57.075 29.630 0.00 0.00 0.00 2.32
720 735 8.615211 GCCTTCATTCAAAAGAAAAAGACAAAT 58.385 29.630 0.00 0.00 0.00 2.32
721 736 7.065683 GGCCTTCATTCAAAAGAAAAAGACAAA 59.934 33.333 0.00 0.00 0.00 2.83
722 737 6.538381 GGCCTTCATTCAAAAGAAAAAGACAA 59.462 34.615 0.00 0.00 0.00 3.18
723 738 6.048509 GGCCTTCATTCAAAAGAAAAAGACA 58.951 36.000 0.00 0.00 0.00 3.41
724 739 6.048509 TGGCCTTCATTCAAAAGAAAAAGAC 58.951 36.000 3.32 0.00 0.00 3.01
725 740 6.232581 TGGCCTTCATTCAAAAGAAAAAGA 57.767 33.333 3.32 0.00 0.00 2.52
726 741 6.707161 TGATGGCCTTCATTCAAAAGAAAAAG 59.293 34.615 17.00 0.00 35.97 2.27
727 742 6.590068 TGATGGCCTTCATTCAAAAGAAAAA 58.410 32.000 17.00 0.00 35.97 1.94
728 743 6.172136 TGATGGCCTTCATTCAAAAGAAAA 57.828 33.333 17.00 0.00 35.97 2.29
729 744 5.804944 TGATGGCCTTCATTCAAAAGAAA 57.195 34.783 17.00 0.00 35.97 2.52
730 745 6.664816 ACTATGATGGCCTTCATTCAAAAGAA 59.335 34.615 32.22 15.31 37.51 2.52
731 746 6.189859 ACTATGATGGCCTTCATTCAAAAGA 58.810 36.000 32.22 15.92 37.51 2.52
732 747 6.461110 ACTATGATGGCCTTCATTCAAAAG 57.539 37.500 32.22 25.22 37.51 2.27
740 755 7.125811 AGAGTAAAGTAACTATGATGGCCTTCA 59.874 37.037 22.42 22.42 0.00 3.02
771 786 9.846248 AGAATGTATGCTTGTCAAAAATTAGAC 57.154 29.630 0.00 0.00 35.37 2.59
783 798 9.726438 ACTTTAGAGTTTAGAATGTATGCTTGT 57.274 29.630 0.00 0.00 29.87 3.16
811 826 1.188863 AGATGGGAAACTTGGCATGC 58.811 50.000 9.90 9.90 0.00 4.06
839 854 1.354705 GTAAGGCAACCCCCTCTCTTT 59.645 52.381 0.00 0.00 32.93 2.52
930 945 1.764454 GTGGGCTGGGGTTTTTGGT 60.764 57.895 0.00 0.00 0.00 3.67
1372 1400 3.474904 CGCACGGACGAATTCGCA 61.475 61.111 27.03 0.00 44.43 5.10
1410 1448 4.657824 ACCAAGGACACGGACGCG 62.658 66.667 3.53 3.53 0.00 6.01
1432 1470 2.350895 CGCTCCAATCACACCCCA 59.649 61.111 0.00 0.00 0.00 4.96
1470 1510 2.102357 GAGAAGCGGCATCGTCGA 59.898 61.111 1.45 0.00 38.89 4.20
1483 1523 3.812019 GGCGACGAGAGCCGAGAA 61.812 66.667 0.00 0.00 45.58 2.87
1495 1535 3.420214 TAAGATCACCGGCGGCGAC 62.420 63.158 34.49 16.25 0.00 5.19
1496 1536 3.142162 TAAGATCACCGGCGGCGA 61.142 61.111 34.49 24.23 0.00 5.54
1497 1537 2.960129 GTAAGATCACCGGCGGCG 60.960 66.667 28.71 26.12 0.00 6.46
1498 1538 1.222115 GATGTAAGATCACCGGCGGC 61.222 60.000 28.71 9.88 0.00 6.53
1499 1539 0.389391 AGATGTAAGATCACCGGCGG 59.611 55.000 27.06 27.06 0.00 6.13
1500 1540 3.577649 ATAGATGTAAGATCACCGGCG 57.422 47.619 0.00 0.00 0.00 6.46
1501 1541 3.433615 GCAATAGATGTAAGATCACCGGC 59.566 47.826 0.00 0.00 0.00 6.13
1502 1542 4.631131 TGCAATAGATGTAAGATCACCGG 58.369 43.478 0.00 0.00 0.00 5.28
1513 1553 3.002791 CACCACGAACTGCAATAGATGT 58.997 45.455 0.00 0.00 0.00 3.06
1514 1554 3.261580 TCACCACGAACTGCAATAGATG 58.738 45.455 0.00 0.00 0.00 2.90
1519 1559 3.935203 CTCTAATCACCACGAACTGCAAT 59.065 43.478 0.00 0.00 0.00 3.56
1521 1561 2.299013 ACTCTAATCACCACGAACTGCA 59.701 45.455 0.00 0.00 0.00 4.41
1524 1564 2.233922 CCCACTCTAATCACCACGAACT 59.766 50.000 0.00 0.00 0.00 3.01
1528 1568 1.825474 AGACCCACTCTAATCACCACG 59.175 52.381 0.00 0.00 0.00 4.94
1616 1707 3.862267 CAGAGAATCCTAACACGCAAGAG 59.138 47.826 0.00 0.00 36.65 2.85
1877 1971 5.646577 AAGCACACTAGTTACCAGTCTAG 57.353 43.478 0.00 0.00 39.37 2.43
1878 1972 5.537295 TCAAAGCACACTAGTTACCAGTCTA 59.463 40.000 0.00 0.00 0.00 2.59
1879 1973 4.344102 TCAAAGCACACTAGTTACCAGTCT 59.656 41.667 0.00 0.00 0.00 3.24
1961 2055 6.528537 AAATATAGCAAATGGTGAAGCACA 57.471 33.333 0.00 0.00 35.86 4.57
1962 2056 7.260603 AGAAAATATAGCAAATGGTGAAGCAC 58.739 34.615 0.00 0.00 0.00 4.40
2002 2096 8.729756 CACAATAACATCTGGAATTTAGACACA 58.270 33.333 0.00 0.00 0.00 3.72
2127 2221 3.543680 ACCAAACATCGATCCCAGTAG 57.456 47.619 0.00 0.00 0.00 2.57
2131 2225 2.039746 AGTGAACCAAACATCGATCCCA 59.960 45.455 0.00 0.00 0.00 4.37
2150 2244 2.762327 CAGCCTGCCAAATTTATCCAGT 59.238 45.455 0.00 0.00 0.00 4.00
2163 2257 1.512694 GGCATAAACACAGCCTGCC 59.487 57.895 0.00 0.00 44.92 4.85
2164 2258 1.137404 CGGCATAAACACAGCCTGC 59.863 57.895 0.00 0.00 46.14 4.85
2219 2313 0.394488 TGACGCCACCCTGTCAAAAA 60.394 50.000 0.00 0.00 41.82 1.94
2450 2551 6.827762 TCCAAAAATTCAAACCTGCATTTCTT 59.172 30.769 0.00 0.00 28.58 2.52
2487 2588 2.621929 CCCCTATATAGCTCGCCTCAGT 60.622 54.545 4.04 0.00 0.00 3.41
2489 2590 1.358103 ACCCCTATATAGCTCGCCTCA 59.642 52.381 4.04 0.00 0.00 3.86
2495 2596 5.428184 AGCAAATCACCCCTATATAGCTC 57.572 43.478 4.04 0.00 0.00 4.09
2514 2617 2.875296 AGATAACAGGCCACAAAAGCA 58.125 42.857 5.01 0.00 0.00 3.91
2589 2692 3.304257 CCAAACAGACAACTGAGACATGC 60.304 47.826 0.00 0.00 46.03 4.06
2747 2851 4.467082 TGCATATTTCTGACCTGCCAAATT 59.533 37.500 0.00 0.00 31.89 1.82
2859 2963 5.922053 CTGAAAGGAGGATATGATGTGACA 58.078 41.667 0.00 0.00 0.00 3.58
3037 3141 6.839134 TCAGCAGGACTAGGATATTTAGACAA 59.161 38.462 0.00 0.00 0.00 3.18
3039 3143 6.683715 GTCAGCAGGACTAGGATATTTAGAC 58.316 44.000 0.00 0.00 43.46 2.59
3040 3144 6.902771 GTCAGCAGGACTAGGATATTTAGA 57.097 41.667 0.00 0.00 43.46 2.10
3130 3281 5.935945 TGATTATCTTTTAATCCCGCTCCA 58.064 37.500 0.00 0.00 34.06 3.86
3131 3282 6.877611 TTGATTATCTTTTAATCCCGCTCC 57.122 37.500 0.00 0.00 34.06 4.70
3132 3283 7.327032 GCATTTGATTATCTTTTAATCCCGCTC 59.673 37.037 0.00 0.00 34.06 5.03
3133 3284 7.147976 GCATTTGATTATCTTTTAATCCCGCT 58.852 34.615 0.00 0.00 34.06 5.52
3134 3285 6.366061 GGCATTTGATTATCTTTTAATCCCGC 59.634 38.462 0.00 0.00 34.06 6.13
3135 3286 7.382218 GTGGCATTTGATTATCTTTTAATCCCG 59.618 37.037 0.00 0.00 34.06 5.14
3136 3287 8.424133 AGTGGCATTTGATTATCTTTTAATCCC 58.576 33.333 0.00 0.00 34.06 3.85
3137 3288 9.468532 GAGTGGCATTTGATTATCTTTTAATCC 57.531 33.333 0.00 0.00 34.06 3.01
3140 3291 9.859427 CTTGAGTGGCATTTGATTATCTTTTAA 57.141 29.630 0.00 0.00 0.00 1.52
3141 3292 9.241919 TCTTGAGTGGCATTTGATTATCTTTTA 57.758 29.630 0.00 0.00 0.00 1.52
3142 3293 8.125978 TCTTGAGTGGCATTTGATTATCTTTT 57.874 30.769 0.00 0.00 0.00 2.27
3143 3294 7.707624 TCTTGAGTGGCATTTGATTATCTTT 57.292 32.000 0.00 0.00 0.00 2.52
3144 3295 7.707624 TTCTTGAGTGGCATTTGATTATCTT 57.292 32.000 0.00 0.00 0.00 2.40
3145 3296 7.893124 ATTCTTGAGTGGCATTTGATTATCT 57.107 32.000 0.00 0.00 0.00 1.98
3146 3297 9.837525 GATATTCTTGAGTGGCATTTGATTATC 57.162 33.333 0.00 0.36 0.00 1.75
3147 3298 9.584008 AGATATTCTTGAGTGGCATTTGATTAT 57.416 29.630 0.00 0.00 0.00 1.28
3148 3299 8.843262 CAGATATTCTTGAGTGGCATTTGATTA 58.157 33.333 0.00 0.00 0.00 1.75
3149 3300 7.201884 CCAGATATTCTTGAGTGGCATTTGATT 60.202 37.037 0.00 0.00 0.00 2.57
3150 3301 6.264744 CCAGATATTCTTGAGTGGCATTTGAT 59.735 38.462 0.00 0.00 0.00 2.57
3151 3302 5.591472 CCAGATATTCTTGAGTGGCATTTGA 59.409 40.000 0.00 0.00 0.00 2.69
3152 3303 5.828747 CCAGATATTCTTGAGTGGCATTTG 58.171 41.667 0.00 0.00 0.00 2.32
3158 3309 3.875727 CAGTGCCAGATATTCTTGAGTGG 59.124 47.826 0.00 0.00 0.00 4.00
3159 3310 3.311871 GCAGTGCCAGATATTCTTGAGTG 59.688 47.826 2.85 0.00 0.00 3.51
3160 3311 3.199508 AGCAGTGCCAGATATTCTTGAGT 59.800 43.478 12.58 0.00 0.00 3.41
3161 3312 3.806380 AGCAGTGCCAGATATTCTTGAG 58.194 45.455 12.58 0.00 0.00 3.02
3162 3313 3.920231 AGCAGTGCCAGATATTCTTGA 57.080 42.857 12.58 0.00 0.00 3.02
3163 3314 4.388165 CGATAGCAGTGCCAGATATTCTTG 59.612 45.833 12.58 0.00 0.00 3.02
3164 3315 4.564041 CGATAGCAGTGCCAGATATTCTT 58.436 43.478 12.58 0.00 0.00 2.52
3165 3316 4.185467 CGATAGCAGTGCCAGATATTCT 57.815 45.455 12.58 0.00 0.00 2.40
3258 3409 4.393062 GCAACAGTGTTGCTCAGTATATGT 59.607 41.667 40.63 1.11 41.87 2.29
3259 3410 4.901814 GCAACAGTGTTGCTCAGTATATG 58.098 43.478 40.63 14.78 41.87 1.78
3269 3420 0.233332 GACTCGAGCAACAGTGTTGC 59.767 55.000 41.06 41.06 45.22 4.17
3270 3421 1.524355 CAGACTCGAGCAACAGTGTTG 59.476 52.381 28.10 28.10 0.00 3.33
3271 3422 1.137086 ACAGACTCGAGCAACAGTGTT 59.863 47.619 13.61 1.64 0.00 3.32
3272 3423 0.747255 ACAGACTCGAGCAACAGTGT 59.253 50.000 13.61 4.30 0.00 3.55
3364 3531 4.336532 AACACGTTTCAGCGGATAATTC 57.663 40.909 0.00 0.00 35.98 2.17
4013 4180 9.842775 AAAGATCTTCAGAAGCATCATGTAATA 57.157 29.630 8.78 0.00 0.00 0.98
4078 4249 5.305569 GCATTGTGCGAAATGATAACATG 57.694 39.130 13.69 0.00 39.46 3.21
4412 4588 6.013293 GGTAGCTAAATGGGAATAGAGTGGAT 60.013 42.308 0.00 0.00 0.00 3.41
4587 4770 4.911390 ACTGTTAATTCCTCTTCCACTGG 58.089 43.478 0.00 0.00 0.00 4.00
4745 4929 1.414919 GCCCATCACCGGTAACTATGA 59.585 52.381 6.87 0.00 33.30 2.15
4892 5076 2.100584 GACAGACTCTATGCCCACTCTG 59.899 54.545 0.00 0.00 32.94 3.35
4908 5094 4.922206 ACCTAAATGCATTTCTGGACAGA 58.078 39.130 32.84 15.47 35.27 3.41
4941 5127 7.331026 TCTACAGATTTAGGTTTCAGGACATG 58.669 38.462 0.00 0.00 0.00 3.21
4942 5128 7.496346 TCTACAGATTTAGGTTTCAGGACAT 57.504 36.000 0.00 0.00 0.00 3.06
4954 5140 7.065085 CAGAACAACCCACATCTACAGATTTAG 59.935 40.741 0.00 0.00 31.21 1.85
4963 5149 3.137544 ACCAACAGAACAACCCACATCTA 59.862 43.478 0.00 0.00 0.00 1.98
5016 5234 6.604396 TCATGATCCAAACTCAAGCATGTATT 59.396 34.615 0.00 0.00 34.75 1.89
5068 5291 3.744214 GCTTATGTCCATCAATCACCGGA 60.744 47.826 9.46 0.00 0.00 5.14
5069 5292 2.549754 GCTTATGTCCATCAATCACCGG 59.450 50.000 0.00 0.00 0.00 5.28
5070 5293 3.205338 TGCTTATGTCCATCAATCACCG 58.795 45.455 0.00 0.00 0.00 4.94
5071 5294 4.202441 ACTGCTTATGTCCATCAATCACC 58.798 43.478 0.00 0.00 0.00 4.02
5072 5295 4.877823 TGACTGCTTATGTCCATCAATCAC 59.122 41.667 0.00 0.00 33.83 3.06
5073 5296 5.101648 TGACTGCTTATGTCCATCAATCA 57.898 39.130 0.00 0.00 33.83 2.57
5074 5297 5.363101 TCTGACTGCTTATGTCCATCAATC 58.637 41.667 0.00 0.00 33.83 2.67
5075 5298 5.363562 TCTGACTGCTTATGTCCATCAAT 57.636 39.130 0.00 0.00 33.83 2.57
5076 5299 4.824479 TCTGACTGCTTATGTCCATCAA 57.176 40.909 0.00 0.00 33.83 2.57
5077 5300 6.098838 AGTTATCTGACTGCTTATGTCCATCA 59.901 38.462 0.00 0.00 33.83 3.07
5078 5301 6.520272 AGTTATCTGACTGCTTATGTCCATC 58.480 40.000 0.00 0.00 33.83 3.51
5079 5302 6.491714 AGTTATCTGACTGCTTATGTCCAT 57.508 37.500 0.00 0.00 33.83 3.41
5080 5303 5.939764 AGTTATCTGACTGCTTATGTCCA 57.060 39.130 0.00 0.00 33.83 4.02
5081 5304 5.923684 GCTAGTTATCTGACTGCTTATGTCC 59.076 44.000 0.00 0.00 33.83 4.02
5082 5305 6.507900 TGCTAGTTATCTGACTGCTTATGTC 58.492 40.000 0.00 0.00 35.21 3.06
5083 5306 6.471233 TGCTAGTTATCTGACTGCTTATGT 57.529 37.500 0.00 0.00 0.00 2.29
5084 5307 5.404968 GCTGCTAGTTATCTGACTGCTTATG 59.595 44.000 0.00 0.00 0.00 1.90
5085 5308 5.510520 GGCTGCTAGTTATCTGACTGCTTAT 60.511 44.000 0.00 0.00 0.00 1.73
5086 5309 4.202161 GGCTGCTAGTTATCTGACTGCTTA 60.202 45.833 0.00 0.00 0.00 3.09
5087 5310 3.431486 GGCTGCTAGTTATCTGACTGCTT 60.431 47.826 0.00 0.00 0.00 3.91
5088 5311 2.102252 GGCTGCTAGTTATCTGACTGCT 59.898 50.000 0.00 0.00 0.00 4.24
5089 5312 2.102252 AGGCTGCTAGTTATCTGACTGC 59.898 50.000 0.00 0.00 0.00 4.40
5090 5313 4.339530 TGTAGGCTGCTAGTTATCTGACTG 59.660 45.833 3.77 0.00 0.00 3.51
5091 5314 4.339814 GTGTAGGCTGCTAGTTATCTGACT 59.660 45.833 3.77 0.00 0.00 3.41
5092 5315 4.098044 TGTGTAGGCTGCTAGTTATCTGAC 59.902 45.833 3.77 0.00 0.00 3.51
5093 5316 4.278310 TGTGTAGGCTGCTAGTTATCTGA 58.722 43.478 3.77 0.00 0.00 3.27
5094 5317 4.655762 TGTGTAGGCTGCTAGTTATCTG 57.344 45.455 3.77 0.00 0.00 2.90
5095 5318 5.677319 TTTGTGTAGGCTGCTAGTTATCT 57.323 39.130 3.77 0.00 0.00 1.98
5096 5319 6.737254 TTTTTGTGTAGGCTGCTAGTTATC 57.263 37.500 3.77 0.00 0.00 1.75
5170 5393 5.956068 AAGGAAAGCAAAACAAGCAAAAA 57.044 30.435 0.00 0.00 0.00 1.94
5171 5394 5.106357 GGAAAGGAAAGCAAAACAAGCAAAA 60.106 36.000 0.00 0.00 0.00 2.44
5172 5395 4.394610 GGAAAGGAAAGCAAAACAAGCAAA 59.605 37.500 0.00 0.00 0.00 3.68
5173 5396 3.938334 GGAAAGGAAAGCAAAACAAGCAA 59.062 39.130 0.00 0.00 0.00 3.91
5174 5397 3.197549 AGGAAAGGAAAGCAAAACAAGCA 59.802 39.130 0.00 0.00 0.00 3.91
5175 5398 3.797039 AGGAAAGGAAAGCAAAACAAGC 58.203 40.909 0.00 0.00 0.00 4.01
5190 5413 6.395629 TCACGTATTTTCTCACCTAGGAAAG 58.604 40.000 17.98 12.13 36.09 2.62
5191 5414 6.349243 TCACGTATTTTCTCACCTAGGAAA 57.651 37.500 17.98 5.33 37.09 3.13
5192 5415 5.988310 TCACGTATTTTCTCACCTAGGAA 57.012 39.130 17.98 1.72 0.00 3.36
5193 5416 5.713389 TCTTCACGTATTTTCTCACCTAGGA 59.287 40.000 17.98 0.00 0.00 2.94
5194 5417 5.805994 GTCTTCACGTATTTTCTCACCTAGG 59.194 44.000 7.41 7.41 0.00 3.02
5195 5418 6.622549 AGTCTTCACGTATTTTCTCACCTAG 58.377 40.000 0.00 0.00 0.00 3.02
5196 5419 6.585695 AGTCTTCACGTATTTTCTCACCTA 57.414 37.500 0.00 0.00 0.00 3.08
5197 5420 5.470047 AGTCTTCACGTATTTTCTCACCT 57.530 39.130 0.00 0.00 0.00 4.00
5198 5421 6.541111 AAAGTCTTCACGTATTTTCTCACC 57.459 37.500 0.00 0.00 0.00 4.02
5199 5422 8.120465 TGAAAAAGTCTTCACGTATTTTCTCAC 58.880 33.333 9.38 0.00 36.48 3.51
5200 5423 8.203937 TGAAAAAGTCTTCACGTATTTTCTCA 57.796 30.769 9.38 0.00 36.48 3.27
5201 5424 9.498307 TTTGAAAAAGTCTTCACGTATTTTCTC 57.502 29.630 9.38 0.00 36.48 2.87
5202 5425 9.849166 TTTTGAAAAAGTCTTCACGTATTTTCT 57.151 25.926 9.38 0.00 36.48 2.52
5205 5428 9.796120 TGATTTTGAAAAAGTCTTCACGTATTT 57.204 25.926 0.00 0.00 35.07 1.40
5206 5429 9.233232 GTGATTTTGAAAAAGTCTTCACGTATT 57.767 29.630 5.82 0.00 35.07 1.89
5207 5430 8.402472 TGTGATTTTGAAAAAGTCTTCACGTAT 58.598 29.630 13.43 0.00 37.16 3.06
5208 5431 7.753659 TGTGATTTTGAAAAAGTCTTCACGTA 58.246 30.769 13.43 0.00 37.16 3.57
5209 5432 6.616947 TGTGATTTTGAAAAAGTCTTCACGT 58.383 32.000 13.43 0.00 37.16 4.49
5210 5433 7.431960 TCATGTGATTTTGAAAAAGTCTTCACG 59.568 33.333 13.43 4.44 37.16 4.35
5211 5434 8.633075 TCATGTGATTTTGAAAAAGTCTTCAC 57.367 30.769 12.11 12.11 35.94 3.18
5212 5435 7.436080 GCTCATGTGATTTTGAAAAAGTCTTCA 59.564 33.333 0.00 0.00 33.48 3.02
5213 5436 7.436080 TGCTCATGTGATTTTGAAAAAGTCTTC 59.564 33.333 0.00 0.00 0.00 2.87
5214 5437 7.267128 TGCTCATGTGATTTTGAAAAAGTCTT 58.733 30.769 0.00 0.00 0.00 3.01
5215 5438 6.808829 TGCTCATGTGATTTTGAAAAAGTCT 58.191 32.000 0.00 0.00 0.00 3.24
5216 5439 7.647907 ATGCTCATGTGATTTTGAAAAAGTC 57.352 32.000 0.00 0.00 0.00 3.01
5217 5440 9.715121 AATATGCTCATGTGATTTTGAAAAAGT 57.285 25.926 0.00 0.00 0.00 2.66
5221 5444 9.932207 AGAAAATATGCTCATGTGATTTTGAAA 57.068 25.926 9.21 0.00 31.59 2.69
5230 5453 9.836076 CCATATGTTAGAAAATATGCTCATGTG 57.164 33.333 1.24 0.00 36.05 3.21
5231 5454 9.017509 CCCATATGTTAGAAAATATGCTCATGT 57.982 33.333 1.24 0.00 36.05 3.21
5232 5455 9.234827 TCCCATATGTTAGAAAATATGCTCATG 57.765 33.333 1.24 0.00 36.05 3.07
5233 5456 9.812347 TTCCCATATGTTAGAAAATATGCTCAT 57.188 29.630 1.24 0.00 36.05 2.90
5234 5457 9.066892 GTTCCCATATGTTAGAAAATATGCTCA 57.933 33.333 1.24 0.00 36.05 4.26
5235 5458 9.066892 TGTTCCCATATGTTAGAAAATATGCTC 57.933 33.333 1.24 0.26 36.05 4.26
5236 5459 8.995027 TGTTCCCATATGTTAGAAAATATGCT 57.005 30.769 1.24 0.00 36.05 3.79
5237 5460 9.463443 GTTGTTCCCATATGTTAGAAAATATGC 57.537 33.333 1.24 0.00 36.05 3.14
5238 5461 9.965824 GGTTGTTCCCATATGTTAGAAAATATG 57.034 33.333 1.24 5.70 36.79 1.78
5239 5462 9.707957 TGGTTGTTCCCATATGTTAGAAAATAT 57.292 29.630 1.24 0.00 34.77 1.28
5240 5463 9.707957 ATGGTTGTTCCCATATGTTAGAAAATA 57.292 29.630 1.24 0.00 43.48 1.40
5241 5464 8.608185 ATGGTTGTTCCCATATGTTAGAAAAT 57.392 30.769 1.24 0.00 43.48 1.82
5242 5465 8.429237 AATGGTTGTTCCCATATGTTAGAAAA 57.571 30.769 1.24 0.00 44.55 2.29
5243 5466 7.893302 AGAATGGTTGTTCCCATATGTTAGAAA 59.107 33.333 1.24 0.00 44.55 2.52
5244 5467 7.410174 AGAATGGTTGTTCCCATATGTTAGAA 58.590 34.615 1.24 0.00 44.55 2.10
5245 5468 6.969043 AGAATGGTTGTTCCCATATGTTAGA 58.031 36.000 1.24 0.00 44.55 2.10
5246 5469 6.828273 TGAGAATGGTTGTTCCCATATGTTAG 59.172 38.462 1.24 0.00 44.55 2.34
5247 5470 6.726379 TGAGAATGGTTGTTCCCATATGTTA 58.274 36.000 1.24 0.00 44.55 2.41
5248 5471 5.579047 TGAGAATGGTTGTTCCCATATGTT 58.421 37.500 1.24 0.00 44.55 2.71
5249 5472 5.191727 TGAGAATGGTTGTTCCCATATGT 57.808 39.130 1.24 0.00 44.55 2.29
5250 5473 6.720112 ATTGAGAATGGTTGTTCCCATATG 57.280 37.500 0.00 0.00 44.55 1.78
5251 5474 7.180766 ACAAATTGAGAATGGTTGTTCCCATAT 59.819 33.333 0.00 0.00 44.55 1.78
5252 5475 6.496565 ACAAATTGAGAATGGTTGTTCCCATA 59.503 34.615 0.00 0.00 44.55 2.74
5254 5477 4.653341 ACAAATTGAGAATGGTTGTTCCCA 59.347 37.500 0.00 0.00 39.27 4.37
5255 5478 5.213891 ACAAATTGAGAATGGTTGTTCCC 57.786 39.130 0.00 0.00 34.77 3.97
5256 5479 7.552458 AAAACAAATTGAGAATGGTTGTTCC 57.448 32.000 0.00 0.00 40.53 3.62
5257 5480 8.663911 TGAAAAACAAATTGAGAATGGTTGTTC 58.336 29.630 0.00 0.00 40.53 3.18
5258 5481 8.558973 TGAAAAACAAATTGAGAATGGTTGTT 57.441 26.923 0.00 0.00 42.58 2.83
5259 5482 8.558973 TTGAAAAACAAATTGAGAATGGTTGT 57.441 26.923 0.00 0.00 35.39 3.32
5294 5517 3.243401 GCGTCCTGAATGGTCTTGTTTTT 60.243 43.478 0.00 0.00 37.07 1.94
5295 5518 2.293399 GCGTCCTGAATGGTCTTGTTTT 59.707 45.455 0.00 0.00 37.07 2.43
5296 5519 1.880027 GCGTCCTGAATGGTCTTGTTT 59.120 47.619 0.00 0.00 37.07 2.83
5297 5520 1.523758 GCGTCCTGAATGGTCTTGTT 58.476 50.000 0.00 0.00 37.07 2.83
5298 5521 0.321653 GGCGTCCTGAATGGTCTTGT 60.322 55.000 0.00 0.00 37.07 3.16
5299 5522 0.036010 AGGCGTCCTGAATGGTCTTG 60.036 55.000 0.00 0.00 37.07 3.02
5300 5523 0.693049 AAGGCGTCCTGAATGGTCTT 59.307 50.000 0.00 0.00 32.13 3.01
5301 5524 0.693049 AAAGGCGTCCTGAATGGTCT 59.307 50.000 0.00 0.00 32.13 3.85
5302 5525 2.093658 TCTAAAGGCGTCCTGAATGGTC 60.094 50.000 0.00 0.00 32.13 4.02
5303 5526 1.906574 TCTAAAGGCGTCCTGAATGGT 59.093 47.619 0.00 0.00 32.13 3.55
5304 5527 2.168521 TCTCTAAAGGCGTCCTGAATGG 59.831 50.000 0.00 0.00 32.13 3.16
5305 5528 3.190874 GTCTCTAAAGGCGTCCTGAATG 58.809 50.000 0.00 0.00 32.13 2.67
5306 5529 2.832129 TGTCTCTAAAGGCGTCCTGAAT 59.168 45.455 0.00 0.00 32.13 2.57
5307 5530 2.244695 TGTCTCTAAAGGCGTCCTGAA 58.755 47.619 0.00 0.00 32.13 3.02
5308 5531 1.919240 TGTCTCTAAAGGCGTCCTGA 58.081 50.000 0.00 0.00 32.13 3.86
5309 5532 2.969628 ATGTCTCTAAAGGCGTCCTG 57.030 50.000 0.00 0.00 32.13 3.86
5310 5533 5.615925 AAATATGTCTCTAAAGGCGTCCT 57.384 39.130 0.00 0.00 33.87 3.85
5311 5534 6.679327 AAAAATATGTCTCTAAAGGCGTCC 57.321 37.500 0.00 0.00 0.00 4.79
5331 5554 9.787435 TGGTGCTTAAAGACTTCTTCTATAAAA 57.213 29.630 0.00 0.00 34.61 1.52
5332 5555 9.959721 ATGGTGCTTAAAGACTTCTTCTATAAA 57.040 29.630 0.00 0.00 34.61 1.40
5333 5556 9.383519 CATGGTGCTTAAAGACTTCTTCTATAA 57.616 33.333 0.00 0.00 34.61 0.98
5334 5557 7.495934 GCATGGTGCTTAAAGACTTCTTCTATA 59.504 37.037 0.00 0.00 40.96 1.31
5335 5558 6.317391 GCATGGTGCTTAAAGACTTCTTCTAT 59.683 38.462 0.00 0.00 40.96 1.98
5336 5559 5.643777 GCATGGTGCTTAAAGACTTCTTCTA 59.356 40.000 0.00 0.00 40.96 2.10
5337 5560 4.457257 GCATGGTGCTTAAAGACTTCTTCT 59.543 41.667 0.00 0.00 40.96 2.85
5338 5561 4.670221 CGCATGGTGCTTAAAGACTTCTTC 60.670 45.833 0.00 0.00 42.25 2.87
5339 5562 3.189287 CGCATGGTGCTTAAAGACTTCTT 59.811 43.478 0.00 0.00 42.25 2.52
5340 5563 2.744202 CGCATGGTGCTTAAAGACTTCT 59.256 45.455 0.00 0.00 42.25 2.85
5341 5564 2.729156 GCGCATGGTGCTTAAAGACTTC 60.729 50.000 0.30 0.00 42.25 3.01
5342 5565 1.200020 GCGCATGGTGCTTAAAGACTT 59.800 47.619 0.30 0.00 42.25 3.01
5343 5566 0.804989 GCGCATGGTGCTTAAAGACT 59.195 50.000 0.30 0.00 42.25 3.24
5344 5567 0.179163 GGCGCATGGTGCTTAAAGAC 60.179 55.000 10.83 0.00 42.25 3.01
5345 5568 0.607762 TGGCGCATGGTGCTTAAAGA 60.608 50.000 10.83 0.00 42.25 2.52
5346 5569 0.456653 GTGGCGCATGGTGCTTAAAG 60.457 55.000 10.83 0.00 42.25 1.85
5347 5570 0.893270 AGTGGCGCATGGTGCTTAAA 60.893 50.000 10.83 0.00 42.25 1.52
5348 5571 0.035915 TAGTGGCGCATGGTGCTTAA 60.036 50.000 10.83 0.00 42.25 1.85
5349 5572 0.461870 CTAGTGGCGCATGGTGCTTA 60.462 55.000 10.83 0.00 42.25 3.09
5350 5573 1.746615 CTAGTGGCGCATGGTGCTT 60.747 57.895 10.83 0.00 42.25 3.91
5351 5574 2.124983 CTAGTGGCGCATGGTGCT 60.125 61.111 10.83 0.00 42.25 4.40
5352 5575 3.204827 CCTAGTGGCGCATGGTGC 61.205 66.667 10.83 0.00 40.69 5.01
5362 5585 3.417275 CTCGCTCACGGCCTAGTGG 62.417 68.421 10.46 3.61 42.10 4.00
5363 5586 2.103143 CTCGCTCACGGCCTAGTG 59.897 66.667 0.00 2.18 43.11 2.74
5364 5587 2.045242 TCTCGCTCACGGCCTAGT 60.045 61.111 0.00 0.00 40.63 2.57
5365 5588 2.115911 ACTCTCGCTCACGGCCTAG 61.116 63.158 0.00 0.00 40.63 3.02
5366 5589 2.045242 ACTCTCGCTCACGGCCTA 60.045 61.111 0.00 0.00 40.63 3.93
5367 5590 3.753434 CACTCTCGCTCACGGCCT 61.753 66.667 0.00 0.00 40.63 5.19
5368 5591 4.803426 CCACTCTCGCTCACGGCC 62.803 72.222 0.00 0.00 40.63 6.13
5369 5592 4.803426 CCCACTCTCGCTCACGGC 62.803 72.222 0.00 0.00 40.63 5.68
5370 5593 4.803426 GCCCACTCTCGCTCACGG 62.803 72.222 0.00 0.00 40.63 4.94
5371 5594 2.329678 CTAGCCCACTCTCGCTCACG 62.330 65.000 0.00 0.00 42.01 4.35
5372 5595 1.435515 CTAGCCCACTCTCGCTCAC 59.564 63.158 0.00 0.00 36.53 3.51
5373 5596 2.418910 GCTAGCCCACTCTCGCTCA 61.419 63.158 2.29 0.00 36.53 4.26
5374 5597 1.671901 AAGCTAGCCCACTCTCGCTC 61.672 60.000 12.13 0.00 36.53 5.03
5375 5598 1.684049 AAGCTAGCCCACTCTCGCT 60.684 57.895 12.13 0.00 39.17 4.93
5376 5599 1.520342 CAAGCTAGCCCACTCTCGC 60.520 63.158 12.13 0.00 0.00 5.03
5377 5600 1.520342 GCAAGCTAGCCCACTCTCG 60.520 63.158 12.13 0.00 0.00 4.04
5378 5601 0.179086 GAGCAAGCTAGCCCACTCTC 60.179 60.000 12.13 7.62 34.23 3.20
5379 5602 1.621672 GGAGCAAGCTAGCCCACTCT 61.622 60.000 21.16 9.47 34.23 3.24
5380 5603 1.153269 GGAGCAAGCTAGCCCACTC 60.153 63.158 12.13 14.76 34.23 3.51
5381 5604 1.204113 AAGGAGCAAGCTAGCCCACT 61.204 55.000 12.13 5.84 34.23 4.00
5382 5605 1.028868 CAAGGAGCAAGCTAGCCCAC 61.029 60.000 12.13 0.09 34.23 4.61
5383 5606 1.300963 CAAGGAGCAAGCTAGCCCA 59.699 57.895 12.13 0.00 34.23 5.36
5384 5607 2.117779 GCAAGGAGCAAGCTAGCCC 61.118 63.158 12.13 4.83 44.79 5.19
5385 5608 2.467826 CGCAAGGAGCAAGCTAGCC 61.468 63.158 12.13 0.00 46.13 3.93
5386 5609 1.427592 CTCGCAAGGAGCAAGCTAGC 61.428 60.000 6.62 6.62 46.13 3.42
5387 5610 2.675519 CTCGCAAGGAGCAAGCTAG 58.324 57.895 0.00 0.00 46.13 3.42
5388 5611 4.919653 CTCGCAAGGAGCAAGCTA 57.080 55.556 0.00 0.00 46.13 3.32
5395 5618 2.107953 GGCTAGGCTCGCAAGGAG 59.892 66.667 13.39 0.00 46.06 3.69
5396 5619 2.290287 TTGGCTAGGCTCGCAAGGA 61.290 57.895 18.18 0.00 38.47 3.36
5397 5620 2.109126 GTTGGCTAGGCTCGCAAGG 61.109 63.158 18.18 0.00 38.47 3.61
5398 5621 1.364626 CTGTTGGCTAGGCTCGCAAG 61.365 60.000 18.18 4.49 0.00 4.01
5399 5622 1.375908 CTGTTGGCTAGGCTCGCAA 60.376 57.895 18.18 0.00 0.00 4.85
5400 5623 2.230994 CTCTGTTGGCTAGGCTCGCA 62.231 60.000 18.18 11.92 0.00 5.10
5401 5624 1.520342 CTCTGTTGGCTAGGCTCGC 60.520 63.158 18.18 1.76 0.00 5.03
5402 5625 0.459237 CACTCTGTTGGCTAGGCTCG 60.459 60.000 18.18 3.38 0.00 5.03
5403 5626 0.610687 ACACTCTGTTGGCTAGGCTC 59.389 55.000 18.18 10.96 0.00 4.70
5404 5627 0.610687 GACACTCTGTTGGCTAGGCT 59.389 55.000 18.18 0.00 0.00 4.58
5405 5628 0.321671 TGACACTCTGTTGGCTAGGC 59.678 55.000 9.85 9.85 0.00 3.93
5406 5629 1.338200 GGTGACACTCTGTTGGCTAGG 60.338 57.143 5.39 0.00 0.00 3.02
5407 5630 1.338200 GGGTGACACTCTGTTGGCTAG 60.338 57.143 5.39 0.00 0.00 3.42
5408 5631 0.685097 GGGTGACACTCTGTTGGCTA 59.315 55.000 5.39 0.00 0.00 3.93
5409 5632 1.056700 AGGGTGACACTCTGTTGGCT 61.057 55.000 7.32 0.00 0.00 4.75
5410 5633 0.886490 CAGGGTGACACTCTGTTGGC 60.886 60.000 24.85 0.00 41.73 4.52
5411 5634 3.312404 CAGGGTGACACTCTGTTGG 57.688 57.895 24.85 1.71 41.73 3.77
5416 5639 2.088104 TGAGAACAGGGTGACACTCT 57.912 50.000 0.80 0.80 0.00 3.24
5417 5640 2.910688 TTGAGAACAGGGTGACACTC 57.089 50.000 5.39 0.17 0.00 3.51
5418 5641 3.644966 TTTTGAGAACAGGGTGACACT 57.355 42.857 5.39 0.00 0.00 3.55
5419 5642 4.338118 TCAATTTTGAGAACAGGGTGACAC 59.662 41.667 0.00 0.00 32.50 3.67
5420 5643 4.531854 TCAATTTTGAGAACAGGGTGACA 58.468 39.130 0.00 0.00 32.50 3.58
5433 5656 8.640651 TCCAGAAATGTTCATTCTCAATTTTGA 58.359 29.630 0.00 0.00 34.99 2.69
5434 5657 8.821147 TCCAGAAATGTTCATTCTCAATTTTG 57.179 30.769 0.00 0.00 34.99 2.44
5435 5658 9.485206 CTTCCAGAAATGTTCATTCTCAATTTT 57.515 29.630 0.00 0.00 34.99 1.82
5436 5659 8.645110 ACTTCCAGAAATGTTCATTCTCAATTT 58.355 29.630 0.00 0.00 34.99 1.82
5437 5660 8.186709 ACTTCCAGAAATGTTCATTCTCAATT 57.813 30.769 0.00 0.00 34.99 2.32
5438 5661 7.771927 ACTTCCAGAAATGTTCATTCTCAAT 57.228 32.000 0.00 0.00 34.99 2.57
5439 5662 7.587037 AACTTCCAGAAATGTTCATTCTCAA 57.413 32.000 0.00 0.00 34.99 3.02
5440 5663 7.587037 AAACTTCCAGAAATGTTCATTCTCA 57.413 32.000 0.00 0.00 34.99 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.