Multiple sequence alignment - TraesCS5D01G501800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G501800 chr5D 100.000 4063 0 0 1 4063 529545223 529541161 0.000000e+00 7504.0
1 TraesCS5D01G501800 chr5D 100.000 44 0 0 3254 3297 265909313 265909356 9.360000e-12 82.4
2 TraesCS5D01G501800 chr5D 91.525 59 0 4 3254 3312 184072218 184072165 4.350000e-10 76.8
3 TraesCS5D01G501800 chr5B 92.049 981 55 14 995 1974 668519091 668518133 0.000000e+00 1358.0
4 TraesCS5D01G501800 chr5B 91.677 805 38 21 255 1038 668824964 668824168 0.000000e+00 1088.0
5 TraesCS5D01G501800 chr5B 86.784 855 61 36 2447 3267 668517642 668516806 0.000000e+00 905.0
6 TraesCS5D01G501800 chr5B 90.227 706 37 10 3377 4063 668474815 668474123 0.000000e+00 893.0
7 TraesCS5D01G501800 chr5B 86.822 387 22 9 594 972 668519533 668519168 4.890000e-109 405.0
8 TraesCS5D01G501800 chr5B 89.344 244 22 3 267 507 668519814 668519572 1.840000e-78 303.0
9 TraesCS5D01G501800 chr5B 88.538 253 16 7 1 248 611324595 611324351 1.100000e-75 294.0
10 TraesCS5D01G501800 chr5B 88.265 196 18 4 2119 2313 668517922 668517731 3.160000e-56 230.0
11 TraesCS5D01G501800 chr5B 89.130 92 8 2 2028 2117 464356387 464356478 3.320000e-21 113.0
12 TraesCS5D01G501800 chr5A 93.944 644 26 6 2434 3074 657555288 657554655 0.000000e+00 961.0
13 TraesCS5D01G501800 chr5A 87.206 680 55 19 1059 1737 657556729 657556081 0.000000e+00 745.0
14 TraesCS5D01G501800 chr5A 83.514 831 82 26 1167 1974 657571005 657570207 0.000000e+00 725.0
15 TraesCS5D01G501800 chr5A 88.706 425 22 9 3655 4063 657548315 657547901 2.820000e-136 496.0
16 TraesCS5D01G501800 chr5A 88.372 387 31 9 593 972 657581553 657581174 1.720000e-123 453.0
17 TraesCS5D01G501800 chr5A 88.325 394 23 11 595 972 657564581 657564195 6.190000e-123 451.0
18 TraesCS5D01G501800 chr5A 88.839 224 17 4 3426 3647 657548577 657548360 6.690000e-68 268.0
19 TraesCS5D01G501800 chr5A 84.672 274 25 11 239 507 657564882 657564621 1.450000e-64 257.0
20 TraesCS5D01G501800 chr5A 91.111 180 14 2 2166 2344 657555569 657555391 4.060000e-60 243.0
21 TraesCS5D01G501800 chr5A 97.872 47 1 0 3254 3300 24199740 24199786 9.360000e-12 82.4
22 TraesCS5D01G501800 chr4A 84.254 489 60 14 1493 1973 524170022 524169543 1.030000e-125 460.0
23 TraesCS5D01G501800 chr4A 87.879 99 9 2 2025 2121 663651318 663651221 3.320000e-21 113.0
24 TraesCS5D01G501800 chr4A 90.588 85 6 1 2026 2108 107430147 107430231 1.190000e-20 111.0
25 TraesCS5D01G501800 chr4A 97.917 48 0 1 3254 3301 416636781 416636827 9.360000e-12 82.4
26 TraesCS5D01G501800 chr4A 100.000 28 0 0 504 531 709902945 709902972 7.000000e-03 52.8
27 TraesCS5D01G501800 chr2D 84.387 269 19 7 1 254 396182259 396181999 4.060000e-60 243.0
28 TraesCS5D01G501800 chr2D 84.674 261 17 12 3 246 43688151 43688405 5.250000e-59 239.0
29 TraesCS5D01G501800 chr2D 86.538 104 11 2 2020 2120 426864626 426864523 1.190000e-20 111.0
30 TraesCS5D01G501800 chr1D 82.375 261 22 8 1 245 54200559 54200811 5.320000e-49 206.0
31 TraesCS5D01G501800 chr1D 82.845 239 18 7 21 245 54201139 54201368 4.140000e-45 193.0
32 TraesCS5D01G501800 chr1D 80.460 261 22 8 1 246 474126229 474125983 5.400000e-39 172.0
33 TraesCS5D01G501800 chr1D 96.491 57 2 0 2337 2393 477211048 477211104 1.200000e-15 95.3
34 TraesCS5D01G501800 chr4D 79.693 261 17 9 1 246 92205146 92205385 5.440000e-34 156.0
35 TraesCS5D01G501800 chr6B 81.595 163 30 0 2593 2755 705155774 705155612 7.080000e-28 135.0
36 TraesCS5D01G501800 chr6B 87.000 100 10 2 2022 2118 13827617 13827518 4.290000e-20 110.0
37 TraesCS5D01G501800 chr6B 91.379 58 4 1 3254 3311 437469936 437469880 1.210000e-10 78.7
38 TraesCS5D01G501800 chr6D 81.595 163 27 3 2593 2755 462530063 462529904 9.160000e-27 132.0
39 TraesCS5D01G501800 chr3A 81.481 162 28 2 2634 2794 615715296 615715136 9.160000e-27 132.0
40 TraesCS5D01G501800 chr6A 81.879 149 27 0 2607 2755 609376902 609376754 4.260000e-25 126.0
41 TraesCS5D01G501800 chr3B 94.048 84 3 1 2027 2108 4263366 4263283 4.260000e-25 126.0
42 TraesCS5D01G501800 chr3B 94.048 84 3 1 2027 2108 5137650 5137567 4.260000e-25 126.0
43 TraesCS5D01G501800 chr3B 82.963 135 21 2 2634 2767 628470765 628470632 1.980000e-23 121.0
44 TraesCS5D01G501800 chr3B 89.583 96 7 2 2027 2120 408415203 408415109 7.130000e-23 119.0
45 TraesCS5D01G501800 chr3B 92.188 64 3 2 2334 2396 29377109 29377047 5.590000e-14 89.8
46 TraesCS5D01G501800 chr3D 80.247 162 30 2 2634 2794 473455869 473455709 1.980000e-23 121.0
47 TraesCS5D01G501800 chr3D 97.959 49 0 1 3254 3301 551215762 551215714 2.600000e-12 84.2
48 TraesCS5D01G501800 chr4B 87.879 99 9 2 2025 2121 4233514 4233611 3.320000e-21 113.0
49 TraesCS5D01G501800 chr4B 94.915 59 2 1 2338 2396 141430709 141430652 1.560000e-14 91.6
50 TraesCS5D01G501800 chr4B 91.525 59 1 2 3254 3312 326084421 326084367 1.210000e-10 78.7
51 TraesCS5D01G501800 chr7A 96.667 60 1 1 2337 2396 686240201 686240259 9.290000e-17 99.0
52 TraesCS5D01G501800 chr7A 96.552 58 1 1 2339 2396 208523673 208523729 1.200000e-15 95.3
53 TraesCS5D01G501800 chr7A 86.842 76 6 3 2318 2393 549354500 549354571 9.360000e-12 82.4
54 TraesCS5D01G501800 chr7A 84.000 75 11 1 3254 3328 128926325 128926398 2.030000e-08 71.3
55 TraesCS5D01G501800 chr2B 96.491 57 1 1 2340 2396 380495659 380495604 4.320000e-15 93.5
56 TraesCS5D01G501800 chr1B 93.548 62 2 2 2335 2396 250569458 250569399 1.560000e-14 91.6
57 TraesCS5D01G501800 chr1A 92.188 64 3 2 2334 2396 56623716 56623778 5.590000e-14 89.8
58 TraesCS5D01G501800 chr2A 92.727 55 1 3 3254 3308 760127135 760127084 4.350000e-10 76.8
59 TraesCS5D01G501800 chrUn 90.909 44 4 0 3308 3351 137771860 137771817 4.390000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G501800 chr5D 529541161 529545223 4062 True 7504.000000 7504 100.000000 1 4063 1 chr5D.!!$R2 4062
1 TraesCS5D01G501800 chr5B 668824168 668824964 796 True 1088.000000 1088 91.677000 255 1038 1 chr5B.!!$R3 783
2 TraesCS5D01G501800 chr5B 668474123 668474815 692 True 893.000000 893 90.227000 3377 4063 1 chr5B.!!$R2 686
3 TraesCS5D01G501800 chr5B 668516806 668519814 3008 True 640.200000 1358 88.652800 267 3267 5 chr5B.!!$R4 3000
4 TraesCS5D01G501800 chr5A 657570207 657571005 798 True 725.000000 725 83.514000 1167 1974 1 chr5A.!!$R1 807
5 TraesCS5D01G501800 chr5A 657554655 657556729 2074 True 649.666667 961 90.753667 1059 3074 3 chr5A.!!$R4 2015
6 TraesCS5D01G501800 chr5A 657547901 657548577 676 True 382.000000 496 88.772500 3426 4063 2 chr5A.!!$R3 637
7 TraesCS5D01G501800 chr5A 657564195 657564882 687 True 354.000000 451 86.498500 239 972 2 chr5A.!!$R5 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.108520 TTATGAGTTCGACCCGGTGC 60.109 55.000 0.00 0.0 0.0 5.01 F
32 33 0.320697 GACCCGGTGCTAGTGTTCTT 59.679 55.000 0.00 0.0 0.0 2.52 F
205 206 0.328450 AGGGGCATGGGGTAATCTCA 60.328 55.000 0.00 0.0 0.0 3.27 F
206 207 0.555769 GGGGCATGGGGTAATCTCAA 59.444 55.000 0.00 0.0 0.0 3.02 F
660 680 0.824182 AATTTTCCCCAACCGCACGA 60.824 50.000 0.00 0.0 0.0 4.35 F
2271 2594 1.082692 CGCGATCGACGTAGCTCAT 60.083 57.895 21.57 0.0 44.6 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1448 0.710588 TCCTGCTCCCCTGAGAGTAA 59.289 55.000 0.00 0.0 41.42 2.24 R
1875 2030 1.481056 AACCCGAGGAACCTCACCAG 61.481 60.000 19.03 7.9 42.86 4.00 R
2004 2255 2.547299 TTTTTCTGGCAAATGCAGGG 57.453 45.000 7.80 0.0 44.36 4.45 R
2088 2344 4.623932 TGCTCCTTCTGTAGACAAATGT 57.376 40.909 0.00 0.0 0.00 2.71 R
2488 2891 0.460284 GATCACCGACCGTTCTGCAT 60.460 55.000 0.00 0.0 0.00 3.96 R
3998 4503 0.107017 AAATCCTGTATGCCGCTGCT 60.107 50.000 0.70 0.0 38.71 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.822164 AGGTTATGAGTTCGACCCGG 59.178 55.000 0.00 0.00 32.53 5.73
20 21 0.533951 GGTTATGAGTTCGACCCGGT 59.466 55.000 0.00 0.00 0.00 5.28
21 22 1.636988 GTTATGAGTTCGACCCGGTG 58.363 55.000 0.00 0.00 0.00 4.94
22 23 0.108520 TTATGAGTTCGACCCGGTGC 60.109 55.000 0.00 0.00 0.00 5.01
23 24 0.968901 TATGAGTTCGACCCGGTGCT 60.969 55.000 0.00 0.00 0.00 4.40
24 25 0.968901 ATGAGTTCGACCCGGTGCTA 60.969 55.000 0.00 0.00 0.00 3.49
25 26 1.139095 GAGTTCGACCCGGTGCTAG 59.861 63.158 0.00 0.00 0.00 3.42
26 27 1.593296 GAGTTCGACCCGGTGCTAGT 61.593 60.000 0.00 0.00 0.00 2.57
27 28 1.445582 GTTCGACCCGGTGCTAGTG 60.446 63.158 0.00 0.00 0.00 2.74
28 29 1.904865 TTCGACCCGGTGCTAGTGT 60.905 57.895 0.00 0.00 0.00 3.55
29 30 1.466025 TTCGACCCGGTGCTAGTGTT 61.466 55.000 0.00 0.00 0.00 3.32
30 31 1.445582 CGACCCGGTGCTAGTGTTC 60.446 63.158 0.00 0.00 0.00 3.18
31 32 1.874345 CGACCCGGTGCTAGTGTTCT 61.874 60.000 0.00 0.00 0.00 3.01
32 33 0.320697 GACCCGGTGCTAGTGTTCTT 59.679 55.000 0.00 0.00 0.00 2.52
33 34 1.547372 GACCCGGTGCTAGTGTTCTTA 59.453 52.381 0.00 0.00 0.00 2.10
34 35 1.972795 ACCCGGTGCTAGTGTTCTTAA 59.027 47.619 0.00 0.00 0.00 1.85
35 36 2.570302 ACCCGGTGCTAGTGTTCTTAAT 59.430 45.455 0.00 0.00 0.00 1.40
36 37 3.008704 ACCCGGTGCTAGTGTTCTTAATT 59.991 43.478 0.00 0.00 0.00 1.40
37 38 4.007659 CCCGGTGCTAGTGTTCTTAATTT 58.992 43.478 0.00 0.00 0.00 1.82
38 39 4.457949 CCCGGTGCTAGTGTTCTTAATTTT 59.542 41.667 0.00 0.00 0.00 1.82
39 40 5.048294 CCCGGTGCTAGTGTTCTTAATTTTT 60.048 40.000 0.00 0.00 0.00 1.94
40 41 6.084277 CCGGTGCTAGTGTTCTTAATTTTTC 58.916 40.000 0.00 0.00 0.00 2.29
41 42 6.084277 CGGTGCTAGTGTTCTTAATTTTTCC 58.916 40.000 0.00 0.00 0.00 3.13
42 43 6.293735 CGGTGCTAGTGTTCTTAATTTTTCCA 60.294 38.462 0.00 0.00 0.00 3.53
43 44 7.084486 GGTGCTAGTGTTCTTAATTTTTCCAG 58.916 38.462 0.00 0.00 0.00 3.86
44 45 6.582672 GTGCTAGTGTTCTTAATTTTTCCAGC 59.417 38.462 0.00 0.00 0.00 4.85
45 46 6.264292 TGCTAGTGTTCTTAATTTTTCCAGCA 59.736 34.615 0.00 0.00 0.00 4.41
46 47 7.039784 TGCTAGTGTTCTTAATTTTTCCAGCAT 60.040 33.333 0.00 0.00 0.00 3.79
47 48 7.814587 GCTAGTGTTCTTAATTTTTCCAGCATT 59.185 33.333 0.00 0.00 0.00 3.56
48 49 9.696917 CTAGTGTTCTTAATTTTTCCAGCATTT 57.303 29.630 0.00 0.00 0.00 2.32
49 50 8.962884 AGTGTTCTTAATTTTTCCAGCATTTT 57.037 26.923 0.00 0.00 0.00 1.82
50 51 9.394767 AGTGTTCTTAATTTTTCCAGCATTTTT 57.605 25.926 0.00 0.00 0.00 1.94
55 56 9.705290 TCTTAATTTTTCCAGCATTTTTACCTC 57.295 29.630 0.00 0.00 0.00 3.85
56 57 8.527567 TTAATTTTTCCAGCATTTTTACCTCG 57.472 30.769 0.00 0.00 0.00 4.63
57 58 3.569250 TTTCCAGCATTTTTACCTCGC 57.431 42.857 0.00 0.00 0.00 5.03
58 59 1.083489 TCCAGCATTTTTACCTCGCG 58.917 50.000 0.00 0.00 0.00 5.87
59 60 0.523335 CCAGCATTTTTACCTCGCGC 60.523 55.000 0.00 0.00 0.00 6.86
60 61 0.857311 CAGCATTTTTACCTCGCGCG 60.857 55.000 26.76 26.76 0.00 6.86
61 62 2.214948 GCATTTTTACCTCGCGCGC 61.215 57.895 27.95 23.91 0.00 6.86
62 63 1.927827 CATTTTTACCTCGCGCGCG 60.928 57.895 44.84 44.84 41.35 6.86
63 64 3.711997 ATTTTTACCTCGCGCGCGC 62.712 57.895 45.41 42.65 39.59 6.86
74 75 4.757354 CGCGCGCTCAAATGGCAA 62.757 61.111 30.48 0.00 0.00 4.52
75 76 2.877582 GCGCGCTCAAATGGCAAG 60.878 61.111 26.67 0.00 0.00 4.01
76 77 2.562912 CGCGCTCAAATGGCAAGT 59.437 55.556 5.56 0.00 0.00 3.16
77 78 1.798725 CGCGCTCAAATGGCAAGTG 60.799 57.895 5.56 0.00 0.00 3.16
78 79 1.444895 GCGCTCAAATGGCAAGTGG 60.445 57.895 0.00 0.00 0.00 4.00
79 80 1.444895 CGCTCAAATGGCAAGTGGC 60.445 57.895 0.00 0.00 43.74 5.01
103 104 2.281208 GCCCAGTTGTGCACCGTA 60.281 61.111 15.69 0.00 0.00 4.02
104 105 1.674322 GCCCAGTTGTGCACCGTAT 60.674 57.895 15.69 0.00 0.00 3.06
105 106 1.644786 GCCCAGTTGTGCACCGTATC 61.645 60.000 15.69 0.12 0.00 2.24
106 107 1.024579 CCCAGTTGTGCACCGTATCC 61.025 60.000 15.69 0.00 0.00 2.59
107 108 1.358725 CCAGTTGTGCACCGTATCCG 61.359 60.000 15.69 0.00 0.00 4.18
108 109 0.669318 CAGTTGTGCACCGTATCCGT 60.669 55.000 15.69 0.00 0.00 4.69
109 110 0.669318 AGTTGTGCACCGTATCCGTG 60.669 55.000 15.69 0.00 0.00 4.94
110 111 2.030401 TTGTGCACCGTATCCGTGC 61.030 57.895 15.69 6.00 39.72 5.34
111 112 2.125673 GTGCACCGTATCCGTGCT 60.126 61.111 5.22 0.00 39.87 4.40
112 113 2.165301 GTGCACCGTATCCGTGCTC 61.165 63.158 5.22 6.84 39.87 4.26
113 114 2.954868 GCACCGTATCCGTGCTCG 60.955 66.667 5.71 0.14 37.79 5.03
124 125 3.744941 CGTGCTCGGTAATTACCCA 57.255 52.632 25.64 16.43 43.51 4.51
125 126 2.012937 CGTGCTCGGTAATTACCCAA 57.987 50.000 25.64 14.79 43.51 4.12
126 127 2.348660 CGTGCTCGGTAATTACCCAAA 58.651 47.619 25.64 12.56 43.51 3.28
127 128 2.743126 CGTGCTCGGTAATTACCCAAAA 59.257 45.455 25.64 9.35 43.51 2.44
128 129 3.188873 CGTGCTCGGTAATTACCCAAAAA 59.811 43.478 25.64 8.06 43.51 1.94
129 130 4.478699 GTGCTCGGTAATTACCCAAAAAC 58.521 43.478 25.64 15.06 43.51 2.43
130 131 4.023021 GTGCTCGGTAATTACCCAAAAACA 60.023 41.667 25.64 13.98 43.51 2.83
131 132 4.583489 TGCTCGGTAATTACCCAAAAACAA 59.417 37.500 25.64 4.23 43.51 2.83
132 133 5.068723 TGCTCGGTAATTACCCAAAAACAAA 59.931 36.000 25.64 2.91 43.51 2.83
133 134 5.984323 GCTCGGTAATTACCCAAAAACAAAA 59.016 36.000 25.64 1.78 43.51 2.44
134 135 6.479331 GCTCGGTAATTACCCAAAAACAAAAA 59.521 34.615 25.64 0.46 43.51 1.94
135 136 7.171848 GCTCGGTAATTACCCAAAAACAAAAAT 59.828 33.333 25.64 0.00 43.51 1.82
136 137 9.694137 CTCGGTAATTACCCAAAAACAAAAATA 57.306 29.630 25.64 0.00 43.51 1.40
145 146 8.275015 ACCCAAAAACAAAAATAACTCAAAGG 57.725 30.769 0.00 0.00 0.00 3.11
146 147 7.885922 ACCCAAAAACAAAAATAACTCAAAGGT 59.114 29.630 0.00 0.00 0.00 3.50
147 148 8.180920 CCCAAAAACAAAAATAACTCAAAGGTG 58.819 33.333 0.00 0.00 0.00 4.00
148 149 8.940952 CCAAAAACAAAAATAACTCAAAGGTGA 58.059 29.630 0.00 0.00 0.00 4.02
151 152 9.665719 AAAACAAAAATAACTCAAAGGTGATGT 57.334 25.926 0.00 0.00 31.85 3.06
153 154 9.744468 AACAAAAATAACTCAAAGGTGATGTAC 57.256 29.630 0.00 0.00 31.85 2.90
154 155 9.131791 ACAAAAATAACTCAAAGGTGATGTACT 57.868 29.630 0.00 0.00 31.85 2.73
155 156 9.965824 CAAAAATAACTCAAAGGTGATGTACTT 57.034 29.630 0.00 0.00 31.85 2.24
158 159 9.574516 AAATAACTCAAAGGTGATGTACTTTCT 57.425 29.630 0.00 0.00 34.89 2.52
161 162 8.974060 AACTCAAAGGTGATGTACTTTCTAAA 57.026 30.769 0.00 0.00 34.89 1.85
162 163 9.574516 AACTCAAAGGTGATGTACTTTCTAAAT 57.425 29.630 0.00 0.00 34.89 1.40
163 164 9.003658 ACTCAAAGGTGATGTACTTTCTAAATG 57.996 33.333 0.00 0.00 34.89 2.32
164 165 9.219603 CTCAAAGGTGATGTACTTTCTAAATGA 57.780 33.333 0.00 0.00 34.89 2.57
165 166 8.999431 TCAAAGGTGATGTACTTTCTAAATGAC 58.001 33.333 0.00 0.00 34.89 3.06
166 167 7.923414 AAGGTGATGTACTTTCTAAATGACC 57.077 36.000 0.00 0.00 0.00 4.02
167 168 7.016153 AGGTGATGTACTTTCTAAATGACCA 57.984 36.000 0.00 0.00 0.00 4.02
168 169 7.633789 AGGTGATGTACTTTCTAAATGACCAT 58.366 34.615 0.00 0.00 0.00 3.55
169 170 7.770897 AGGTGATGTACTTTCTAAATGACCATC 59.229 37.037 0.00 0.00 0.00 3.51
170 171 7.254455 GGTGATGTACTTTCTAAATGACCATCG 60.254 40.741 0.00 0.00 0.00 3.84
171 172 7.277981 GTGATGTACTTTCTAAATGACCATCGT 59.722 37.037 0.00 0.00 0.00 3.73
172 173 6.961359 TGTACTTTCTAAATGACCATCGTG 57.039 37.500 0.00 0.00 0.00 4.35
173 174 4.946784 ACTTTCTAAATGACCATCGTGC 57.053 40.909 0.00 0.00 0.00 5.34
174 175 4.579869 ACTTTCTAAATGACCATCGTGCT 58.420 39.130 0.00 0.00 0.00 4.40
175 176 4.631813 ACTTTCTAAATGACCATCGTGCTC 59.368 41.667 0.00 0.00 0.00 4.26
176 177 4.471904 TTCTAAATGACCATCGTGCTCT 57.528 40.909 0.00 0.00 0.00 4.09
177 178 4.471904 TCTAAATGACCATCGTGCTCTT 57.528 40.909 0.00 0.00 0.00 2.85
178 179 4.832248 TCTAAATGACCATCGTGCTCTTT 58.168 39.130 0.00 0.00 0.00 2.52
179 180 5.972935 TCTAAATGACCATCGTGCTCTTTA 58.027 37.500 0.00 0.00 0.00 1.85
180 181 6.582636 TCTAAATGACCATCGTGCTCTTTAT 58.417 36.000 0.00 0.00 0.00 1.40
181 182 7.047891 TCTAAATGACCATCGTGCTCTTTATT 58.952 34.615 0.00 0.00 0.00 1.40
182 183 8.201464 TCTAAATGACCATCGTGCTCTTTATTA 58.799 33.333 0.00 0.00 0.00 0.98
183 184 7.807977 AAATGACCATCGTGCTCTTTATTAT 57.192 32.000 0.00 0.00 0.00 1.28
184 185 6.791887 ATGACCATCGTGCTCTTTATTATG 57.208 37.500 0.00 0.00 0.00 1.90
185 186 5.912892 TGACCATCGTGCTCTTTATTATGA 58.087 37.500 0.00 0.00 0.00 2.15
186 187 6.345298 TGACCATCGTGCTCTTTATTATGAA 58.655 36.000 0.00 0.00 0.00 2.57
187 188 6.479990 TGACCATCGTGCTCTTTATTATGAAG 59.520 38.462 0.00 0.00 0.00 3.02
188 189 5.760253 ACCATCGTGCTCTTTATTATGAAGG 59.240 40.000 0.00 0.00 0.00 3.46
189 190 5.180117 CCATCGTGCTCTTTATTATGAAGGG 59.820 44.000 0.00 0.00 0.00 3.95
190 191 4.703897 TCGTGCTCTTTATTATGAAGGGG 58.296 43.478 0.00 0.00 0.00 4.79
191 192 3.251004 CGTGCTCTTTATTATGAAGGGGC 59.749 47.826 0.00 4.33 0.00 5.80
192 193 4.207165 GTGCTCTTTATTATGAAGGGGCA 58.793 43.478 11.48 11.48 34.04 5.36
193 194 4.829492 GTGCTCTTTATTATGAAGGGGCAT 59.171 41.667 15.74 0.00 36.50 4.40
194 195 4.828939 TGCTCTTTATTATGAAGGGGCATG 59.171 41.667 11.48 0.00 32.73 4.06
195 196 4.219288 GCTCTTTATTATGAAGGGGCATGG 59.781 45.833 0.00 0.00 0.00 3.66
196 197 4.739793 TCTTTATTATGAAGGGGCATGGG 58.260 43.478 0.00 0.00 0.00 4.00
197 198 3.541242 TTATTATGAAGGGGCATGGGG 57.459 47.619 0.00 0.00 0.00 4.96
198 199 1.244366 ATTATGAAGGGGCATGGGGT 58.756 50.000 0.00 0.00 0.00 4.95
199 200 1.914272 TTATGAAGGGGCATGGGGTA 58.086 50.000 0.00 0.00 0.00 3.69
200 201 1.914272 TATGAAGGGGCATGGGGTAA 58.086 50.000 0.00 0.00 0.00 2.85
201 202 1.244366 ATGAAGGGGCATGGGGTAAT 58.756 50.000 0.00 0.00 0.00 1.89
202 203 0.555769 TGAAGGGGCATGGGGTAATC 59.444 55.000 0.00 0.00 0.00 1.75
203 204 0.853530 GAAGGGGCATGGGGTAATCT 59.146 55.000 0.00 0.00 0.00 2.40
204 205 0.853530 AAGGGGCATGGGGTAATCTC 59.146 55.000 0.00 0.00 0.00 2.75
205 206 0.328450 AGGGGCATGGGGTAATCTCA 60.328 55.000 0.00 0.00 0.00 3.27
206 207 0.555769 GGGGCATGGGGTAATCTCAA 59.444 55.000 0.00 0.00 0.00 3.02
207 208 1.692411 GGGCATGGGGTAATCTCAAC 58.308 55.000 0.00 0.00 0.00 3.18
208 209 1.215423 GGGCATGGGGTAATCTCAACT 59.785 52.381 0.00 0.00 0.00 3.16
209 210 2.301346 GGCATGGGGTAATCTCAACTG 58.699 52.381 0.00 0.00 0.00 3.16
210 211 2.357154 GGCATGGGGTAATCTCAACTGT 60.357 50.000 0.00 0.00 0.00 3.55
211 212 3.356290 GCATGGGGTAATCTCAACTGTT 58.644 45.455 0.00 0.00 0.00 3.16
212 213 4.523083 GCATGGGGTAATCTCAACTGTTA 58.477 43.478 0.00 0.00 0.00 2.41
213 214 4.947388 GCATGGGGTAATCTCAACTGTTAA 59.053 41.667 0.00 0.00 0.00 2.01
214 215 5.594317 GCATGGGGTAATCTCAACTGTTAAT 59.406 40.000 0.00 0.00 0.00 1.40
215 216 6.460123 GCATGGGGTAATCTCAACTGTTAATG 60.460 42.308 0.00 0.00 0.00 1.90
216 217 6.134535 TGGGGTAATCTCAACTGTTAATGT 57.865 37.500 0.00 0.00 0.00 2.71
217 218 5.943416 TGGGGTAATCTCAACTGTTAATGTG 59.057 40.000 0.00 0.00 0.00 3.21
218 219 5.944007 GGGGTAATCTCAACTGTTAATGTGT 59.056 40.000 0.00 0.00 0.00 3.72
219 220 6.433093 GGGGTAATCTCAACTGTTAATGTGTT 59.567 38.462 0.00 0.00 0.00 3.32
220 221 7.039993 GGGGTAATCTCAACTGTTAATGTGTTT 60.040 37.037 0.00 0.00 0.00 2.83
221 222 9.005777 GGGTAATCTCAACTGTTAATGTGTTTA 57.994 33.333 0.00 0.00 0.00 2.01
224 225 7.687941 ATCTCAACTGTTAATGTGTTTAGGG 57.312 36.000 0.00 0.00 0.00 3.53
225 226 6.001460 TCTCAACTGTTAATGTGTTTAGGGG 58.999 40.000 0.00 0.00 0.00 4.79
226 227 5.074115 TCAACTGTTAATGTGTTTAGGGGG 58.926 41.667 0.00 0.00 0.00 5.40
253 254 1.535462 CGAAGCGGAAGTGATGGTTTT 59.465 47.619 0.00 0.00 0.00 2.43
351 362 4.488126 TTGCATTGCCGAAATAGATAGC 57.512 40.909 6.12 0.00 0.00 2.97
590 605 4.445718 CAGAGTTCACCGTCATATATGTGC 59.554 45.833 12.42 6.34 0.00 4.57
594 609 5.246203 AGTTCACCGTCATATATGTGCCTAT 59.754 40.000 12.42 0.00 0.00 2.57
660 680 0.824182 AATTTTCCCCAACCGCACGA 60.824 50.000 0.00 0.00 0.00 4.35
772 803 3.196469 TCCATGAACAACAACCAGCAAAA 59.804 39.130 0.00 0.00 0.00 2.44
859 897 3.304928 GCTCAGGTCAAACAAATCACCAG 60.305 47.826 0.00 0.00 0.00 4.00
860 898 3.885297 CTCAGGTCAAACAAATCACCAGT 59.115 43.478 0.00 0.00 0.00 4.00
861 899 5.042463 TCAGGTCAAACAAATCACCAGTA 57.958 39.130 0.00 0.00 0.00 2.74
939 977 1.293179 CGCAGTCTGACCACCATCA 59.707 57.895 3.32 0.00 0.00 3.07
953 994 3.441163 CACCATCAAAATCATTGCTCCG 58.559 45.455 0.00 0.00 0.00 4.63
1069 1166 4.074526 GCAGCCAGCAGGTCTCGA 62.075 66.667 0.00 0.00 44.79 4.04
1082 1179 1.606737 GGTCTCGAGCTTCAGCAACTT 60.607 52.381 7.81 0.00 45.16 2.66
1088 1185 1.605710 GAGCTTCAGCAACTTCAGCAA 59.394 47.619 0.75 0.00 45.16 3.91
1121 1218 4.266962 GTACCCGTACCCCTCCTC 57.733 66.667 0.00 0.00 0.00 3.71
1135 1232 4.400251 CCTCCTCCCCGGACACCT 62.400 72.222 0.73 0.00 36.69 4.00
1136 1233 2.760385 CTCCTCCCCGGACACCTC 60.760 72.222 0.73 0.00 36.69 3.85
1137 1234 4.753662 TCCTCCCCGGACACCTCG 62.754 72.222 0.73 0.00 36.69 4.63
1299 1397 4.821589 GTCAGGAAGGCCGAGGCG 62.822 72.222 8.14 0.00 43.06 5.52
1350 1448 2.284995 GGGAGCAGGAGTGGAGGT 60.285 66.667 0.00 0.00 0.00 3.85
1406 1504 1.553248 CTCCACGGATTCAGGTACCAA 59.447 52.381 15.94 0.02 0.00 3.67
1437 1537 2.023673 TCCTCTGTTTTGTTGCCAGTG 58.976 47.619 0.00 0.00 0.00 3.66
1734 1847 3.295973 CAGAAAGGTCAGGGGAAACAAA 58.704 45.455 0.00 0.00 0.00 2.83
1746 1859 6.015519 TCAGGGGAAACAAACAAACATCATAG 60.016 38.462 0.00 0.00 0.00 2.23
1781 1919 5.483685 ACTGTCAGGAGCAACTAATGTAA 57.516 39.130 4.53 0.00 0.00 2.41
1808 1963 8.830201 TGAATATTTTGTTGCTGCAGTTAAAT 57.170 26.923 16.64 14.76 0.00 1.40
1827 1982 8.364142 AGTTAAATGGTCAGTATCTATCTGCTC 58.636 37.037 0.00 0.00 33.48 4.26
1862 2017 2.733858 GCTCGAGACGCTTCAGAAGATT 60.734 50.000 18.75 0.00 0.00 2.40
1875 2030 4.511527 TCAGAAGATTGAGCACCAGAATC 58.488 43.478 0.00 0.00 0.00 2.52
1974 2129 2.919602 AGGGAACACTTGGATGGTATGT 59.080 45.455 0.00 0.00 0.00 2.29
1976 2131 4.080526 AGGGAACACTTGGATGGTATGTAC 60.081 45.833 0.00 0.00 0.00 2.90
1978 2133 5.116882 GGAACACTTGGATGGTATGTACTC 58.883 45.833 0.00 0.00 0.00 2.59
1998 2249 9.013229 TGTACTCTGCATTCACATTTCTAATTT 57.987 29.630 0.00 0.00 0.00 1.82
2004 2255 8.746922 TGCATTCACATTTCTAATTTCAGTTC 57.253 30.769 0.00 0.00 0.00 3.01
2005 2256 7.814107 TGCATTCACATTTCTAATTTCAGTTCC 59.186 33.333 0.00 0.00 0.00 3.62
2008 2259 7.452880 TCACATTTCTAATTTCAGTTCCCTG 57.547 36.000 0.00 0.00 40.25 4.45
2023 2279 2.045524 TCCCTGCATTTGCCAGAAAAA 58.954 42.857 0.00 0.00 41.18 1.94
2045 2301 8.866970 AAAAATATACTCCCTCCGTAAACAAA 57.133 30.769 0.00 0.00 0.00 2.83
2046 2302 9.470399 AAAAATATACTCCCTCCGTAAACAAAT 57.530 29.630 0.00 0.00 0.00 2.32
2049 2305 9.720769 AATATACTCCCTCCGTAAACAAATATG 57.279 33.333 0.00 0.00 0.00 1.78
2050 2306 5.687166 ACTCCCTCCGTAAACAAATATGA 57.313 39.130 0.00 0.00 0.00 2.15
2051 2307 5.671493 ACTCCCTCCGTAAACAAATATGAG 58.329 41.667 0.00 0.00 0.00 2.90
2052 2308 5.189145 ACTCCCTCCGTAAACAAATATGAGT 59.811 40.000 0.00 0.00 0.00 3.41
2053 2309 5.424757 TCCCTCCGTAAACAAATATGAGTG 58.575 41.667 0.00 0.00 0.00 3.51
2054 2310 5.046159 TCCCTCCGTAAACAAATATGAGTGT 60.046 40.000 0.00 0.00 0.00 3.55
2055 2311 5.646360 CCCTCCGTAAACAAATATGAGTGTT 59.354 40.000 0.00 0.00 39.63 3.32
2056 2312 6.150474 CCCTCCGTAAACAAATATGAGTGTTT 59.850 38.462 13.75 13.75 46.73 2.83
2057 2313 7.334921 CCCTCCGTAAACAAATATGAGTGTTTA 59.665 37.037 12.32 12.32 44.13 2.01
2058 2314 8.723311 CCTCCGTAAACAAATATGAGTGTTTAA 58.277 33.333 15.73 5.88 46.36 1.52
2086 2342 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2087 2343 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2088 2344 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2089 2345 9.224058 CTAAAGTAGTGATCTAAACGCTCTTAC 57.776 37.037 0.00 0.00 0.00 2.34
2090 2346 6.754702 AGTAGTGATCTAAACGCTCTTACA 57.245 37.500 0.00 0.00 0.00 2.41
2091 2347 7.336161 AGTAGTGATCTAAACGCTCTTACAT 57.664 36.000 0.00 0.00 0.00 2.29
2092 2348 7.773149 AGTAGTGATCTAAACGCTCTTACATT 58.227 34.615 0.00 0.00 0.00 2.71
2093 2349 8.251721 AGTAGTGATCTAAACGCTCTTACATTT 58.748 33.333 0.00 0.00 0.00 2.32
2094 2350 7.295952 AGTGATCTAAACGCTCTTACATTTG 57.704 36.000 0.00 0.00 0.00 2.32
2095 2351 6.874134 AGTGATCTAAACGCTCTTACATTTGT 59.126 34.615 0.00 0.00 0.00 2.83
2096 2352 7.063544 AGTGATCTAAACGCTCTTACATTTGTC 59.936 37.037 0.00 0.00 0.00 3.18
2097 2353 7.063544 GTGATCTAAACGCTCTTACATTTGTCT 59.936 37.037 0.00 0.00 0.00 3.41
2098 2354 8.248253 TGATCTAAACGCTCTTACATTTGTCTA 58.752 33.333 0.00 0.00 0.00 2.59
2099 2355 7.807687 TCTAAACGCTCTTACATTTGTCTAC 57.192 36.000 0.00 0.00 0.00 2.59
2100 2356 7.372714 TCTAAACGCTCTTACATTTGTCTACA 58.627 34.615 0.00 0.00 0.00 2.74
2101 2357 6.467723 AAACGCTCTTACATTTGTCTACAG 57.532 37.500 0.00 0.00 0.00 2.74
2102 2358 5.386958 ACGCTCTTACATTTGTCTACAGA 57.613 39.130 0.00 0.00 0.00 3.41
2103 2359 5.779922 ACGCTCTTACATTTGTCTACAGAA 58.220 37.500 0.00 0.00 0.00 3.02
2104 2360 5.864474 ACGCTCTTACATTTGTCTACAGAAG 59.136 40.000 0.00 0.00 0.00 2.85
2105 2361 5.289675 CGCTCTTACATTTGTCTACAGAAGG 59.710 44.000 0.00 0.00 0.00 3.46
2106 2362 6.398918 GCTCTTACATTTGTCTACAGAAGGA 58.601 40.000 0.00 0.00 0.00 3.36
2107 2363 6.533367 GCTCTTACATTTGTCTACAGAAGGAG 59.467 42.308 0.00 0.00 0.00 3.69
2108 2364 6.398918 TCTTACATTTGTCTACAGAAGGAGC 58.601 40.000 0.00 0.00 0.00 4.70
2111 2367 6.299805 ACATTTGTCTACAGAAGGAGCATA 57.700 37.500 0.00 0.00 0.00 3.14
2175 2498 8.378172 TGTATGGAAGCAATTACAATACTAGC 57.622 34.615 0.00 0.00 0.00 3.42
2271 2594 1.082692 CGCGATCGACGTAGCTCAT 60.083 57.895 21.57 0.00 44.60 2.90
2284 2607 1.504912 AGCTCATGCCATCACCTACT 58.495 50.000 0.00 0.00 40.80 2.57
2304 2627 2.081725 TGCACGAATACGCAGGTAAA 57.918 45.000 0.00 0.00 43.96 2.01
2319 2643 5.136105 GCAGGTAAATCCAATCAGATCCTT 58.864 41.667 0.00 0.00 39.02 3.36
2337 2661 4.823157 TCCTTGAAATGGCATTGTTCATG 58.177 39.130 14.47 15.19 31.66 3.07
2350 2674 4.574674 TTGTTCATGCTTCATACTCCCT 57.425 40.909 0.00 0.00 0.00 4.20
2352 2676 3.118261 TGTTCATGCTTCATACTCCCTCC 60.118 47.826 0.00 0.00 0.00 4.30
2353 2677 2.763039 TCATGCTTCATACTCCCTCCA 58.237 47.619 0.00 0.00 0.00 3.86
2354 2678 3.321039 TCATGCTTCATACTCCCTCCAT 58.679 45.455 0.00 0.00 0.00 3.41
2355 2679 3.718434 TCATGCTTCATACTCCCTCCATT 59.282 43.478 0.00 0.00 0.00 3.16
2356 2680 4.166725 TCATGCTTCATACTCCCTCCATTT 59.833 41.667 0.00 0.00 0.00 2.32
2357 2681 4.156455 TGCTTCATACTCCCTCCATTTC 57.844 45.455 0.00 0.00 0.00 2.17
2358 2682 3.523157 TGCTTCATACTCCCTCCATTTCA 59.477 43.478 0.00 0.00 0.00 2.69
2359 2683 4.018506 TGCTTCATACTCCCTCCATTTCAA 60.019 41.667 0.00 0.00 0.00 2.69
2360 2684 4.949856 GCTTCATACTCCCTCCATTTCAAA 59.050 41.667 0.00 0.00 0.00 2.69
2361 2685 5.418840 GCTTCATACTCCCTCCATTTCAAAA 59.581 40.000 0.00 0.00 0.00 2.44
2362 2686 6.097412 GCTTCATACTCCCTCCATTTCAAAAT 59.903 38.462 0.00 0.00 0.00 1.82
2363 2687 7.285401 GCTTCATACTCCCTCCATTTCAAAATA 59.715 37.037 0.00 0.00 0.00 1.40
2364 2688 8.752005 TTCATACTCCCTCCATTTCAAAATAG 57.248 34.615 0.00 0.00 0.00 1.73
2365 2689 8.101309 TCATACTCCCTCCATTTCAAAATAGA 57.899 34.615 0.00 0.00 0.00 1.98
2366 2690 8.727149 TCATACTCCCTCCATTTCAAAATAGAT 58.273 33.333 0.00 0.00 0.00 1.98
2367 2691 8.790718 CATACTCCCTCCATTTCAAAATAGATG 58.209 37.037 0.00 0.00 0.00 2.90
2368 2692 6.973642 ACTCCCTCCATTTCAAAATAGATGA 58.026 36.000 0.00 0.00 0.00 2.92
2369 2693 6.830838 ACTCCCTCCATTTCAAAATAGATGAC 59.169 38.462 0.00 0.00 0.00 3.06
2370 2694 6.129179 TCCCTCCATTTCAAAATAGATGACC 58.871 40.000 0.00 0.00 0.00 4.02
2371 2695 5.302823 CCCTCCATTTCAAAATAGATGACCC 59.697 44.000 0.00 0.00 0.00 4.46
2372 2696 5.893255 CCTCCATTTCAAAATAGATGACCCA 59.107 40.000 0.00 0.00 0.00 4.51
2373 2697 6.380846 CCTCCATTTCAAAATAGATGACCCAA 59.619 38.462 0.00 0.00 0.00 4.12
2374 2698 7.169158 TCCATTTCAAAATAGATGACCCAAC 57.831 36.000 0.00 0.00 0.00 3.77
2375 2699 6.953520 TCCATTTCAAAATAGATGACCCAACT 59.046 34.615 0.00 0.00 0.00 3.16
2376 2700 7.454380 TCCATTTCAAAATAGATGACCCAACTT 59.546 33.333 0.00 0.00 0.00 2.66
2377 2701 8.096414 CCATTTCAAAATAGATGACCCAACTTT 58.904 33.333 0.00 0.00 0.00 2.66
2378 2702 8.928733 CATTTCAAAATAGATGACCCAACTTTG 58.071 33.333 0.00 0.00 0.00 2.77
2379 2703 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2380 2704 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2381 2705 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
2382 2706 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
2383 2707 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2384 2708 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2385 2709 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
2386 2710 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
2387 2711 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
2389 2713 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
2390 2714 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
2391 2715 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
2392 2716 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
2393 2717 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
2438 2838 5.104776 AGTGAAAGATGATAGGCAGTAGCAA 60.105 40.000 0.00 0.00 44.61 3.91
2470 2873 4.952957 TGGTGATTGTCTGAACTTGGAAAA 59.047 37.500 0.00 0.00 0.00 2.29
2472 2875 5.922544 GGTGATTGTCTGAACTTGGAAAATG 59.077 40.000 0.00 0.00 0.00 2.32
2474 2877 6.638468 GTGATTGTCTGAACTTGGAAAATGAC 59.362 38.462 0.00 0.00 0.00 3.06
2475 2878 6.320926 TGATTGTCTGAACTTGGAAAATGACA 59.679 34.615 0.00 0.00 0.00 3.58
2476 2879 5.499139 TGTCTGAACTTGGAAAATGACAC 57.501 39.130 0.00 0.00 0.00 3.67
2477 2880 4.946772 TGTCTGAACTTGGAAAATGACACA 59.053 37.500 0.00 0.00 0.00 3.72
2478 2881 5.417266 TGTCTGAACTTGGAAAATGACACAA 59.583 36.000 0.00 0.00 0.00 3.33
2488 2891 1.340088 AATGACACAAGGCATGGCAA 58.660 45.000 22.64 0.00 38.97 4.52
2489 2892 1.563924 ATGACACAAGGCATGGCAAT 58.436 45.000 22.64 6.92 38.97 3.56
2499 2902 1.885157 CATGGCAATGCAGAACGGT 59.115 52.632 7.79 0.00 0.00 4.83
2546 2949 4.988598 AACGTGCTGCTGACGGGG 62.989 66.667 15.48 0.00 41.21 5.73
3070 3485 0.792640 GTTAGCCGATGATGATGCCG 59.207 55.000 0.00 0.00 0.00 5.69
3074 3489 3.417224 CGATGATGATGCCGCCGG 61.417 66.667 0.00 0.00 0.00 6.13
3085 3500 4.039357 CCGCCGGCTCGATCGTAT 62.039 66.667 26.68 0.00 0.00 3.06
3086 3501 2.801162 CGCCGGCTCGATCGTATG 60.801 66.667 26.68 7.98 0.00 2.39
3087 3502 2.335369 GCCGGCTCGATCGTATGT 59.665 61.111 22.15 0.00 0.00 2.29
3088 3503 1.577922 GCCGGCTCGATCGTATGTA 59.422 57.895 22.15 0.00 0.00 2.29
3089 3504 0.170561 GCCGGCTCGATCGTATGTAT 59.829 55.000 22.15 0.00 0.00 2.29
3090 3505 1.794437 GCCGGCTCGATCGTATGTATC 60.794 57.143 22.15 0.00 0.00 2.24
3091 3506 1.202154 CCGGCTCGATCGTATGTATCC 60.202 57.143 15.94 0.00 0.00 2.59
3092 3507 1.467342 CGGCTCGATCGTATGTATCCA 59.533 52.381 15.94 0.00 0.00 3.41
3093 3508 2.095415 CGGCTCGATCGTATGTATCCAA 60.095 50.000 15.94 0.00 0.00 3.53
3114 3529 3.404224 TCCACACGTGTATAGCCAAAA 57.596 42.857 22.90 0.00 0.00 2.44
3136 3551 1.059942 GCCGTGCTTTGGAAAATTCG 58.940 50.000 0.00 0.00 0.00 3.34
3145 3584 5.695816 TGCTTTGGAAAATTCGGAAGATTTG 59.304 36.000 8.49 0.00 41.60 2.32
3151 3590 5.696270 GGAAAATTCGGAAGATTTGCAGTTT 59.304 36.000 14.23 0.00 41.60 2.66
3153 3592 6.769608 AAATTCGGAAGATTTGCAGTTTTC 57.230 33.333 0.00 0.00 41.60 2.29
3156 3595 4.858935 TCGGAAGATTTGCAGTTTTCTTG 58.141 39.130 7.10 1.42 33.31 3.02
3160 3608 6.074676 CGGAAGATTTGCAGTTTTCTTGAAAG 60.075 38.462 7.10 0.00 0.00 2.62
3164 3612 7.775120 AGATTTGCAGTTTTCTTGAAAGAAGA 58.225 30.769 5.68 0.00 45.01 2.87
3178 3626 9.477484 TCTTGAAAGAAGATTACTACACTTGTC 57.523 33.333 0.00 0.00 30.73 3.18
3182 3630 8.608844 AAAGAAGATTACTACACTTGTCAAGG 57.391 34.615 16.85 8.26 0.00 3.61
3190 3638 5.258051 ACTACACTTGTCAAGGGAAACAAA 58.742 37.500 21.80 0.00 35.13 2.83
3193 3641 6.783708 ACACTTGTCAAGGGAAACAAATTA 57.216 33.333 21.80 0.00 35.13 1.40
3194 3642 7.360113 ACACTTGTCAAGGGAAACAAATTAT 57.640 32.000 21.80 0.00 35.13 1.28
3195 3643 7.209475 ACACTTGTCAAGGGAAACAAATTATG 58.791 34.615 21.80 5.74 35.13 1.90
3196 3644 7.069331 ACACTTGTCAAGGGAAACAAATTATGA 59.931 33.333 21.80 0.00 35.13 2.15
3198 3646 8.650490 ACTTGTCAAGGGAAACAAATTATGAAT 58.350 29.630 16.85 0.00 35.13 2.57
3200 3648 9.921637 TTGTCAAGGGAAACAAATTATGAATAC 57.078 29.630 0.00 0.00 32.69 1.89
3201 3649 8.240682 TGTCAAGGGAAACAAATTATGAATACG 58.759 33.333 0.00 0.00 0.00 3.06
3202 3650 8.241367 GTCAAGGGAAACAAATTATGAATACGT 58.759 33.333 0.00 0.00 0.00 3.57
3203 3651 9.451002 TCAAGGGAAACAAATTATGAATACGTA 57.549 29.630 0.00 0.00 0.00 3.57
3211 3660 8.007821 ACAAATTATGAATACGTATCTCGCAG 57.992 34.615 8.86 0.00 44.19 5.18
3245 3694 8.744568 AAATTTTGAACAAATAAGGCAAAGGA 57.255 26.923 0.82 0.00 31.10 3.36
3246 3695 8.922931 AATTTTGAACAAATAAGGCAAAGGAT 57.077 26.923 0.82 0.00 31.10 3.24
3247 3696 7.961325 TTTTGAACAAATAAGGCAAAGGATC 57.039 32.000 0.82 0.00 31.10 3.36
3248 3697 6.916360 TTGAACAAATAAGGCAAAGGATCT 57.084 33.333 0.00 0.00 0.00 2.75
3249 3698 6.271488 TGAACAAATAAGGCAAAGGATCTG 57.729 37.500 0.00 0.00 0.00 2.90
3251 3700 4.934356 ACAAATAAGGCAAAGGATCTGGA 58.066 39.130 0.00 0.00 0.00 3.86
3252 3701 4.952335 ACAAATAAGGCAAAGGATCTGGAG 59.048 41.667 0.00 0.00 0.00 3.86
3253 3702 3.872459 ATAAGGCAAAGGATCTGGAGG 57.128 47.619 0.00 0.00 0.00 4.30
3254 3703 1.673767 AAGGCAAAGGATCTGGAGGA 58.326 50.000 0.00 0.00 0.00 3.71
3255 3704 1.673767 AGGCAAAGGATCTGGAGGAA 58.326 50.000 0.00 0.00 0.00 3.36
3256 3705 1.995542 AGGCAAAGGATCTGGAGGAAA 59.004 47.619 0.00 0.00 0.00 3.13
3257 3706 2.584498 AGGCAAAGGATCTGGAGGAAAT 59.416 45.455 0.00 0.00 0.00 2.17
3258 3707 2.954989 GGCAAAGGATCTGGAGGAAATC 59.045 50.000 0.00 0.00 0.00 2.17
3259 3708 3.372458 GGCAAAGGATCTGGAGGAAATCT 60.372 47.826 0.00 0.00 0.00 2.40
3260 3709 3.882288 GCAAAGGATCTGGAGGAAATCTC 59.118 47.826 0.00 0.00 41.71 2.75
3261 3710 4.385088 GCAAAGGATCTGGAGGAAATCTCT 60.385 45.833 0.00 0.00 42.10 3.10
3262 3711 5.163258 GCAAAGGATCTGGAGGAAATCTCTA 60.163 44.000 0.00 0.00 42.10 2.43
3271 3720 6.935240 TGGAGGAAATCTCTAGAAAGACAA 57.065 37.500 0.00 0.00 42.10 3.18
3272 3721 7.316393 TGGAGGAAATCTCTAGAAAGACAAA 57.684 36.000 0.00 0.00 42.10 2.83
3273 3722 7.922382 TGGAGGAAATCTCTAGAAAGACAAAT 58.078 34.615 0.00 0.00 42.10 2.32
3274 3723 9.046846 TGGAGGAAATCTCTAGAAAGACAAATA 57.953 33.333 0.00 0.00 42.10 1.40
3288 3737 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
3289 3738 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
3290 3739 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
3291 3740 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
3292 3741 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
3293 3742 7.854337 ACAAATATTTAGAAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
3294 3743 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
3295 3744 7.672122 AATATTTAGAAACGGAGGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
3296 3745 8.773033 AATATTTAGAAACGGAGGGAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
3297 3746 5.904362 TTTAGAAACGGAGGGAGTAGTAC 57.096 43.478 0.00 0.00 0.00 2.73
3298 3747 3.446442 AGAAACGGAGGGAGTAGTACA 57.554 47.619 2.52 0.00 0.00 2.90
3299 3748 3.771216 AGAAACGGAGGGAGTAGTACAA 58.229 45.455 2.52 0.00 0.00 2.41
3300 3749 4.351127 AGAAACGGAGGGAGTAGTACAAT 58.649 43.478 2.52 0.00 0.00 2.71
3301 3750 4.776308 AGAAACGGAGGGAGTAGTACAATT 59.224 41.667 2.52 0.00 0.00 2.32
3302 3751 5.247792 AGAAACGGAGGGAGTAGTACAATTT 59.752 40.000 2.52 0.00 0.00 1.82
3303 3752 4.467198 ACGGAGGGAGTAGTACAATTTG 57.533 45.455 2.52 0.00 0.00 2.32
3304 3753 4.091549 ACGGAGGGAGTAGTACAATTTGA 58.908 43.478 2.79 0.00 0.00 2.69
3305 3754 4.159879 ACGGAGGGAGTAGTACAATTTGAG 59.840 45.833 2.79 0.00 0.00 3.02
3306 3755 4.401519 CGGAGGGAGTAGTACAATTTGAGA 59.598 45.833 2.79 0.00 0.00 3.27
3307 3756 5.105473 CGGAGGGAGTAGTACAATTTGAGAA 60.105 44.000 2.79 0.00 0.00 2.87
3308 3757 6.407074 CGGAGGGAGTAGTACAATTTGAGAAT 60.407 42.308 2.79 0.00 0.00 2.40
3309 3758 7.201884 CGGAGGGAGTAGTACAATTTGAGAATA 60.202 40.741 2.79 0.00 0.00 1.75
3310 3759 8.483758 GGAGGGAGTAGTACAATTTGAGAATAA 58.516 37.037 2.79 0.00 0.00 1.40
3311 3760 9.886132 GAGGGAGTAGTACAATTTGAGAATAAA 57.114 33.333 2.79 0.00 0.00 1.40
3335 3784 9.512588 AAAATTACATTATGTTTTTCCATGCCA 57.487 25.926 2.23 0.00 0.00 4.92
3336 3785 8.491331 AATTACATTATGTTTTTCCATGCCAC 57.509 30.769 2.23 0.00 0.00 5.01
3337 3786 5.480642 ACATTATGTTTTTCCATGCCACA 57.519 34.783 0.00 0.00 0.00 4.17
3338 3787 6.052405 ACATTATGTTTTTCCATGCCACAT 57.948 33.333 0.00 0.00 32.80 3.21
3339 3788 7.180322 ACATTATGTTTTTCCATGCCACATA 57.820 32.000 0.00 0.00 30.70 2.29
3340 3789 7.794041 ACATTATGTTTTTCCATGCCACATAT 58.206 30.769 0.00 0.00 31.91 1.78
3341 3790 8.266473 ACATTATGTTTTTCCATGCCACATATT 58.734 29.630 0.00 0.00 31.91 1.28
3342 3791 8.767085 CATTATGTTTTTCCATGCCACATATTC 58.233 33.333 0.00 0.00 31.91 1.75
3343 3792 5.735285 TGTTTTTCCATGCCACATATTCA 57.265 34.783 0.00 0.00 0.00 2.57
3344 3793 5.722263 TGTTTTTCCATGCCACATATTCAG 58.278 37.500 0.00 0.00 0.00 3.02
3345 3794 5.245751 TGTTTTTCCATGCCACATATTCAGT 59.754 36.000 0.00 0.00 0.00 3.41
3346 3795 5.999205 TTTTCCATGCCACATATTCAGTT 57.001 34.783 0.00 0.00 0.00 3.16
3347 3796 5.999205 TTTCCATGCCACATATTCAGTTT 57.001 34.783 0.00 0.00 0.00 2.66
3348 3797 5.999205 TTCCATGCCACATATTCAGTTTT 57.001 34.783 0.00 0.00 0.00 2.43
3349 3798 5.581126 TCCATGCCACATATTCAGTTTTC 57.419 39.130 0.00 0.00 0.00 2.29
3350 3799 4.402155 TCCATGCCACATATTCAGTTTTCC 59.598 41.667 0.00 0.00 0.00 3.13
3351 3800 4.160065 CCATGCCACATATTCAGTTTTCCA 59.840 41.667 0.00 0.00 0.00 3.53
3352 3801 5.163385 CCATGCCACATATTCAGTTTTCCAT 60.163 40.000 0.00 0.00 0.00 3.41
3353 3802 5.327616 TGCCACATATTCAGTTTTCCATG 57.672 39.130 0.00 0.00 0.00 3.66
3354 3803 4.771577 TGCCACATATTCAGTTTTCCATGT 59.228 37.500 0.00 0.00 0.00 3.21
3355 3804 5.245751 TGCCACATATTCAGTTTTCCATGTT 59.754 36.000 0.00 0.00 0.00 2.71
3356 3805 6.435591 TGCCACATATTCAGTTTTCCATGTTA 59.564 34.615 0.00 0.00 0.00 2.41
3357 3806 6.751888 GCCACATATTCAGTTTTCCATGTTAC 59.248 38.462 0.00 0.00 0.00 2.50
3358 3807 7.576666 GCCACATATTCAGTTTTCCATGTTACA 60.577 37.037 0.00 0.00 0.00 2.41
3359 3808 8.469200 CCACATATTCAGTTTTCCATGTTACAT 58.531 33.333 0.00 0.00 0.00 2.29
3360 3809 9.859427 CACATATTCAGTTTTCCATGTTACATT 57.141 29.630 0.00 0.00 0.00 2.71
3366 3815 9.906660 TTCAGTTTTCCATGTTACATTATGTTC 57.093 29.630 2.23 0.00 0.00 3.18
3367 3816 9.295825 TCAGTTTTCCATGTTACATTATGTTCT 57.704 29.630 2.23 0.00 0.00 3.01
3368 3817 9.912634 CAGTTTTCCATGTTACATTATGTTCTT 57.087 29.630 2.23 0.00 0.00 2.52
3370 3819 9.906660 GTTTTCCATGTTACATTATGTTCTTCA 57.093 29.630 2.23 0.00 0.00 3.02
3372 3821 8.862325 TTCCATGTTACATTATGTTCTTCAGT 57.138 30.769 2.23 0.00 0.00 3.41
3373 3822 8.862325 TCCATGTTACATTATGTTCTTCAGTT 57.138 30.769 2.23 0.00 0.00 3.16
3374 3823 9.295825 TCCATGTTACATTATGTTCTTCAGTTT 57.704 29.630 2.23 0.00 0.00 2.66
3375 3824 9.912634 CCATGTTACATTATGTTCTTCAGTTTT 57.087 29.630 2.23 0.00 0.00 2.43
3384 3833 5.581126 TGTTCTTCAGTTTTCATTGCAGT 57.419 34.783 0.00 0.00 0.00 4.40
3386 3835 6.035843 TGTTCTTCAGTTTTCATTGCAGTTC 58.964 36.000 0.00 0.00 0.00 3.01
3424 3873 2.723124 ATTACACAAAAGCCAAGCCG 57.277 45.000 0.00 0.00 0.00 5.52
3442 3891 2.735762 GCCGCTTATGAACTCGTCTTCT 60.736 50.000 0.00 0.00 0.00 2.85
3443 3892 3.488721 GCCGCTTATGAACTCGTCTTCTA 60.489 47.826 0.00 0.00 0.00 2.10
3444 3893 4.036352 CCGCTTATGAACTCGTCTTCTAC 58.964 47.826 0.00 0.00 0.00 2.59
3477 3926 7.901029 TGTATGCATATTTTGACCCAAGAAAA 58.099 30.769 10.16 0.00 0.00 2.29
3487 3936 6.648879 TTGACCCAAGAAAATAAAGACTGG 57.351 37.500 0.00 0.00 0.00 4.00
3492 3941 5.649831 CCCAAGAAAATAAAGACTGGGAGAG 59.350 44.000 0.00 0.00 36.22 3.20
3526 3975 1.048724 TTCCCCGGTAGCATCTCAGG 61.049 60.000 0.00 0.00 0.00 3.86
3528 3977 1.443407 CCCGGTAGCATCTCAGGTG 59.557 63.158 0.00 0.00 0.00 4.00
3545 3994 0.450184 GTGTCACGCACAAAAGTGGT 59.550 50.000 0.00 0.00 46.91 4.16
3587 4036 4.351192 CCTTGGAAAGTTGACTGAAAACG 58.649 43.478 0.00 0.00 44.25 3.60
3631 4080 5.885912 ACTGGTGCAAGTATAAATGGGTTAG 59.114 40.000 0.00 0.00 0.00 2.34
3681 4167 7.416964 ACAACAAAGGCCAGCATATATTTTA 57.583 32.000 5.01 0.00 0.00 1.52
3737 4223 4.156739 CAGAAACCCAGCAGTTAAGAATCC 59.843 45.833 0.00 0.00 0.00 3.01
3759 4245 2.730094 CCTTGTGGCCTTGCACAC 59.270 61.111 3.32 0.00 38.08 3.82
3882 4385 2.908088 GAACAGCGCGGCACATCATG 62.908 60.000 8.83 0.00 0.00 3.07
3936 4441 8.310382 TCACAAAATTCTTCCTCAAAACTCAAA 58.690 29.630 0.00 0.00 0.00 2.69
3998 4503 4.631234 ACTAGTTAACTGATGGATGGGGA 58.369 43.478 18.56 0.00 0.00 4.81
3999 4504 4.656112 ACTAGTTAACTGATGGATGGGGAG 59.344 45.833 18.56 5.33 0.00 4.30
4000 4505 2.173569 AGTTAACTGATGGATGGGGAGC 59.826 50.000 7.48 0.00 0.00 4.70
4019 4524 0.947244 CAGCGGCATACAGGATTTCC 59.053 55.000 1.45 0.00 0.00 3.13
4020 4525 0.546122 AGCGGCATACAGGATTTCCA 59.454 50.000 1.45 0.00 38.89 3.53
4030 4535 3.294214 ACAGGATTTCCAATCTCATGGC 58.706 45.455 0.00 0.00 40.46 4.40
4051 4556 3.695606 GACTGCGCTCACTCCCCA 61.696 66.667 9.73 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.822164 CCGGGTCGAACTCATAACCT 59.178 55.000 0.00 0.00 32.22 3.50
1 2 0.533951 ACCGGGTCGAACTCATAACC 59.466 55.000 6.32 0.00 0.00 2.85
2 3 1.636988 CACCGGGTCGAACTCATAAC 58.363 55.000 6.32 0.00 0.00 1.89
3 4 0.108520 GCACCGGGTCGAACTCATAA 60.109 55.000 6.32 0.00 0.00 1.90
4 5 0.968901 AGCACCGGGTCGAACTCATA 60.969 55.000 6.32 0.00 0.00 2.15
5 6 0.968901 TAGCACCGGGTCGAACTCAT 60.969 55.000 6.32 0.00 0.00 2.90
6 7 1.592400 CTAGCACCGGGTCGAACTCA 61.592 60.000 6.32 0.00 0.00 3.41
7 8 1.139095 CTAGCACCGGGTCGAACTC 59.861 63.158 6.32 0.00 0.00 3.01
8 9 1.605738 ACTAGCACCGGGTCGAACT 60.606 57.895 6.32 0.00 0.00 3.01
9 10 1.445582 CACTAGCACCGGGTCGAAC 60.446 63.158 6.32 0.00 0.00 3.95
10 11 1.466025 AACACTAGCACCGGGTCGAA 61.466 55.000 6.32 0.00 0.00 3.71
11 12 1.870055 GAACACTAGCACCGGGTCGA 61.870 60.000 6.32 0.00 0.00 4.20
12 13 1.445582 GAACACTAGCACCGGGTCG 60.446 63.158 6.32 0.00 0.00 4.79
13 14 0.320697 AAGAACACTAGCACCGGGTC 59.679 55.000 6.32 0.00 0.00 4.46
14 15 1.636148 TAAGAACACTAGCACCGGGT 58.364 50.000 6.32 0.00 0.00 5.28
15 16 2.754946 TTAAGAACACTAGCACCGGG 57.245 50.000 6.32 0.00 0.00 5.73
16 17 5.622770 AAAATTAAGAACACTAGCACCGG 57.377 39.130 0.00 0.00 0.00 5.28
17 18 6.084277 GGAAAAATTAAGAACACTAGCACCG 58.916 40.000 0.00 0.00 0.00 4.94
18 19 6.977213 TGGAAAAATTAAGAACACTAGCACC 58.023 36.000 0.00 0.00 0.00 5.01
19 20 6.582672 GCTGGAAAAATTAAGAACACTAGCAC 59.417 38.462 0.00 0.00 32.53 4.40
20 21 6.264292 TGCTGGAAAAATTAAGAACACTAGCA 59.736 34.615 0.00 0.00 38.02 3.49
21 22 6.677913 TGCTGGAAAAATTAAGAACACTAGC 58.322 36.000 0.00 0.00 0.00 3.42
22 23 9.696917 AAATGCTGGAAAAATTAAGAACACTAG 57.303 29.630 0.00 0.00 0.00 2.57
24 25 8.962884 AAAATGCTGGAAAAATTAAGAACACT 57.037 26.923 0.00 0.00 0.00 3.55
29 30 9.705290 GAGGTAAAAATGCTGGAAAAATTAAGA 57.295 29.630 0.00 0.00 0.00 2.10
30 31 8.647226 CGAGGTAAAAATGCTGGAAAAATTAAG 58.353 33.333 0.00 0.00 0.00 1.85
31 32 7.117092 GCGAGGTAAAAATGCTGGAAAAATTAA 59.883 33.333 0.00 0.00 0.00 1.40
32 33 6.588373 GCGAGGTAAAAATGCTGGAAAAATTA 59.412 34.615 0.00 0.00 0.00 1.40
33 34 5.408299 GCGAGGTAAAAATGCTGGAAAAATT 59.592 36.000 0.00 0.00 0.00 1.82
34 35 4.929211 GCGAGGTAAAAATGCTGGAAAAAT 59.071 37.500 0.00 0.00 0.00 1.82
35 36 4.303282 GCGAGGTAAAAATGCTGGAAAAA 58.697 39.130 0.00 0.00 0.00 1.94
36 37 3.610585 CGCGAGGTAAAAATGCTGGAAAA 60.611 43.478 0.00 0.00 0.00 2.29
37 38 2.095466 CGCGAGGTAAAAATGCTGGAAA 60.095 45.455 0.00 0.00 0.00 3.13
38 39 1.466950 CGCGAGGTAAAAATGCTGGAA 59.533 47.619 0.00 0.00 0.00 3.53
39 40 1.083489 CGCGAGGTAAAAATGCTGGA 58.917 50.000 0.00 0.00 0.00 3.86
40 41 0.523335 GCGCGAGGTAAAAATGCTGG 60.523 55.000 12.10 0.00 0.00 4.85
41 42 0.857311 CGCGCGAGGTAAAAATGCTG 60.857 55.000 28.94 0.00 0.00 4.41
42 43 1.423845 CGCGCGAGGTAAAAATGCT 59.576 52.632 28.94 0.00 0.00 3.79
43 44 2.214948 GCGCGCGAGGTAAAAATGC 61.215 57.895 37.18 6.90 0.00 3.56
44 45 3.962399 GCGCGCGAGGTAAAAATG 58.038 55.556 37.18 0.00 0.00 2.32
57 58 4.757354 TTGCCATTTGAGCGCGCG 62.757 61.111 28.44 28.44 0.00 6.86
58 59 2.877582 CTTGCCATTTGAGCGCGC 60.878 61.111 26.66 26.66 0.00 6.86
59 60 1.798725 CACTTGCCATTTGAGCGCG 60.799 57.895 0.00 0.00 0.00 6.86
60 61 1.444895 CCACTTGCCATTTGAGCGC 60.445 57.895 0.00 0.00 0.00 5.92
61 62 1.444895 GCCACTTGCCATTTGAGCG 60.445 57.895 0.00 0.00 0.00 5.03
62 63 4.584688 GCCACTTGCCATTTGAGC 57.415 55.556 0.00 0.00 0.00 4.26
85 86 3.835790 TACGGTGCACAACTGGGCC 62.836 63.158 20.43 0.00 45.73 5.80
86 87 1.644786 GATACGGTGCACAACTGGGC 61.645 60.000 20.43 0.00 46.69 5.36
87 88 1.024579 GGATACGGTGCACAACTGGG 61.025 60.000 20.43 2.57 39.74 4.45
88 89 2.466867 GGATACGGTGCACAACTGG 58.533 57.895 20.43 4.42 39.74 4.00
119 120 9.384764 CCTTTGAGTTATTTTTGTTTTTGGGTA 57.615 29.630 0.00 0.00 0.00 3.69
120 121 7.885922 ACCTTTGAGTTATTTTTGTTTTTGGGT 59.114 29.630 0.00 0.00 0.00 4.51
121 122 8.180920 CACCTTTGAGTTATTTTTGTTTTTGGG 58.819 33.333 0.00 0.00 0.00 4.12
122 123 8.940952 TCACCTTTGAGTTATTTTTGTTTTTGG 58.059 29.630 0.00 0.00 0.00 3.28
125 126 9.665719 ACATCACCTTTGAGTTATTTTTGTTTT 57.334 25.926 0.00 0.00 34.35 2.43
127 128 9.744468 GTACATCACCTTTGAGTTATTTTTGTT 57.256 29.630 0.00 0.00 34.35 2.83
128 129 9.131791 AGTACATCACCTTTGAGTTATTTTTGT 57.868 29.630 0.00 0.00 34.35 2.83
129 130 9.965824 AAGTACATCACCTTTGAGTTATTTTTG 57.034 29.630 0.00 0.00 34.35 2.44
132 133 9.574516 AGAAAGTACATCACCTTTGAGTTATTT 57.425 29.630 0.00 0.00 34.35 1.40
136 137 8.974060 TTTAGAAAGTACATCACCTTTGAGTT 57.026 30.769 0.00 0.00 34.35 3.01
137 138 9.003658 CATTTAGAAAGTACATCACCTTTGAGT 57.996 33.333 0.00 0.00 34.35 3.41
138 139 9.219603 TCATTTAGAAAGTACATCACCTTTGAG 57.780 33.333 0.00 0.00 34.35 3.02
139 140 8.999431 GTCATTTAGAAAGTACATCACCTTTGA 58.001 33.333 0.00 0.00 35.73 2.69
140 141 8.237267 GGTCATTTAGAAAGTACATCACCTTTG 58.763 37.037 0.00 0.00 0.00 2.77
141 142 7.942341 TGGTCATTTAGAAAGTACATCACCTTT 59.058 33.333 0.00 0.00 0.00 3.11
142 143 7.458397 TGGTCATTTAGAAAGTACATCACCTT 58.542 34.615 0.00 0.00 0.00 3.50
143 144 7.016153 TGGTCATTTAGAAAGTACATCACCT 57.984 36.000 0.00 0.00 0.00 4.00
144 145 7.254455 CGATGGTCATTTAGAAAGTACATCACC 60.254 40.741 0.00 0.00 0.00 4.02
145 146 7.277981 ACGATGGTCATTTAGAAAGTACATCAC 59.722 37.037 0.00 0.00 0.00 3.06
146 147 7.277760 CACGATGGTCATTTAGAAAGTACATCA 59.722 37.037 0.00 0.00 0.00 3.07
147 148 7.621991 CACGATGGTCATTTAGAAAGTACATC 58.378 38.462 0.00 0.00 0.00 3.06
148 149 6.037172 GCACGATGGTCATTTAGAAAGTACAT 59.963 38.462 0.00 0.00 0.00 2.29
149 150 5.350365 GCACGATGGTCATTTAGAAAGTACA 59.650 40.000 0.00 0.00 0.00 2.90
150 151 5.581085 AGCACGATGGTCATTTAGAAAGTAC 59.419 40.000 0.00 0.00 0.00 2.73
151 152 5.730550 AGCACGATGGTCATTTAGAAAGTA 58.269 37.500 0.00 0.00 0.00 2.24
152 153 4.579869 AGCACGATGGTCATTTAGAAAGT 58.420 39.130 0.00 0.00 0.00 2.66
153 154 4.872691 AGAGCACGATGGTCATTTAGAAAG 59.127 41.667 15.91 0.00 46.52 2.62
154 155 4.832248 AGAGCACGATGGTCATTTAGAAA 58.168 39.130 15.91 0.00 46.52 2.52
155 156 4.471904 AGAGCACGATGGTCATTTAGAA 57.528 40.909 15.91 0.00 46.52 2.10
156 157 4.471904 AAGAGCACGATGGTCATTTAGA 57.528 40.909 15.91 0.00 46.52 2.10
157 158 6.851222 ATAAAGAGCACGATGGTCATTTAG 57.149 37.500 15.91 0.00 46.52 1.85
158 159 8.773645 CATAATAAAGAGCACGATGGTCATTTA 58.226 33.333 15.91 15.43 46.52 1.40
159 160 7.498900 TCATAATAAAGAGCACGATGGTCATTT 59.501 33.333 15.91 14.35 46.52 2.32
160 161 6.992123 TCATAATAAAGAGCACGATGGTCATT 59.008 34.615 15.91 13.20 46.52 2.57
161 162 6.524734 TCATAATAAAGAGCACGATGGTCAT 58.475 36.000 15.91 5.02 46.52 3.06
162 163 5.912892 TCATAATAAAGAGCACGATGGTCA 58.087 37.500 15.91 0.99 46.52 4.02
163 164 6.073548 CCTTCATAATAAAGAGCACGATGGTC 60.074 42.308 8.52 8.52 44.62 4.02
164 165 5.760253 CCTTCATAATAAAGAGCACGATGGT 59.240 40.000 0.00 0.00 0.00 3.55
165 166 5.180117 CCCTTCATAATAAAGAGCACGATGG 59.820 44.000 0.00 0.00 0.00 3.51
166 167 5.180117 CCCCTTCATAATAAAGAGCACGATG 59.820 44.000 0.00 0.00 0.00 3.84
167 168 5.308825 CCCCTTCATAATAAAGAGCACGAT 58.691 41.667 0.00 0.00 0.00 3.73
168 169 4.703897 CCCCTTCATAATAAAGAGCACGA 58.296 43.478 0.00 0.00 0.00 4.35
169 170 3.251004 GCCCCTTCATAATAAAGAGCACG 59.749 47.826 0.00 0.00 0.00 5.34
170 171 4.207165 TGCCCCTTCATAATAAAGAGCAC 58.793 43.478 0.00 0.00 31.88 4.40
171 172 4.518278 TGCCCCTTCATAATAAAGAGCA 57.482 40.909 0.00 0.00 33.36 4.26
172 173 4.219288 CCATGCCCCTTCATAATAAAGAGC 59.781 45.833 0.00 0.00 0.00 4.09
173 174 4.768968 CCCATGCCCCTTCATAATAAAGAG 59.231 45.833 0.00 0.00 0.00 2.85
174 175 4.449081 CCCCATGCCCCTTCATAATAAAGA 60.449 45.833 0.00 0.00 0.00 2.52
175 176 3.834231 CCCCATGCCCCTTCATAATAAAG 59.166 47.826 0.00 0.00 0.00 1.85
176 177 3.208692 ACCCCATGCCCCTTCATAATAAA 59.791 43.478 0.00 0.00 0.00 1.40
177 178 2.794760 ACCCCATGCCCCTTCATAATAA 59.205 45.455 0.00 0.00 0.00 1.40
178 179 2.438223 ACCCCATGCCCCTTCATAATA 58.562 47.619 0.00 0.00 0.00 0.98
179 180 1.244366 ACCCCATGCCCCTTCATAAT 58.756 50.000 0.00 0.00 0.00 1.28
180 181 1.914272 TACCCCATGCCCCTTCATAA 58.086 50.000 0.00 0.00 0.00 1.90
181 182 1.914272 TTACCCCATGCCCCTTCATA 58.086 50.000 0.00 0.00 0.00 2.15
182 183 1.147817 GATTACCCCATGCCCCTTCAT 59.852 52.381 0.00 0.00 0.00 2.57
183 184 0.555769 GATTACCCCATGCCCCTTCA 59.444 55.000 0.00 0.00 0.00 3.02
184 185 0.853530 AGATTACCCCATGCCCCTTC 59.146 55.000 0.00 0.00 0.00 3.46
185 186 0.853530 GAGATTACCCCATGCCCCTT 59.146 55.000 0.00 0.00 0.00 3.95
186 187 0.328450 TGAGATTACCCCATGCCCCT 60.328 55.000 0.00 0.00 0.00 4.79
187 188 0.555769 TTGAGATTACCCCATGCCCC 59.444 55.000 0.00 0.00 0.00 5.80
188 189 1.215423 AGTTGAGATTACCCCATGCCC 59.785 52.381 0.00 0.00 0.00 5.36
189 190 2.301346 CAGTTGAGATTACCCCATGCC 58.699 52.381 0.00 0.00 0.00 4.40
190 191 3.004752 ACAGTTGAGATTACCCCATGC 57.995 47.619 0.00 0.00 0.00 4.06
191 192 6.603201 ACATTAACAGTTGAGATTACCCCATG 59.397 38.462 0.00 0.00 0.00 3.66
192 193 6.603201 CACATTAACAGTTGAGATTACCCCAT 59.397 38.462 0.00 0.00 0.00 4.00
193 194 5.943416 CACATTAACAGTTGAGATTACCCCA 59.057 40.000 0.00 0.00 0.00 4.96
194 195 5.944007 ACACATTAACAGTTGAGATTACCCC 59.056 40.000 0.00 0.00 0.00 4.95
195 196 7.448748 AACACATTAACAGTTGAGATTACCC 57.551 36.000 0.00 0.00 0.00 3.69
198 199 9.226606 CCCTAAACACATTAACAGTTGAGATTA 57.773 33.333 0.00 0.00 0.00 1.75
199 200 7.176690 CCCCTAAACACATTAACAGTTGAGATT 59.823 37.037 0.00 0.00 0.00 2.40
200 201 6.659242 CCCCTAAACACATTAACAGTTGAGAT 59.341 38.462 0.00 0.00 0.00 2.75
201 202 6.001460 CCCCTAAACACATTAACAGTTGAGA 58.999 40.000 0.00 0.00 0.00 3.27
202 203 5.183140 CCCCCTAAACACATTAACAGTTGAG 59.817 44.000 0.00 0.00 0.00 3.02
203 204 5.074115 CCCCCTAAACACATTAACAGTTGA 58.926 41.667 0.00 0.00 0.00 3.18
204 205 5.385509 CCCCCTAAACACATTAACAGTTG 57.614 43.478 0.00 0.00 0.00 3.16
223 224 3.846430 CCGCTTCGGTAGACCCCC 61.846 72.222 0.00 0.00 42.73 5.40
224 225 2.294132 CTTCCGCTTCGGTAGACCCC 62.294 65.000 6.09 0.00 45.08 4.95
225 226 1.141234 CTTCCGCTTCGGTAGACCC 59.859 63.158 6.09 0.00 45.08 4.46
226 227 0.458025 CACTTCCGCTTCGGTAGACC 60.458 60.000 16.71 0.00 45.08 3.85
227 228 0.524862 TCACTTCCGCTTCGGTAGAC 59.475 55.000 16.71 0.00 45.08 2.59
228 229 1.134367 CATCACTTCCGCTTCGGTAGA 59.866 52.381 16.71 6.55 45.08 2.59
233 234 1.156736 AAACCATCACTTCCGCTTCG 58.843 50.000 0.00 0.00 0.00 3.79
234 235 3.643159 AAAAACCATCACTTCCGCTTC 57.357 42.857 0.00 0.00 0.00 3.86
285 286 7.499321 AAGTGTTCACCAAATCATAACGTAA 57.501 32.000 0.00 0.00 0.00 3.18
329 339 4.261572 GGCTATCTATTTCGGCAATGCAAA 60.262 41.667 7.79 0.00 0.00 3.68
551 566 1.068588 CTCTGTCCCGTGAACACTTCA 59.931 52.381 3.51 0.00 37.33 3.02
590 605 5.480772 ACCGGTCTAAGGATATGAACATAGG 59.519 44.000 0.00 0.00 0.00 2.57
594 609 4.283337 TGACCGGTCTAAGGATATGAACA 58.717 43.478 33.39 7.46 0.00 3.18
608 623 5.591067 TGTAATGGGAATTTAATGACCGGTC 59.409 40.000 28.17 28.17 0.00 4.79
660 680 6.058183 GGTCATAAGTGGTGCTAATCATCTT 58.942 40.000 0.00 0.00 0.00 2.40
772 803 9.967245 GAAACTTTTATTTTTCGTTGCTTTTCT 57.033 25.926 0.00 0.00 0.00 2.52
900 938 1.456287 GGAGGTTGCAGGGTCAACT 59.544 57.895 6.59 0.00 44.19 3.16
939 977 5.186797 TGGGAAATTACGGAGCAATGATTTT 59.813 36.000 0.00 0.00 0.00 1.82
1069 1166 1.607628 CTTGCTGAAGTTGCTGAAGCT 59.392 47.619 3.61 0.00 42.66 3.74
1107 1204 2.123382 GAGGAGGAGGGGTACGGG 60.123 72.222 0.00 0.00 0.00 5.28
1110 1207 2.286213 GGGGAGGAGGAGGGGTAC 59.714 72.222 0.00 0.00 0.00 3.34
1121 1218 3.650298 TACGAGGTGTCCGGGGAGG 62.650 68.421 0.00 0.00 42.97 4.30
1165 1262 2.458006 GAAGAAAACGGGGCGCTGTG 62.458 60.000 16.92 1.24 0.00 3.66
1299 1397 1.079057 GACCTCCGGTTCTTGCTCC 60.079 63.158 0.00 0.00 35.25 4.70
1350 1448 0.710588 TCCTGCTCCCCTGAGAGTAA 59.289 55.000 0.00 0.00 41.42 2.24
1437 1537 6.096001 AGGAGGATCATGATTAACAAAACTGC 59.904 38.462 10.14 4.34 36.25 4.40
1440 1540 7.201767 CCAGAGGAGGATCATGATTAACAAAAC 60.202 40.741 10.14 0.00 36.25 2.43
1734 1847 9.801873 GTTGCCAAATATTACTATGATGTTTGT 57.198 29.630 0.00 0.00 35.26 2.83
1746 1859 5.449177 GCTCCTGACAGTTGCCAAATATTAC 60.449 44.000 0.93 0.00 0.00 1.89
1781 1919 5.458041 ACTGCAGCAACAAAATATTCAGT 57.542 34.783 15.27 0.00 0.00 3.41
1808 1963 5.204292 AGTTGAGCAGATAGATACTGACCA 58.796 41.667 0.00 0.00 37.54 4.02
1875 2030 1.481056 AACCCGAGGAACCTCACCAG 61.481 60.000 19.03 7.90 42.86 4.00
1974 2129 9.230122 TGAAATTAGAAATGTGAATGCAGAGTA 57.770 29.630 0.00 0.00 0.00 2.59
1976 2131 8.242053 ACTGAAATTAGAAATGTGAATGCAGAG 58.758 33.333 0.00 0.00 0.00 3.35
1978 2133 8.752766 AACTGAAATTAGAAATGTGAATGCAG 57.247 30.769 0.00 0.00 0.00 4.41
2004 2255 2.547299 TTTTTCTGGCAAATGCAGGG 57.453 45.000 7.80 0.00 44.36 4.45
2023 2279 9.720769 CATATTTGTTTACGGAGGGAGTATATT 57.279 33.333 0.00 0.00 0.00 1.28
2025 2281 8.481492 TCATATTTGTTTACGGAGGGAGTATA 57.519 34.615 0.00 0.00 0.00 1.47
2029 2285 5.523916 CACTCATATTTGTTTACGGAGGGAG 59.476 44.000 0.00 0.00 0.00 4.30
2031 2287 5.183228 ACACTCATATTTGTTTACGGAGGG 58.817 41.667 0.00 0.00 0.00 4.30
2062 2318 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2063 2319 9.224058 GTAAGAGCGTTTAGATCACTACTTTAG 57.776 37.037 0.00 0.00 37.82 1.85
2064 2320 8.733458 TGTAAGAGCGTTTAGATCACTACTTTA 58.267 33.333 0.00 0.00 37.82 1.85
2065 2321 7.600065 TGTAAGAGCGTTTAGATCACTACTTT 58.400 34.615 0.00 0.00 37.82 2.66
2066 2322 7.154435 TGTAAGAGCGTTTAGATCACTACTT 57.846 36.000 0.00 0.00 37.82 2.24
2067 2323 6.754702 TGTAAGAGCGTTTAGATCACTACT 57.245 37.500 0.00 0.00 37.82 2.57
2068 2324 7.988904 AATGTAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
2069 2325 8.033038 ACAAATGTAAGAGCGTTTAGATCACTA 58.967 33.333 0.00 0.00 37.82 2.74
2070 2326 6.874134 ACAAATGTAAGAGCGTTTAGATCACT 59.126 34.615 0.00 0.00 37.82 3.41
2071 2327 7.061752 ACAAATGTAAGAGCGTTTAGATCAC 57.938 36.000 0.00 0.00 37.82 3.06
2072 2328 7.097192 AGACAAATGTAAGAGCGTTTAGATCA 58.903 34.615 0.00 0.00 37.82 2.92
2073 2329 7.527084 AGACAAATGTAAGAGCGTTTAGATC 57.473 36.000 0.00 0.00 35.01 2.75
2074 2330 8.033038 TGTAGACAAATGTAAGAGCGTTTAGAT 58.967 33.333 0.00 0.00 0.00 1.98
2075 2331 7.372714 TGTAGACAAATGTAAGAGCGTTTAGA 58.627 34.615 0.00 0.00 0.00 2.10
2076 2332 7.541091 TCTGTAGACAAATGTAAGAGCGTTTAG 59.459 37.037 0.00 0.00 0.00 1.85
2077 2333 7.372714 TCTGTAGACAAATGTAAGAGCGTTTA 58.627 34.615 0.00 0.00 0.00 2.01
2078 2334 6.220930 TCTGTAGACAAATGTAAGAGCGTTT 58.779 36.000 0.00 0.00 0.00 3.60
2079 2335 5.779922 TCTGTAGACAAATGTAAGAGCGTT 58.220 37.500 0.00 0.00 0.00 4.84
2080 2336 5.386958 TCTGTAGACAAATGTAAGAGCGT 57.613 39.130 0.00 0.00 0.00 5.07
2081 2337 5.289675 CCTTCTGTAGACAAATGTAAGAGCG 59.710 44.000 0.00 0.00 0.00 5.03
2082 2338 6.398918 TCCTTCTGTAGACAAATGTAAGAGC 58.601 40.000 0.00 0.00 0.00 4.09
2083 2339 6.533367 GCTCCTTCTGTAGACAAATGTAAGAG 59.467 42.308 0.00 0.00 0.00 2.85
2084 2340 6.014584 TGCTCCTTCTGTAGACAAATGTAAGA 60.015 38.462 0.00 0.00 0.00 2.10
2085 2341 6.166279 TGCTCCTTCTGTAGACAAATGTAAG 58.834 40.000 0.00 0.00 0.00 2.34
2086 2342 6.109156 TGCTCCTTCTGTAGACAAATGTAA 57.891 37.500 0.00 0.00 0.00 2.41
2087 2343 5.738619 TGCTCCTTCTGTAGACAAATGTA 57.261 39.130 0.00 0.00 0.00 2.29
2088 2344 4.623932 TGCTCCTTCTGTAGACAAATGT 57.376 40.909 0.00 0.00 0.00 2.71
2089 2345 7.798596 AATATGCTCCTTCTGTAGACAAATG 57.201 36.000 0.00 0.00 0.00 2.32
2093 2349 9.588096 TCTAATAATATGCTCCTTCTGTAGACA 57.412 33.333 0.00 0.00 0.00 3.41
2103 2359 9.862371 CGTCACTATTTCTAATAATATGCTCCT 57.138 33.333 0.00 0.00 0.00 3.69
2104 2360 9.856488 TCGTCACTATTTCTAATAATATGCTCC 57.144 33.333 0.00 0.00 0.00 4.70
2146 2453 9.019656 AGTATTGTAATTGCTTCCATACAACAA 57.980 29.630 0.00 0.00 40.05 2.83
2147 2454 8.574251 AGTATTGTAATTGCTTCCATACAACA 57.426 30.769 0.00 0.00 40.05 3.33
2154 2461 7.109501 TCTTGCTAGTATTGTAATTGCTTCCA 58.890 34.615 0.00 0.00 0.00 3.53
2155 2462 7.553881 TCTTGCTAGTATTGTAATTGCTTCC 57.446 36.000 0.00 0.00 0.00 3.46
2169 2492 5.949952 TCTTGGTCAGTACATCTTGCTAGTA 59.050 40.000 0.00 0.00 0.00 1.82
2175 2498 6.402983 GCAGAAATCTTGGTCAGTACATCTTG 60.403 42.308 0.00 0.00 0.00 3.02
2265 2588 1.504912 AGTAGGTGATGGCATGAGCT 58.495 50.000 21.63 21.63 41.70 4.09
2271 2594 0.673333 CGTGCAAGTAGGTGATGGCA 60.673 55.000 0.00 0.00 0.00 4.92
2284 2607 2.081725 TTACCTGCGTATTCGTGCAA 57.918 45.000 0.00 0.00 41.22 4.08
2304 2627 4.587684 GCCATTTCAAGGATCTGATTGGAT 59.412 41.667 14.06 5.14 33.70 3.41
2337 2661 4.156455 TGAAATGGAGGGAGTATGAAGC 57.844 45.455 0.00 0.00 0.00 3.86
2344 2668 6.830838 GTCATCTATTTTGAAATGGAGGGAGT 59.169 38.462 12.38 0.00 38.91 3.85
2345 2669 6.264067 GGTCATCTATTTTGAAATGGAGGGAG 59.736 42.308 12.38 3.00 38.91 4.30
2346 2670 6.129179 GGTCATCTATTTTGAAATGGAGGGA 58.871 40.000 12.38 8.08 38.91 4.20
2347 2671 5.302823 GGGTCATCTATTTTGAAATGGAGGG 59.697 44.000 12.38 6.38 38.91 4.30
2348 2672 5.893255 TGGGTCATCTATTTTGAAATGGAGG 59.107 40.000 7.79 7.79 38.91 4.30
2350 2674 6.953520 AGTTGGGTCATCTATTTTGAAATGGA 59.046 34.615 5.21 5.21 39.67 3.41
2352 2676 8.928733 CAAAGTTGGGTCATCTATTTTGAAATG 58.071 33.333 0.00 0.00 0.00 2.32
2353 2677 8.650490 ACAAAGTTGGGTCATCTATTTTGAAAT 58.350 29.630 0.00 0.00 0.00 2.17
2354 2678 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
2355 2679 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
2356 2680 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
2357 2681 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2358 2682 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2359 2683 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
2360 2684 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
2361 2685 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
2362 2686 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
2363 2687 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
2364 2688 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
2365 2689 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
2366 2690 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
2367 2691 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
2394 2718 9.847224 TTTCACTTTCTCTGTTCCTTATTACTT 57.153 29.630 0.00 0.00 0.00 2.24
2399 2723 8.378565 TCATCTTTCACTTTCTCTGTTCCTTAT 58.621 33.333 0.00 0.00 0.00 1.73
2404 2728 7.201600 GCCTATCATCTTTCACTTTCTCTGTTC 60.202 40.741 0.00 0.00 0.00 3.18
2412 2736 5.819901 GCTACTGCCTATCATCTTTCACTTT 59.180 40.000 0.00 0.00 0.00 2.66
2438 2838 2.555325 CAGACAATCACCATGCACACTT 59.445 45.455 0.00 0.00 0.00 3.16
2470 2873 1.206132 CATTGCCATGCCTTGTGTCAT 59.794 47.619 0.00 0.00 0.00 3.06
2472 2875 3.429043 CATTGCCATGCCTTGTGTC 57.571 52.632 0.00 0.00 0.00 3.67
2488 2891 0.460284 GATCACCGACCGTTCTGCAT 60.460 55.000 0.00 0.00 0.00 3.96
2489 2892 1.080093 GATCACCGACCGTTCTGCA 60.080 57.895 0.00 0.00 0.00 4.41
2684 3087 0.443088 AGTAGACGTCGCTCTTGTCG 59.557 55.000 10.46 0.00 37.69 4.35
3027 3442 2.363147 GGAGCTCCTGTCTCCGGT 60.363 66.667 26.25 0.00 40.51 5.28
3070 3485 0.170561 ATACATACGATCGAGCCGGC 59.829 55.000 24.34 21.89 0.00 6.13
3082 3497 4.439057 ACACGTGTGGATTGGATACATAC 58.561 43.478 22.71 0.00 40.34 2.39
3083 3498 4.746535 ACACGTGTGGATTGGATACATA 57.253 40.909 22.71 0.00 40.34 2.29
3084 3499 3.627395 ACACGTGTGGATTGGATACAT 57.373 42.857 22.71 0.00 40.34 2.29
3085 3500 4.746535 ATACACGTGTGGATTGGATACA 57.253 40.909 30.83 6.65 39.25 2.29
3086 3501 4.684703 GCTATACACGTGTGGATTGGATAC 59.315 45.833 30.83 9.51 35.38 2.24
3087 3502 4.262292 GGCTATACACGTGTGGATTGGATA 60.262 45.833 30.83 16.60 35.38 2.59
3088 3503 3.494398 GGCTATACACGTGTGGATTGGAT 60.494 47.826 30.83 16.35 35.38 3.41
3089 3504 2.159014 GGCTATACACGTGTGGATTGGA 60.159 50.000 30.83 9.63 35.38 3.53
3090 3505 2.210116 GGCTATACACGTGTGGATTGG 58.790 52.381 30.83 14.94 35.38 3.16
3091 3506 2.899976 TGGCTATACACGTGTGGATTG 58.100 47.619 30.83 18.11 35.38 2.67
3092 3507 3.620427 TTGGCTATACACGTGTGGATT 57.380 42.857 30.83 14.74 35.38 3.01
3093 3508 3.620427 TTTGGCTATACACGTGTGGAT 57.380 42.857 30.83 19.26 37.92 3.41
3114 3529 2.837532 ATTTTCCAAAGCACGGCAAT 57.162 40.000 0.00 0.00 0.00 3.56
3136 3551 6.980397 TCTTTCAAGAAAACTGCAAATCTTCC 59.020 34.615 0.00 0.00 30.01 3.46
3145 3584 9.600646 GTAGTAATCTTCTTTCAAGAAAACTGC 57.399 33.333 3.64 5.29 43.84 4.40
3151 3590 9.832445 ACAAGTGTAGTAATCTTCTTTCAAGAA 57.168 29.630 2.07 2.07 42.41 2.52
3153 3592 9.261180 TGACAAGTGTAGTAATCTTCTTTCAAG 57.739 33.333 0.00 0.00 0.00 3.02
3156 3595 8.713271 CCTTGACAAGTGTAGTAATCTTCTTTC 58.287 37.037 14.03 0.00 0.00 2.62
3160 3608 6.698380 TCCCTTGACAAGTGTAGTAATCTTC 58.302 40.000 14.03 0.00 0.00 2.87
3164 3612 6.597562 TGTTTCCCTTGACAAGTGTAGTAAT 58.402 36.000 14.03 0.00 0.00 1.89
3182 3630 9.793245 CGAGATACGTATTCATAATTTGTTTCC 57.207 33.333 9.92 0.00 37.22 3.13
3202 3650 9.594478 TCAAAATTTACAAGTATCTGCGAGATA 57.406 29.630 0.00 2.81 36.20 1.98
3203 3651 8.492673 TCAAAATTTACAAGTATCTGCGAGAT 57.507 30.769 0.00 4.45 38.70 2.75
3204 3652 7.899178 TCAAAATTTACAAGTATCTGCGAGA 57.101 32.000 0.00 0.00 0.00 4.04
3205 3653 8.015087 TGTTCAAAATTTACAAGTATCTGCGAG 58.985 33.333 0.00 0.00 0.00 5.03
3207 3655 8.500837 TTGTTCAAAATTTACAAGTATCTGCG 57.499 30.769 1.68 0.00 0.00 5.18
3218 3667 9.877137 CCTTTGCCTTATTTGTTCAAAATTTAC 57.123 29.630 2.11 0.00 0.00 2.01
3237 3686 2.514458 TTTCCTCCAGATCCTTTGCC 57.486 50.000 0.00 0.00 0.00 4.52
3243 3692 6.553100 TCTTTCTAGAGATTTCCTCCAGATCC 59.447 42.308 0.00 0.00 38.97 3.36
3245 3694 6.900186 TGTCTTTCTAGAGATTTCCTCCAGAT 59.100 38.462 0.00 0.00 38.97 2.90
3246 3695 6.256819 TGTCTTTCTAGAGATTTCCTCCAGA 58.743 40.000 0.00 0.00 42.97 3.86
3247 3696 6.537453 TGTCTTTCTAGAGATTTCCTCCAG 57.463 41.667 0.00 0.00 42.97 3.86
3248 3697 6.935240 TTGTCTTTCTAGAGATTTCCTCCA 57.065 37.500 0.00 0.00 42.97 3.86
3262 3711 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
3263 3712 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
3264 3713 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
3265 3714 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
3266 3715 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
3267 3716 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
3268 3717 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
3269 3718 7.985752 ACTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
3270 3719 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
3271 3720 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
3272 3721 7.781693 TGTACTACTCCCTCCGTTTCTAAATAT 59.218 37.037 0.00 0.00 0.00 1.28
3273 3722 7.118723 TGTACTACTCCCTCCGTTTCTAAATA 58.881 38.462 0.00 0.00 0.00 1.40
3274 3723 5.954150 TGTACTACTCCCTCCGTTTCTAAAT 59.046 40.000 0.00 0.00 0.00 1.40
3275 3724 5.324409 TGTACTACTCCCTCCGTTTCTAAA 58.676 41.667 0.00 0.00 0.00 1.85
3276 3725 4.922206 TGTACTACTCCCTCCGTTTCTAA 58.078 43.478 0.00 0.00 0.00 2.10
3277 3726 4.574674 TGTACTACTCCCTCCGTTTCTA 57.425 45.455 0.00 0.00 0.00 2.10
3278 3727 3.446442 TGTACTACTCCCTCCGTTTCT 57.554 47.619 0.00 0.00 0.00 2.52
3279 3728 4.732672 ATTGTACTACTCCCTCCGTTTC 57.267 45.455 0.00 0.00 0.00 2.78
3280 3729 5.012354 TCAAATTGTACTACTCCCTCCGTTT 59.988 40.000 0.00 0.00 0.00 3.60
3281 3730 4.529377 TCAAATTGTACTACTCCCTCCGTT 59.471 41.667 0.00 0.00 0.00 4.44
3282 3731 4.091549 TCAAATTGTACTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
3283 3732 4.401519 TCTCAAATTGTACTACTCCCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
3284 3733 5.934402 TCTCAAATTGTACTACTCCCTCC 57.066 43.478 0.00 0.00 0.00 4.30
3285 3734 9.886132 TTTATTCTCAAATTGTACTACTCCCTC 57.114 33.333 0.00 0.00 0.00 4.30
3309 3758 9.512588 TGGCATGGAAAAACATAATGTAATTTT 57.487 25.926 0.00 0.00 37.87 1.82
3310 3759 8.945057 GTGGCATGGAAAAACATAATGTAATTT 58.055 29.630 0.00 0.00 37.87 1.82
3311 3760 8.099537 TGTGGCATGGAAAAACATAATGTAATT 58.900 29.630 0.00 0.00 41.28 1.40
3312 3761 7.619050 TGTGGCATGGAAAAACATAATGTAAT 58.381 30.769 0.00 0.00 0.00 1.89
3313 3762 6.997655 TGTGGCATGGAAAAACATAATGTAA 58.002 32.000 0.00 0.00 0.00 2.41
3314 3763 6.596309 TGTGGCATGGAAAAACATAATGTA 57.404 33.333 0.00 0.00 0.00 2.29
3315 3764 5.480642 TGTGGCATGGAAAAACATAATGT 57.519 34.783 0.00 0.00 0.00 2.71
3316 3765 8.665643 AATATGTGGCATGGAAAAACATAATG 57.334 30.769 0.00 0.00 37.30 1.90
3317 3766 8.484575 TGAATATGTGGCATGGAAAAACATAAT 58.515 29.630 0.00 0.00 37.30 1.28
3318 3767 7.845037 TGAATATGTGGCATGGAAAAACATAA 58.155 30.769 0.00 0.00 37.30 1.90
3319 3768 7.123997 ACTGAATATGTGGCATGGAAAAACATA 59.876 33.333 0.00 0.00 37.92 2.29
3320 3769 6.070653 ACTGAATATGTGGCATGGAAAAACAT 60.071 34.615 0.00 0.00 35.70 2.71
3321 3770 5.245751 ACTGAATATGTGGCATGGAAAAACA 59.754 36.000 0.00 0.00 0.00 2.83
3322 3771 5.723295 ACTGAATATGTGGCATGGAAAAAC 58.277 37.500 0.00 0.00 0.00 2.43
3323 3772 5.999205 ACTGAATATGTGGCATGGAAAAA 57.001 34.783 0.00 0.00 0.00 1.94
3324 3773 5.999205 AACTGAATATGTGGCATGGAAAA 57.001 34.783 0.00 0.00 0.00 2.29
3325 3774 5.999205 AAACTGAATATGTGGCATGGAAA 57.001 34.783 0.00 0.00 0.00 3.13
3326 3775 5.105392 GGAAAACTGAATATGTGGCATGGAA 60.105 40.000 0.00 0.00 0.00 3.53
3327 3776 4.402155 GGAAAACTGAATATGTGGCATGGA 59.598 41.667 0.00 0.00 0.00 3.41
3328 3777 4.160065 TGGAAAACTGAATATGTGGCATGG 59.840 41.667 0.00 0.00 0.00 3.66
3329 3778 5.327616 TGGAAAACTGAATATGTGGCATG 57.672 39.130 0.00 0.00 0.00 4.06
3330 3779 5.422970 ACATGGAAAACTGAATATGTGGCAT 59.577 36.000 0.00 0.00 0.00 4.40
3331 3780 4.771577 ACATGGAAAACTGAATATGTGGCA 59.228 37.500 0.00 0.00 0.00 4.92
3332 3781 5.329035 ACATGGAAAACTGAATATGTGGC 57.671 39.130 0.00 0.00 0.00 5.01
3333 3782 7.825681 TGTAACATGGAAAACTGAATATGTGG 58.174 34.615 0.00 0.00 0.00 4.17
3334 3783 9.859427 AATGTAACATGGAAAACTGAATATGTG 57.141 29.630 0.00 0.00 0.00 3.21
3340 3789 9.906660 GAACATAATGTAACATGGAAAACTGAA 57.093 29.630 0.00 0.00 0.00 3.02
3341 3790 9.295825 AGAACATAATGTAACATGGAAAACTGA 57.704 29.630 0.00 0.00 0.00 3.41
3342 3791 9.912634 AAGAACATAATGTAACATGGAAAACTG 57.087 29.630 0.00 0.00 0.00 3.16
3344 3793 9.906660 TGAAGAACATAATGTAACATGGAAAAC 57.093 29.630 0.00 0.00 0.00 2.43
3346 3795 9.295825 ACTGAAGAACATAATGTAACATGGAAA 57.704 29.630 0.00 0.00 0.00 3.13
3347 3796 8.862325 ACTGAAGAACATAATGTAACATGGAA 57.138 30.769 0.00 0.00 0.00 3.53
3348 3797 8.862325 AACTGAAGAACATAATGTAACATGGA 57.138 30.769 0.00 0.00 0.00 3.41
3349 3798 9.912634 AAAACTGAAGAACATAATGTAACATGG 57.087 29.630 0.00 0.00 0.00 3.66
3355 3804 9.624697 GCAATGAAAACTGAAGAACATAATGTA 57.375 29.630 0.00 0.00 0.00 2.29
3356 3805 8.143193 TGCAATGAAAACTGAAGAACATAATGT 58.857 29.630 0.00 0.00 0.00 2.71
3357 3806 8.523523 TGCAATGAAAACTGAAGAACATAATG 57.476 30.769 0.00 0.00 0.00 1.90
3358 3807 8.362639 ACTGCAATGAAAACTGAAGAACATAAT 58.637 29.630 0.00 0.00 0.00 1.28
3359 3808 7.715657 ACTGCAATGAAAACTGAAGAACATAA 58.284 30.769 0.00 0.00 0.00 1.90
3360 3809 7.275888 ACTGCAATGAAAACTGAAGAACATA 57.724 32.000 0.00 0.00 0.00 2.29
3361 3810 6.152932 ACTGCAATGAAAACTGAAGAACAT 57.847 33.333 0.00 0.00 0.00 2.71
3362 3811 5.581126 ACTGCAATGAAAACTGAAGAACA 57.419 34.783 0.00 0.00 0.00 3.18
3363 3812 6.268566 AGAACTGCAATGAAAACTGAAGAAC 58.731 36.000 0.00 0.00 0.00 3.01
3364 3813 6.455360 AGAACTGCAATGAAAACTGAAGAA 57.545 33.333 0.00 0.00 0.00 2.52
3365 3814 6.455360 AAGAACTGCAATGAAAACTGAAGA 57.545 33.333 0.00 0.00 0.00 2.87
3366 3815 7.529880 AAAAGAACTGCAATGAAAACTGAAG 57.470 32.000 0.00 0.00 0.00 3.02
3367 3816 8.994429 TTAAAAGAACTGCAATGAAAACTGAA 57.006 26.923 0.00 0.00 0.00 3.02
3442 3891 9.923786 GTCAAAATATGCATACATTTGTACGTA 57.076 29.630 28.47 16.64 37.74 3.57
3443 3892 7.913297 GGTCAAAATATGCATACATTTGTACGT 59.087 33.333 28.47 0.00 37.74 3.57
3444 3893 7.378461 GGGTCAAAATATGCATACATTTGTACG 59.622 37.037 28.47 15.16 37.74 3.67
3445 3894 8.194104 TGGGTCAAAATATGCATACATTTGTAC 58.806 33.333 28.47 24.93 37.74 2.90
3477 3926 6.394345 AACCAATTCTCTCCCAGTCTTTAT 57.606 37.500 0.00 0.00 0.00 1.40
3486 3935 3.154827 TGTTGGAACCAATTCTCTCCC 57.845 47.619 9.53 0.00 38.28 4.30
3487 3936 4.158579 GGAATGTTGGAACCAATTCTCTCC 59.841 45.833 9.53 8.03 38.28 3.71
3492 3941 2.094234 CGGGGAATGTTGGAACCAATTC 60.094 50.000 9.53 9.77 38.28 2.17
3545 3994 2.099921 GGCGAATTCTCAGTCTAGCAGA 59.900 50.000 3.52 0.00 0.00 4.26
3587 4036 5.277825 CAGTCTCGATGTTTAGACCAGATC 58.722 45.833 0.00 0.00 42.56 2.75
3681 4167 3.947612 AAGCAGATGTCAGGGAATGAT 57.052 42.857 0.00 0.00 40.92 2.45
3737 4223 2.672996 CAAGGCCACAAGGGTCCG 60.673 66.667 5.01 0.00 44.85 4.79
3759 4245 1.197721 GTGATGTCCGGAGCTTGTTTG 59.802 52.381 3.06 0.00 0.00 2.93
3998 4503 0.107017 AAATCCTGTATGCCGCTGCT 60.107 50.000 0.70 0.00 38.71 4.24
3999 4504 0.308993 GAAATCCTGTATGCCGCTGC 59.691 55.000 0.00 0.00 38.26 5.25
4000 4505 0.947244 GGAAATCCTGTATGCCGCTG 59.053 55.000 0.00 0.00 0.00 5.18
4019 4524 0.656259 CAGTCTGCGCCATGAGATTG 59.344 55.000 4.18 4.10 0.00 2.67
4020 4525 1.094073 GCAGTCTGCGCCATGAGATT 61.094 55.000 9.53 0.00 31.71 2.40
4044 4549 2.055299 CCGTAACACACTGGGGAGT 58.945 57.895 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.