Multiple sequence alignment - TraesCS5D01G501700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G501700 chr5D 100.000 6944 0 0 2163 9106 529535147 529542090 0.000000e+00 12824.0
1 TraesCS5D01G501700 chr5D 100.000 1026 0 0 1 1026 529532985 529534010 0.000000e+00 1895.0
2 TraesCS5D01G501700 chr5D 100.000 771 0 0 1207 1977 529534191 529534961 0.000000e+00 1424.0
3 TraesCS5D01G501700 chr5D 100.000 44 0 0 8943 8986 265909356 265909313 2.110000e-11 82.4
4 TraesCS5D01G501700 chr5D 91.525 59 0 4 8928 8986 184072165 184072218 9.800000e-10 76.8
5 TraesCS5D01G501700 chr5B 95.849 6746 202 39 2163 8863 668468103 668474815 0.000000e+00 10835.0
6 TraesCS5D01G501700 chr5B 93.904 771 47 0 1207 1977 668467288 668468058 0.000000e+00 1164.0
7 TraesCS5D01G501700 chr5B 94.256 383 18 4 646 1026 668466913 668467293 4.740000e-162 582.0
8 TraesCS5D01G501700 chr5B 81.649 376 57 6 105 474 668463888 668464257 1.490000e-77 302.0
9 TraesCS5D01G501700 chr5B 89.344 122 11 1 1656 1777 672963956 672964075 1.580000e-32 152.0
10 TraesCS5D01G501700 chr5A 94.349 5397 203 33 3221 8585 657542989 657548315 0.000000e+00 8183.0
11 TraesCS5D01G501700 chr5A 96.262 1070 31 7 2163 3225 657541751 657542818 0.000000e+00 1746.0
12 TraesCS5D01G501700 chr5A 88.342 772 60 10 1207 1977 657540963 657541705 0.000000e+00 900.0
13 TraesCS5D01G501700 chr5A 91.169 385 27 5 647 1026 657540586 657540968 4.870000e-142 516.0
14 TraesCS5D01G501700 chr5A 88.517 418 38 6 1 409 657540112 657540528 1.770000e-136 497.0
15 TraesCS5D01G501700 chr5A 88.839 224 17 4 8593 8814 657548360 657548577 1.510000e-67 268.0
16 TraesCS5D01G501700 chr5A 97.872 47 1 0 8940 8986 24199786 24199740 2.110000e-11 82.4
17 TraesCS5D01G501700 chr2D 86.667 1050 91 20 4977 6011 631932663 631933678 0.000000e+00 1118.0
18 TraesCS5D01G501700 chr2D 84.173 556 46 16 2694 3216 631883710 631884256 1.360000e-137 501.0
19 TraesCS5D01G501700 chr2D 83.025 595 51 13 4430 5018 631932113 631932663 2.280000e-135 494.0
20 TraesCS5D01G501700 chr2D 87.500 312 33 4 3744 4050 631886853 631887163 1.120000e-93 355.0
21 TraesCS5D01G501700 chr2D 80.537 298 34 7 1700 1977 631541812 631541519 3.330000e-49 207.0
22 TraesCS5D01G501700 chr2D 93.578 109 7 0 3101 3209 631930722 631930830 7.320000e-36 163.0
23 TraesCS5D01G501700 chr2D 90.625 96 9 0 1784 1879 631930611 631930706 2.670000e-25 128.0
24 TraesCS5D01G501700 chr2A 84.991 1066 94 32 4977 6011 759834937 759833907 0.000000e+00 1022.0
25 TraesCS5D01G501700 chr2A 85.828 501 58 7 2237 2731 759844431 759843938 3.770000e-143 520.0
26 TraesCS5D01G501700 chr2A 88.732 426 41 4 2209 2627 759841276 759840851 1.750000e-141 514.0
27 TraesCS5D01G501700 chr2A 89.344 244 22 4 2977 3217 759843936 759843694 4.130000e-78 303.0
28 TraesCS5D01G501700 chr2A 92.857 112 8 0 3101 3212 759836304 759836193 7.320000e-36 163.0
29 TraesCS5D01G501700 chr2A 90.625 96 9 0 1784 1879 759836415 759836320 2.670000e-25 128.0
30 TraesCS5D01G501700 chr2A 87.037 108 13 1 2961 3068 759864361 759864255 4.470000e-23 121.0
31 TraesCS5D01G501700 chr2A 90.110 91 2 4 2170 2254 759849097 759849008 2.690000e-20 111.0
32 TraesCS5D01G501700 chr2A 92.727 55 1 3 8932 8986 760127084 760127135 9.800000e-10 76.8
33 TraesCS5D01G501700 chrUn 83.987 918 86 21 3744 4627 31785116 31786006 0.000000e+00 824.0
34 TraesCS5D01G501700 chrUn 87.342 395 45 4 2237 2627 31753658 31754051 1.800000e-121 448.0
35 TraesCS5D01G501700 chrUn 88.439 346 34 5 2237 2577 31863204 31863548 6.580000e-111 412.0
36 TraesCS5D01G501700 chrUn 84.530 362 44 8 4896 5255 237260828 237261179 1.880000e-91 348.0
37 TraesCS5D01G501700 chrUn 84.530 362 44 8 4896 5255 411381077 411380726 1.880000e-91 348.0
38 TraesCS5D01G501700 chrUn 84.530 362 44 8 4896 5255 451171849 451172200 1.880000e-91 348.0
39 TraesCS5D01G501700 chrUn 84.530 362 44 8 4896 5255 468173973 468174324 1.880000e-91 348.0
40 TraesCS5D01G501700 chrUn 84.254 362 45 7 4896 5255 182418007 182418358 8.760000e-90 342.0
41 TraesCS5D01G501700 chrUn 85.771 253 30 4 2190 2437 31790048 31790299 7.010000e-66 263.0
42 TraesCS5D01G501700 chrUn 89.796 98 6 1 4662 4755 31786003 31786100 1.240000e-23 122.0
43 TraesCS5D01G501700 chrUn 90.909 44 4 0 8889 8932 137771817 137771860 9.870000e-05 60.2
44 TraesCS5D01G501700 chr4B 94.493 454 23 1 4338 4789 503739462 503739915 0.000000e+00 699.0
45 TraesCS5D01G501700 chr4B 91.525 59 1 2 8928 8986 326084367 326084421 2.730000e-10 78.7
46 TraesCS5D01G501700 chr2B 84.142 763 68 17 5262 6011 775164094 775164816 0.000000e+00 689.0
47 TraesCS5D01G501700 chr2B 83.929 728 73 17 3744 4452 775055147 775055849 0.000000e+00 656.0
48 TraesCS5D01G501700 chr2B 87.078 503 54 10 2237 2731 775139899 775140398 7.990000e-155 558.0
49 TraesCS5D01G501700 chr2B 82.857 595 59 15 4430 5018 775163134 775163691 2.280000e-135 494.0
50 TraesCS5D01G501700 chr2B 87.342 395 45 4 2237 2627 775158350 775158743 1.800000e-121 448.0
51 TraesCS5D01G501700 chr2B 88.103 311 34 2 2908 3215 775053635 775053945 5.200000e-97 366.0
52 TraesCS5D01G501700 chr2B 86.275 255 32 3 2966 3217 775140387 775140641 3.240000e-69 274.0
53 TraesCS5D01G501700 chr2B 95.413 109 5 0 3101 3209 775161760 775161868 3.380000e-39 174.0
54 TraesCS5D01G501700 chr7D 84.530 362 44 8 4896 5255 382032771 382033122 1.880000e-91 348.0
55 TraesCS5D01G501700 chr7D 84.530 362 44 8 4896 5255 579012594 579012243 1.880000e-91 348.0
56 TraesCS5D01G501700 chr7D 87.137 241 19 3 1259 1491 39863617 39863853 7.010000e-66 263.0
57 TraesCS5D01G501700 chr7D 87.137 241 19 3 1259 1491 597514435 597514199 7.010000e-66 263.0
58 TraesCS5D01G501700 chr7D 86.722 241 20 3 1259 1491 27353216 27352980 3.260000e-64 257.0
59 TraesCS5D01G501700 chr1B 83.425 362 48 8 4896 5255 286163641 286163290 8.820000e-85 326.0
60 TraesCS5D01G501700 chr1B 82.353 85 15 0 542 626 646912214 646912298 3.530000e-09 75.0
61 TraesCS5D01G501700 chr7A 86.532 297 27 5 1259 1546 162328577 162328869 1.910000e-81 315.0
62 TraesCS5D01G501700 chr7A 85.185 297 31 5 1259 1546 668694893 668695185 8.940000e-75 292.0
63 TraesCS5D01G501700 chr7A 92.424 66 5 0 5190 5255 4914288 4914223 2.710000e-15 95.3
64 TraesCS5D01G501700 chr7A 84.000 75 11 1 8912 8986 128926398 128926325 4.560000e-08 71.3
65 TraesCS5D01G501700 chr1A 85.522 297 30 6 1259 1546 419297960 419298252 1.920000e-76 298.0
66 TraesCS5D01G501700 chr1D 87.137 241 19 3 1259 1491 422494989 422495225 7.010000e-66 263.0
67 TraesCS5D01G501700 chr1D 91.367 139 12 0 488 626 405050034 405049896 3.360000e-44 191.0
68 TraesCS5D01G501700 chr1D 87.059 85 11 0 542 626 468248116 468248200 7.530000e-16 97.1
69 TraesCS5D01G501700 chr3D 97.959 49 0 1 8939 8986 551215714 551215762 5.860000e-12 84.2
70 TraesCS5D01G501700 chr4A 97.917 48 0 1 8939 8986 416636827 416636781 2.110000e-11 82.4
71 TraesCS5D01G501700 chr6B 91.379 58 4 1 8929 8986 437469880 437469936 2.730000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G501700 chr5D 529532985 529542090 9105 False 5381.000000 12824 100.000000 1 9106 3 chr5D.!!$F2 9105
1 TraesCS5D01G501700 chr5B 668463888 668474815 10927 False 3220.750000 10835 91.414500 105 8863 4 chr5B.!!$F2 8758
2 TraesCS5D01G501700 chr5A 657540112 657548577 8465 False 2018.333333 8183 91.246333 1 8814 6 chr5A.!!$F1 8813
3 TraesCS5D01G501700 chr2D 631930611 631933678 3067 False 475.750000 1118 88.473750 1784 6011 4 chr2D.!!$F2 4227
4 TraesCS5D01G501700 chr2D 631883710 631887163 3453 False 428.000000 501 85.836500 2694 4050 2 chr2D.!!$F1 1356
5 TraesCS5D01G501700 chr2A 759840851 759844431 3580 True 445.666667 520 87.968000 2209 3217 3 chr2A.!!$R4 1008
6 TraesCS5D01G501700 chr2A 759833907 759836415 2508 True 437.666667 1022 89.491000 1784 6011 3 chr2A.!!$R3 4227
7 TraesCS5D01G501700 chrUn 31785116 31790299 5183 False 403.000000 824 86.518000 2190 4755 3 chrUn.!!$F8 2565
8 TraesCS5D01G501700 chr2B 775053635 775055849 2214 False 511.000000 656 86.016000 2908 4452 2 chr2B.!!$F1 1544
9 TraesCS5D01G501700 chr2B 775158350 775164816 6466 False 451.250000 689 87.438500 2237 6011 4 chr2B.!!$F3 3774
10 TraesCS5D01G501700 chr2B 775139899 775140641 742 False 416.000000 558 86.676500 2237 3217 2 chr2B.!!$F2 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
620 637 0.037326 AATCGTCCACTGTGCATCGT 60.037 50.000 1.29 0.00 0.00 3.73 F
621 638 0.737367 ATCGTCCACTGTGCATCGTG 60.737 55.000 1.29 10.39 0.00 4.35 F
1529 4206 0.030235 GTTGACCCGAACCAGTTTGC 59.970 55.000 0.00 0.00 0.00 3.68 F
1787 4464 0.607489 AAGCAGGCTACTTGTGCAGG 60.607 55.000 0.00 0.00 39.80 4.85 F
1801 4478 2.239402 TGTGCAGGAGAATGCTATTCCA 59.761 45.455 0.00 0.00 46.63 3.53 F
3261 10604 2.357075 GCTGTAGCTTGTTTCCCCTAC 58.643 52.381 0.00 0.00 38.21 3.18 F
4267 12189 0.253044 TGTATCTGGCAGGCTTCACC 59.747 55.000 15.73 0.00 39.61 4.02 F
5125 13119 1.337823 CGACCCCAGTAAGTGAACCTG 60.338 57.143 0.00 0.00 0.00 4.00 F
5292 13413 1.421485 CGCGAGTAAGGCTGCTTTG 59.579 57.895 0.00 0.00 0.00 2.77 F
6612 14774 3.496130 GCCGATGTAATCCATGTCTCTTG 59.504 47.826 0.00 0.00 41.39 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 4182 1.133915 ACTGGTTCGGGTCAACAACAT 60.134 47.619 0.00 0.0 0.00 2.71 R
2477 5164 2.161808 CAGTGAAATTCAGGAGCAGCAG 59.838 50.000 0.00 0.0 0.00 4.24 R
3159 8424 2.249139 ACAGAGGGAACACACTACTCC 58.751 52.381 0.00 0.0 0.00 3.85 R
3632 10980 2.237392 GTTCTTCAGGACATAGCAGGGT 59.763 50.000 0.00 0.0 0.00 4.34 R
3736 11463 4.218312 AGGCCATCCTGGAATTAATGTTC 58.782 43.478 5.01 0.0 40.96 3.18 R
4364 12288 0.525761 CAATACTTTGTGGTGGGCGG 59.474 55.000 0.00 0.0 0.00 6.13 R
5712 13872 0.534203 CACCACGGTAACACAGGCTT 60.534 55.000 0.00 0.0 0.00 4.35 R
6424 14585 1.904537 ACATCAGCAGTGACCATCTCA 59.095 47.619 0.00 0.0 34.75 3.27 R
7070 15719 2.039084 AGTCCTTGCGTCTTTTCTCCAT 59.961 45.455 0.00 0.0 0.00 3.41 R
8168 16939 0.177141 AGTGTGTTACGGTGTGCAGT 59.823 50.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.523938 GACAAGCCATCCCCGTAGC 60.524 63.158 0.00 0.00 0.00 3.58
64 65 1.471119 CTCCAGCATGCAAGATTGGT 58.529 50.000 21.98 0.00 31.97 3.67
77 78 2.577970 AGATTGGTTGGGAGGAGGATT 58.422 47.619 0.00 0.00 0.00 3.01
87 88 2.969262 GGGAGGAGGATTAGGAGAAGTG 59.031 54.545 0.00 0.00 0.00 3.16
88 89 2.969262 GGAGGAGGATTAGGAGAAGTGG 59.031 54.545 0.00 0.00 0.00 4.00
98 99 5.576563 TTAGGAGAAGTGGTGGATCAAAA 57.423 39.130 0.00 0.00 0.00 2.44
110 111 8.443176 AGTGGTGGATCAAAATCACTATGATAT 58.557 33.333 6.45 0.00 35.76 1.63
125 126 1.831106 TGATATGACACCTTGGCGTCT 59.169 47.619 8.94 0.00 33.18 4.18
153 155 4.428615 TGTACGAAGTTGTGATCGATGA 57.571 40.909 0.54 0.00 37.78 2.92
171 173 1.304381 ACCGCAACCCATGAAGCAT 60.304 52.632 0.00 0.00 0.00 3.79
211 213 2.493035 ACATGTGTCGTGCAGAAATCA 58.507 42.857 0.00 0.00 0.00 2.57
212 214 2.481568 ACATGTGTCGTGCAGAAATCAG 59.518 45.455 0.00 0.00 0.00 2.90
235 237 8.576442 TCAGATAGAAATAATCGTATGTGCAGA 58.424 33.333 0.00 0.00 0.00 4.26
244 246 4.041740 TCGTATGTGCAGAAGTGGATAC 57.958 45.455 0.00 0.00 0.00 2.24
279 281 1.229209 AGAAAGTCCCTGGCGGAGA 60.229 57.895 0.00 0.00 43.19 3.71
282 284 1.128188 AAAGTCCCTGGCGGAGAAGT 61.128 55.000 0.00 0.00 43.19 3.01
290 292 1.375326 GGCGGAGAAGTGGAAACCT 59.625 57.895 0.00 0.00 0.00 3.50
409 419 3.307269 CGGGAGATACATGGCTTGATGAT 60.307 47.826 7.45 0.00 0.00 2.45
410 420 4.660168 GGGAGATACATGGCTTGATGATT 58.340 43.478 7.45 0.00 0.00 2.57
411 421 5.075493 GGGAGATACATGGCTTGATGATTT 58.925 41.667 7.45 0.00 0.00 2.17
412 422 5.537674 GGGAGATACATGGCTTGATGATTTT 59.462 40.000 7.45 0.00 0.00 1.82
413 423 6.041296 GGGAGATACATGGCTTGATGATTTTT 59.959 38.462 7.45 0.00 0.00 1.94
449 466 9.702494 GAGACAAAAGATTTCTTTCATCCATTT 57.298 29.630 6.05 0.00 44.69 2.32
482 499 8.403606 AGTAGAGAATTGTTCGGTTATTAACG 57.596 34.615 0.64 0.00 34.02 3.18
483 500 8.246180 AGTAGAGAATTGTTCGGTTATTAACGA 58.754 33.333 0.00 0.00 37.33 3.85
484 501 7.894376 AGAGAATTGTTCGGTTATTAACGAA 57.106 32.000 0.00 0.00 45.61 3.85
493 510 5.903703 TCGGTTATTAACGAAACGAAACTG 58.096 37.500 9.09 0.00 42.69 3.16
494 511 4.546941 CGGTTATTAACGAAACGAAACTGC 59.453 41.667 3.81 0.00 39.36 4.40
495 512 5.613142 CGGTTATTAACGAAACGAAACTGCT 60.613 40.000 3.81 0.00 39.36 4.24
496 513 5.787062 GGTTATTAACGAAACGAAACTGCTC 59.213 40.000 0.00 0.00 0.00 4.26
497 514 6.347160 GGTTATTAACGAAACGAAACTGCTCT 60.347 38.462 0.00 0.00 0.00 4.09
498 515 4.446857 TTAACGAAACGAAACTGCTCTG 57.553 40.909 0.00 0.00 0.00 3.35
499 516 0.582005 ACGAAACGAAACTGCTCTGC 59.418 50.000 0.00 0.00 0.00 4.26
500 517 0.449507 CGAAACGAAACTGCTCTGCG 60.450 55.000 0.00 0.00 0.00 5.18
501 518 0.110644 GAAACGAAACTGCTCTGCGG 60.111 55.000 0.00 0.00 41.29 5.69
502 519 0.531974 AAACGAAACTGCTCTGCGGA 60.532 50.000 5.31 0.00 38.46 5.54
503 520 1.222115 AACGAAACTGCTCTGCGGAC 61.222 55.000 5.31 0.00 38.46 4.79
504 521 2.720758 CGAAACTGCTCTGCGGACG 61.721 63.158 5.31 4.63 38.46 4.79
505 522 2.357517 AAACTGCTCTGCGGACGG 60.358 61.111 5.31 0.00 38.46 4.79
506 523 3.165160 AAACTGCTCTGCGGACGGT 62.165 57.895 5.31 0.00 38.46 4.83
507 524 1.812686 AAACTGCTCTGCGGACGGTA 61.813 55.000 5.31 0.00 38.46 4.02
508 525 1.812686 AACTGCTCTGCGGACGGTAA 61.813 55.000 5.31 0.00 38.46 2.85
509 526 1.080093 CTGCTCTGCGGACGGTAAA 60.080 57.895 0.00 0.00 37.02 2.01
510 527 1.352156 CTGCTCTGCGGACGGTAAAC 61.352 60.000 0.00 0.00 37.02 2.01
511 528 1.080025 GCTCTGCGGACGGTAAACT 60.080 57.895 0.00 0.00 0.00 2.66
512 529 1.352156 GCTCTGCGGACGGTAAACTG 61.352 60.000 0.00 0.00 0.00 3.16
513 530 0.736325 CTCTGCGGACGGTAAACTGG 60.736 60.000 0.00 0.00 0.00 4.00
514 531 2.357760 TGCGGACGGTAAACTGGC 60.358 61.111 0.00 0.00 0.00 4.85
515 532 2.047560 GCGGACGGTAAACTGGCT 60.048 61.111 0.00 0.00 0.00 4.75
516 533 2.388232 GCGGACGGTAAACTGGCTG 61.388 63.158 0.00 0.00 39.70 4.85
517 534 2.388232 CGGACGGTAAACTGGCTGC 61.388 63.158 0.00 0.00 28.30 5.25
518 535 1.302192 GGACGGTAAACTGGCTGCA 60.302 57.895 0.50 0.00 0.00 4.41
519 536 1.574702 GGACGGTAAACTGGCTGCAC 61.575 60.000 0.50 0.00 0.00 4.57
520 537 1.897398 GACGGTAAACTGGCTGCACG 61.897 60.000 0.50 0.00 0.00 5.34
521 538 1.666553 CGGTAAACTGGCTGCACGA 60.667 57.895 0.50 0.00 0.00 4.35
522 539 1.866925 GGTAAACTGGCTGCACGAC 59.133 57.895 0.50 0.00 0.00 4.34
523 540 1.491563 GTAAACTGGCTGCACGACG 59.508 57.895 0.50 0.00 0.00 5.12
524 541 0.942410 GTAAACTGGCTGCACGACGA 60.942 55.000 0.00 0.00 0.00 4.20
525 542 0.942410 TAAACTGGCTGCACGACGAC 60.942 55.000 0.00 0.00 0.00 4.34
526 543 2.644555 AAACTGGCTGCACGACGACT 62.645 55.000 0.00 0.00 0.00 4.18
527 544 3.108289 CTGGCTGCACGACGACTG 61.108 66.667 0.00 0.00 0.00 3.51
530 547 4.064491 GCTGCACGACGACTGCAC 62.064 66.667 8.87 3.86 39.76 4.57
531 548 3.756677 CTGCACGACGACTGCACG 61.757 66.667 8.87 3.14 39.76 5.34
532 549 4.258932 TGCACGACGACTGCACGA 62.259 61.111 8.87 0.00 39.76 4.35
533 550 2.805353 GCACGACGACTGCACGAT 60.805 61.111 0.00 0.00 34.56 3.73
534 551 3.059472 GCACGACGACTGCACGATG 62.059 63.158 0.00 0.82 34.56 3.84
535 552 2.805353 ACGACGACTGCACGATGC 60.805 61.111 0.00 0.00 45.29 3.91
536 553 2.504899 CGACGACTGCACGATGCT 60.505 61.111 3.48 0.00 45.31 3.79
537 554 1.226295 CGACGACTGCACGATGCTA 60.226 57.895 3.48 0.00 45.31 3.49
538 555 0.796870 CGACGACTGCACGATGCTAA 60.797 55.000 3.48 0.00 45.31 3.09
539 556 1.560923 GACGACTGCACGATGCTAAT 58.439 50.000 3.48 0.00 45.31 1.73
540 557 1.518929 GACGACTGCACGATGCTAATC 59.481 52.381 3.48 5.54 45.31 1.75
541 558 0.855349 CGACTGCACGATGCTAATCC 59.145 55.000 10.54 0.00 45.31 3.01
542 559 1.802508 CGACTGCACGATGCTAATCCA 60.803 52.381 10.54 0.00 45.31 3.41
543 560 1.863454 GACTGCACGATGCTAATCCAG 59.137 52.381 10.54 0.00 45.31 3.86
551 568 4.126524 GCTAATCCAGCCGTCCAC 57.873 61.111 0.00 0.00 45.23 4.02
552 569 1.220749 GCTAATCCAGCCGTCCACA 59.779 57.895 0.00 0.00 45.23 4.17
553 570 1.090052 GCTAATCCAGCCGTCCACAC 61.090 60.000 0.00 0.00 45.23 3.82
554 571 0.462047 CTAATCCAGCCGTCCACACC 60.462 60.000 0.00 0.00 0.00 4.16
555 572 1.195442 TAATCCAGCCGTCCACACCA 61.195 55.000 0.00 0.00 0.00 4.17
556 573 2.748058 AATCCAGCCGTCCACACCAC 62.748 60.000 0.00 0.00 0.00 4.16
557 574 3.941188 CCAGCCGTCCACACCACT 61.941 66.667 0.00 0.00 0.00 4.00
558 575 2.111043 CAGCCGTCCACACCACTT 59.889 61.111 0.00 0.00 0.00 3.16
559 576 1.525995 CAGCCGTCCACACCACTTT 60.526 57.895 0.00 0.00 0.00 2.66
560 577 1.227853 AGCCGTCCACACCACTTTC 60.228 57.895 0.00 0.00 0.00 2.62
561 578 1.525077 GCCGTCCACACCACTTTCA 60.525 57.895 0.00 0.00 0.00 2.69
562 579 0.889186 GCCGTCCACACCACTTTCAT 60.889 55.000 0.00 0.00 0.00 2.57
563 580 0.874390 CCGTCCACACCACTTTCATG 59.126 55.000 0.00 0.00 0.00 3.07
564 581 1.542328 CCGTCCACACCACTTTCATGA 60.542 52.381 0.00 0.00 0.00 3.07
565 582 2.426522 CGTCCACACCACTTTCATGAT 58.573 47.619 0.00 0.00 0.00 2.45
566 583 2.813754 CGTCCACACCACTTTCATGATT 59.186 45.455 0.00 0.00 0.00 2.57
567 584 4.000325 CGTCCACACCACTTTCATGATTA 59.000 43.478 0.00 0.00 0.00 1.75
568 585 4.093408 CGTCCACACCACTTTCATGATTAG 59.907 45.833 0.00 0.00 0.00 1.73
569 586 4.009675 TCCACACCACTTTCATGATTAGC 58.990 43.478 0.00 0.00 0.00 3.09
570 587 3.758023 CCACACCACTTTCATGATTAGCA 59.242 43.478 0.00 0.00 0.00 3.49
571 588 4.400251 CCACACCACTTTCATGATTAGCAT 59.600 41.667 0.00 0.00 37.85 3.79
580 597 2.627515 ATGATTAGCATGGACGCACT 57.372 45.000 0.00 0.00 35.42 4.40
581 598 1.655484 TGATTAGCATGGACGCACTG 58.345 50.000 0.00 0.00 0.00 3.66
582 599 1.206849 TGATTAGCATGGACGCACTGA 59.793 47.619 0.00 0.00 0.00 3.41
583 600 2.158914 TGATTAGCATGGACGCACTGAT 60.159 45.455 0.00 0.00 0.00 2.90
584 601 3.069443 TGATTAGCATGGACGCACTGATA 59.931 43.478 0.00 0.00 0.00 2.15
585 602 3.751479 TTAGCATGGACGCACTGATAT 57.249 42.857 0.00 0.00 0.00 1.63
586 603 1.875009 AGCATGGACGCACTGATATG 58.125 50.000 0.00 0.00 0.00 1.78
587 604 1.139654 AGCATGGACGCACTGATATGT 59.860 47.619 0.00 0.00 0.00 2.29
588 605 1.942657 GCATGGACGCACTGATATGTT 59.057 47.619 0.00 0.00 0.00 2.71
589 606 2.286595 GCATGGACGCACTGATATGTTG 60.287 50.000 0.00 0.00 0.00 3.33
590 607 2.760634 TGGACGCACTGATATGTTGT 57.239 45.000 0.00 0.00 0.00 3.32
591 608 2.345876 TGGACGCACTGATATGTTGTG 58.654 47.619 0.00 0.00 35.08 3.33
592 609 2.289382 TGGACGCACTGATATGTTGTGT 60.289 45.455 0.00 0.00 34.52 3.72
593 610 2.094258 GGACGCACTGATATGTTGTGTG 59.906 50.000 0.00 0.00 44.68 3.82
594 611 2.076100 ACGCACTGATATGTTGTGTGG 58.924 47.619 13.71 5.22 43.80 4.17
595 612 1.398041 CGCACTGATATGTTGTGTGGG 59.602 52.381 0.00 0.00 38.20 4.61
596 613 1.745087 GCACTGATATGTTGTGTGGGG 59.255 52.381 0.00 0.00 34.52 4.96
597 614 1.745087 CACTGATATGTTGTGTGGGGC 59.255 52.381 0.00 0.00 0.00 5.80
598 615 1.354031 ACTGATATGTTGTGTGGGGCA 59.646 47.619 0.00 0.00 0.00 5.36
606 623 3.758172 GTGTGGGGCACAAATCGT 58.242 55.556 0.00 0.00 46.28 3.73
607 624 1.579429 GTGTGGGGCACAAATCGTC 59.421 57.895 0.00 0.00 46.28 4.20
608 625 1.602323 TGTGGGGCACAAATCGTCC 60.602 57.895 0.00 0.00 41.69 4.79
609 626 1.602323 GTGGGGCACAAATCGTCCA 60.602 57.895 0.00 0.00 34.08 4.02
610 627 1.602323 TGGGGCACAAATCGTCCAC 60.602 57.895 0.00 0.00 0.00 4.02
611 628 1.303317 GGGGCACAAATCGTCCACT 60.303 57.895 0.00 0.00 0.00 4.00
612 629 1.586154 GGGGCACAAATCGTCCACTG 61.586 60.000 0.00 0.00 0.00 3.66
613 630 0.889186 GGGCACAAATCGTCCACTGT 60.889 55.000 0.00 0.00 0.00 3.55
614 631 0.238289 GGCACAAATCGTCCACTGTG 59.762 55.000 0.00 0.00 41.68 3.66
615 632 3.753774 CACAAATCGTCCACTGTGC 57.246 52.632 1.29 0.00 33.41 4.57
616 633 0.943673 CACAAATCGTCCACTGTGCA 59.056 50.000 1.29 0.00 33.41 4.57
617 634 1.536766 CACAAATCGTCCACTGTGCAT 59.463 47.619 1.29 0.00 33.41 3.96
618 635 1.806542 ACAAATCGTCCACTGTGCATC 59.193 47.619 1.29 0.00 0.00 3.91
619 636 1.078709 AAATCGTCCACTGTGCATCG 58.921 50.000 1.29 6.71 0.00 3.84
620 637 0.037326 AATCGTCCACTGTGCATCGT 60.037 50.000 1.29 0.00 0.00 3.73
621 638 0.737367 ATCGTCCACTGTGCATCGTG 60.737 55.000 1.29 10.39 0.00 4.35
622 639 1.664649 CGTCCACTGTGCATCGTGT 60.665 57.895 14.64 0.00 0.00 4.49
623 640 1.862123 GTCCACTGTGCATCGTGTG 59.138 57.895 14.64 9.83 0.00 3.82
655 672 6.780944 CATAGCAATGCTCTTAACGAAAAC 57.219 37.500 12.53 0.00 40.44 2.43
657 674 3.057526 AGCAATGCTCTTAACGAAAACCC 60.058 43.478 0.00 0.00 30.62 4.11
660 677 0.800631 GCTCTTAACGAAAACCCGGG 59.199 55.000 22.25 22.25 0.00 5.73
661 3333 0.800631 CTCTTAACGAAAACCCGGGC 59.199 55.000 24.08 2.28 0.00 6.13
668 3340 1.788067 CGAAAACCCGGGCGAAAACT 61.788 55.000 24.08 0.00 0.00 2.66
1436 4113 7.757173 CGATCAGATGATATGTTAGATTCCGTT 59.243 37.037 0.00 0.00 34.37 4.44
1438 4115 6.646653 TCAGATGATATGTTAGATTCCGTTGC 59.353 38.462 0.00 0.00 0.00 4.17
1448 4125 1.936547 GATTCCGTTGCTTCTGCTAGG 59.063 52.381 0.00 0.00 40.48 3.02
1505 4182 1.068055 GGTTCTTCGTAGCCTCGTTGA 60.068 52.381 0.00 0.00 0.00 3.18
1517 4194 1.535462 CCTCGTTGATGTTGTTGACCC 59.465 52.381 0.00 0.00 0.00 4.46
1529 4206 0.030235 GTTGACCCGAACCAGTTTGC 59.970 55.000 0.00 0.00 0.00 3.68
1531 4208 3.249973 GACCCGAACCAGTTTGCGC 62.250 63.158 0.00 0.00 0.00 6.09
1538 4215 1.195900 GAACCAGTTTGCGCGTGATTA 59.804 47.619 8.43 0.00 0.00 1.75
1543 4220 2.410392 CAGTTTGCGCGTGATTACTGTA 59.590 45.455 8.43 0.00 0.00 2.74
1556 4233 3.936372 TTACTGTACCAGTGCTCTGTC 57.064 47.619 14.31 5.68 45.01 3.51
1732 4409 7.880059 TCTATAAGATGCAATGAACTCATCG 57.120 36.000 0.00 0.00 40.94 3.84
1733 4410 7.436933 TCTATAAGATGCAATGAACTCATCGT 58.563 34.615 0.00 0.00 40.94 3.73
1787 4464 0.607489 AAGCAGGCTACTTGTGCAGG 60.607 55.000 0.00 0.00 39.80 4.85
1801 4478 2.239402 TGTGCAGGAGAATGCTATTCCA 59.761 45.455 0.00 0.00 46.63 3.53
1896 4573 6.206829 CACATAATCTGATTGCATGTCCTCAT 59.793 38.462 13.01 0.00 34.21 2.90
2477 5164 6.718454 AGATATCAACGATGCTAATGCTTC 57.282 37.500 5.32 0.00 40.48 3.86
2886 5685 7.494211 TGTACGGCTTGATGTATACACTTAAT 58.506 34.615 7.96 0.00 0.00 1.40
3159 8424 2.522836 ATCGCTCCATGCTCTGTAAG 57.477 50.000 0.00 0.00 40.11 2.34
3261 10604 2.357075 GCTGTAGCTTGTTTCCCCTAC 58.643 52.381 0.00 0.00 38.21 3.18
3437 10783 7.542130 ACACACTTGAATGAACTTCTTTTTGTC 59.458 33.333 0.00 0.00 34.75 3.18
3583 10931 5.118990 GCTGAGCTCCTTGTTACATATTCA 58.881 41.667 12.15 0.00 0.00 2.57
3584 10932 5.762218 GCTGAGCTCCTTGTTACATATTCAT 59.238 40.000 12.15 0.00 0.00 2.57
3655 11003 3.431486 CCCTGCTATGTCCTGAAGAACTC 60.431 52.174 0.00 0.00 0.00 3.01
4018 11916 1.663379 GGCACGTTGGGCTAAATCCC 61.663 60.000 0.00 0.00 46.73 3.85
4039 11937 2.040178 GATCCAGTAGACCGTTCCCAT 58.960 52.381 0.00 0.00 0.00 4.00
4116 12022 4.240096 CCAAACATTCAGGACAAATCAGC 58.760 43.478 0.00 0.00 0.00 4.26
4224 12130 6.636447 GCCTTGTTTTATTTTTGCATTTGGAC 59.364 34.615 0.00 0.00 0.00 4.02
4265 12187 2.877097 TTTGTATCTGGCAGGCTTCA 57.123 45.000 15.73 6.58 0.00 3.02
4267 12189 0.253044 TGTATCTGGCAGGCTTCACC 59.747 55.000 15.73 0.00 39.61 4.02
4417 12347 7.066284 GTGAACATATTTGTTGACTAGGCTCAT 59.934 37.037 10.48 0.00 46.01 2.90
4435 12365 8.668510 AGGCTCATTTATACTTGTAGATTGTG 57.331 34.615 0.00 0.00 0.00 3.33
4569 12502 5.580691 GCACACAGTAATCATTGCACTACTA 59.419 40.000 0.00 0.00 0.00 1.82
4678 12617 5.163237 ACTGTAGGAAGTACAACCAACACAT 60.163 40.000 10.22 0.00 41.28 3.21
4894 12848 2.189594 TGGAAGTGATGCAGGAACAG 57.810 50.000 0.00 0.00 0.00 3.16
5125 13119 1.337823 CGACCCCAGTAAGTGAACCTG 60.338 57.143 0.00 0.00 0.00 4.00
5147 13141 7.650104 ACCTGTTTGTTCCGTTTTACATAAATG 59.350 33.333 0.00 0.00 0.00 2.32
5231 13226 8.573885 CAGGTAATTGCAGATATTGACAATGAT 58.426 33.333 11.05 1.05 35.31 2.45
5233 13228 8.570488 GGTAATTGCAGATATTGACAATGATGA 58.430 33.333 11.05 0.00 35.31 2.92
5292 13413 1.421485 CGCGAGTAAGGCTGCTTTG 59.579 57.895 0.00 0.00 0.00 2.77
5394 13523 8.729756 CAGTTTATTTGTGATGTCCTATGTTGA 58.270 33.333 0.00 0.00 0.00 3.18
5712 13872 6.292114 CGCAACGTGAGCACTTCATTATATAA 60.292 38.462 12.89 0.00 38.29 0.98
5713 13873 7.406553 GCAACGTGAGCACTTCATTATATAAA 58.593 34.615 8.24 0.00 38.29 1.40
6173 14333 5.846203 TGTACAAGACCTGGTGTAAAGTAC 58.154 41.667 18.83 18.83 32.23 2.73
6550 14711 3.579586 TCACCCTATTCTTTGTACGGTGT 59.420 43.478 9.61 0.00 40.16 4.16
6612 14774 3.496130 GCCGATGTAATCCATGTCTCTTG 59.504 47.826 0.00 0.00 41.39 3.02
6613 14775 4.740634 GCCGATGTAATCCATGTCTCTTGA 60.741 45.833 0.00 0.00 41.39 3.02
6614 14776 4.747108 CCGATGTAATCCATGTCTCTTGAC 59.253 45.833 0.00 0.00 41.39 3.18
6808 14973 9.047871 GTTAAAATAAAGTTATCACACAGACGC 57.952 33.333 0.00 0.00 0.00 5.19
6845 15010 6.146347 AGCATCTTCGTCTTCTTTACTTTGTC 59.854 38.462 0.00 0.00 0.00 3.18
6945 15594 3.812053 GAGATGGCCACACTGATATTGTC 59.188 47.826 8.16 0.00 0.00 3.18
7070 15719 5.588246 TCTTGTTAGTTGACATGAGCAAACA 59.412 36.000 0.00 2.72 32.14 2.83
7378 16027 2.439507 TGTCTTTTGCTTCTCCACTCCT 59.560 45.455 0.00 0.00 0.00 3.69
8046 16817 1.630148 GATGTTCCTTGTCCTCGTCG 58.370 55.000 0.00 0.00 0.00 5.12
8102 16873 0.509499 TTTCGCGGAACAACATCGAC 59.491 50.000 6.13 0.00 0.00 4.20
8108 16879 1.654105 CGGAACAACATCGACTAGTGC 59.346 52.381 0.00 0.00 0.00 4.40
8109 16880 1.654105 GGAACAACATCGACTAGTGCG 59.346 52.381 0.00 4.15 0.00 5.34
8112 16883 1.153628 AACATCGACTAGTGCGGCC 60.154 57.895 0.00 0.00 0.00 6.13
8115 16886 4.753662 TCGACTAGTGCGGCCCCT 62.754 66.667 0.00 0.00 0.00 4.79
8138 16909 3.448267 CGAAGCAGATCAAGAGGCA 57.552 52.632 0.00 0.00 0.00 4.75
8142 16913 1.077930 GCAGATCAAGAGGCAGGCA 60.078 57.895 0.00 0.00 0.00 4.75
8143 16914 1.096386 GCAGATCAAGAGGCAGGCAG 61.096 60.000 0.00 0.00 0.00 4.85
8145 16916 0.913451 AGATCAAGAGGCAGGCAGGT 60.913 55.000 0.00 0.00 0.00 4.00
8160 16931 3.866582 GGTCCGGCTCTCCCATGG 61.867 72.222 4.14 4.14 0.00 3.66
8161 16932 3.083997 GTCCGGCTCTCCCATGGT 61.084 66.667 11.73 0.00 0.00 3.55
8187 16958 0.177141 ACTGCACACCGTAACACACT 59.823 50.000 0.00 0.00 0.00 3.55
8194 16965 0.761702 ACCGTAACACACTGGGGAGT 60.762 55.000 0.00 0.00 0.00 3.85
8218 16989 1.094073 GCAGTCTGCGCCATGAGATT 61.094 55.000 9.53 0.00 31.71 2.40
8219 16990 0.656259 CAGTCTGCGCCATGAGATTG 59.344 55.000 4.18 4.10 0.00 2.67
8479 17686 1.197721 GTGATGTCCGGAGCTTGTTTG 59.802 52.381 3.06 0.00 0.00 2.93
8557 17764 3.947612 AAGCAGATGTCAGGGAATGAT 57.052 42.857 0.00 0.00 40.92 2.45
8651 17895 5.277825 CAGTCTCGATGTTTAGACCAGATC 58.722 45.833 0.00 0.00 42.56 2.75
8746 17990 2.094234 CGGGGAATGTTGGAACCAATTC 60.094 50.000 9.53 9.77 38.28 2.17
8751 17995 4.158579 GGAATGTTGGAACCAATTCTCTCC 59.841 45.833 9.53 8.03 38.28 3.71
8752 17996 3.154827 TGTTGGAACCAATTCTCTCCC 57.845 47.619 9.53 0.00 38.28 4.30
8761 18005 6.394345 AACCAATTCTCTCCCAGTCTTTAT 57.606 37.500 0.00 0.00 0.00 1.40
8793 18037 8.194104 TGGGTCAAAATATGCATACATTTGTAC 58.806 33.333 28.47 24.93 37.74 2.90
8871 18115 8.994429 TTAAAAGAACTGCAATGAAAACTGAA 57.006 26.923 0.00 0.00 0.00 3.02
8872 18116 7.529880 AAAAGAACTGCAATGAAAACTGAAG 57.470 32.000 0.00 0.00 0.00 3.02
8873 18117 6.455360 AAGAACTGCAATGAAAACTGAAGA 57.545 33.333 0.00 0.00 0.00 2.87
8875 18119 6.268566 AGAACTGCAATGAAAACTGAAGAAC 58.731 36.000 0.00 0.00 0.00 3.01
8876 18120 5.581126 ACTGCAATGAAAACTGAAGAACA 57.419 34.783 0.00 0.00 0.00 3.18
8877 18121 6.152932 ACTGCAATGAAAACTGAAGAACAT 57.847 33.333 0.00 0.00 0.00 2.71
8878 18122 7.275888 ACTGCAATGAAAACTGAAGAACATA 57.724 32.000 0.00 0.00 0.00 2.29
8880 18124 8.362639 ACTGCAATGAAAACTGAAGAACATAAT 58.637 29.630 0.00 0.00 0.00 1.28
8881 18125 8.523523 TGCAATGAAAACTGAAGAACATAATG 57.476 30.769 0.00 0.00 0.00 1.90
8889 18133 9.912634 AAAACTGAAGAACATAATGTAACATGG 57.087 29.630 0.00 0.00 0.00 3.66
8890 18134 8.862325 AACTGAAGAACATAATGTAACATGGA 57.138 30.769 0.00 0.00 0.00 3.41
8892 18136 9.295825 ACTGAAGAACATAATGTAACATGGAAA 57.704 29.630 0.00 0.00 0.00 3.13
8894 18138 9.906660 TGAAGAACATAATGTAACATGGAAAAC 57.093 29.630 0.00 0.00 0.00 2.43
8904 18148 9.859427 AATGTAACATGGAAAACTGAATATGTG 57.141 29.630 0.00 0.00 0.00 3.21
8905 18149 7.825681 TGTAACATGGAAAACTGAATATGTGG 58.174 34.615 0.00 0.00 0.00 4.17
8907 18151 4.771577 ACATGGAAAACTGAATATGTGGCA 59.228 37.500 0.00 0.00 0.00 4.92
8908 18152 5.422970 ACATGGAAAACTGAATATGTGGCAT 59.577 36.000 0.00 0.00 0.00 4.40
8909 18153 5.327616 TGGAAAACTGAATATGTGGCATG 57.672 39.130 0.00 0.00 0.00 4.06
8910 18154 4.160065 TGGAAAACTGAATATGTGGCATGG 59.840 41.667 0.00 0.00 0.00 3.66
8912 18156 5.105392 GGAAAACTGAATATGTGGCATGGAA 60.105 40.000 0.00 0.00 0.00 3.53
8913 18157 5.999205 AAACTGAATATGTGGCATGGAAA 57.001 34.783 0.00 0.00 0.00 3.13
8914 18158 5.999205 AACTGAATATGTGGCATGGAAAA 57.001 34.783 0.00 0.00 0.00 2.29
8915 18159 5.999205 ACTGAATATGTGGCATGGAAAAA 57.001 34.783 0.00 0.00 0.00 1.94
8916 18160 5.723295 ACTGAATATGTGGCATGGAAAAAC 58.277 37.500 0.00 0.00 0.00 2.43
8918 18162 6.070653 ACTGAATATGTGGCATGGAAAAACAT 60.071 34.615 0.00 0.00 35.70 2.71
8920 18164 7.845037 TGAATATGTGGCATGGAAAAACATAA 58.155 30.769 0.00 0.00 37.30 1.90
8921 18165 8.484575 TGAATATGTGGCATGGAAAAACATAAT 58.515 29.630 0.00 0.00 37.30 1.28
8922 18166 8.665643 AATATGTGGCATGGAAAAACATAATG 57.334 30.769 0.00 0.00 37.30 1.90
8923 18167 5.480642 TGTGGCATGGAAAAACATAATGT 57.519 34.783 0.00 0.00 0.00 2.71
8925 18169 6.997655 TGTGGCATGGAAAAACATAATGTAA 58.002 32.000 0.00 0.00 0.00 2.41
8926 18170 7.619050 TGTGGCATGGAAAAACATAATGTAAT 58.381 30.769 0.00 0.00 0.00 1.89
8927 18171 8.099537 TGTGGCATGGAAAAACATAATGTAATT 58.900 29.630 0.00 0.00 41.28 1.40
8929 18173 9.512588 TGGCATGGAAAAACATAATGTAATTTT 57.487 25.926 0.00 0.00 37.87 1.82
8953 18484 9.886132 TTTATTCTCAAATTGTACTACTCCCTC 57.114 33.333 0.00 0.00 0.00 4.30
8967 18498 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
8968 18499 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
8970 18501 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
8971 18502 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
8972 18503 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
8975 18506 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
8990 18521 6.935240 TTGTCTTTCTAGAGATTTCCTCCA 57.065 37.500 0.00 0.00 42.97 3.86
8992 18523 6.256819 TGTCTTTCTAGAGATTTCCTCCAGA 58.743 40.000 0.00 0.00 42.97 3.86
8993 18524 6.900186 TGTCTTTCTAGAGATTTCCTCCAGAT 59.100 38.462 0.00 0.00 38.97 2.90
8995 18526 6.553100 TCTTTCTAGAGATTTCCTCCAGATCC 59.447 42.308 0.00 0.00 38.97 3.36
8996 18527 5.678142 TCTAGAGATTTCCTCCAGATCCT 57.322 43.478 0.00 0.00 42.97 3.24
8997 18528 6.036926 TCTAGAGATTTCCTCCAGATCCTT 57.963 41.667 0.00 0.00 42.97 3.36
8998 18529 6.448202 TCTAGAGATTTCCTCCAGATCCTTT 58.552 40.000 0.00 0.00 42.97 3.11
8999 18530 5.370875 AGAGATTTCCTCCAGATCCTTTG 57.629 43.478 0.00 0.00 42.97 2.77
9000 18531 3.882288 GAGATTTCCTCCAGATCCTTTGC 59.118 47.826 0.00 0.00 35.87 3.68
9002 18533 1.673767 TTCCTCCAGATCCTTTGCCT 58.326 50.000 0.00 0.00 0.00 4.75
9003 18534 1.673767 TCCTCCAGATCCTTTGCCTT 58.326 50.000 0.00 0.00 0.00 4.35
9006 18537 3.788142 TCCTCCAGATCCTTTGCCTTATT 59.212 43.478 0.00 0.00 0.00 1.40
9008 18539 4.340381 CCTCCAGATCCTTTGCCTTATTTG 59.660 45.833 0.00 0.00 0.00 2.32
9010 18541 5.332743 TCCAGATCCTTTGCCTTATTTGTT 58.667 37.500 0.00 0.00 0.00 2.83
9011 18542 5.418840 TCCAGATCCTTTGCCTTATTTGTTC 59.581 40.000 0.00 0.00 0.00 3.18
9013 18544 6.295236 CCAGATCCTTTGCCTTATTTGTTCAA 60.295 38.462 0.00 0.00 0.00 2.69
9015 18546 7.656948 CAGATCCTTTGCCTTATTTGTTCAAAA 59.343 33.333 2.11 0.00 0.00 2.44
9016 18547 8.377799 AGATCCTTTGCCTTATTTGTTCAAAAT 58.622 29.630 2.11 0.00 0.00 1.82
9017 18548 8.922931 ATCCTTTGCCTTATTTGTTCAAAATT 57.077 26.923 2.11 0.00 0.00 1.82
9018 18549 8.744568 TCCTTTGCCTTATTTGTTCAAAATTT 57.255 26.923 2.11 0.00 0.00 1.82
9019 18550 9.838339 TCCTTTGCCTTATTTGTTCAAAATTTA 57.162 25.926 2.11 0.00 0.00 1.40
9020 18551 9.877137 CCTTTGCCTTATTTGTTCAAAATTTAC 57.123 29.630 2.11 0.00 0.00 2.01
9024 18555 9.606631 TGCCTTATTTGTTCAAAATTTACAAGT 57.393 25.926 5.43 5.65 33.74 3.16
9033 18564 8.015087 TGTTCAAAATTTACAAGTATCTGCGAG 58.985 33.333 0.00 0.00 0.00 5.03
9034 18565 7.899178 TCAAAATTTACAAGTATCTGCGAGA 57.101 32.000 0.00 0.00 0.00 4.04
9035 18566 8.492673 TCAAAATTTACAAGTATCTGCGAGAT 57.507 30.769 0.00 4.45 38.70 2.75
9050 18581 8.988064 ATCTGCGAGATACGTATTCATAATTT 57.012 30.769 9.92 0.00 44.60 1.82
9051 18582 8.227731 TCTGCGAGATACGTATTCATAATTTG 57.772 34.615 9.92 0.00 44.60 2.32
9052 18583 7.865889 TCTGCGAGATACGTATTCATAATTTGT 59.134 33.333 9.92 0.00 44.60 2.83
9054 18585 8.822855 TGCGAGATACGTATTCATAATTTGTTT 58.177 29.630 9.92 0.00 44.60 2.83
9055 18586 9.302773 GCGAGATACGTATTCATAATTTGTTTC 57.697 33.333 9.92 0.00 44.60 2.78
9056 18587 9.793245 CGAGATACGTATTCATAATTTGTTTCC 57.207 33.333 9.92 0.00 37.22 3.13
9061 18592 8.343168 ACGTATTCATAATTTGTTTCCCTTGA 57.657 30.769 0.00 0.00 0.00 3.02
9064 18595 9.921637 GTATTCATAATTTGTTTCCCTTGACAA 57.078 29.630 0.00 0.00 34.22 3.18
9066 18597 7.595819 TCATAATTTGTTTCCCTTGACAAGT 57.404 32.000 14.03 0.00 37.12 3.16
9068 18599 5.675684 AATTTGTTTCCCTTGACAAGTGT 57.324 34.783 14.03 0.00 37.12 3.55
9070 18601 5.828299 TTTGTTTCCCTTGACAAGTGTAG 57.172 39.130 14.03 0.00 37.12 2.74
9071 18602 4.497291 TGTTTCCCTTGACAAGTGTAGT 57.503 40.909 14.03 0.00 0.00 2.73
9072 18603 5.617528 TGTTTCCCTTGACAAGTGTAGTA 57.382 39.130 14.03 0.00 0.00 1.82
9073 18604 5.991861 TGTTTCCCTTGACAAGTGTAGTAA 58.008 37.500 14.03 0.00 0.00 2.24
9075 18606 6.708949 TGTTTCCCTTGACAAGTGTAGTAATC 59.291 38.462 14.03 0.00 0.00 1.75
9076 18607 6.681729 TTCCCTTGACAAGTGTAGTAATCT 57.318 37.500 14.03 0.00 0.00 2.40
9077 18608 6.681729 TCCCTTGACAAGTGTAGTAATCTT 57.318 37.500 14.03 0.00 0.00 2.40
9078 18609 6.698380 TCCCTTGACAAGTGTAGTAATCTTC 58.302 40.000 14.03 0.00 0.00 2.87
9079 18610 6.497259 TCCCTTGACAAGTGTAGTAATCTTCT 59.503 38.462 14.03 0.00 0.00 2.85
9083 18614 9.261180 CTTGACAAGTGTAGTAATCTTCTTTCA 57.739 33.333 7.05 0.00 0.00 2.69
9084 18615 9.607988 TTGACAAGTGTAGTAATCTTCTTTCAA 57.392 29.630 0.00 0.00 0.00 2.69
9085 18616 9.261180 TGACAAGTGTAGTAATCTTCTTTCAAG 57.739 33.333 0.00 0.00 0.00 3.02
9086 18617 9.477484 GACAAGTGTAGTAATCTTCTTTCAAGA 57.523 33.333 0.00 0.00 0.00 3.02
9098 18944 7.992180 TCTTCTTTCAAGAAAACTGCAAATC 57.008 32.000 3.64 0.00 43.84 2.17
9100 18946 8.253113 TCTTCTTTCAAGAAAACTGCAAATCTT 58.747 29.630 3.64 0.00 43.84 2.40
9101 18947 7.992180 TCTTTCAAGAAAACTGCAAATCTTC 57.008 32.000 0.00 0.00 30.01 2.87
9105 18951 5.067153 TCAAGAAAACTGCAAATCTTCCGAA 59.933 36.000 0.00 0.00 30.01 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.590007 CATGCTGGAGCGGGCTAC 60.590 66.667 0.00 0.00 45.83 3.58
41 42 3.515286 CTTGCATGCTGGAGCGGG 61.515 66.667 20.33 0.00 45.83 6.13
50 51 0.896923 TCCCAACCAATCTTGCATGC 59.103 50.000 11.82 11.82 0.00 4.06
64 65 3.014110 ACTTCTCCTAATCCTCCTCCCAA 59.986 47.826 0.00 0.00 0.00 4.12
77 78 5.250543 TGATTTTGATCCACCACTTCTCCTA 59.749 40.000 0.00 0.00 0.00 2.94
87 88 8.725148 GTCATATCATAGTGATTTTGATCCACC 58.275 37.037 0.00 0.00 38.26 4.61
88 89 9.276590 TGTCATATCATAGTGATTTTGATCCAC 57.723 33.333 0.00 0.00 38.26 4.02
98 99 5.555017 GCCAAGGTGTCATATCATAGTGAT 58.445 41.667 0.00 0.00 40.72 3.06
125 126 6.201234 TCGATCACAACTTCGTACAAAAATCA 59.799 34.615 0.00 0.00 36.74 2.57
153 155 0.034574 TATGCTTCATGGGTTGCGGT 60.035 50.000 0.00 0.00 0.00 5.68
171 173 6.663093 ACATGTTAAAAGCCATCCATCACTTA 59.337 34.615 0.00 0.00 0.00 2.24
211 213 9.416794 CTTCTGCACATACGATTATTTCTATCT 57.583 33.333 0.00 0.00 0.00 1.98
212 214 9.197694 ACTTCTGCACATACGATTATTTCTATC 57.802 33.333 0.00 0.00 0.00 2.08
235 237 1.933021 TGAGTCCACCGTATCCACTT 58.067 50.000 0.00 0.00 0.00 3.16
244 246 1.248486 TCTCTGACTTGAGTCCACCG 58.752 55.000 8.56 0.00 44.15 4.94
279 281 2.140717 CGCGACTTAAGGTTTCCACTT 58.859 47.619 0.00 0.00 0.00 3.16
282 284 1.614903 TCTCGCGACTTAAGGTTTCCA 59.385 47.619 3.71 0.00 0.00 3.53
290 292 1.741706 CCACTAGGTCTCGCGACTTAA 59.258 52.381 3.71 0.00 40.10 1.85
419 429 8.791675 GGATGAAAGAAATCTTTTGTCTCTCTT 58.208 33.333 9.60 0.00 45.37 2.85
421 431 8.103948 TGGATGAAAGAAATCTTTTGTCTCTC 57.896 34.615 9.60 0.00 45.37 3.20
422 432 8.647256 ATGGATGAAAGAAATCTTTTGTCTCT 57.353 30.769 9.60 2.12 45.37 3.10
423 433 9.702494 AAATGGATGAAAGAAATCTTTTGTCTC 57.298 29.630 9.60 5.15 45.37 3.36
459 476 8.984891 TTCGTTAATAACCGAACAATTCTCTA 57.015 30.769 0.00 0.00 38.09 2.43
470 487 5.612276 GCAGTTTCGTTTCGTTAATAACCGA 60.612 40.000 0.00 0.00 0.00 4.69
475 492 5.389098 GCAGAGCAGTTTCGTTTCGTTAATA 60.389 40.000 0.00 0.00 0.00 0.98
476 493 4.610680 GCAGAGCAGTTTCGTTTCGTTAAT 60.611 41.667 0.00 0.00 0.00 1.40
477 494 3.302870 GCAGAGCAGTTTCGTTTCGTTAA 60.303 43.478 0.00 0.00 0.00 2.01
478 495 2.220133 GCAGAGCAGTTTCGTTTCGTTA 59.780 45.455 0.00 0.00 0.00 3.18
479 496 1.003866 GCAGAGCAGTTTCGTTTCGTT 60.004 47.619 0.00 0.00 0.00 3.85
480 497 0.582005 GCAGAGCAGTTTCGTTTCGT 59.418 50.000 0.00 0.00 0.00 3.85
481 498 0.449507 CGCAGAGCAGTTTCGTTTCG 60.450 55.000 0.00 0.00 0.00 3.46
482 499 0.110644 CCGCAGAGCAGTTTCGTTTC 60.111 55.000 0.00 0.00 0.00 2.78
483 500 0.531974 TCCGCAGAGCAGTTTCGTTT 60.532 50.000 0.00 0.00 0.00 3.60
484 501 1.069090 TCCGCAGAGCAGTTTCGTT 59.931 52.632 0.00 0.00 0.00 3.85
485 502 1.664965 GTCCGCAGAGCAGTTTCGT 60.665 57.895 0.00 0.00 0.00 3.85
486 503 2.720758 CGTCCGCAGAGCAGTTTCG 61.721 63.158 0.00 0.00 0.00 3.46
487 504 2.383527 CCGTCCGCAGAGCAGTTTC 61.384 63.158 0.00 0.00 0.00 2.78
488 505 1.812686 TACCGTCCGCAGAGCAGTTT 61.813 55.000 0.00 0.00 0.00 2.66
489 506 1.812686 TTACCGTCCGCAGAGCAGTT 61.813 55.000 0.00 0.00 0.00 3.16
490 507 1.812686 TTTACCGTCCGCAGAGCAGT 61.813 55.000 0.00 0.00 0.00 4.40
491 508 1.080093 TTTACCGTCCGCAGAGCAG 60.080 57.895 0.00 0.00 0.00 4.24
492 509 1.373748 GTTTACCGTCCGCAGAGCA 60.374 57.895 0.00 0.00 0.00 4.26
493 510 1.080025 AGTTTACCGTCCGCAGAGC 60.080 57.895 0.00 0.00 0.00 4.09
494 511 0.736325 CCAGTTTACCGTCCGCAGAG 60.736 60.000 0.00 0.00 0.00 3.35
495 512 1.290955 CCAGTTTACCGTCCGCAGA 59.709 57.895 0.00 0.00 0.00 4.26
496 513 2.388232 GCCAGTTTACCGTCCGCAG 61.388 63.158 0.00 0.00 0.00 5.18
497 514 2.357760 GCCAGTTTACCGTCCGCA 60.358 61.111 0.00 0.00 0.00 5.69
498 515 2.047560 AGCCAGTTTACCGTCCGC 60.048 61.111 0.00 0.00 0.00 5.54
499 516 2.388232 GCAGCCAGTTTACCGTCCG 61.388 63.158 0.00 0.00 0.00 4.79
500 517 1.302192 TGCAGCCAGTTTACCGTCC 60.302 57.895 0.00 0.00 0.00 4.79
501 518 1.866925 GTGCAGCCAGTTTACCGTC 59.133 57.895 0.00 0.00 0.00 4.79
502 519 1.959226 CGTGCAGCCAGTTTACCGT 60.959 57.895 0.00 0.00 0.00 4.83
503 520 1.666553 TCGTGCAGCCAGTTTACCG 60.667 57.895 0.00 0.00 0.00 4.02
504 521 1.866925 GTCGTGCAGCCAGTTTACC 59.133 57.895 0.00 0.00 0.00 2.85
505 522 0.942410 TCGTCGTGCAGCCAGTTTAC 60.942 55.000 0.00 0.00 0.00 2.01
506 523 0.942410 GTCGTCGTGCAGCCAGTTTA 60.942 55.000 0.00 0.00 0.00 2.01
507 524 2.108157 TCGTCGTGCAGCCAGTTT 59.892 55.556 0.00 0.00 0.00 2.66
508 525 2.661866 GTCGTCGTGCAGCCAGTT 60.662 61.111 0.00 0.00 0.00 3.16
509 526 3.606662 AGTCGTCGTGCAGCCAGT 61.607 61.111 0.00 0.00 0.00 4.00
510 527 3.108289 CAGTCGTCGTGCAGCCAG 61.108 66.667 0.00 0.00 0.00 4.85
516 533 2.805353 ATCGTGCAGTCGTCGTGC 60.805 61.111 1.11 1.11 41.59 5.34
517 534 3.059472 GCATCGTGCAGTCGTCGTG 62.059 63.158 5.30 0.00 44.26 4.35
518 535 2.805353 GCATCGTGCAGTCGTCGT 60.805 61.111 5.30 0.00 44.26 4.34
535 552 0.462047 GGTGTGGACGGCTGGATTAG 60.462 60.000 0.00 0.00 0.00 1.73
536 553 1.195442 TGGTGTGGACGGCTGGATTA 61.195 55.000 0.00 0.00 0.00 1.75
537 554 2.351276 GGTGTGGACGGCTGGATT 59.649 61.111 0.00 0.00 0.00 3.01
538 555 2.927856 TGGTGTGGACGGCTGGAT 60.928 61.111 0.00 0.00 0.00 3.41
539 556 3.936203 GTGGTGTGGACGGCTGGA 61.936 66.667 0.00 0.00 0.00 3.86
540 557 2.958578 AAAGTGGTGTGGACGGCTGG 62.959 60.000 0.00 0.00 0.00 4.85
541 558 1.507141 GAAAGTGGTGTGGACGGCTG 61.507 60.000 0.00 0.00 0.00 4.85
542 559 1.227853 GAAAGTGGTGTGGACGGCT 60.228 57.895 0.00 0.00 0.00 5.52
543 560 0.889186 ATGAAAGTGGTGTGGACGGC 60.889 55.000 0.00 0.00 0.00 5.68
544 561 0.874390 CATGAAAGTGGTGTGGACGG 59.126 55.000 0.00 0.00 0.00 4.79
545 562 1.877637 TCATGAAAGTGGTGTGGACG 58.122 50.000 0.00 0.00 0.00 4.79
546 563 4.142600 GCTAATCATGAAAGTGGTGTGGAC 60.143 45.833 0.00 0.00 0.00 4.02
547 564 4.009675 GCTAATCATGAAAGTGGTGTGGA 58.990 43.478 0.00 0.00 0.00 4.02
548 565 3.758023 TGCTAATCATGAAAGTGGTGTGG 59.242 43.478 0.00 0.00 0.00 4.17
549 566 5.571784 ATGCTAATCATGAAAGTGGTGTG 57.428 39.130 0.00 0.00 33.26 3.82
561 578 2.158914 TCAGTGCGTCCATGCTAATCAT 60.159 45.455 0.00 0.00 35.31 2.45
562 579 1.206849 TCAGTGCGTCCATGCTAATCA 59.793 47.619 0.00 0.00 35.36 2.57
563 580 1.939974 TCAGTGCGTCCATGCTAATC 58.060 50.000 0.00 0.00 35.36 1.75
564 581 2.627515 ATCAGTGCGTCCATGCTAAT 57.372 45.000 0.00 0.00 35.36 1.73
565 582 3.181466 ACATATCAGTGCGTCCATGCTAA 60.181 43.478 0.00 0.00 35.36 3.09
566 583 2.365293 ACATATCAGTGCGTCCATGCTA 59.635 45.455 0.00 0.00 35.36 3.49
567 584 1.139654 ACATATCAGTGCGTCCATGCT 59.860 47.619 0.00 0.00 35.36 3.79
568 585 1.586422 ACATATCAGTGCGTCCATGC 58.414 50.000 0.00 0.00 0.00 4.06
569 586 2.938451 ACAACATATCAGTGCGTCCATG 59.062 45.455 0.00 0.00 0.00 3.66
570 587 2.938451 CACAACATATCAGTGCGTCCAT 59.062 45.455 0.00 0.00 0.00 3.41
571 588 2.289382 ACACAACATATCAGTGCGTCCA 60.289 45.455 0.00 0.00 36.76 4.02
572 589 2.094258 CACACAACATATCAGTGCGTCC 59.906 50.000 0.00 0.00 36.76 4.79
573 590 2.094258 CCACACAACATATCAGTGCGTC 59.906 50.000 0.00 0.00 36.76 5.19
574 591 2.076100 CCACACAACATATCAGTGCGT 58.924 47.619 0.00 0.00 36.76 5.24
575 592 1.398041 CCCACACAACATATCAGTGCG 59.602 52.381 0.00 0.00 36.76 5.34
576 593 1.745087 CCCCACACAACATATCAGTGC 59.255 52.381 0.00 0.00 36.76 4.40
577 594 1.745087 GCCCCACACAACATATCAGTG 59.255 52.381 0.00 0.00 39.12 3.66
578 595 1.354031 TGCCCCACACAACATATCAGT 59.646 47.619 0.00 0.00 0.00 3.41
579 596 2.127271 TGCCCCACACAACATATCAG 57.873 50.000 0.00 0.00 0.00 2.90
589 606 1.579429 GACGATTTGTGCCCCACAC 59.421 57.895 0.00 0.00 44.47 3.82
590 607 1.602323 GGACGATTTGTGCCCCACA 60.602 57.895 0.00 0.00 43.02 4.17
591 608 1.602323 TGGACGATTTGTGCCCCAC 60.602 57.895 0.00 0.00 38.31 4.61
592 609 1.602323 GTGGACGATTTGTGCCCCA 60.602 57.895 0.00 0.00 38.31 4.96
593 610 1.303317 AGTGGACGATTTGTGCCCC 60.303 57.895 0.00 0.00 38.31 5.80
594 611 0.889186 ACAGTGGACGATTTGTGCCC 60.889 55.000 0.00 0.00 38.31 5.36
595 612 0.238289 CACAGTGGACGATTTGTGCC 59.762 55.000 0.00 0.00 38.31 5.01
596 613 3.753774 CACAGTGGACGATTTGTGC 57.246 52.632 0.00 0.00 39.78 4.57
597 614 0.943673 TGCACAGTGGACGATTTGTG 59.056 50.000 1.84 0.00 42.80 3.33
598 615 1.806542 GATGCACAGTGGACGATTTGT 59.193 47.619 1.84 0.00 0.00 2.83
599 616 1.201954 CGATGCACAGTGGACGATTTG 60.202 52.381 1.84 0.00 0.00 2.32
600 617 1.078709 CGATGCACAGTGGACGATTT 58.921 50.000 1.84 0.00 0.00 2.17
601 618 0.037326 ACGATGCACAGTGGACGATT 60.037 50.000 18.74 0.00 0.00 3.34
602 619 0.737367 CACGATGCACAGTGGACGAT 60.737 55.000 18.74 0.00 34.93 3.73
603 620 1.372872 CACGATGCACAGTGGACGA 60.373 57.895 18.74 0.00 34.93 4.20
604 621 1.664649 ACACGATGCACAGTGGACG 60.665 57.895 22.33 12.94 42.25 4.79
605 622 1.862123 CACACGATGCACAGTGGAC 59.138 57.895 22.33 0.00 42.25 4.02
606 623 4.359475 CACACGATGCACAGTGGA 57.641 55.556 22.33 0.00 42.25 4.02
632 649 5.739161 GGTTTTCGTTAAGAGCATTGCTATG 59.261 40.000 11.96 3.56 39.88 2.23
633 650 5.163652 GGGTTTTCGTTAAGAGCATTGCTAT 60.164 40.000 11.96 5.35 39.88 2.97
634 651 4.155280 GGGTTTTCGTTAAGAGCATTGCTA 59.845 41.667 11.96 0.00 39.88 3.49
635 652 3.057526 GGGTTTTCGTTAAGAGCATTGCT 60.058 43.478 11.79 11.79 43.88 3.91
636 653 3.242518 GGGTTTTCGTTAAGAGCATTGC 58.757 45.455 0.00 0.00 0.00 3.56
637 654 3.488489 CGGGTTTTCGTTAAGAGCATTG 58.512 45.455 0.00 0.00 0.00 2.82
638 655 2.486592 CCGGGTTTTCGTTAAGAGCATT 59.513 45.455 0.00 0.00 0.00 3.56
639 656 2.081462 CCGGGTTTTCGTTAAGAGCAT 58.919 47.619 0.00 0.00 0.00 3.79
640 657 1.515081 CCGGGTTTTCGTTAAGAGCA 58.485 50.000 0.00 0.00 0.00 4.26
641 658 0.800631 CCCGGGTTTTCGTTAAGAGC 59.199 55.000 14.18 0.00 0.00 4.09
642 659 0.800631 GCCCGGGTTTTCGTTAAGAG 59.199 55.000 24.63 0.00 0.00 2.85
643 660 0.950071 CGCCCGGGTTTTCGTTAAGA 60.950 55.000 24.63 0.00 0.00 2.10
644 661 0.950071 TCGCCCGGGTTTTCGTTAAG 60.950 55.000 24.63 1.10 0.00 1.85
645 662 0.533755 TTCGCCCGGGTTTTCGTTAA 60.534 50.000 24.63 5.32 0.00 2.01
651 668 0.752376 TCAGTTTTCGCCCGGGTTTT 60.752 50.000 24.63 0.00 0.00 2.43
655 672 0.170339 GATTTCAGTTTTCGCCCGGG 59.830 55.000 19.09 19.09 0.00 5.73
657 674 1.804151 TCAGATTTCAGTTTTCGCCCG 59.196 47.619 0.00 0.00 0.00 6.13
660 677 5.387752 GCACAAATCAGATTTCAGTTTTCGC 60.388 40.000 5.32 0.00 0.00 4.70
661 3333 5.164254 CGCACAAATCAGATTTCAGTTTTCG 60.164 40.000 5.32 2.86 0.00 3.46
668 3340 3.063485 TCGTCGCACAAATCAGATTTCA 58.937 40.909 5.32 0.00 0.00 2.69
865 3538 3.391382 GTGGTGGGGGAGTCGGAG 61.391 72.222 0.00 0.00 0.00 4.63
1311 3987 0.976073 CGACTCACAGGTGGGGGTAT 60.976 60.000 4.07 0.00 34.74 2.73
1429 4106 2.014068 GCCTAGCAGAAGCAACGGAAT 61.014 52.381 0.00 0.00 45.49 3.01
1436 4113 2.185350 GCGAGCCTAGCAGAAGCA 59.815 61.111 0.00 0.00 45.49 3.91
1438 4115 1.882167 GCAGCGAGCCTAGCAGAAG 60.882 63.158 0.00 0.00 37.23 2.85
1448 4125 3.869272 CCAACGGATGCAGCGAGC 61.869 66.667 0.00 0.00 45.96 5.03
1505 4182 1.133915 ACTGGTTCGGGTCAACAACAT 60.134 47.619 0.00 0.00 0.00 2.71
1517 4194 2.170260 ATCACGCGCAAACTGGTTCG 62.170 55.000 5.73 0.00 0.00 3.95
1716 4393 5.604565 TCAGATACGATGAGTTCATTGCAT 58.395 37.500 8.88 2.61 40.59 3.96
1787 4464 7.663081 TGTATCAGGATTTGGAATAGCATTCTC 59.337 37.037 8.23 0.62 0.00 2.87
1801 4478 5.195940 CCAGACCAATGTGTATCAGGATTT 58.804 41.667 0.00 0.00 0.00 2.17
1896 4573 5.439721 CCAATGATCCCACAGTTTGATAGA 58.560 41.667 0.00 0.00 0.00 1.98
2477 5164 2.161808 CAGTGAAATTCAGGAGCAGCAG 59.838 50.000 0.00 0.00 0.00 4.24
2666 5361 6.098409 ACTTGAGTTGGAGTCTTCTTTAGTGA 59.902 38.462 0.00 0.00 0.00 3.41
3159 8424 2.249139 ACAGAGGGAACACACTACTCC 58.751 52.381 0.00 0.00 0.00 3.85
3261 10604 9.132521 CTTTGGACTTTGTAAGCTAAAATCATG 57.867 33.333 0.00 0.00 0.00 3.07
3437 10783 4.503910 TCCAACTTTCCATCACTATCACG 58.496 43.478 0.00 0.00 0.00 4.35
3632 10980 2.237392 GTTCTTCAGGACATAGCAGGGT 59.763 50.000 0.00 0.00 0.00 4.34
3736 11463 4.218312 AGGCCATCCTGGAATTAATGTTC 58.782 43.478 5.01 0.00 40.96 3.18
3899 11790 7.994911 ACAAATAAAGATCTGCATGTCCATAGA 59.005 33.333 0.00 0.00 0.00 1.98
3905 11796 8.524870 AACAAACAAATAAAGATCTGCATGTC 57.475 30.769 0.00 0.00 0.00 3.06
4039 11937 4.545208 TGAACTGTCATTAACATCCGGA 57.455 40.909 6.61 6.61 37.23 5.14
4116 12022 5.105997 GGTTCCTTTGAAGATTCATCACCAG 60.106 44.000 0.00 0.00 37.00 4.00
4296 12220 4.145052 CCAAACTAATAGCCCCTGATTCC 58.855 47.826 0.00 0.00 0.00 3.01
4364 12288 0.525761 CAATACTTTGTGGTGGGCGG 59.474 55.000 0.00 0.00 0.00 6.13
4405 12335 8.762481 TCTACAAGTATAAATGAGCCTAGTCA 57.238 34.615 0.00 0.00 0.00 3.41
4417 12347 8.717821 GTGAACTGCACAATCTACAAGTATAAA 58.282 33.333 0.00 0.00 46.91 1.40
4435 12365 7.141363 ACTCAAATATGTGAAAAGTGAACTGC 58.859 34.615 0.00 0.00 0.00 4.40
4569 12502 3.904339 GGATAGTCCACTACCCACATCAT 59.096 47.826 0.00 0.00 36.28 2.45
4894 12848 4.836125 TTTCAACAGTTGATTCTCCTGC 57.164 40.909 16.89 0.00 39.84 4.85
5125 13119 9.021863 TCAACATTTATGTAAAACGGAACAAAC 57.978 29.630 0.00 0.00 40.80 2.93
5231 13226 7.176515 ACAGCAATAACCATTTCTTGTACATCA 59.823 33.333 0.00 0.00 0.00 3.07
5233 13228 7.466746 ACAGCAATAACCATTTCTTGTACAT 57.533 32.000 0.00 0.00 0.00 2.29
5292 13413 4.826500 CACGAAATGCATTAGTAGCAGAC 58.173 43.478 13.39 0.00 46.36 3.51
5349 13478 4.197750 ACTGGCATTCAGAGCTTCTTATG 58.802 43.478 0.00 0.00 46.18 1.90
5712 13872 0.534203 CACCACGGTAACACAGGCTT 60.534 55.000 0.00 0.00 0.00 4.35
5713 13873 1.070786 CACCACGGTAACACAGGCT 59.929 57.895 0.00 0.00 0.00 4.58
6424 14585 1.904537 ACATCAGCAGTGACCATCTCA 59.095 47.619 0.00 0.00 34.75 3.27
6612 14774 5.406780 GTGTAGCCATTGCAGAGTATATGTC 59.593 44.000 0.00 0.00 41.13 3.06
6613 14775 5.163311 TGTGTAGCCATTGCAGAGTATATGT 60.163 40.000 0.00 0.00 41.13 2.29
6614 14776 5.299949 TGTGTAGCCATTGCAGAGTATATG 58.700 41.667 0.00 0.00 41.13 1.78
6685 14849 7.579761 ATTAAGGAGATTGAAGCAAGATTCC 57.420 36.000 0.00 0.00 0.00 3.01
6808 14973 3.492383 ACGAAGATGCTGCGATAGAAATG 59.508 43.478 1.19 0.00 35.81 2.32
6845 15010 7.658179 TTGAATATAGAAAAGCCTAGATGCG 57.342 36.000 0.00 0.00 36.02 4.73
7070 15719 2.039084 AGTCCTTGCGTCTTTTCTCCAT 59.961 45.455 0.00 0.00 0.00 3.41
7378 16027 1.728323 TGAGAGGATGGTGTGGTGAA 58.272 50.000 0.00 0.00 0.00 3.18
8081 16852 1.598132 TCGATGTTGTTCCGCGAAAAA 59.402 42.857 8.23 0.00 0.00 1.94
8115 16886 2.047370 TTGATCTGCTTCGCCGCA 60.047 55.556 0.00 0.00 38.40 5.69
8120 16891 1.288350 CTGCCTCTTGATCTGCTTCG 58.712 55.000 0.00 0.00 0.00 3.79
8142 16913 2.765807 CATGGGAGAGCCGGACCT 60.766 66.667 5.05 0.00 33.83 3.85
8143 16914 3.866582 CCATGGGAGAGCCGGACC 61.867 72.222 5.05 1.72 33.83 4.46
8145 16916 3.083349 CACCATGGGAGAGCCGGA 61.083 66.667 18.09 0.00 33.83 5.14
8160 16931 2.594592 GGTGTGCAGTGGTCCCAC 60.595 66.667 8.45 8.45 46.50 4.61
8161 16932 4.248842 CGGTGTGCAGTGGTCCCA 62.249 66.667 0.00 0.00 0.00 4.37
8168 16939 0.177141 AGTGTGTTACGGTGTGCAGT 59.823 50.000 0.00 0.00 0.00 4.40
8187 16958 3.695606 GACTGCGCTCACTCCCCA 61.696 66.667 9.73 0.00 0.00 4.96
8208 16979 3.294214 ACAGGATTTCCAATCTCATGGC 58.706 45.455 0.00 0.00 40.46 4.40
8218 16989 0.546122 AGCGGCATACAGGATTTCCA 59.454 50.000 1.45 0.00 38.89 3.53
8219 16990 0.947244 CAGCGGCATACAGGATTTCC 59.053 55.000 1.45 0.00 0.00 3.13
8304 17075 7.093988 TGTCACAAAATTCTTCCTCAAAACTCA 60.094 33.333 0.00 0.00 0.00 3.41
8356 17129 2.908088 GAACAGCGCGGCACATCATG 62.908 60.000 8.83 0.00 0.00 3.07
8358 17131 3.422303 GAACAGCGCGGCACATCA 61.422 61.111 8.83 0.00 0.00 3.07
8359 17132 2.637715 GATGAACAGCGCGGCACATC 62.638 60.000 22.65 22.65 0.00 3.06
8360 17133 2.747460 ATGAACAGCGCGGCACAT 60.747 55.556 8.83 10.63 0.00 3.21
8479 17686 2.730094 CCTTGTGGCCTTGCACAC 59.270 61.111 3.32 0.00 38.08 3.82
8557 17764 7.416964 ACAACAAAGGCCAGCATATATTTTA 57.583 32.000 5.01 0.00 0.00 1.52
8607 17851 5.885912 ACTGGTGCAAGTATAAATGGGTTAG 59.114 40.000 0.00 0.00 0.00 2.34
8651 17895 4.351192 CCTTGGAAAGTTGACTGAAAACG 58.649 43.478 0.00 0.00 44.25 3.60
8710 17954 1.443407 CCCGGTAGCATCTCAGGTG 59.557 63.158 0.00 0.00 0.00 4.00
8712 17956 1.048724 TTCCCCGGTAGCATCTCAGG 61.049 60.000 0.00 0.00 0.00 3.86
8746 17990 5.649831 CCCAAGAAAATAAAGACTGGGAGAG 59.350 44.000 0.00 0.00 36.22 3.20
8751 17995 6.648879 TTGACCCAAGAAAATAAAGACTGG 57.351 37.500 0.00 0.00 0.00 4.00
8761 18005 7.901029 TGTATGCATATTTTGACCCAAGAAAA 58.099 30.769 10.16 0.00 0.00 2.29
8852 18096 6.035843 TGTTCTTCAGTTTTCATTGCAGTTC 58.964 36.000 0.00 0.00 0.00 3.01
8854 18098 5.581126 TGTTCTTCAGTTTTCATTGCAGT 57.419 34.783 0.00 0.00 0.00 4.40
8863 18107 9.912634 CCATGTTACATTATGTTCTTCAGTTTT 57.087 29.630 2.23 0.00 0.00 2.43
8864 18108 9.295825 TCCATGTTACATTATGTTCTTCAGTTT 57.704 29.630 2.23 0.00 0.00 2.66
8866 18110 8.862325 TTCCATGTTACATTATGTTCTTCAGT 57.138 30.769 2.23 0.00 0.00 3.41
8870 18114 9.912634 CAGTTTTCCATGTTACATTATGTTCTT 57.087 29.630 2.23 0.00 0.00 2.52
8871 18115 9.295825 TCAGTTTTCCATGTTACATTATGTTCT 57.704 29.630 2.23 0.00 0.00 3.01
8872 18116 9.906660 TTCAGTTTTCCATGTTACATTATGTTC 57.093 29.630 2.23 0.00 0.00 3.18
8878 18122 9.859427 CACATATTCAGTTTTCCATGTTACATT 57.141 29.630 0.00 0.00 0.00 2.71
8880 18124 7.576666 GCCACATATTCAGTTTTCCATGTTACA 60.577 37.037 0.00 0.00 0.00 2.41
8881 18125 6.751888 GCCACATATTCAGTTTTCCATGTTAC 59.248 38.462 0.00 0.00 0.00 2.50
8885 18129 5.327616 TGCCACATATTCAGTTTTCCATG 57.672 39.130 0.00 0.00 0.00 3.66
8886 18130 5.163385 CCATGCCACATATTCAGTTTTCCAT 60.163 40.000 0.00 0.00 0.00 3.41
8889 18133 5.581126 TCCATGCCACATATTCAGTTTTC 57.419 39.130 0.00 0.00 0.00 2.29
8890 18134 5.999205 TTCCATGCCACATATTCAGTTTT 57.001 34.783 0.00 0.00 0.00 2.43
8892 18136 5.999205 TTTTCCATGCCACATATTCAGTT 57.001 34.783 0.00 0.00 0.00 3.16
8893 18137 5.245751 TGTTTTTCCATGCCACATATTCAGT 59.754 36.000 0.00 0.00 0.00 3.41
8894 18138 5.722263 TGTTTTTCCATGCCACATATTCAG 58.278 37.500 0.00 0.00 0.00 3.02
8895 18139 5.735285 TGTTTTTCCATGCCACATATTCA 57.265 34.783 0.00 0.00 0.00 2.57
8902 18146 8.491331 AATTACATTATGTTTTTCCATGCCAC 57.509 30.769 2.23 0.00 0.00 5.01
8927 18171 9.886132 GAGGGAGTAGTACAATTTGAGAATAAA 57.114 33.333 2.79 0.00 0.00 1.40
8929 18173 7.201884 CGGAGGGAGTAGTACAATTTGAGAATA 60.202 40.741 2.79 0.00 0.00 1.75
8932 18176 4.401519 CGGAGGGAGTAGTACAATTTGAGA 59.598 45.833 2.79 0.00 0.00 3.27
8933 18177 4.159879 ACGGAGGGAGTAGTACAATTTGAG 59.840 45.833 2.79 0.00 0.00 3.02
8934 18178 4.091549 ACGGAGGGAGTAGTACAATTTGA 58.908 43.478 2.79 0.00 0.00 2.69
8935 18179 4.467198 ACGGAGGGAGTAGTACAATTTG 57.533 45.455 2.52 0.00 0.00 2.32
8936 18180 5.247792 AGAAACGGAGGGAGTAGTACAATTT 59.752 40.000 2.52 0.00 0.00 1.82
8938 18182 4.351127 AGAAACGGAGGGAGTAGTACAAT 58.649 43.478 2.52 0.00 0.00 2.71
8940 18184 3.446442 AGAAACGGAGGGAGTAGTACA 57.554 47.619 2.52 0.00 0.00 2.90
8941 18185 5.904362 TTTAGAAACGGAGGGAGTAGTAC 57.096 43.478 0.00 0.00 0.00 2.73
8942 18186 8.773033 AATATTTAGAAACGGAGGGAGTAGTA 57.227 34.615 0.00 0.00 0.00 1.82
8943 18187 7.672122 AATATTTAGAAACGGAGGGAGTAGT 57.328 36.000 0.00 0.00 0.00 2.73
8944 18188 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
8967 18498 6.935240 TGGAGGAAATCTCTAGAAAGACAA 57.065 37.500 0.00 0.00 42.10 3.18
8986 18517 4.952335 ACAAATAAGGCAAAGGATCTGGAG 59.048 41.667 0.00 0.00 0.00 3.86
8987 18518 4.934356 ACAAATAAGGCAAAGGATCTGGA 58.066 39.130 0.00 0.00 0.00 3.86
8988 18519 5.185635 TGAACAAATAAGGCAAAGGATCTGG 59.814 40.000 0.00 0.00 0.00 3.86
8989 18520 6.271488 TGAACAAATAAGGCAAAGGATCTG 57.729 37.500 0.00 0.00 0.00 2.90
8990 18521 6.916360 TTGAACAAATAAGGCAAAGGATCT 57.084 33.333 0.00 0.00 0.00 2.75
8992 18523 8.922931 AATTTTGAACAAATAAGGCAAAGGAT 57.077 26.923 0.82 0.00 31.10 3.24
8993 18524 8.744568 AAATTTTGAACAAATAAGGCAAAGGA 57.255 26.923 0.82 0.00 31.10 3.36
8998 18529 9.606631 ACTTGTAAATTTTGAACAAATAAGGCA 57.393 25.926 0.00 0.00 33.05 4.75
9006 18537 8.346300 TCGCAGATACTTGTAAATTTTGAACAA 58.654 29.630 0.00 0.24 0.00 2.83
9008 18539 8.227791 TCTCGCAGATACTTGTAAATTTTGAAC 58.772 33.333 0.00 0.00 33.89 3.18
9010 18541 7.899178 TCTCGCAGATACTTGTAAATTTTGA 57.101 32.000 0.00 0.00 33.89 2.69
9026 18557 7.865889 ACAAATTATGAATACGTATCTCGCAGA 59.134 33.333 8.86 0.24 44.19 4.26
9027 18558 8.007821 ACAAATTATGAATACGTATCTCGCAG 57.992 34.615 8.86 0.00 44.19 5.18
9028 18559 7.940178 ACAAATTATGAATACGTATCTCGCA 57.060 32.000 8.86 5.77 44.19 5.10
9029 18560 9.302773 GAAACAAATTATGAATACGTATCTCGC 57.697 33.333 8.86 0.04 44.19 5.03
9030 18561 9.793245 GGAAACAAATTATGAATACGTATCTCG 57.207 33.333 8.86 0.00 46.00 4.04
9035 18566 9.451002 TCAAGGGAAACAAATTATGAATACGTA 57.549 29.630 0.00 0.00 0.00 3.57
9038 18569 9.921637 TTGTCAAGGGAAACAAATTATGAATAC 57.078 29.630 0.00 0.00 32.69 1.89
9043 18574 7.209475 ACACTTGTCAAGGGAAACAAATTATG 58.791 34.615 21.80 5.74 35.13 1.90
9044 18575 7.360113 ACACTTGTCAAGGGAAACAAATTAT 57.640 32.000 21.80 0.00 35.13 1.28
9045 18576 6.783708 ACACTTGTCAAGGGAAACAAATTA 57.216 33.333 21.80 0.00 35.13 1.40
9046 18577 5.675684 ACACTTGTCAAGGGAAACAAATT 57.324 34.783 21.80 0.00 35.13 1.82
9047 18578 5.891551 ACTACACTTGTCAAGGGAAACAAAT 59.108 36.000 21.80 0.00 35.13 2.32
9050 18581 4.497291 ACTACACTTGTCAAGGGAAACA 57.503 40.909 21.80 2.91 35.35 2.83
9051 18582 6.935208 AGATTACTACACTTGTCAAGGGAAAC 59.065 38.462 21.80 4.25 35.35 2.78
9052 18583 7.074653 AGATTACTACACTTGTCAAGGGAAA 57.925 36.000 21.80 9.83 35.35 3.13
9054 18585 6.497259 AGAAGATTACTACACTTGTCAAGGGA 59.503 38.462 21.80 4.00 35.35 4.20
9055 18586 6.702329 AGAAGATTACTACACTTGTCAAGGG 58.298 40.000 13.50 13.50 38.11 3.95
9056 18587 8.608844 AAAGAAGATTACTACACTTGTCAAGG 57.391 34.615 16.85 8.26 0.00 3.61
9057 18588 9.261180 TGAAAGAAGATTACTACACTTGTCAAG 57.739 33.333 11.17 11.17 0.00 3.02
9059 18590 9.261180 CTTGAAAGAAGATTACTACACTTGTCA 57.739 33.333 0.00 0.00 0.00 3.58
9060 18591 9.477484 TCTTGAAAGAAGATTACTACACTTGTC 57.523 33.333 0.00 0.00 30.73 3.18
9061 18592 9.832445 TTCTTGAAAGAAGATTACTACACTTGT 57.168 29.630 1.31 0.00 39.95 3.16
9068 18599 9.337396 TGCAGTTTTCTTGAAAGAAGATTACTA 57.663 29.630 5.68 0.00 45.01 1.82
9070 18601 8.856490 TTGCAGTTTTCTTGAAAGAAGATTAC 57.144 30.769 5.68 4.28 45.01 1.89
9072 18603 8.953368 ATTTGCAGTTTTCTTGAAAGAAGATT 57.047 26.923 5.68 0.00 45.01 2.40
9073 18604 8.419442 AGATTTGCAGTTTTCTTGAAAGAAGAT 58.581 29.630 5.68 0.00 45.01 2.40
9075 18606 7.998753 AGATTTGCAGTTTTCTTGAAAGAAG 57.001 32.000 5.68 0.00 45.01 2.85
9076 18607 7.492344 GGAAGATTTGCAGTTTTCTTGAAAGAA 59.508 33.333 1.31 1.31 42.91 2.52
9077 18608 6.980397 GGAAGATTTGCAGTTTTCTTGAAAGA 59.020 34.615 7.10 0.00 0.00 2.52
9078 18609 6.074676 CGGAAGATTTGCAGTTTTCTTGAAAG 60.075 38.462 7.10 0.00 0.00 2.62
9079 18610 5.748152 CGGAAGATTTGCAGTTTTCTTGAAA 59.252 36.000 7.10 0.00 0.00 2.69
9083 18614 5.514274 TTCGGAAGATTTGCAGTTTTCTT 57.486 34.783 3.18 3.18 41.60 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.