Multiple sequence alignment - TraesCS5D01G501600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G501600 chr5D 100.000 3818 0 0 1 3818 529524415 529528232 0.000000e+00 7051.0
1 TraesCS5D01G501600 chr5D 87.584 298 20 5 1 283 553632661 553632366 2.840000e-86 329.0
2 TraesCS5D01G501600 chr5D 83.803 284 31 9 1 281 319427657 319427928 4.890000e-64 255.0
3 TraesCS5D01G501600 chr5B 93.993 2447 100 16 648 3073 668460944 668463364 0.000000e+00 3661.0
4 TraesCS5D01G501600 chr5B 84.472 161 15 3 3073 3225 377348219 377348377 2.380000e-32 150.0
5 TraesCS5D01G501600 chr5A 91.988 2434 151 13 667 3073 657537222 657539638 0.000000e+00 3374.0
6 TraesCS5D01G501600 chr5A 84.564 298 29 13 1 286 634468936 634469228 2.900000e-71 279.0
7 TraesCS5D01G501600 chr5A 84.354 294 29 12 1 283 631062583 631062296 4.860000e-69 272.0
8 TraesCS5D01G501600 chr5A 83.446 296 22 11 1 281 126266918 126267201 2.280000e-62 250.0
9 TraesCS5D01G501600 chr2A 79.990 1959 309 63 995 2909 100538367 100540286 0.000000e+00 1369.0
10 TraesCS5D01G501600 chr2A 83.042 572 67 23 1024 1569 100656955 100656388 3.430000e-135 492.0
11 TraesCS5D01G501600 chr2A 81.848 606 77 23 995 1569 100633162 100632559 2.670000e-131 479.0
12 TraesCS5D01G501600 chr2A 84.192 291 33 8 1 281 107404757 107404470 1.750000e-68 270.0
13 TraesCS5D01G501600 chr2B 79.848 1970 313 67 988 2909 152472310 152474243 0.000000e+00 1362.0
14 TraesCS5D01G501600 chr2B 82.862 566 67 23 1025 1569 152610651 152610095 7.420000e-132 481.0
15 TraesCS5D01G501600 chr2B 90.417 240 23 0 1330 1569 152570482 152570243 2.210000e-82 316.0
16 TraesCS5D01G501600 chr2B 76.803 513 102 10 2081 2583 152504422 152504927 4.860000e-69 272.0
17 TraesCS5D01G501600 chr2B 86.066 244 32 2 281 522 748543686 748543443 1.050000e-65 261.0
18 TraesCS5D01G501600 chr2D 79.529 1954 317 62 988 2896 101365126 101363211 0.000000e+00 1315.0
19 TraesCS5D01G501600 chr2D 81.697 601 77 18 997 1565 100784272 100783673 1.610000e-128 470.0
20 TraesCS5D01G501600 chr2D 81.322 605 83 20 988 1569 100955003 100954406 7.470000e-127 464.0
21 TraesCS5D01G501600 chr2D 82.187 567 68 24 1022 1565 100420405 100420961 1.250000e-124 457.0
22 TraesCS5D01G501600 chr2D 87.797 295 20 4 1 281 650771490 650771198 7.910000e-87 331.0
23 TraesCS5D01G501600 chr2D 87.542 297 20 4 1 281 86524960 86525255 1.020000e-85 327.0
24 TraesCS5D01G501600 chr2D 86.869 297 22 5 1 283 7276291 7276584 2.210000e-82 316.0
25 TraesCS5D01G501600 chr2D 87.866 239 21 6 1335 1572 101379849 101379618 1.350000e-69 274.0
26 TraesCS5D01G501600 chr2D 87.149 249 16 4 3 237 533090506 533090260 6.290000e-68 268.0
27 TraesCS5D01G501600 chr3D 96.796 749 24 0 3070 3818 29684394 29685142 0.000000e+00 1251.0
28 TraesCS5D01G501600 chr3D 96.515 746 26 0 3073 3818 610720929 610721674 0.000000e+00 1234.0
29 TraesCS5D01G501600 chr7D 96.783 746 23 1 3073 3818 595966225 595966969 0.000000e+00 1243.0
30 TraesCS5D01G501600 chr7D 88.095 294 21 8 1 281 373243536 373243828 1.700000e-88 337.0
31 TraesCS5D01G501600 chr7D 85.714 161 14 2 3073 3224 215151471 215151631 1.100000e-35 161.0
32 TraesCS5D01G501600 chr6A 96.649 746 25 0 3073 3818 53445804 53446549 0.000000e+00 1240.0
33 TraesCS5D01G501600 chr6A 86.047 301 23 7 1 287 473578739 473579034 4.790000e-79 305.0
34 TraesCS5D01G501600 chr4A 81.146 541 89 11 1024 1559 714270705 714271237 4.560000e-114 422.0
35 TraesCS5D01G501600 chr4B 88.604 351 33 4 3470 3817 54631192 54631538 1.640000e-113 420.0
36 TraesCS5D01G501600 chr4B 85.646 209 22 4 3239 3447 54573410 54573610 2.990000e-51 213.0
37 TraesCS5D01G501600 chr4B 81.443 97 8 3 3721 3817 54322155 54322069 1.900000e-08 71.3
38 TraesCS5D01G501600 chr1D 88.255 298 18 5 1 283 457067752 457067457 1.310000e-89 340.0
39 TraesCS5D01G501600 chr1D 88.406 207 20 4 79 283 470417952 470418156 2.950000e-61 246.0
40 TraesCS5D01G501600 chr1D 83.838 99 14 1 3239 3335 486991103 486991201 4.060000e-15 93.5
41 TraesCS5D01G501600 chr1A 87.857 280 28 4 3452 3726 536940599 536940877 1.320000e-84 324.0
42 TraesCS5D01G501600 chr1A 85.830 247 33 2 281 526 491389671 491389426 1.050000e-65 261.0
43 TraesCS5D01G501600 chr1A 90.909 88 8 0 3073 3160 536939859 536939946 6.700000e-23 119.0
44 TraesCS5D01G501600 chr1A 89.024 82 9 0 3079 3160 536896149 536896230 6.750000e-18 102.0
45 TraesCS5D01G501600 chr6D 85.859 297 27 3 1 283 472502964 472502669 6.200000e-78 302.0
46 TraesCS5D01G501600 chr6D 79.720 286 35 13 1 284 141278676 141278412 6.510000e-43 185.0
47 TraesCS5D01G501600 chr6D 86.986 146 15 3 3073 3218 469694509 469694650 1.100000e-35 161.0
48 TraesCS5D01G501600 chr3A 80.863 371 50 11 3377 3728 380914201 380913833 4.860000e-69 272.0
49 TraesCS5D01G501600 chr3A 86.831 243 29 3 281 521 611949859 611950100 6.290000e-68 268.0
50 TraesCS5D01G501600 chr3B 86.290 248 30 3 281 524 472627563 472627810 2.260000e-67 267.0
51 TraesCS5D01G501600 chr1B 83.258 221 28 4 3239 3451 435368123 435367904 1.080000e-45 195.0
52 TraesCS5D01G501600 chr1B 80.808 99 17 1 3239 3335 678171480 678171578 4.090000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G501600 chr5D 529524415 529528232 3817 False 7051.0 7051 100.000 1 3818 1 chr5D.!!$F2 3817
1 TraesCS5D01G501600 chr5B 668460944 668463364 2420 False 3661.0 3661 93.993 648 3073 1 chr5B.!!$F2 2425
2 TraesCS5D01G501600 chr5A 657537222 657539638 2416 False 3374.0 3374 91.988 667 3073 1 chr5A.!!$F3 2406
3 TraesCS5D01G501600 chr2A 100538367 100540286 1919 False 1369.0 1369 79.990 995 2909 1 chr2A.!!$F1 1914
4 TraesCS5D01G501600 chr2A 100656388 100656955 567 True 492.0 492 83.042 1024 1569 1 chr2A.!!$R2 545
5 TraesCS5D01G501600 chr2A 100632559 100633162 603 True 479.0 479 81.848 995 1569 1 chr2A.!!$R1 574
6 TraesCS5D01G501600 chr2B 152472310 152474243 1933 False 1362.0 1362 79.848 988 2909 1 chr2B.!!$F1 1921
7 TraesCS5D01G501600 chr2B 152610095 152610651 556 True 481.0 481 82.862 1025 1569 1 chr2B.!!$R2 544
8 TraesCS5D01G501600 chr2B 152504422 152504927 505 False 272.0 272 76.803 2081 2583 1 chr2B.!!$F2 502
9 TraesCS5D01G501600 chr2D 101363211 101365126 1915 True 1315.0 1315 79.529 988 2896 1 chr2D.!!$R3 1908
10 TraesCS5D01G501600 chr2D 100783673 100784272 599 True 470.0 470 81.697 997 1565 1 chr2D.!!$R1 568
11 TraesCS5D01G501600 chr2D 100954406 100955003 597 True 464.0 464 81.322 988 1569 1 chr2D.!!$R2 581
12 TraesCS5D01G501600 chr2D 100420405 100420961 556 False 457.0 457 82.187 1022 1565 1 chr2D.!!$F3 543
13 TraesCS5D01G501600 chr3D 29684394 29685142 748 False 1251.0 1251 96.796 3070 3818 1 chr3D.!!$F1 748
14 TraesCS5D01G501600 chr3D 610720929 610721674 745 False 1234.0 1234 96.515 3073 3818 1 chr3D.!!$F2 745
15 TraesCS5D01G501600 chr7D 595966225 595966969 744 False 1243.0 1243 96.783 3073 3818 1 chr7D.!!$F3 745
16 TraesCS5D01G501600 chr6A 53445804 53446549 745 False 1240.0 1240 96.649 3073 3818 1 chr6A.!!$F1 745
17 TraesCS5D01G501600 chr4A 714270705 714271237 532 False 422.0 422 81.146 1024 1559 1 chr4A.!!$F1 535
18 TraesCS5D01G501600 chr1A 536939859 536940877 1018 False 221.5 324 89.383 3073 3726 2 chr1A.!!$F2 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 540 0.032813 AACTTAGGATCCCCGGTCGA 60.033 55.0 8.55 0.0 37.58 4.20 F
585 586 0.250727 TAACACAGCCTTCCACCAGC 60.251 55.0 0.00 0.0 0.00 4.85 F
642 643 0.320683 CATCCTCGCAAGGTGTGTGA 60.321 55.0 0.00 0.0 44.57 3.58 F
1599 1710 0.379316 CACGATCGACGGGTGTCATA 59.621 55.0 24.34 0.0 45.80 2.15 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1682 0.797249 CCGTCGATCGTGTGTTCCTC 60.797 60.000 15.94 0.0 37.94 3.71 R
2286 2471 1.180029 GCCATTCTGGATGTGTGCTT 58.820 50.000 0.00 0.0 40.96 3.91 R
2310 2495 1.377994 CACCTCTGCCCTGAGCTTT 59.622 57.895 0.00 0.0 44.23 3.51 R
3036 3230 0.245539 CATTGTCAGCAAGCCCAAGG 59.754 55.000 0.00 0.0 38.10 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.477975 GGCAGCGCGTCGTCTAGT 62.478 66.667 8.43 0.00 0.00 2.57
29 30 2.504244 GCAGCGCGTCGTCTAGTT 60.504 61.111 8.43 0.00 0.00 2.24
30 31 2.087009 GCAGCGCGTCGTCTAGTTT 61.087 57.895 8.43 0.00 0.00 2.66
31 32 1.615107 GCAGCGCGTCGTCTAGTTTT 61.615 55.000 8.43 0.00 0.00 2.43
32 33 0.782384 CAGCGCGTCGTCTAGTTTTT 59.218 50.000 8.43 0.00 0.00 1.94
33 34 1.980844 CAGCGCGTCGTCTAGTTTTTA 59.019 47.619 8.43 0.00 0.00 1.52
34 35 2.026507 CAGCGCGTCGTCTAGTTTTTAG 59.973 50.000 8.43 0.00 0.00 1.85
35 36 1.981533 GCGCGTCGTCTAGTTTTTAGT 59.018 47.619 8.43 0.00 0.00 2.24
36 37 2.406357 GCGCGTCGTCTAGTTTTTAGTT 59.594 45.455 8.43 0.00 0.00 2.24
37 38 3.121227 GCGCGTCGTCTAGTTTTTAGTTT 60.121 43.478 8.43 0.00 0.00 2.66
38 39 4.606894 GCGCGTCGTCTAGTTTTTAGTTTT 60.607 41.667 8.43 0.00 0.00 2.43
39 40 5.387342 GCGCGTCGTCTAGTTTTTAGTTTTA 60.387 40.000 8.43 0.00 0.00 1.52
40 41 6.668325 GCGCGTCGTCTAGTTTTTAGTTTTAT 60.668 38.462 8.43 0.00 0.00 1.40
41 42 7.222654 CGCGTCGTCTAGTTTTTAGTTTTATT 58.777 34.615 0.00 0.00 0.00 1.40
42 43 8.365210 CGCGTCGTCTAGTTTTTAGTTTTATTA 58.635 33.333 0.00 0.00 0.00 0.98
70 71 9.006215 GTTAATTAATGTAATGTGGACTTTCGC 57.994 33.333 0.31 0.00 0.00 4.70
71 72 5.554822 TTAATGTAATGTGGACTTTCGCC 57.445 39.130 0.00 0.00 0.00 5.54
72 73 1.434555 TGTAATGTGGACTTTCGCCG 58.565 50.000 0.00 0.00 0.00 6.46
73 74 0.725117 GTAATGTGGACTTTCGCCGG 59.275 55.000 0.00 0.00 0.00 6.13
74 75 1.022451 TAATGTGGACTTTCGCCGGC 61.022 55.000 19.07 19.07 0.00 6.13
75 76 2.748058 AATGTGGACTTTCGCCGGCT 62.748 55.000 26.68 4.40 0.00 5.52
76 77 2.668550 GTGGACTTTCGCCGGCTT 60.669 61.111 26.68 2.59 0.00 4.35
77 78 2.112297 TGGACTTTCGCCGGCTTT 59.888 55.556 26.68 3.00 0.00 3.51
78 79 1.527380 TGGACTTTCGCCGGCTTTT 60.527 52.632 26.68 3.43 0.00 2.27
79 80 0.250381 TGGACTTTCGCCGGCTTTTA 60.250 50.000 26.68 3.97 0.00 1.52
80 81 1.092348 GGACTTTCGCCGGCTTTTAT 58.908 50.000 26.68 7.01 0.00 1.40
81 82 1.202143 GGACTTTCGCCGGCTTTTATG 60.202 52.381 26.68 7.77 0.00 1.90
82 83 1.467342 GACTTTCGCCGGCTTTTATGT 59.533 47.619 26.68 15.07 0.00 2.29
83 84 1.883926 ACTTTCGCCGGCTTTTATGTT 59.116 42.857 26.68 0.00 0.00 2.71
84 85 2.295070 ACTTTCGCCGGCTTTTATGTTT 59.705 40.909 26.68 0.00 0.00 2.83
85 86 3.502979 ACTTTCGCCGGCTTTTATGTTTA 59.497 39.130 26.68 0.00 0.00 2.01
86 87 4.023021 ACTTTCGCCGGCTTTTATGTTTAA 60.023 37.500 26.68 3.67 0.00 1.52
87 88 4.705337 TTCGCCGGCTTTTATGTTTAAT 57.295 36.364 26.68 0.00 0.00 1.40
88 89 4.705337 TCGCCGGCTTTTATGTTTAATT 57.295 36.364 26.68 0.00 0.00 1.40
89 90 5.814764 TCGCCGGCTTTTATGTTTAATTA 57.185 34.783 26.68 0.00 0.00 1.40
90 91 6.192234 TCGCCGGCTTTTATGTTTAATTAA 57.808 33.333 26.68 0.00 0.00 1.40
91 92 6.618811 TCGCCGGCTTTTATGTTTAATTAAA 58.381 32.000 26.68 6.54 0.00 1.52
92 93 7.259161 TCGCCGGCTTTTATGTTTAATTAAAT 58.741 30.769 26.68 1.99 0.00 1.40
93 94 7.221067 TCGCCGGCTTTTATGTTTAATTAAATG 59.779 33.333 26.68 0.65 0.00 2.32
94 95 7.123190 GCCGGCTTTTATGTTTAATTAAATGC 58.877 34.615 22.15 6.26 37.56 3.56
95 96 7.201565 GCCGGCTTTTATGTTTAATTAAATGCA 60.202 33.333 22.15 8.51 38.87 3.96
96 97 8.825745 CCGGCTTTTATGTTTAATTAAATGCAT 58.174 29.630 13.54 14.28 38.87 3.96
97 98 9.635632 CGGCTTTTATGTTTAATTAAATGCATG 57.364 29.630 13.54 3.94 38.87 4.06
137 138 7.722795 TGCTTTCAAACTTTTTATTTAGGGC 57.277 32.000 0.00 0.00 0.00 5.19
138 139 6.422400 TGCTTTCAAACTTTTTATTTAGGGCG 59.578 34.615 0.00 0.00 0.00 6.13
139 140 6.617741 GCTTTCAAACTTTTTATTTAGGGCGC 60.618 38.462 0.00 0.00 0.00 6.53
140 141 4.811908 TCAAACTTTTTATTTAGGGCGCC 58.188 39.130 21.18 21.18 0.00 6.53
141 142 3.497297 AACTTTTTATTTAGGGCGCCG 57.503 42.857 22.54 3.93 0.00 6.46
142 143 2.713877 ACTTTTTATTTAGGGCGCCGA 58.286 42.857 22.54 8.19 0.00 5.54
143 144 2.421073 ACTTTTTATTTAGGGCGCCGAC 59.579 45.455 22.54 7.61 0.00 4.79
144 145 2.110901 TTTTATTTAGGGCGCCGACA 57.889 45.000 22.54 4.47 0.00 4.35
145 146 2.110901 TTTATTTAGGGCGCCGACAA 57.889 45.000 22.54 12.93 0.00 3.18
146 147 2.110901 TTATTTAGGGCGCCGACAAA 57.889 45.000 22.54 19.53 0.00 2.83
147 148 2.110901 TATTTAGGGCGCCGACAAAA 57.889 45.000 22.54 17.32 0.00 2.44
148 149 1.470051 ATTTAGGGCGCCGACAAAAT 58.530 45.000 22.54 18.73 0.00 1.82
149 150 0.523966 TTTAGGGCGCCGACAAAATG 59.476 50.000 22.54 0.00 0.00 2.32
150 151 1.309499 TTAGGGCGCCGACAAAATGG 61.309 55.000 22.54 0.00 0.00 3.16
151 152 4.128388 GGGCGCCGACAAAATGGG 62.128 66.667 22.54 0.00 0.00 4.00
152 153 3.370231 GGCGCCGACAAAATGGGT 61.370 61.111 12.58 0.00 0.00 4.51
153 154 2.178273 GCGCCGACAAAATGGGTC 59.822 61.111 0.00 0.00 0.00 4.46
159 160 3.332706 GACAAAATGGGTCGGACCA 57.667 52.632 27.32 14.49 46.24 4.02
160 161 1.165270 GACAAAATGGGTCGGACCAG 58.835 55.000 27.32 12.17 45.20 4.00
161 162 0.893727 ACAAAATGGGTCGGACCAGC 60.894 55.000 27.32 12.47 45.20 4.85
162 163 1.674322 AAAATGGGTCGGACCAGCG 60.674 57.895 27.32 0.00 45.20 5.18
163 164 2.406002 AAAATGGGTCGGACCAGCGT 62.406 55.000 27.32 10.56 45.20 5.07
164 165 2.406002 AAATGGGTCGGACCAGCGTT 62.406 55.000 27.32 15.60 45.20 4.84
165 166 3.605749 ATGGGTCGGACCAGCGTTG 62.606 63.158 27.32 0.00 45.20 4.10
186 187 2.813908 GCTCGCGTCGACCCAAAT 60.814 61.111 10.58 0.00 0.00 2.32
187 188 1.517694 GCTCGCGTCGACCCAAATA 60.518 57.895 10.58 0.00 0.00 1.40
188 189 1.749609 GCTCGCGTCGACCCAAATAC 61.750 60.000 10.58 0.00 0.00 1.89
189 190 0.457166 CTCGCGTCGACCCAAATACA 60.457 55.000 10.58 0.00 0.00 2.29
190 191 0.457166 TCGCGTCGACCCAAATACAG 60.457 55.000 10.58 0.00 0.00 2.74
191 192 1.713830 GCGTCGACCCAAATACAGC 59.286 57.895 10.58 0.00 0.00 4.40
192 193 1.995991 CGTCGACCCAAATACAGCG 59.004 57.895 10.58 0.00 0.00 5.18
193 194 1.713830 GTCGACCCAAATACAGCGC 59.286 57.895 3.51 0.00 0.00 5.92
194 195 1.448893 TCGACCCAAATACAGCGCC 60.449 57.895 2.29 0.00 0.00 6.53
195 196 2.808958 CGACCCAAATACAGCGCCG 61.809 63.158 2.29 0.00 0.00 6.46
196 197 2.437716 ACCCAAATACAGCGCCGG 60.438 61.111 2.29 0.00 0.00 6.13
197 198 3.887868 CCCAAATACAGCGCCGGC 61.888 66.667 19.07 19.07 40.37 6.13
198 199 4.236416 CCAAATACAGCGCCGGCG 62.236 66.667 43.13 43.13 46.35 6.46
199 200 3.496131 CAAATACAGCGCCGGCGT 61.496 61.111 45.02 30.67 46.35 5.68
200 201 2.744709 AAATACAGCGCCGGCGTT 60.745 55.556 45.02 39.72 46.35 4.84
201 202 2.329614 AAATACAGCGCCGGCGTTT 61.330 52.632 45.02 33.76 46.35 3.60
202 203 2.521733 AAATACAGCGCCGGCGTTTG 62.522 55.000 45.02 40.22 46.35 2.93
203 204 4.973055 TACAGCGCCGGCGTTTGT 62.973 61.111 41.07 41.07 46.35 2.83
223 224 4.367023 CCGCCGGACCGACTCAAA 62.367 66.667 17.49 0.00 0.00 2.69
224 225 3.110178 CGCCGGACCGACTCAAAC 61.110 66.667 17.49 0.00 0.00 2.93
225 226 3.110178 GCCGGACCGACTCAAACG 61.110 66.667 17.49 0.00 0.00 3.60
235 236 2.372350 CGACTCAAACGGACAAAAAGC 58.628 47.619 0.00 0.00 0.00 3.51
236 237 2.372350 GACTCAAACGGACAAAAAGCG 58.628 47.619 0.00 0.00 0.00 4.68
237 238 1.064952 ACTCAAACGGACAAAAAGCGG 59.935 47.619 0.00 0.00 0.00 5.52
238 239 1.332375 CTCAAACGGACAAAAAGCGGA 59.668 47.619 0.00 0.00 0.00 5.54
239 240 1.064357 TCAAACGGACAAAAAGCGGAC 59.936 47.619 0.00 0.00 0.00 4.79
240 241 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
241 242 1.096416 AACGGACAAAAAGCGGACAA 58.904 45.000 0.00 0.00 0.00 3.18
242 243 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
243 244 1.473278 ACGGACAAAAAGCGGACAAAA 59.527 42.857 0.00 0.00 0.00 2.44
244 245 2.094649 ACGGACAAAAAGCGGACAAAAA 60.095 40.909 0.00 0.00 0.00 1.94
245 246 2.280445 CGGACAAAAAGCGGACAAAAAC 59.720 45.455 0.00 0.00 0.00 2.43
246 247 3.254892 GGACAAAAAGCGGACAAAAACA 58.745 40.909 0.00 0.00 0.00 2.83
247 248 3.061563 GGACAAAAAGCGGACAAAAACAC 59.938 43.478 0.00 0.00 0.00 3.32
248 249 2.997303 ACAAAAAGCGGACAAAAACACC 59.003 40.909 0.00 0.00 0.00 4.16
250 251 0.812549 AAAGCGGACAAAAACACCGT 59.187 45.000 0.00 0.00 46.95 4.83
251 252 0.379316 AAGCGGACAAAAACACCGTC 59.621 50.000 0.00 0.00 46.95 4.79
252 253 1.009335 GCGGACAAAAACACCGTCC 60.009 57.895 0.00 0.00 46.95 4.79
254 255 2.396700 GGACAAAAACACCGTCCGT 58.603 52.632 0.00 0.00 39.86 4.69
255 256 0.734309 GGACAAAAACACCGTCCGTT 59.266 50.000 0.00 0.00 39.86 4.44
256 257 1.132834 GGACAAAAACACCGTCCGTTT 59.867 47.619 0.00 0.00 39.86 3.60
257 258 2.178783 GACAAAAACACCGTCCGTTTG 58.821 47.619 0.00 0.00 36.71 2.93
258 259 1.135344 ACAAAAACACCGTCCGTTTGG 60.135 47.619 0.00 0.00 36.71 3.28
259 260 0.456628 AAAAACACCGTCCGTTTGGG 59.543 50.000 0.00 0.00 36.71 4.12
260 261 2.007113 AAAACACCGTCCGTTTGGGC 62.007 55.000 0.00 0.00 36.71 5.36
261 262 4.941309 ACACCGTCCGTTTGGGCC 62.941 66.667 0.00 0.00 36.06 5.80
275 276 4.324991 GGCCGACCCGTTGGAGTT 62.325 66.667 5.22 0.00 36.15 3.01
276 277 3.047877 GCCGACCCGTTGGAGTTG 61.048 66.667 5.22 0.00 36.15 3.16
277 278 3.047877 CCGACCCGTTGGAGTTGC 61.048 66.667 0.00 0.00 36.15 4.17
278 279 2.030562 CGACCCGTTGGAGTTGCT 59.969 61.111 0.00 0.00 34.81 3.91
279 280 2.027625 CGACCCGTTGGAGTTGCTC 61.028 63.158 0.00 0.00 34.81 4.26
280 281 1.371558 GACCCGTTGGAGTTGCTCT 59.628 57.895 0.00 0.00 34.81 4.09
281 282 0.250338 GACCCGTTGGAGTTGCTCTT 60.250 55.000 0.00 0.00 34.81 2.85
282 283 1.001633 GACCCGTTGGAGTTGCTCTTA 59.998 52.381 0.00 0.00 34.81 2.10
283 284 1.628846 ACCCGTTGGAGTTGCTCTTAT 59.371 47.619 0.00 0.00 34.81 1.73
284 285 2.280628 CCCGTTGGAGTTGCTCTTATC 58.719 52.381 0.00 0.00 0.00 1.75
285 286 2.354704 CCCGTTGGAGTTGCTCTTATCA 60.355 50.000 0.00 0.00 0.00 2.15
286 287 2.932614 CCGTTGGAGTTGCTCTTATCAG 59.067 50.000 0.00 0.00 0.00 2.90
287 288 2.349886 CGTTGGAGTTGCTCTTATCAGC 59.650 50.000 0.00 0.00 40.13 4.26
288 289 3.604582 GTTGGAGTTGCTCTTATCAGCT 58.395 45.455 0.00 0.00 40.39 4.24
289 290 4.678044 CGTTGGAGTTGCTCTTATCAGCTA 60.678 45.833 0.00 0.00 40.39 3.32
290 291 5.363939 GTTGGAGTTGCTCTTATCAGCTAT 58.636 41.667 0.00 0.00 40.39 2.97
291 292 5.207110 TGGAGTTGCTCTTATCAGCTATC 57.793 43.478 0.00 0.00 40.39 2.08
292 293 4.233789 GGAGTTGCTCTTATCAGCTATCG 58.766 47.826 0.00 0.00 40.39 2.92
293 294 4.233789 GAGTTGCTCTTATCAGCTATCGG 58.766 47.826 0.00 0.00 40.39 4.18
294 295 3.891977 AGTTGCTCTTATCAGCTATCGGA 59.108 43.478 0.00 0.00 40.39 4.55
295 296 3.924918 TGCTCTTATCAGCTATCGGAC 57.075 47.619 0.00 0.00 40.39 4.79
296 297 3.222603 TGCTCTTATCAGCTATCGGACA 58.777 45.455 0.00 0.00 40.39 4.02
297 298 3.636764 TGCTCTTATCAGCTATCGGACAA 59.363 43.478 0.00 0.00 40.39 3.18
298 299 4.233789 GCTCTTATCAGCTATCGGACAAG 58.766 47.826 0.00 0.00 36.38 3.16
299 300 4.261825 GCTCTTATCAGCTATCGGACAAGT 60.262 45.833 0.00 0.00 36.38 3.16
300 301 5.737635 GCTCTTATCAGCTATCGGACAAGTT 60.738 44.000 0.00 0.00 36.38 2.66
301 302 5.592054 TCTTATCAGCTATCGGACAAGTTG 58.408 41.667 0.00 0.00 0.00 3.16
302 303 3.895232 ATCAGCTATCGGACAAGTTGT 57.105 42.857 8.61 8.61 0.00 3.32
303 304 6.320418 TCTTATCAGCTATCGGACAAGTTGTA 59.680 38.462 8.88 0.00 0.00 2.41
304 305 4.371855 TCAGCTATCGGACAAGTTGTAG 57.628 45.455 8.88 6.56 0.00 2.74
305 306 4.014406 TCAGCTATCGGACAAGTTGTAGA 58.986 43.478 8.88 11.91 0.00 2.59
306 307 4.106197 CAGCTATCGGACAAGTTGTAGAC 58.894 47.826 8.88 1.71 0.00 2.59
307 308 3.106672 GCTATCGGACAAGTTGTAGACG 58.893 50.000 8.88 13.75 0.00 4.18
308 309 3.181503 GCTATCGGACAAGTTGTAGACGA 60.182 47.826 23.34 23.34 36.23 4.20
309 310 3.928727 ATCGGACAAGTTGTAGACGAA 57.071 42.857 24.29 13.68 35.72 3.85
310 311 3.278367 TCGGACAAGTTGTAGACGAAG 57.722 47.619 20.64 5.42 31.51 3.79
325 326 2.571212 ACGAAGTGAAAGCAATGGTCA 58.429 42.857 0.00 0.00 42.51 4.02
326 327 2.948979 ACGAAGTGAAAGCAATGGTCAA 59.051 40.909 0.00 0.00 42.51 3.18
327 328 3.380004 ACGAAGTGAAAGCAATGGTCAAA 59.620 39.130 0.00 0.00 42.51 2.69
328 329 4.142271 ACGAAGTGAAAGCAATGGTCAAAA 60.142 37.500 0.00 0.00 42.51 2.44
329 330 4.207019 CGAAGTGAAAGCAATGGTCAAAAC 59.793 41.667 0.00 0.00 0.00 2.43
330 331 3.705604 AGTGAAAGCAATGGTCAAAACG 58.294 40.909 0.00 0.00 0.00 3.60
331 332 2.218530 GTGAAAGCAATGGTCAAAACGC 59.781 45.455 0.00 0.00 0.00 4.84
332 333 2.100584 TGAAAGCAATGGTCAAAACGCT 59.899 40.909 0.00 0.00 0.00 5.07
333 334 2.888834 AAGCAATGGTCAAAACGCTT 57.111 40.000 0.00 0.00 35.00 4.68
334 335 2.138596 AGCAATGGTCAAAACGCTTG 57.861 45.000 0.00 0.00 0.00 4.01
335 336 1.139163 GCAATGGTCAAAACGCTTGG 58.861 50.000 0.00 0.00 0.00 3.61
336 337 1.139163 CAATGGTCAAAACGCTTGGC 58.861 50.000 0.00 0.00 0.00 4.52
347 348 3.583383 GCTTGGCGAGTGCAAGAT 58.417 55.556 3.19 0.00 45.35 2.40
348 349 1.427020 GCTTGGCGAGTGCAAGATC 59.573 57.895 3.19 0.00 45.35 2.75
349 350 1.300971 GCTTGGCGAGTGCAAGATCA 61.301 55.000 3.19 0.00 45.35 2.92
350 351 0.445436 CTTGGCGAGTGCAAGATCAC 59.555 55.000 0.00 0.00 45.35 3.06
351 352 0.955428 TTGGCGAGTGCAAGATCACC 60.955 55.000 0.00 0.00 45.35 4.02
352 353 1.078848 GGCGAGTGCAAGATCACCT 60.079 57.895 0.00 0.00 45.35 4.00
353 354 1.364626 GGCGAGTGCAAGATCACCTG 61.365 60.000 0.00 0.00 45.35 4.00
354 355 1.364626 GCGAGTGCAAGATCACCTGG 61.365 60.000 0.00 0.00 42.15 4.45
355 356 0.742281 CGAGTGCAAGATCACCTGGG 60.742 60.000 0.00 0.00 37.68 4.45
356 357 0.326264 GAGTGCAAGATCACCTGGGT 59.674 55.000 0.00 0.00 37.68 4.51
357 358 0.037303 AGTGCAAGATCACCTGGGTG 59.963 55.000 13.12 13.12 46.64 4.61
366 367 2.452116 CACCTGGGTGAGGAGAACA 58.548 57.895 14.01 0.00 46.33 3.18
367 368 0.322975 CACCTGGGTGAGGAGAACAG 59.677 60.000 14.01 0.00 46.33 3.16
368 369 1.298014 CCTGGGTGAGGAGAACAGC 59.702 63.158 0.00 0.00 46.33 4.40
369 370 1.079543 CTGGGTGAGGAGAACAGCG 60.080 63.158 0.00 0.00 36.74 5.18
370 371 1.533033 TGGGTGAGGAGAACAGCGA 60.533 57.895 0.00 0.00 36.74 4.93
371 372 1.118965 TGGGTGAGGAGAACAGCGAA 61.119 55.000 0.00 0.00 36.74 4.70
372 373 0.250513 GGGTGAGGAGAACAGCGAAT 59.749 55.000 0.00 0.00 36.74 3.34
373 374 1.480954 GGGTGAGGAGAACAGCGAATA 59.519 52.381 0.00 0.00 36.74 1.75
374 375 2.541556 GGTGAGGAGAACAGCGAATAC 58.458 52.381 0.00 0.00 0.00 1.89
375 376 2.166664 GGTGAGGAGAACAGCGAATACT 59.833 50.000 0.00 0.00 0.00 2.12
376 377 3.182967 GTGAGGAGAACAGCGAATACTG 58.817 50.000 0.00 0.00 43.59 2.74
377 378 2.197577 GAGGAGAACAGCGAATACTGC 58.802 52.381 0.00 0.00 41.60 4.40
378 379 1.827969 AGGAGAACAGCGAATACTGCT 59.172 47.619 0.00 0.00 45.31 4.24
383 384 2.989639 AGCGAATACTGCTGCCCA 59.010 55.556 0.00 0.00 42.14 5.36
384 385 1.528824 AGCGAATACTGCTGCCCAT 59.471 52.632 0.00 0.00 42.14 4.00
385 386 0.816825 AGCGAATACTGCTGCCCATG 60.817 55.000 0.00 0.00 42.14 3.66
386 387 0.815213 GCGAATACTGCTGCCCATGA 60.815 55.000 0.00 0.00 0.00 3.07
387 388 1.224075 CGAATACTGCTGCCCATGAG 58.776 55.000 0.00 0.00 0.00 2.90
388 389 1.473965 CGAATACTGCTGCCCATGAGT 60.474 52.381 0.00 0.00 0.00 3.41
389 390 2.648059 GAATACTGCTGCCCATGAGTT 58.352 47.619 0.00 0.00 0.00 3.01
390 391 2.048444 ATACTGCTGCCCATGAGTTG 57.952 50.000 0.00 0.00 0.00 3.16
391 392 0.035152 TACTGCTGCCCATGAGTTGG 60.035 55.000 0.00 0.00 46.00 3.77
392 393 2.677524 TGCTGCCCATGAGTTGGC 60.678 61.111 3.93 3.93 44.97 4.52
397 398 3.086733 GCCCATGAGTTGGCTAGAC 57.913 57.895 3.67 0.00 44.97 2.59
398 399 0.543749 GCCCATGAGTTGGCTAGACT 59.456 55.000 0.00 0.00 44.97 3.24
399 400 1.762957 GCCCATGAGTTGGCTAGACTA 59.237 52.381 0.00 0.00 44.97 2.59
400 401 2.224161 GCCCATGAGTTGGCTAGACTAG 60.224 54.545 5.03 5.03 44.97 2.57
401 402 2.366916 CCCATGAGTTGGCTAGACTAGG 59.633 54.545 11.48 0.00 44.97 3.02
402 403 3.300388 CCATGAGTTGGCTAGACTAGGA 58.700 50.000 11.48 0.00 39.09 2.94
403 404 3.706594 CCATGAGTTGGCTAGACTAGGAA 59.293 47.826 11.48 0.00 39.09 3.36
404 405 4.346418 CCATGAGTTGGCTAGACTAGGAAT 59.654 45.833 11.48 0.00 39.09 3.01
405 406 5.540337 CCATGAGTTGGCTAGACTAGGAATA 59.460 44.000 11.48 0.00 39.09 1.75
406 407 6.042093 CCATGAGTTGGCTAGACTAGGAATAA 59.958 42.308 11.48 0.00 39.09 1.40
407 408 6.716934 TGAGTTGGCTAGACTAGGAATAAG 57.283 41.667 11.48 0.00 0.00 1.73
408 409 6.195700 TGAGTTGGCTAGACTAGGAATAAGT 58.804 40.000 11.48 0.00 0.00 2.24
409 410 7.351952 TGAGTTGGCTAGACTAGGAATAAGTA 58.648 38.462 11.48 0.00 0.00 2.24
410 411 7.837689 TGAGTTGGCTAGACTAGGAATAAGTAA 59.162 37.037 11.48 0.00 0.00 2.24
411 412 8.785184 AGTTGGCTAGACTAGGAATAAGTAAT 57.215 34.615 11.48 0.00 0.00 1.89
412 413 9.878737 AGTTGGCTAGACTAGGAATAAGTAATA 57.121 33.333 11.48 0.00 0.00 0.98
415 416 9.742144 TGGCTAGACTAGGAATAAGTAATAGAG 57.258 37.037 11.48 0.00 0.00 2.43
416 417 8.680001 GGCTAGACTAGGAATAAGTAATAGAGC 58.320 40.741 11.48 0.00 0.00 4.09
417 418 9.457436 GCTAGACTAGGAATAAGTAATAGAGCT 57.543 37.037 11.48 0.00 0.00 4.09
420 421 9.005777 AGACTAGGAATAAGTAATAGAGCTTCG 57.994 37.037 0.00 0.00 0.00 3.79
421 422 8.694581 ACTAGGAATAAGTAATAGAGCTTCGT 57.305 34.615 0.00 0.00 0.00 3.85
422 423 9.134055 ACTAGGAATAAGTAATAGAGCTTCGTT 57.866 33.333 0.00 0.00 0.00 3.85
423 424 9.400638 CTAGGAATAAGTAATAGAGCTTCGTTG 57.599 37.037 0.00 0.00 0.00 4.10
424 425 6.702282 AGGAATAAGTAATAGAGCTTCGTTGC 59.298 38.462 0.00 0.00 0.00 4.17
426 427 7.224949 GGAATAAGTAATAGAGCTTCGTTGCTT 59.775 37.037 11.65 11.65 44.17 3.91
427 428 8.494016 AATAAGTAATAGAGCTTCGTTGCTTT 57.506 30.769 12.01 4.06 44.17 3.51
428 429 5.786401 AGTAATAGAGCTTCGTTGCTTTG 57.214 39.130 6.40 0.00 44.17 2.77
429 430 4.631813 AGTAATAGAGCTTCGTTGCTTTGG 59.368 41.667 6.40 0.00 44.17 3.28
430 431 1.808411 TAGAGCTTCGTTGCTTTGGG 58.192 50.000 6.40 0.00 44.17 4.12
431 432 0.108585 AGAGCTTCGTTGCTTTGGGA 59.891 50.000 6.40 0.00 44.17 4.37
432 433 0.238553 GAGCTTCGTTGCTTTGGGAC 59.761 55.000 6.40 0.00 44.17 4.46
433 434 0.179018 AGCTTCGTTGCTTTGGGACT 60.179 50.000 0.00 0.00 40.93 3.85
434 435 0.238553 GCTTCGTTGCTTTGGGACTC 59.761 55.000 0.00 0.00 0.00 3.36
435 436 1.593196 CTTCGTTGCTTTGGGACTCA 58.407 50.000 0.00 0.00 0.00 3.41
436 437 1.532868 CTTCGTTGCTTTGGGACTCAG 59.467 52.381 0.00 0.00 0.00 3.35
437 438 0.884704 TCGTTGCTTTGGGACTCAGC 60.885 55.000 0.00 0.00 35.19 4.26
438 439 0.886490 CGTTGCTTTGGGACTCAGCT 60.886 55.000 0.00 0.00 35.56 4.24
439 440 0.877743 GTTGCTTTGGGACTCAGCTC 59.122 55.000 0.00 0.00 35.56 4.09
440 441 0.250901 TTGCTTTGGGACTCAGCTCC 60.251 55.000 0.00 0.00 35.56 4.70
445 446 4.779733 GGGACTCAGCTCCCCCGA 62.780 72.222 0.00 0.00 44.12 5.14
446 447 2.444895 GGACTCAGCTCCCCCGAT 60.445 66.667 0.00 0.00 0.00 4.18
447 448 2.066999 GGACTCAGCTCCCCCGATT 61.067 63.158 0.00 0.00 0.00 3.34
448 449 1.144936 GACTCAGCTCCCCCGATTG 59.855 63.158 0.00 0.00 0.00 2.67
449 450 1.613630 ACTCAGCTCCCCCGATTGT 60.614 57.895 0.00 0.00 0.00 2.71
450 451 0.325296 ACTCAGCTCCCCCGATTGTA 60.325 55.000 0.00 0.00 0.00 2.41
451 452 1.051812 CTCAGCTCCCCCGATTGTAT 58.948 55.000 0.00 0.00 0.00 2.29
452 453 1.417890 CTCAGCTCCCCCGATTGTATT 59.582 52.381 0.00 0.00 0.00 1.89
453 454 1.416401 TCAGCTCCCCCGATTGTATTC 59.584 52.381 0.00 0.00 0.00 1.75
454 455 1.417890 CAGCTCCCCCGATTGTATTCT 59.582 52.381 0.00 0.00 0.00 2.40
455 456 2.632996 CAGCTCCCCCGATTGTATTCTA 59.367 50.000 0.00 0.00 0.00 2.10
456 457 3.071023 CAGCTCCCCCGATTGTATTCTAA 59.929 47.826 0.00 0.00 0.00 2.10
457 458 3.325135 AGCTCCCCCGATTGTATTCTAAG 59.675 47.826 0.00 0.00 0.00 2.18
458 459 3.071167 GCTCCCCCGATTGTATTCTAAGT 59.929 47.826 0.00 0.00 0.00 2.24
459 460 4.282703 GCTCCCCCGATTGTATTCTAAGTA 59.717 45.833 0.00 0.00 0.00 2.24
460 461 5.046520 GCTCCCCCGATTGTATTCTAAGTAT 60.047 44.000 0.00 0.00 0.00 2.12
461 462 6.520231 GCTCCCCCGATTGTATTCTAAGTATT 60.520 42.308 0.00 0.00 0.00 1.89
462 463 6.765403 TCCCCCGATTGTATTCTAAGTATTG 58.235 40.000 0.00 0.00 0.00 1.90
463 464 6.328148 TCCCCCGATTGTATTCTAAGTATTGT 59.672 38.462 0.00 0.00 0.00 2.71
464 465 6.996282 CCCCCGATTGTATTCTAAGTATTGTT 59.004 38.462 0.00 0.00 0.00 2.83
465 466 7.501225 CCCCCGATTGTATTCTAAGTATTGTTT 59.499 37.037 0.00 0.00 0.00 2.83
466 467 8.557029 CCCCGATTGTATTCTAAGTATTGTTTC 58.443 37.037 0.00 0.00 0.00 2.78
467 468 9.104965 CCCGATTGTATTCTAAGTATTGTTTCA 57.895 33.333 0.00 0.00 0.00 2.69
472 473 9.917129 TTGTATTCTAAGTATTGTTTCAGACGA 57.083 29.630 0.00 0.00 0.00 4.20
473 474 9.917129 TGTATTCTAAGTATTGTTTCAGACGAA 57.083 29.630 0.00 0.00 0.00 3.85
478 479 8.932791 TCTAAGTATTGTTTCAGACGAAATTCC 58.067 33.333 0.00 0.00 42.90 3.01
479 480 7.745620 AAGTATTGTTTCAGACGAAATTCCT 57.254 32.000 0.00 0.00 42.90 3.36
480 481 7.745620 AGTATTGTTTCAGACGAAATTCCTT 57.254 32.000 0.00 0.00 42.90 3.36
481 482 7.807680 AGTATTGTTTCAGACGAAATTCCTTC 58.192 34.615 0.00 0.00 42.90 3.46
501 502 9.985730 TTCCTTCGTTAGTTTAATAAAGTGAGA 57.014 29.630 3.49 0.00 0.00 3.27
502 503 9.985730 TCCTTCGTTAGTTTAATAAAGTGAGAA 57.014 29.630 3.49 5.57 0.00 2.87
506 507 9.970395 TCGTTAGTTTAATAAAGTGAGAAGTGA 57.030 29.630 3.49 0.00 0.00 3.41
537 538 3.361281 AAAAACTTAGGATCCCCGGTC 57.639 47.619 8.55 0.00 37.58 4.79
538 539 0.828677 AAACTTAGGATCCCCGGTCG 59.171 55.000 8.55 0.00 37.58 4.79
539 540 0.032813 AACTTAGGATCCCCGGTCGA 60.033 55.000 8.55 0.00 37.58 4.20
540 541 0.754587 ACTTAGGATCCCCGGTCGAC 60.755 60.000 8.55 7.13 37.58 4.20
541 542 1.793134 CTTAGGATCCCCGGTCGACG 61.793 65.000 8.55 4.95 43.80 5.12
542 543 2.556840 TTAGGATCCCCGGTCGACGT 62.557 60.000 8.55 0.00 42.24 4.34
543 544 4.203076 GGATCCCCGGTCGACGTG 62.203 72.222 9.92 4.37 42.24 4.49
544 545 4.203076 GATCCCCGGTCGACGTGG 62.203 72.222 16.32 16.32 41.89 4.94
549 550 4.973055 CCGGTCGACGTGGCCAAA 62.973 66.667 7.24 0.00 42.24 3.28
550 551 3.708734 CGGTCGACGTGGCCAAAC 61.709 66.667 7.24 0.18 37.93 2.93
551 552 2.280592 GGTCGACGTGGCCAAACT 60.281 61.111 7.24 0.00 0.00 2.66
552 553 2.604174 GGTCGACGTGGCCAAACTG 61.604 63.158 7.24 0.00 0.00 3.16
553 554 1.593209 GTCGACGTGGCCAAACTGA 60.593 57.895 7.24 0.00 0.00 3.41
554 555 1.144276 TCGACGTGGCCAAACTGAA 59.856 52.632 7.24 0.00 0.00 3.02
555 556 1.155424 TCGACGTGGCCAAACTGAAC 61.155 55.000 7.24 0.00 0.00 3.18
556 557 1.157870 CGACGTGGCCAAACTGAACT 61.158 55.000 7.24 0.00 0.00 3.01
557 558 0.307760 GACGTGGCCAAACTGAACTG 59.692 55.000 7.24 0.00 0.00 3.16
558 559 0.393808 ACGTGGCCAAACTGAACTGT 60.394 50.000 7.24 0.00 0.00 3.55
559 560 0.307760 CGTGGCCAAACTGAACTGTC 59.692 55.000 7.24 0.00 0.00 3.51
560 561 1.388547 GTGGCCAAACTGAACTGTCA 58.611 50.000 7.24 0.00 0.00 3.58
561 562 1.065551 GTGGCCAAACTGAACTGTCAC 59.934 52.381 7.24 0.00 0.00 3.67
562 563 0.307760 GGCCAAACTGAACTGTCACG 59.692 55.000 0.00 0.00 0.00 4.35
563 564 1.014352 GCCAAACTGAACTGTCACGT 58.986 50.000 0.00 0.00 0.00 4.49
564 565 1.003866 GCCAAACTGAACTGTCACGTC 60.004 52.381 0.00 0.00 0.00 4.34
565 566 2.550978 CCAAACTGAACTGTCACGTCT 58.449 47.619 0.00 0.00 0.00 4.18
566 567 2.936498 CCAAACTGAACTGTCACGTCTT 59.064 45.455 0.00 0.00 0.00 3.01
567 568 4.116961 CCAAACTGAACTGTCACGTCTTA 58.883 43.478 0.00 0.00 0.00 2.10
568 569 4.569162 CCAAACTGAACTGTCACGTCTTAA 59.431 41.667 0.00 0.00 0.00 1.85
569 570 5.490213 CAAACTGAACTGTCACGTCTTAAC 58.510 41.667 0.00 0.00 0.00 2.01
570 571 4.380841 ACTGAACTGTCACGTCTTAACA 57.619 40.909 0.00 0.00 0.00 2.41
571 572 4.110482 ACTGAACTGTCACGTCTTAACAC 58.890 43.478 0.00 0.00 0.00 3.32
572 573 4.109766 CTGAACTGTCACGTCTTAACACA 58.890 43.478 0.00 0.00 0.00 3.72
573 574 4.109766 TGAACTGTCACGTCTTAACACAG 58.890 43.478 0.00 0.00 40.33 3.66
574 575 2.470821 ACTGTCACGTCTTAACACAGC 58.529 47.619 0.00 0.00 38.44 4.40
575 576 1.792949 CTGTCACGTCTTAACACAGCC 59.207 52.381 0.00 0.00 0.00 4.85
576 577 1.411246 TGTCACGTCTTAACACAGCCT 59.589 47.619 0.00 0.00 0.00 4.58
577 578 2.159014 TGTCACGTCTTAACACAGCCTT 60.159 45.455 0.00 0.00 0.00 4.35
578 579 2.475487 GTCACGTCTTAACACAGCCTTC 59.525 50.000 0.00 0.00 0.00 3.46
579 580 1.798813 CACGTCTTAACACAGCCTTCC 59.201 52.381 0.00 0.00 0.00 3.46
580 581 1.414919 ACGTCTTAACACAGCCTTCCA 59.585 47.619 0.00 0.00 0.00 3.53
581 582 1.798813 CGTCTTAACACAGCCTTCCAC 59.201 52.381 0.00 0.00 0.00 4.02
582 583 2.152016 GTCTTAACACAGCCTTCCACC 58.848 52.381 0.00 0.00 0.00 4.61
583 584 1.771854 TCTTAACACAGCCTTCCACCA 59.228 47.619 0.00 0.00 0.00 4.17
584 585 2.154462 CTTAACACAGCCTTCCACCAG 58.846 52.381 0.00 0.00 0.00 4.00
585 586 0.250727 TAACACAGCCTTCCACCAGC 60.251 55.000 0.00 0.00 0.00 4.85
586 587 2.674380 CACAGCCTTCCACCAGCC 60.674 66.667 0.00 0.00 0.00 4.85
587 588 3.177884 ACAGCCTTCCACCAGCCA 61.178 61.111 0.00 0.00 0.00 4.75
588 589 2.357836 CAGCCTTCCACCAGCCAT 59.642 61.111 0.00 0.00 0.00 4.40
589 590 2.050350 CAGCCTTCCACCAGCCATG 61.050 63.158 0.00 0.00 0.00 3.66
590 591 2.233566 AGCCTTCCACCAGCCATGA 61.234 57.895 0.00 0.00 0.00 3.07
591 592 1.304381 GCCTTCCACCAGCCATGAA 60.304 57.895 0.00 0.00 0.00 2.57
592 593 0.899717 GCCTTCCACCAGCCATGAAA 60.900 55.000 0.00 0.00 0.00 2.69
593 594 1.180029 CCTTCCACCAGCCATGAAAG 58.820 55.000 0.00 0.00 0.00 2.62
594 595 1.180029 CTTCCACCAGCCATGAAAGG 58.820 55.000 0.00 0.00 0.00 3.11
595 596 0.776810 TTCCACCAGCCATGAAAGGA 59.223 50.000 0.00 0.00 0.00 3.36
596 597 1.002069 TCCACCAGCCATGAAAGGAT 58.998 50.000 0.00 0.00 0.00 3.24
597 598 1.358787 TCCACCAGCCATGAAAGGATT 59.641 47.619 0.00 0.00 0.00 3.01
598 599 1.753073 CCACCAGCCATGAAAGGATTC 59.247 52.381 0.00 0.00 36.04 2.52
608 609 2.778299 TGAAAGGATTCAAGTCACCCG 58.222 47.619 0.00 0.00 42.47 5.28
609 610 1.468914 GAAAGGATTCAAGTCACCCGC 59.531 52.381 0.00 0.00 35.54 6.13
610 611 0.400213 AAGGATTCAAGTCACCCGCA 59.600 50.000 0.00 0.00 0.00 5.69
611 612 0.321653 AGGATTCAAGTCACCCGCAC 60.322 55.000 0.00 0.00 0.00 5.34
612 613 1.305930 GGATTCAAGTCACCCGCACC 61.306 60.000 0.00 0.00 0.00 5.01
613 614 1.303317 ATTCAAGTCACCCGCACCC 60.303 57.895 0.00 0.00 0.00 4.61
614 615 2.063015 ATTCAAGTCACCCGCACCCA 62.063 55.000 0.00 0.00 0.00 4.51
615 616 2.951475 TTCAAGTCACCCGCACCCAC 62.951 60.000 0.00 0.00 0.00 4.61
616 617 3.484806 AAGTCACCCGCACCCACA 61.485 61.111 0.00 0.00 0.00 4.17
617 618 2.829384 AAGTCACCCGCACCCACAT 61.829 57.895 0.00 0.00 0.00 3.21
618 619 1.485294 AAGTCACCCGCACCCACATA 61.485 55.000 0.00 0.00 0.00 2.29
619 620 1.223487 GTCACCCGCACCCACATAT 59.777 57.895 0.00 0.00 0.00 1.78
620 621 0.814010 GTCACCCGCACCCACATATC 60.814 60.000 0.00 0.00 0.00 1.63
621 622 0.980754 TCACCCGCACCCACATATCT 60.981 55.000 0.00 0.00 0.00 1.98
622 623 0.815213 CACCCGCACCCACATATCTG 60.815 60.000 0.00 0.00 0.00 2.90
623 624 1.893808 CCCGCACCCACATATCTGC 60.894 63.158 0.00 0.00 0.00 4.26
624 625 1.153188 CCGCACCCACATATCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
625 626 0.535780 CCGCACCCACATATCTGCAT 60.536 55.000 0.00 0.00 0.00 3.96
626 627 0.870393 CGCACCCACATATCTGCATC 59.130 55.000 0.00 0.00 0.00 3.91
627 628 1.242076 GCACCCACATATCTGCATCC 58.758 55.000 0.00 0.00 0.00 3.51
628 629 1.202855 GCACCCACATATCTGCATCCT 60.203 52.381 0.00 0.00 0.00 3.24
629 630 2.775890 CACCCACATATCTGCATCCTC 58.224 52.381 0.00 0.00 0.00 3.71
630 631 1.345741 ACCCACATATCTGCATCCTCG 59.654 52.381 0.00 0.00 0.00 4.63
631 632 1.436600 CCACATATCTGCATCCTCGC 58.563 55.000 0.00 0.00 0.00 5.03
632 633 1.270465 CCACATATCTGCATCCTCGCA 60.270 52.381 0.00 0.00 40.32 5.10
633 634 2.486918 CACATATCTGCATCCTCGCAA 58.513 47.619 0.00 0.00 42.45 4.85
634 635 2.479275 CACATATCTGCATCCTCGCAAG 59.521 50.000 0.00 0.00 42.45 4.01
635 636 2.074576 CATATCTGCATCCTCGCAAGG 58.925 52.381 0.00 0.00 42.45 3.61
636 637 1.123077 TATCTGCATCCTCGCAAGGT 58.877 50.000 0.00 0.00 42.45 3.50
637 638 0.463295 ATCTGCATCCTCGCAAGGTG 60.463 55.000 0.00 0.00 42.45 4.00
638 639 1.376424 CTGCATCCTCGCAAGGTGT 60.376 57.895 0.00 0.00 42.45 4.16
639 640 1.642037 CTGCATCCTCGCAAGGTGTG 61.642 60.000 0.00 0.00 42.45 3.82
640 641 1.672356 GCATCCTCGCAAGGTGTGT 60.672 57.895 0.00 0.00 43.82 3.72
641 642 1.915614 GCATCCTCGCAAGGTGTGTG 61.916 60.000 0.00 0.00 43.82 3.82
642 643 0.320683 CATCCTCGCAAGGTGTGTGA 60.321 55.000 0.00 0.00 44.57 3.58
651 652 3.428870 CGCAAGGTGTGTGAGTAAGTTAG 59.571 47.826 0.00 0.00 40.42 2.34
657 658 5.047235 AGGTGTGTGAGTAAGTTAGTCCATC 60.047 44.000 13.95 6.48 0.00 3.51
661 662 6.128090 TGTGTGAGTAAGTTAGTCCATCTACG 60.128 42.308 13.95 0.00 0.00 3.51
662 663 5.942236 TGTGAGTAAGTTAGTCCATCTACGT 59.058 40.000 13.95 0.00 0.00 3.57
663 664 6.128090 TGTGAGTAAGTTAGTCCATCTACGTG 60.128 42.308 13.95 0.00 0.00 4.49
664 665 5.942236 TGAGTAAGTTAGTCCATCTACGTGT 59.058 40.000 13.95 0.00 0.00 4.49
665 666 7.065085 GTGAGTAAGTTAGTCCATCTACGTGTA 59.935 40.741 13.95 0.00 0.00 2.90
679 680 6.073327 TCTACGTGTAATCTAATCCTGCTG 57.927 41.667 0.00 0.00 0.00 4.41
681 682 4.683832 ACGTGTAATCTAATCCTGCTGAC 58.316 43.478 0.00 0.00 0.00 3.51
685 686 3.567478 AATCTAATCCTGCTGACCACC 57.433 47.619 0.00 0.00 0.00 4.61
696 697 1.308998 CTGACCACCGCAAAGAAAGT 58.691 50.000 0.00 0.00 0.00 2.66
698 699 0.591659 GACCACCGCAAAGAAAGTCC 59.408 55.000 0.00 0.00 0.00 3.85
883 884 1.247419 CCGGTCACTCTCAGCTCACT 61.247 60.000 0.00 0.00 0.00 3.41
1281 1295 0.971386 ACGGTACCAAACTCATCGGT 59.029 50.000 13.54 0.00 36.79 4.69
1572 1682 1.068055 ACAAGCTCAAGGTACGTACGG 60.068 52.381 21.06 11.28 0.00 4.02
1599 1710 0.379316 CACGATCGACGGGTGTCATA 59.621 55.000 24.34 0.00 45.80 2.15
1600 1711 0.379669 ACGATCGACGGGTGTCATAC 59.620 55.000 24.34 0.00 45.80 2.39
1635 1746 1.079503 GCGCTAACTTAACAGCTGCT 58.920 50.000 15.27 3.62 35.72 4.24
1682 1840 1.005037 GACCATGTCGGACTGTGCA 60.005 57.895 9.88 0.00 38.63 4.57
1683 1841 0.602638 GACCATGTCGGACTGTGCAA 60.603 55.000 9.88 0.00 38.63 4.08
1721 1879 1.289800 GGAAAGCGAAGGTGGACGAC 61.290 60.000 0.00 0.00 39.47 4.34
1778 1936 2.104530 GAGGAGCTAACCGCGGAC 59.895 66.667 35.90 17.91 45.59 4.79
2127 2312 2.363975 GGACACCATGGGCTACGGA 61.364 63.158 18.09 0.00 0.00 4.69
2286 2471 3.998913 TCATGGACCATGTTCTTGCTA 57.001 42.857 29.44 8.98 41.98 3.49
2322 2507 2.567497 GCAGCAAAAGCTCAGGGCA 61.567 57.895 0.00 0.00 44.79 5.36
2332 2517 2.930019 TCAGGGCAGAGGTGGTGG 60.930 66.667 0.00 0.00 0.00 4.61
2747 2938 5.094387 CCTATCCCCTAAGTATGTCCATGT 58.906 45.833 0.00 0.00 0.00 3.21
2811 3002 2.856760 TGGTCCTCAAGAGCCTAGAT 57.143 50.000 0.00 0.00 42.62 1.98
2832 3023 7.544804 AGATATGTAGAGGCATGTGTAATGA 57.455 36.000 0.00 0.00 0.00 2.57
2833 3024 8.143673 AGATATGTAGAGGCATGTGTAATGAT 57.856 34.615 0.00 0.00 0.00 2.45
2890 3081 8.623903 TGACTAGGGTATAGTTTATGTTGTACG 58.376 37.037 0.00 0.00 0.00 3.67
2936 3127 0.251077 AGCTCTTGTTTGGGCTCAGG 60.251 55.000 0.00 0.00 0.00 3.86
2966 3159 8.303156 CCCACAAATTCAACTACATTGATGTTA 58.697 33.333 1.46 0.00 46.80 2.41
3005 3199 4.717233 AATAATTTCATGCAAGCACGGA 57.283 36.364 0.00 0.00 0.00 4.69
3036 3230 1.597027 CCTCCAACCCACACGACAC 60.597 63.158 0.00 0.00 0.00 3.67
3147 3341 1.680989 GGTAGGTGGCGCCCATTTT 60.681 57.895 26.77 7.65 35.28 1.82
3362 3902 4.100035 CCCACATAATACACTCTCAGCAGA 59.900 45.833 0.00 0.00 0.00 4.26
3427 3967 2.676463 GCAACTCTCCAGGATGTCTCAC 60.676 54.545 0.00 0.00 0.00 3.51
3432 3972 3.963374 CTCTCCAGGATGTCTCACCAATA 59.037 47.826 0.00 0.00 0.00 1.90
3668 4242 9.758651 ATTGTTGAATGTGATGATTCCATAATG 57.241 29.630 0.00 0.00 32.20 1.90
3746 4321 3.054802 CAGAATTAGCCTGGACCTCAACT 60.055 47.826 0.00 0.00 0.00 3.16
3759 4334 2.993899 ACCTCAACTAGTCATTTTCGCG 59.006 45.455 0.00 0.00 0.00 5.87
3812 4387 2.268762 TGCAACAGACTGCCACAATA 57.731 45.000 1.25 0.00 41.90 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.966026 AACTAGACGACGCGCTGCC 62.966 63.158 5.73 0.00 0.00 4.85
12 13 1.615107 AAAACTAGACGACGCGCTGC 61.615 55.000 5.73 0.00 0.00 5.25
13 14 0.782384 AAAAACTAGACGACGCGCTG 59.218 50.000 5.73 0.00 0.00 5.18
14 15 2.248487 CTAAAAACTAGACGACGCGCT 58.752 47.619 5.73 0.00 0.00 5.92
15 16 1.981533 ACTAAAAACTAGACGACGCGC 59.018 47.619 5.73 0.00 0.00 6.86
16 17 4.619931 AAACTAAAAACTAGACGACGCG 57.380 40.909 3.53 3.53 0.00 6.01
44 45 9.006215 GCGAAAGTCCACATTACATTAATTAAC 57.994 33.333 0.00 0.00 0.00 2.01
45 46 8.185505 GGCGAAAGTCCACATTACATTAATTAA 58.814 33.333 0.00 0.00 0.00 1.40
46 47 7.466185 CGGCGAAAGTCCACATTACATTAATTA 60.466 37.037 0.00 0.00 0.00 1.40
47 48 6.560711 GGCGAAAGTCCACATTACATTAATT 58.439 36.000 0.00 0.00 0.00 1.40
48 49 5.220777 CGGCGAAAGTCCACATTACATTAAT 60.221 40.000 0.00 0.00 0.00 1.40
49 50 4.093703 CGGCGAAAGTCCACATTACATTAA 59.906 41.667 0.00 0.00 0.00 1.40
50 51 3.619483 CGGCGAAAGTCCACATTACATTA 59.381 43.478 0.00 0.00 0.00 1.90
51 52 2.418628 CGGCGAAAGTCCACATTACATT 59.581 45.455 0.00 0.00 0.00 2.71
52 53 2.006888 CGGCGAAAGTCCACATTACAT 58.993 47.619 0.00 0.00 0.00 2.29
53 54 1.434555 CGGCGAAAGTCCACATTACA 58.565 50.000 0.00 0.00 0.00 2.41
54 55 0.725117 CCGGCGAAAGTCCACATTAC 59.275 55.000 9.30 0.00 0.00 1.89
55 56 1.022451 GCCGGCGAAAGTCCACATTA 61.022 55.000 12.58 0.00 0.00 1.90
56 57 2.332654 GCCGGCGAAAGTCCACATT 61.333 57.895 12.58 0.00 0.00 2.71
57 58 2.746277 GCCGGCGAAAGTCCACAT 60.746 61.111 12.58 0.00 0.00 3.21
58 59 2.951475 AAAGCCGGCGAAAGTCCACA 62.951 55.000 23.20 0.00 0.00 4.17
59 60 1.792118 AAAAGCCGGCGAAAGTCCAC 61.792 55.000 23.20 0.00 0.00 4.02
60 61 0.250381 TAAAAGCCGGCGAAAGTCCA 60.250 50.000 23.20 0.00 0.00 4.02
61 62 1.092348 ATAAAAGCCGGCGAAAGTCC 58.908 50.000 23.20 0.00 0.00 3.85
62 63 1.467342 ACATAAAAGCCGGCGAAAGTC 59.533 47.619 23.20 0.00 0.00 3.01
63 64 1.530323 ACATAAAAGCCGGCGAAAGT 58.470 45.000 23.20 13.45 0.00 2.66
64 65 2.629639 AACATAAAAGCCGGCGAAAG 57.370 45.000 23.20 12.76 0.00 2.62
65 66 4.500603 TTAAACATAAAAGCCGGCGAAA 57.499 36.364 23.20 8.67 0.00 3.46
66 67 4.705337 ATTAAACATAAAAGCCGGCGAA 57.295 36.364 23.20 8.26 0.00 4.70
67 68 4.705337 AATTAAACATAAAAGCCGGCGA 57.295 36.364 23.20 8.45 0.00 5.54
68 69 6.872670 TTTAATTAAACATAAAAGCCGGCG 57.127 33.333 23.20 8.17 0.00 6.46
69 70 7.123190 GCATTTAATTAAACATAAAAGCCGGC 58.877 34.615 21.89 21.89 32.48 6.13
70 71 8.190888 TGCATTTAATTAAACATAAAAGCCGG 57.809 30.769 12.74 0.00 35.80 6.13
71 72 9.635632 CATGCATTTAATTAAACATAAAAGCCG 57.364 29.630 12.74 0.00 35.80 5.52
111 112 8.783093 GCCCTAAATAAAAAGTTTGAAAGCATT 58.217 29.630 0.00 0.00 0.00 3.56
112 113 7.117667 CGCCCTAAATAAAAAGTTTGAAAGCAT 59.882 33.333 0.00 0.00 0.00 3.79
113 114 6.422400 CGCCCTAAATAAAAAGTTTGAAAGCA 59.578 34.615 0.00 0.00 0.00 3.91
114 115 6.617741 GCGCCCTAAATAAAAAGTTTGAAAGC 60.618 38.462 0.00 0.00 0.00 3.51
115 116 6.128661 GGCGCCCTAAATAAAAAGTTTGAAAG 60.129 38.462 18.11 0.00 0.00 2.62
116 117 5.697178 GGCGCCCTAAATAAAAAGTTTGAAA 59.303 36.000 18.11 0.00 0.00 2.69
117 118 5.231702 GGCGCCCTAAATAAAAAGTTTGAA 58.768 37.500 18.11 0.00 0.00 2.69
118 119 4.616373 CGGCGCCCTAAATAAAAAGTTTGA 60.616 41.667 23.46 0.00 0.00 2.69
119 120 3.610677 CGGCGCCCTAAATAAAAAGTTTG 59.389 43.478 23.46 0.00 0.00 2.93
120 121 3.506844 TCGGCGCCCTAAATAAAAAGTTT 59.493 39.130 23.46 0.00 0.00 2.66
121 122 3.083293 TCGGCGCCCTAAATAAAAAGTT 58.917 40.909 23.46 0.00 0.00 2.66
122 123 2.421073 GTCGGCGCCCTAAATAAAAAGT 59.579 45.455 23.46 0.00 0.00 2.66
123 124 2.420722 TGTCGGCGCCCTAAATAAAAAG 59.579 45.455 23.46 1.37 0.00 2.27
124 125 2.434428 TGTCGGCGCCCTAAATAAAAA 58.566 42.857 23.46 0.00 0.00 1.94
125 126 2.110901 TGTCGGCGCCCTAAATAAAA 57.889 45.000 23.46 0.00 0.00 1.52
126 127 2.110901 TTGTCGGCGCCCTAAATAAA 57.889 45.000 23.46 2.92 0.00 1.40
127 128 2.110901 TTTGTCGGCGCCCTAAATAA 57.889 45.000 23.46 5.86 0.00 1.40
128 129 2.110901 TTTTGTCGGCGCCCTAAATA 57.889 45.000 23.46 4.76 0.00 1.40
129 130 1.134175 CATTTTGTCGGCGCCCTAAAT 59.866 47.619 23.46 18.46 0.00 1.40
130 131 0.523966 CATTTTGTCGGCGCCCTAAA 59.476 50.000 23.46 16.99 0.00 1.85
131 132 1.309499 CCATTTTGTCGGCGCCCTAA 61.309 55.000 23.46 10.89 0.00 2.69
132 133 1.747367 CCATTTTGTCGGCGCCCTA 60.747 57.895 23.46 6.42 0.00 3.53
133 134 3.061848 CCATTTTGTCGGCGCCCT 61.062 61.111 23.46 0.00 0.00 5.19
134 135 4.128388 CCCATTTTGTCGGCGCCC 62.128 66.667 23.46 8.57 0.00 6.13
135 136 3.336715 GACCCATTTTGTCGGCGCC 62.337 63.158 19.07 19.07 0.00 6.53
136 137 2.178273 GACCCATTTTGTCGGCGC 59.822 61.111 0.00 0.00 0.00 6.53
141 142 1.165270 CTGGTCCGACCCATTTTGTC 58.835 55.000 15.24 0.00 37.50 3.18
142 143 0.893727 GCTGGTCCGACCCATTTTGT 60.894 55.000 15.24 0.00 37.50 2.83
143 144 1.883021 GCTGGTCCGACCCATTTTG 59.117 57.895 15.24 0.20 37.50 2.44
144 145 1.674322 CGCTGGTCCGACCCATTTT 60.674 57.895 15.24 0.00 37.50 1.82
145 146 2.046314 CGCTGGTCCGACCCATTT 60.046 61.111 15.24 0.00 37.50 2.32
146 147 2.890766 AACGCTGGTCCGACCCATT 61.891 57.895 15.24 1.43 37.50 3.16
147 148 3.319198 AACGCTGGTCCGACCCAT 61.319 61.111 15.24 0.00 37.50 4.00
148 149 4.308458 CAACGCTGGTCCGACCCA 62.308 66.667 15.24 2.61 37.50 4.51
170 171 0.457166 TGTATTTGGGTCGACGCGAG 60.457 55.000 25.18 6.55 36.23 5.03
171 172 0.457166 CTGTATTTGGGTCGACGCGA 60.457 55.000 25.18 21.75 0.00 5.87
172 173 1.995991 CTGTATTTGGGTCGACGCG 59.004 57.895 25.18 3.53 0.00 6.01
173 174 1.713830 GCTGTATTTGGGTCGACGC 59.286 57.895 24.41 24.41 0.00 5.19
174 175 1.995991 CGCTGTATTTGGGTCGACG 59.004 57.895 9.92 0.00 0.00 5.12
175 176 1.702491 GGCGCTGTATTTGGGTCGAC 61.702 60.000 7.64 7.13 0.00 4.20
176 177 1.448893 GGCGCTGTATTTGGGTCGA 60.449 57.895 7.64 0.00 0.00 4.20
177 178 2.808958 CGGCGCTGTATTTGGGTCG 61.809 63.158 8.45 0.00 38.90 4.79
178 179 2.469516 CCGGCGCTGTATTTGGGTC 61.470 63.158 16.49 0.00 0.00 4.46
179 180 2.437716 CCGGCGCTGTATTTGGGT 60.438 61.111 16.49 0.00 0.00 4.51
180 181 3.887868 GCCGGCGCTGTATTTGGG 61.888 66.667 12.58 0.00 0.00 4.12
181 182 4.236416 CGCCGGCGCTGTATTTGG 62.236 66.667 38.48 5.99 0.00 3.28
182 183 2.521733 AAACGCCGGCGCTGTATTTG 62.522 55.000 46.22 19.64 44.19 2.32
183 184 2.329614 AAACGCCGGCGCTGTATTT 61.330 52.632 46.22 33.89 44.19 1.40
184 185 2.744709 AAACGCCGGCGCTGTATT 60.745 55.556 46.22 30.44 44.19 1.89
185 186 3.496131 CAAACGCCGGCGCTGTAT 61.496 61.111 46.22 26.30 44.19 2.29
186 187 4.973055 ACAAACGCCGGCGCTGTA 62.973 61.111 46.22 0.00 44.19 2.74
206 207 4.367023 TTTGAGTCGGTCCGGCGG 62.367 66.667 22.51 22.51 36.23 6.13
207 208 3.110178 GTTTGAGTCGGTCCGGCG 61.110 66.667 10.84 0.00 36.23 6.46
208 209 3.110178 CGTTTGAGTCGGTCCGGC 61.110 66.667 8.12 8.12 0.00 6.13
209 210 2.431942 CCGTTTGAGTCGGTCCGG 60.432 66.667 12.29 0.00 42.62 5.14
210 211 1.731969 GTCCGTTTGAGTCGGTCCG 60.732 63.158 4.39 4.39 46.86 4.79
211 212 0.249573 TTGTCCGTTTGAGTCGGTCC 60.250 55.000 4.36 0.00 46.86 4.46
212 213 1.574134 TTTGTCCGTTTGAGTCGGTC 58.426 50.000 4.36 0.00 46.86 4.79
213 214 2.027003 TTTTGTCCGTTTGAGTCGGT 57.973 45.000 4.36 0.00 46.86 4.69
215 216 2.372350 GCTTTTTGTCCGTTTGAGTCG 58.628 47.619 0.00 0.00 0.00 4.18
216 217 2.372350 CGCTTTTTGTCCGTTTGAGTC 58.628 47.619 0.00 0.00 0.00 3.36
217 218 1.064952 CCGCTTTTTGTCCGTTTGAGT 59.935 47.619 0.00 0.00 0.00 3.41
218 219 1.332375 TCCGCTTTTTGTCCGTTTGAG 59.668 47.619 0.00 0.00 0.00 3.02
219 220 1.064357 GTCCGCTTTTTGTCCGTTTGA 59.936 47.619 0.00 0.00 0.00 2.69
220 221 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
221 222 1.096416 TGTCCGCTTTTTGTCCGTTT 58.904 45.000 0.00 0.00 0.00 3.60
222 223 1.096416 TTGTCCGCTTTTTGTCCGTT 58.904 45.000 0.00 0.00 0.00 4.44
223 224 1.096416 TTTGTCCGCTTTTTGTCCGT 58.904 45.000 0.00 0.00 0.00 4.69
224 225 2.196295 TTTTGTCCGCTTTTTGTCCG 57.804 45.000 0.00 0.00 0.00 4.79
225 226 3.061563 GTGTTTTTGTCCGCTTTTTGTCC 59.938 43.478 0.00 0.00 0.00 4.02
226 227 3.061563 GGTGTTTTTGTCCGCTTTTTGTC 59.938 43.478 0.00 0.00 0.00 3.18
227 228 2.997303 GGTGTTTTTGTCCGCTTTTTGT 59.003 40.909 0.00 0.00 0.00 2.83
228 229 2.028643 CGGTGTTTTTGTCCGCTTTTTG 59.971 45.455 0.00 0.00 37.90 2.44
229 230 2.263945 CGGTGTTTTTGTCCGCTTTTT 58.736 42.857 0.00 0.00 37.90 1.94
230 231 1.202817 ACGGTGTTTTTGTCCGCTTTT 59.797 42.857 2.72 0.00 46.92 2.27
231 232 0.812549 ACGGTGTTTTTGTCCGCTTT 59.187 45.000 2.72 0.00 46.92 3.51
232 233 0.379316 GACGGTGTTTTTGTCCGCTT 59.621 50.000 2.72 0.00 46.92 4.68
233 234 1.441732 GGACGGTGTTTTTGTCCGCT 61.442 55.000 2.72 0.00 46.92 5.52
234 235 1.009335 GGACGGTGTTTTTGTCCGC 60.009 57.895 2.72 0.00 46.92 5.54
236 237 0.734309 AACGGACGGTGTTTTTGTCC 59.266 50.000 0.55 0.55 46.91 4.02
237 238 2.178783 CAAACGGACGGTGTTTTTGTC 58.821 47.619 0.00 0.00 37.44 3.18
238 239 1.135344 CCAAACGGACGGTGTTTTTGT 60.135 47.619 0.00 0.00 37.44 2.83
239 240 1.551145 CCAAACGGACGGTGTTTTTG 58.449 50.000 0.00 0.00 37.44 2.44
240 241 0.456628 CCCAAACGGACGGTGTTTTT 59.543 50.000 0.00 0.00 37.44 1.94
241 242 2.007113 GCCCAAACGGACGGTGTTTT 62.007 55.000 0.00 0.00 37.44 2.43
242 243 2.483197 GCCCAAACGGACGGTGTTT 61.483 57.895 0.00 0.00 40.01 2.83
243 244 2.903350 GCCCAAACGGACGGTGTT 60.903 61.111 0.00 0.00 0.00 3.32
244 245 4.941309 GGCCCAAACGGACGGTGT 62.941 66.667 0.00 0.00 0.00 4.16
258 259 4.324991 AACTCCAACGGGTCGGCC 62.325 66.667 0.00 0.00 34.93 6.13
259 260 3.047877 CAACTCCAACGGGTCGGC 61.048 66.667 0.00 0.00 34.93 5.54
260 261 3.047877 GCAACTCCAACGGGTCGG 61.048 66.667 0.00 0.00 34.93 4.79
261 262 2.027625 GAGCAACTCCAACGGGTCG 61.028 63.158 0.00 0.00 34.93 4.79
262 263 0.250338 AAGAGCAACTCCAACGGGTC 60.250 55.000 0.00 0.00 34.93 4.46
263 264 1.053424 TAAGAGCAACTCCAACGGGT 58.947 50.000 0.00 0.00 34.93 5.28
264 265 2.280628 GATAAGAGCAACTCCAACGGG 58.719 52.381 0.00 0.00 0.00 5.28
265 266 2.932614 CTGATAAGAGCAACTCCAACGG 59.067 50.000 0.00 0.00 0.00 4.44
266 267 2.349886 GCTGATAAGAGCAACTCCAACG 59.650 50.000 0.00 0.00 38.95 4.10
267 268 3.604582 AGCTGATAAGAGCAACTCCAAC 58.395 45.455 0.00 0.00 41.83 3.77
268 269 3.988976 AGCTGATAAGAGCAACTCCAA 57.011 42.857 0.00 0.00 41.83 3.53
269 270 4.261783 CGATAGCTGATAAGAGCAACTCCA 60.262 45.833 0.00 0.00 41.83 3.86
270 271 4.233789 CGATAGCTGATAAGAGCAACTCC 58.766 47.826 0.00 0.00 41.83 3.85
271 272 4.022762 TCCGATAGCTGATAAGAGCAACTC 60.023 45.833 0.00 0.00 41.83 3.01
272 273 3.891977 TCCGATAGCTGATAAGAGCAACT 59.108 43.478 0.00 0.00 41.83 3.16
273 274 3.984633 GTCCGATAGCTGATAAGAGCAAC 59.015 47.826 0.00 0.00 41.83 4.17
274 275 3.636764 TGTCCGATAGCTGATAAGAGCAA 59.363 43.478 0.00 0.00 41.83 3.91
275 276 3.222603 TGTCCGATAGCTGATAAGAGCA 58.777 45.455 0.00 0.00 41.83 4.26
276 277 3.924918 TGTCCGATAGCTGATAAGAGC 57.075 47.619 0.00 0.00 39.46 4.09
277 278 5.446143 ACTTGTCCGATAGCTGATAAGAG 57.554 43.478 14.11 0.00 34.80 2.85
278 279 5.127194 ACAACTTGTCCGATAGCTGATAAGA 59.873 40.000 14.11 0.00 34.80 2.10
279 280 5.352284 ACAACTTGTCCGATAGCTGATAAG 58.648 41.667 7.23 7.23 36.24 1.73
280 281 5.339008 ACAACTTGTCCGATAGCTGATAA 57.661 39.130 0.00 0.00 0.00 1.75
281 282 5.826208 TCTACAACTTGTCCGATAGCTGATA 59.174 40.000 0.00 0.00 0.00 2.15
282 283 3.895232 ACAACTTGTCCGATAGCTGAT 57.105 42.857 0.00 0.00 0.00 2.90
283 284 4.014406 TCTACAACTTGTCCGATAGCTGA 58.986 43.478 0.00 0.00 0.00 4.26
284 285 4.106197 GTCTACAACTTGTCCGATAGCTG 58.894 47.826 0.00 0.00 0.00 4.24
285 286 3.181499 CGTCTACAACTTGTCCGATAGCT 60.181 47.826 0.00 0.00 0.00 3.32
286 287 3.106672 CGTCTACAACTTGTCCGATAGC 58.893 50.000 0.00 0.00 0.00 2.97
287 288 4.611310 TCGTCTACAACTTGTCCGATAG 57.389 45.455 0.00 0.00 0.00 2.08
288 289 4.456911 ACTTCGTCTACAACTTGTCCGATA 59.543 41.667 0.00 0.00 29.69 2.92
289 290 3.255149 ACTTCGTCTACAACTTGTCCGAT 59.745 43.478 0.00 0.00 29.69 4.18
290 291 2.620115 ACTTCGTCTACAACTTGTCCGA 59.380 45.455 0.00 2.81 0.00 4.55
291 292 2.724690 CACTTCGTCTACAACTTGTCCG 59.275 50.000 0.00 0.45 0.00 4.79
292 293 3.973657 TCACTTCGTCTACAACTTGTCC 58.026 45.455 0.00 0.00 0.00 4.02
293 294 5.556570 GCTTTCACTTCGTCTACAACTTGTC 60.557 44.000 0.00 0.00 0.00 3.18
294 295 4.270325 GCTTTCACTTCGTCTACAACTTGT 59.730 41.667 0.00 0.00 0.00 3.16
295 296 4.270084 TGCTTTCACTTCGTCTACAACTTG 59.730 41.667 0.00 0.00 0.00 3.16
296 297 4.439057 TGCTTTCACTTCGTCTACAACTT 58.561 39.130 0.00 0.00 0.00 2.66
297 298 4.054780 TGCTTTCACTTCGTCTACAACT 57.945 40.909 0.00 0.00 0.00 3.16
298 299 4.789095 TTGCTTTCACTTCGTCTACAAC 57.211 40.909 0.00 0.00 0.00 3.32
299 300 4.213270 CCATTGCTTTCACTTCGTCTACAA 59.787 41.667 0.00 0.00 0.00 2.41
300 301 3.745975 CCATTGCTTTCACTTCGTCTACA 59.254 43.478 0.00 0.00 0.00 2.74
301 302 3.746492 ACCATTGCTTTCACTTCGTCTAC 59.254 43.478 0.00 0.00 0.00 2.59
302 303 3.994392 GACCATTGCTTTCACTTCGTCTA 59.006 43.478 0.00 0.00 0.00 2.59
303 304 2.808543 GACCATTGCTTTCACTTCGTCT 59.191 45.455 0.00 0.00 0.00 4.18
304 305 2.548057 TGACCATTGCTTTCACTTCGTC 59.452 45.455 0.00 0.00 0.00 4.20
305 306 2.571212 TGACCATTGCTTTCACTTCGT 58.429 42.857 0.00 0.00 0.00 3.85
306 307 3.624326 TTGACCATTGCTTTCACTTCG 57.376 42.857 0.00 0.00 0.00 3.79
307 308 4.207019 CGTTTTGACCATTGCTTTCACTTC 59.793 41.667 0.00 0.00 0.00 3.01
308 309 4.111916 CGTTTTGACCATTGCTTTCACTT 58.888 39.130 0.00 0.00 0.00 3.16
309 310 3.705604 CGTTTTGACCATTGCTTTCACT 58.294 40.909 0.00 0.00 0.00 3.41
310 311 2.218530 GCGTTTTGACCATTGCTTTCAC 59.781 45.455 0.00 0.00 0.00 3.18
311 312 2.100584 AGCGTTTTGACCATTGCTTTCA 59.899 40.909 0.00 0.00 0.00 2.69
312 313 2.742774 AGCGTTTTGACCATTGCTTTC 58.257 42.857 0.00 0.00 0.00 2.62
313 314 2.865551 CAAGCGTTTTGACCATTGCTTT 59.134 40.909 0.00 0.00 40.40 3.51
314 315 2.472816 CAAGCGTTTTGACCATTGCTT 58.527 42.857 0.00 0.00 42.89 3.91
315 316 1.269726 CCAAGCGTTTTGACCATTGCT 60.270 47.619 3.76 0.00 0.00 3.91
316 317 1.139163 CCAAGCGTTTTGACCATTGC 58.861 50.000 3.76 0.00 0.00 3.56
317 318 1.139163 GCCAAGCGTTTTGACCATTG 58.861 50.000 3.76 0.00 0.00 2.82
318 319 3.586430 GCCAAGCGTTTTGACCATT 57.414 47.368 3.76 0.00 0.00 3.16
330 331 1.300971 TGATCTTGCACTCGCCAAGC 61.301 55.000 0.00 0.00 37.32 4.01
331 332 0.445436 GTGATCTTGCACTCGCCAAG 59.555 55.000 0.00 0.00 37.32 3.61
332 333 0.955428 GGTGATCTTGCACTCGCCAA 60.955 55.000 14.70 0.00 40.91 4.52
333 334 1.375908 GGTGATCTTGCACTCGCCA 60.376 57.895 14.70 0.00 40.91 5.69
334 335 1.078848 AGGTGATCTTGCACTCGCC 60.079 57.895 12.61 12.61 41.43 5.54
335 336 1.364626 CCAGGTGATCTTGCACTCGC 61.365 60.000 0.00 0.00 38.78 5.03
336 337 0.742281 CCCAGGTGATCTTGCACTCG 60.742 60.000 0.00 0.00 38.78 4.18
337 338 0.326264 ACCCAGGTGATCTTGCACTC 59.674 55.000 0.00 0.00 38.78 3.51
338 339 2.468015 ACCCAGGTGATCTTGCACT 58.532 52.632 0.00 0.00 38.78 4.40
348 349 0.322975 CTGTTCTCCTCACCCAGGTG 59.677 60.000 10.73 10.73 43.95 4.00
349 350 1.484444 GCTGTTCTCCTCACCCAGGT 61.484 60.000 0.00 0.00 43.95 4.00
350 351 1.298014 GCTGTTCTCCTCACCCAGG 59.702 63.158 0.00 0.00 45.15 4.45
351 352 1.079543 CGCTGTTCTCCTCACCCAG 60.080 63.158 0.00 0.00 0.00 4.45
352 353 1.118965 TTCGCTGTTCTCCTCACCCA 61.119 55.000 0.00 0.00 0.00 4.51
353 354 0.250513 ATTCGCTGTTCTCCTCACCC 59.749 55.000 0.00 0.00 0.00 4.61
354 355 2.166664 AGTATTCGCTGTTCTCCTCACC 59.833 50.000 0.00 0.00 0.00 4.02
355 356 3.182967 CAGTATTCGCTGTTCTCCTCAC 58.817 50.000 0.00 0.00 0.00 3.51
356 357 2.417379 GCAGTATTCGCTGTTCTCCTCA 60.417 50.000 0.00 0.00 38.65 3.86
357 358 2.159170 AGCAGTATTCGCTGTTCTCCTC 60.159 50.000 0.00 0.00 38.60 3.71
358 359 1.827969 AGCAGTATTCGCTGTTCTCCT 59.172 47.619 0.00 0.00 38.60 3.69
359 360 2.301577 AGCAGTATTCGCTGTTCTCC 57.698 50.000 0.00 0.00 38.60 3.71
366 367 0.816825 CATGGGCAGCAGTATTCGCT 60.817 55.000 0.00 0.00 41.47 4.93
367 368 0.815213 TCATGGGCAGCAGTATTCGC 60.815 55.000 0.00 0.00 0.00 4.70
368 369 1.224075 CTCATGGGCAGCAGTATTCG 58.776 55.000 0.00 0.00 0.00 3.34
369 370 2.338577 ACTCATGGGCAGCAGTATTC 57.661 50.000 0.00 0.00 0.00 1.75
370 371 2.372264 CAACTCATGGGCAGCAGTATT 58.628 47.619 0.00 0.00 0.00 1.89
371 372 1.409241 CCAACTCATGGGCAGCAGTAT 60.409 52.381 0.00 0.00 46.27 2.12
372 373 0.035152 CCAACTCATGGGCAGCAGTA 60.035 55.000 0.00 0.00 46.27 2.74
373 374 1.303888 CCAACTCATGGGCAGCAGT 60.304 57.895 0.00 0.00 46.27 4.40
374 375 3.599584 CCAACTCATGGGCAGCAG 58.400 61.111 0.00 0.00 46.27 4.24
382 383 5.543507 ATTCCTAGTCTAGCCAACTCATG 57.456 43.478 0.86 0.00 0.00 3.07
383 384 6.841755 ACTTATTCCTAGTCTAGCCAACTCAT 59.158 38.462 0.86 0.00 0.00 2.90
384 385 6.195700 ACTTATTCCTAGTCTAGCCAACTCA 58.804 40.000 0.86 0.00 0.00 3.41
385 386 6.718522 ACTTATTCCTAGTCTAGCCAACTC 57.281 41.667 0.86 0.00 0.00 3.01
386 387 8.785184 ATTACTTATTCCTAGTCTAGCCAACT 57.215 34.615 0.86 0.00 0.00 3.16
389 390 9.742144 CTCTATTACTTATTCCTAGTCTAGCCA 57.258 37.037 0.86 0.00 0.00 4.75
390 391 8.680001 GCTCTATTACTTATTCCTAGTCTAGCC 58.320 40.741 0.86 0.00 0.00 3.93
391 392 9.457436 AGCTCTATTACTTATTCCTAGTCTAGC 57.543 37.037 0.86 0.00 0.00 3.42
394 395 9.005777 CGAAGCTCTATTACTTATTCCTAGTCT 57.994 37.037 0.00 0.00 0.00 3.24
395 396 8.785946 ACGAAGCTCTATTACTTATTCCTAGTC 58.214 37.037 0.00 0.00 0.00 2.59
396 397 8.694581 ACGAAGCTCTATTACTTATTCCTAGT 57.305 34.615 0.00 0.00 0.00 2.57
397 398 9.400638 CAACGAAGCTCTATTACTTATTCCTAG 57.599 37.037 0.00 0.00 0.00 3.02
398 399 7.866393 GCAACGAAGCTCTATTACTTATTCCTA 59.134 37.037 0.00 0.00 0.00 2.94
399 400 6.702282 GCAACGAAGCTCTATTACTTATTCCT 59.298 38.462 0.00 0.00 0.00 3.36
400 401 6.702282 AGCAACGAAGCTCTATTACTTATTCC 59.298 38.462 0.00 0.00 42.18 3.01
401 402 7.701809 AGCAACGAAGCTCTATTACTTATTC 57.298 36.000 0.00 0.00 42.18 1.75
402 403 8.391106 CAAAGCAACGAAGCTCTATTACTTATT 58.609 33.333 6.81 0.00 45.89 1.40
403 404 7.011482 CCAAAGCAACGAAGCTCTATTACTTAT 59.989 37.037 6.81 0.00 45.89 1.73
404 405 6.312918 CCAAAGCAACGAAGCTCTATTACTTA 59.687 38.462 6.81 0.00 45.89 2.24
405 406 5.122396 CCAAAGCAACGAAGCTCTATTACTT 59.878 40.000 6.81 0.00 45.89 2.24
406 407 4.631813 CCAAAGCAACGAAGCTCTATTACT 59.368 41.667 6.81 0.00 45.89 2.24
407 408 4.201822 CCCAAAGCAACGAAGCTCTATTAC 60.202 45.833 6.81 0.00 45.89 1.89
408 409 3.938963 CCCAAAGCAACGAAGCTCTATTA 59.061 43.478 6.81 0.00 45.89 0.98
409 410 2.749621 CCCAAAGCAACGAAGCTCTATT 59.250 45.455 6.81 0.00 45.89 1.73
410 411 2.027192 TCCCAAAGCAACGAAGCTCTAT 60.027 45.455 6.81 0.00 45.89 1.98
411 412 1.346395 TCCCAAAGCAACGAAGCTCTA 59.654 47.619 6.81 0.00 45.89 2.43
412 413 0.108585 TCCCAAAGCAACGAAGCTCT 59.891 50.000 6.81 0.00 45.89 4.09
413 414 0.238553 GTCCCAAAGCAACGAAGCTC 59.761 55.000 6.81 0.00 45.89 4.09
415 416 0.238553 GAGTCCCAAAGCAACGAAGC 59.761 55.000 0.00 0.00 0.00 3.86
416 417 1.532868 CTGAGTCCCAAAGCAACGAAG 59.467 52.381 0.00 0.00 0.00 3.79
417 418 1.593196 CTGAGTCCCAAAGCAACGAA 58.407 50.000 0.00 0.00 0.00 3.85
418 419 0.884704 GCTGAGTCCCAAAGCAACGA 60.885 55.000 0.00 0.00 36.91 3.85
419 420 0.886490 AGCTGAGTCCCAAAGCAACG 60.886 55.000 3.32 0.00 39.47 4.10
420 421 0.877743 GAGCTGAGTCCCAAAGCAAC 59.122 55.000 0.00 0.00 39.47 4.17
421 422 0.250901 GGAGCTGAGTCCCAAAGCAA 60.251 55.000 0.00 0.00 39.47 3.91
422 423 1.376466 GGAGCTGAGTCCCAAAGCA 59.624 57.895 0.00 0.00 39.47 3.91
423 424 4.310288 GGAGCTGAGTCCCAAAGC 57.690 61.111 0.00 0.00 37.20 3.51
429 430 2.066999 AATCGGGGGAGCTGAGTCC 61.067 63.158 0.00 0.00 35.64 3.85
430 431 1.144936 CAATCGGGGGAGCTGAGTC 59.855 63.158 0.00 0.00 0.00 3.36
431 432 0.325296 TACAATCGGGGGAGCTGAGT 60.325 55.000 0.00 0.00 0.00 3.41
432 433 1.051812 ATACAATCGGGGGAGCTGAG 58.948 55.000 0.00 0.00 0.00 3.35
433 434 1.416401 GAATACAATCGGGGGAGCTGA 59.584 52.381 0.00 0.00 0.00 4.26
434 435 1.417890 AGAATACAATCGGGGGAGCTG 59.582 52.381 0.00 0.00 0.00 4.24
435 436 1.807814 AGAATACAATCGGGGGAGCT 58.192 50.000 0.00 0.00 0.00 4.09
436 437 3.071167 ACTTAGAATACAATCGGGGGAGC 59.929 47.826 0.00 0.00 0.00 4.70
437 438 4.957684 ACTTAGAATACAATCGGGGGAG 57.042 45.455 0.00 0.00 0.00 4.30
438 439 6.328148 ACAATACTTAGAATACAATCGGGGGA 59.672 38.462 0.00 0.00 0.00 4.81
439 440 6.531021 ACAATACTTAGAATACAATCGGGGG 58.469 40.000 0.00 0.00 0.00 5.40
440 441 8.446599 AAACAATACTTAGAATACAATCGGGG 57.553 34.615 0.00 0.00 0.00 5.73
441 442 9.104965 TGAAACAATACTTAGAATACAATCGGG 57.895 33.333 0.00 0.00 0.00 5.14
446 447 9.917129 TCGTCTGAAACAATACTTAGAATACAA 57.083 29.630 0.00 0.00 0.00 2.41
447 448 9.917129 TTCGTCTGAAACAATACTTAGAATACA 57.083 29.630 0.00 0.00 0.00 2.29
452 453 8.932791 GGAATTTCGTCTGAAACAATACTTAGA 58.067 33.333 0.00 0.00 46.28 2.10
453 454 8.936864 AGGAATTTCGTCTGAAACAATACTTAG 58.063 33.333 0.00 0.00 46.28 2.18
454 455 8.842358 AGGAATTTCGTCTGAAACAATACTTA 57.158 30.769 0.00 0.00 46.28 2.24
455 456 7.745620 AGGAATTTCGTCTGAAACAATACTT 57.254 32.000 0.00 0.00 46.28 2.24
456 457 7.745620 AAGGAATTTCGTCTGAAACAATACT 57.254 32.000 0.00 0.00 46.28 2.12
475 476 9.985730 TCTCACTTTATTAAACTAACGAAGGAA 57.014 29.630 0.00 0.00 0.00 3.36
476 477 9.985730 TTCTCACTTTATTAAACTAACGAAGGA 57.014 29.630 0.00 0.00 0.00 3.36
480 481 9.970395 TCACTTCTCACTTTATTAAACTAACGA 57.030 29.630 0.00 0.00 0.00 3.85
517 518 2.355412 CGACCGGGGATCCTAAGTTTTT 60.355 50.000 12.58 0.00 0.00 1.94
518 519 1.208776 CGACCGGGGATCCTAAGTTTT 59.791 52.381 12.58 0.00 0.00 2.43
519 520 0.828677 CGACCGGGGATCCTAAGTTT 59.171 55.000 12.58 0.00 0.00 2.66
520 521 0.032813 TCGACCGGGGATCCTAAGTT 60.033 55.000 12.58 0.00 0.00 2.66
521 522 0.754587 GTCGACCGGGGATCCTAAGT 60.755 60.000 12.58 6.25 0.00 2.24
522 523 1.793134 CGTCGACCGGGGATCCTAAG 61.793 65.000 12.58 2.74 0.00 2.18
523 524 1.825191 CGTCGACCGGGGATCCTAA 60.825 63.158 12.58 0.00 0.00 2.69
524 525 2.203252 CGTCGACCGGGGATCCTA 60.203 66.667 12.58 0.00 0.00 2.94
525 526 4.437587 ACGTCGACCGGGGATCCT 62.438 66.667 12.58 0.00 42.24 3.24
526 527 4.203076 CACGTCGACCGGGGATCC 62.203 72.222 10.58 1.92 42.24 3.36
532 533 4.973055 TTTGGCCACGTCGACCGG 62.973 66.667 3.88 12.09 42.24 5.28
533 534 3.708734 GTTTGGCCACGTCGACCG 61.709 66.667 3.88 7.90 44.03 4.79
534 535 2.280592 AGTTTGGCCACGTCGACC 60.281 61.111 3.88 0.00 0.00 4.79
535 536 1.155424 TTCAGTTTGGCCACGTCGAC 61.155 55.000 3.88 5.18 0.00 4.20
536 537 1.144276 TTCAGTTTGGCCACGTCGA 59.856 52.632 3.88 0.00 0.00 4.20
537 538 1.157870 AGTTCAGTTTGGCCACGTCG 61.158 55.000 3.88 0.00 0.00 5.12
538 539 0.307760 CAGTTCAGTTTGGCCACGTC 59.692 55.000 3.88 0.00 0.00 4.34
539 540 0.393808 ACAGTTCAGTTTGGCCACGT 60.394 50.000 3.88 0.00 0.00 4.49
540 541 0.307760 GACAGTTCAGTTTGGCCACG 59.692 55.000 3.88 0.00 0.00 4.94
541 542 1.065551 GTGACAGTTCAGTTTGGCCAC 59.934 52.381 3.88 0.00 30.10 5.01
542 543 1.388547 GTGACAGTTCAGTTTGGCCA 58.611 50.000 0.00 0.00 30.10 5.36
543 544 0.307760 CGTGACAGTTCAGTTTGGCC 59.692 55.000 0.00 0.00 30.10 5.36
544 545 1.003866 GACGTGACAGTTCAGTTTGGC 60.004 52.381 0.00 0.00 30.10 4.52
545 546 2.550978 AGACGTGACAGTTCAGTTTGG 58.449 47.619 0.00 0.00 30.10 3.28
546 547 5.062934 TGTTAAGACGTGACAGTTCAGTTTG 59.937 40.000 0.00 0.00 30.10 2.93
547 548 5.063060 GTGTTAAGACGTGACAGTTCAGTTT 59.937 40.000 0.00 0.00 30.10 2.66
548 549 4.565564 GTGTTAAGACGTGACAGTTCAGTT 59.434 41.667 0.00 0.00 30.10 3.16
549 550 4.110482 GTGTTAAGACGTGACAGTTCAGT 58.890 43.478 0.00 0.00 30.10 3.41
550 551 4.109766 TGTGTTAAGACGTGACAGTTCAG 58.890 43.478 0.00 0.00 30.10 3.02
551 552 4.109766 CTGTGTTAAGACGTGACAGTTCA 58.890 43.478 0.00 0.00 31.33 3.18
552 553 3.060473 GCTGTGTTAAGACGTGACAGTTC 60.060 47.826 0.00 0.00 37.07 3.01
553 554 2.864343 GCTGTGTTAAGACGTGACAGTT 59.136 45.455 0.00 0.00 37.07 3.16
554 555 2.470821 GCTGTGTTAAGACGTGACAGT 58.529 47.619 0.00 0.00 37.07 3.55
555 556 1.792949 GGCTGTGTTAAGACGTGACAG 59.207 52.381 0.00 0.00 37.65 3.51
556 557 1.411246 AGGCTGTGTTAAGACGTGACA 59.589 47.619 0.00 0.00 0.00 3.58
557 558 2.150397 AGGCTGTGTTAAGACGTGAC 57.850 50.000 0.00 0.00 0.00 3.67
558 559 2.547218 GGAAGGCTGTGTTAAGACGTGA 60.547 50.000 0.00 0.00 0.00 4.35
559 560 1.798813 GGAAGGCTGTGTTAAGACGTG 59.201 52.381 0.00 0.00 0.00 4.49
560 561 1.414919 TGGAAGGCTGTGTTAAGACGT 59.585 47.619 0.00 0.00 0.00 4.34
561 562 1.798813 GTGGAAGGCTGTGTTAAGACG 59.201 52.381 0.00 0.00 0.00 4.18
562 563 2.152016 GGTGGAAGGCTGTGTTAAGAC 58.848 52.381 0.00 0.00 0.00 3.01
563 564 1.771854 TGGTGGAAGGCTGTGTTAAGA 59.228 47.619 0.00 0.00 0.00 2.10
564 565 2.154462 CTGGTGGAAGGCTGTGTTAAG 58.846 52.381 0.00 0.00 0.00 1.85
565 566 1.817740 GCTGGTGGAAGGCTGTGTTAA 60.818 52.381 0.00 0.00 0.00 2.01
566 567 0.250727 GCTGGTGGAAGGCTGTGTTA 60.251 55.000 0.00 0.00 0.00 2.41
567 568 1.529244 GCTGGTGGAAGGCTGTGTT 60.529 57.895 0.00 0.00 0.00 3.32
568 569 2.113986 GCTGGTGGAAGGCTGTGT 59.886 61.111 0.00 0.00 0.00 3.72
569 570 2.674380 GGCTGGTGGAAGGCTGTG 60.674 66.667 0.00 0.00 39.56 3.66
570 571 2.541907 ATGGCTGGTGGAAGGCTGT 61.542 57.895 0.00 0.00 42.98 4.40
571 572 2.050350 CATGGCTGGTGGAAGGCTG 61.050 63.158 0.00 0.00 42.98 4.85
572 573 1.792757 TTCATGGCTGGTGGAAGGCT 61.793 55.000 0.00 0.00 42.98 4.58
573 574 0.899717 TTTCATGGCTGGTGGAAGGC 60.900 55.000 0.00 0.00 42.86 4.35
574 575 1.180029 CTTTCATGGCTGGTGGAAGG 58.820 55.000 0.00 0.00 30.12 3.46
575 576 1.180029 CCTTTCATGGCTGGTGGAAG 58.820 55.000 0.00 0.00 32.94 3.46
576 577 0.776810 TCCTTTCATGGCTGGTGGAA 59.223 50.000 0.00 0.00 0.00 3.53
577 578 1.002069 ATCCTTTCATGGCTGGTGGA 58.998 50.000 0.00 0.00 0.00 4.02
578 579 1.753073 GAATCCTTTCATGGCTGGTGG 59.247 52.381 0.00 0.00 0.00 4.61
579 580 2.449464 TGAATCCTTTCATGGCTGGTG 58.551 47.619 0.00 0.00 36.94 4.17
580 581 2.905415 TGAATCCTTTCATGGCTGGT 57.095 45.000 0.00 0.00 36.94 4.00
581 582 3.094572 ACTTGAATCCTTTCATGGCTGG 58.905 45.455 0.00 0.00 41.38 4.85
582 583 3.760151 TGACTTGAATCCTTTCATGGCTG 59.240 43.478 8.39 0.00 42.66 4.85
583 584 3.760684 GTGACTTGAATCCTTTCATGGCT 59.239 43.478 8.39 0.00 42.66 4.75
584 585 3.119352 GGTGACTTGAATCCTTTCATGGC 60.119 47.826 0.00 4.22 42.57 4.40
585 586 3.445096 GGGTGACTTGAATCCTTTCATGG 59.555 47.826 0.00 0.00 41.38 3.66
586 587 3.127548 CGGGTGACTTGAATCCTTTCATG 59.872 47.826 0.00 0.00 41.38 3.07
587 588 3.347216 CGGGTGACTTGAATCCTTTCAT 58.653 45.455 0.00 0.00 41.38 2.57
588 589 2.778299 CGGGTGACTTGAATCCTTTCA 58.222 47.619 0.00 0.00 40.09 2.69
589 590 1.468914 GCGGGTGACTTGAATCCTTTC 59.531 52.381 0.00 0.00 0.00 2.62
590 591 1.202879 TGCGGGTGACTTGAATCCTTT 60.203 47.619 0.00 0.00 0.00 3.11
591 592 0.400213 TGCGGGTGACTTGAATCCTT 59.600 50.000 0.00 0.00 0.00 3.36
592 593 0.321653 GTGCGGGTGACTTGAATCCT 60.322 55.000 0.00 0.00 0.00 3.24
593 594 1.305930 GGTGCGGGTGACTTGAATCC 61.306 60.000 0.00 0.00 0.00 3.01
594 595 1.305930 GGGTGCGGGTGACTTGAATC 61.306 60.000 0.00 0.00 0.00 2.52
595 596 1.303317 GGGTGCGGGTGACTTGAAT 60.303 57.895 0.00 0.00 0.00 2.57
596 597 2.112297 GGGTGCGGGTGACTTGAA 59.888 61.111 0.00 0.00 0.00 2.69
597 598 3.164977 TGGGTGCGGGTGACTTGA 61.165 61.111 0.00 0.00 0.00 3.02
598 599 2.978010 GTGGGTGCGGGTGACTTG 60.978 66.667 0.00 0.00 0.00 3.16
599 600 1.485294 TATGTGGGTGCGGGTGACTT 61.485 55.000 0.00 0.00 0.00 3.01
600 601 1.271840 ATATGTGGGTGCGGGTGACT 61.272 55.000 0.00 0.00 0.00 3.41
601 602 0.814010 GATATGTGGGTGCGGGTGAC 60.814 60.000 0.00 0.00 0.00 3.67
602 603 0.980754 AGATATGTGGGTGCGGGTGA 60.981 55.000 0.00 0.00 0.00 4.02
603 604 0.815213 CAGATATGTGGGTGCGGGTG 60.815 60.000 0.00 0.00 0.00 4.61
604 605 1.526887 CAGATATGTGGGTGCGGGT 59.473 57.895 0.00 0.00 0.00 5.28
605 606 1.893808 GCAGATATGTGGGTGCGGG 60.894 63.158 1.57 0.00 0.00 6.13
606 607 0.535780 ATGCAGATATGTGGGTGCGG 60.536 55.000 1.57 0.00 38.84 5.69
607 608 0.870393 GATGCAGATATGTGGGTGCG 59.130 55.000 1.57 0.00 38.84 5.34
608 609 1.202855 AGGATGCAGATATGTGGGTGC 60.203 52.381 1.57 0.00 36.42 5.01
609 610 2.775890 GAGGATGCAGATATGTGGGTG 58.224 52.381 1.57 0.00 0.00 4.61
610 611 1.345741 CGAGGATGCAGATATGTGGGT 59.654 52.381 1.57 0.00 0.00 4.51
611 612 1.943046 GCGAGGATGCAGATATGTGGG 60.943 57.143 1.57 0.00 34.15 4.61
612 613 1.270465 TGCGAGGATGCAGATATGTGG 60.270 52.381 1.57 0.00 40.62 4.17
613 614 2.159327 TGCGAGGATGCAGATATGTG 57.841 50.000 0.00 0.00 40.62 3.21
614 615 2.549563 CCTTGCGAGGATGCAGATATGT 60.550 50.000 15.76 0.00 46.74 2.29
615 616 2.074576 CCTTGCGAGGATGCAGATATG 58.925 52.381 15.76 0.00 46.74 1.78
616 617 1.696336 ACCTTGCGAGGATGCAGATAT 59.304 47.619 27.65 0.00 46.74 1.63
617 618 1.123077 ACCTTGCGAGGATGCAGATA 58.877 50.000 27.65 0.00 46.74 1.98
618 619 0.463295 CACCTTGCGAGGATGCAGAT 60.463 55.000 27.65 0.00 46.74 2.90
619 620 1.078918 CACCTTGCGAGGATGCAGA 60.079 57.895 27.65 0.00 46.74 4.26
620 621 1.376424 ACACCTTGCGAGGATGCAG 60.376 57.895 27.65 12.32 46.74 4.41
621 622 1.672030 CACACCTTGCGAGGATGCA 60.672 57.895 27.65 0.00 46.74 3.96
622 623 1.672356 ACACACCTTGCGAGGATGC 60.672 57.895 27.65 0.00 46.74 3.91
623 624 0.320683 TCACACACCTTGCGAGGATG 60.321 55.000 27.65 23.61 46.74 3.51
624 625 0.036952 CTCACACACCTTGCGAGGAT 60.037 55.000 27.65 11.29 46.74 3.24
625 626 1.367471 CTCACACACCTTGCGAGGA 59.633 57.895 27.65 1.45 46.74 3.71
627 628 2.061773 CTTACTCACACACCTTGCGAG 58.938 52.381 0.00 0.00 39.87 5.03
628 629 1.411246 ACTTACTCACACACCTTGCGA 59.589 47.619 0.00 0.00 0.00 5.10
629 630 1.865865 ACTTACTCACACACCTTGCG 58.134 50.000 0.00 0.00 0.00 4.85
630 631 4.377897 ACTAACTTACTCACACACCTTGC 58.622 43.478 0.00 0.00 0.00 4.01
631 632 4.989168 GGACTAACTTACTCACACACCTTG 59.011 45.833 0.00 0.00 0.00 3.61
632 633 4.652421 TGGACTAACTTACTCACACACCTT 59.348 41.667 0.00 0.00 0.00 3.50
633 634 4.220724 TGGACTAACTTACTCACACACCT 58.779 43.478 0.00 0.00 0.00 4.00
634 635 4.595762 TGGACTAACTTACTCACACACC 57.404 45.455 0.00 0.00 0.00 4.16
635 636 6.026947 AGATGGACTAACTTACTCACACAC 57.973 41.667 0.00 0.00 0.00 3.82
636 637 6.128090 CGTAGATGGACTAACTTACTCACACA 60.128 42.308 0.00 0.00 32.49 3.72
637 638 6.128063 ACGTAGATGGACTAACTTACTCACAC 60.128 42.308 0.00 0.00 32.49 3.82
638 639 5.942236 ACGTAGATGGACTAACTTACTCACA 59.058 40.000 0.00 0.00 32.49 3.58
639 640 6.128063 ACACGTAGATGGACTAACTTACTCAC 60.128 42.308 0.00 0.00 32.49 3.51
640 641 5.942236 ACACGTAGATGGACTAACTTACTCA 59.058 40.000 0.00 0.00 32.49 3.41
641 642 6.434018 ACACGTAGATGGACTAACTTACTC 57.566 41.667 0.00 0.00 32.49 2.59
642 643 7.928307 TTACACGTAGATGGACTAACTTACT 57.072 36.000 0.00 0.00 32.49 2.24
643 644 8.619546 AGATTACACGTAGATGGACTAACTTAC 58.380 37.037 0.00 0.00 32.49 2.34
644 645 8.743085 AGATTACACGTAGATGGACTAACTTA 57.257 34.615 0.00 0.00 32.49 2.24
645 646 7.642082 AGATTACACGTAGATGGACTAACTT 57.358 36.000 0.00 0.00 32.49 2.66
646 647 8.743085 TTAGATTACACGTAGATGGACTAACT 57.257 34.615 0.00 0.00 32.49 2.24
651 652 7.085116 CAGGATTAGATTACACGTAGATGGAC 58.915 42.308 0.00 0.00 0.00 4.02
657 658 5.915758 GTCAGCAGGATTAGATTACACGTAG 59.084 44.000 0.00 0.00 0.00 3.51
661 662 4.811557 GTGGTCAGCAGGATTAGATTACAC 59.188 45.833 0.00 0.00 0.00 2.90
662 663 4.141711 GGTGGTCAGCAGGATTAGATTACA 60.142 45.833 0.00 0.00 0.00 2.41
663 664 4.381411 GGTGGTCAGCAGGATTAGATTAC 58.619 47.826 0.00 0.00 0.00 1.89
664 665 3.069586 CGGTGGTCAGCAGGATTAGATTA 59.930 47.826 1.09 0.00 0.00 1.75
665 666 2.158900 CGGTGGTCAGCAGGATTAGATT 60.159 50.000 1.09 0.00 0.00 2.40
679 680 0.591659 GGACTTTCTTTGCGGTGGTC 59.408 55.000 0.00 0.00 0.00 4.02
681 682 0.593128 CTGGACTTTCTTTGCGGTGG 59.407 55.000 0.00 0.00 0.00 4.61
685 686 5.049405 AGTGATTAACTGGACTTTCTTTGCG 60.049 40.000 0.00 0.00 37.88 4.85
696 697 5.244402 TCCGTTGACTAAGTGATTAACTGGA 59.756 40.000 0.00 0.00 39.81 3.86
698 699 5.577164 CCTCCGTTGACTAAGTGATTAACTG 59.423 44.000 0.00 0.00 39.81 3.16
883 884 1.067565 CGCTTCTGCTCTTGGACAGTA 60.068 52.381 0.00 0.00 36.97 2.74
991 996 0.744414 ACGAAATCCATCGGTGGCTG 60.744 55.000 10.80 0.00 46.82 4.85
1281 1295 4.842531 TGGAAGGAATTACAGATGCAGA 57.157 40.909 0.00 0.00 0.00 4.26
1572 1682 0.797249 CCGTCGATCGTGTGTTCCTC 60.797 60.000 15.94 0.00 37.94 3.71
1635 1746 2.946990 TCATCTGTCGCTCGTACCAATA 59.053 45.455 0.00 0.00 0.00 1.90
1682 1840 2.355108 CCACTCCGACATGATTGACCTT 60.355 50.000 0.00 0.00 0.00 3.50
1683 1841 1.208052 CCACTCCGACATGATTGACCT 59.792 52.381 0.00 0.00 0.00 3.85
1778 1936 2.509336 GCCGTGTGGGAGATGACG 60.509 66.667 0.00 0.00 38.47 4.35
2176 2361 1.669211 GCTTAGAAGCGGTTCGTGACT 60.669 52.381 20.64 6.50 42.88 3.41
2286 2471 1.180029 GCCATTCTGGATGTGTGCTT 58.820 50.000 0.00 0.00 40.96 3.91
2310 2495 1.377994 CACCTCTGCCCTGAGCTTT 59.622 57.895 0.00 0.00 44.23 3.51
2322 2507 2.203998 CACTCCCCCACCACCTCT 60.204 66.667 0.00 0.00 0.00 3.69
2332 2517 2.825836 CTCATTGCCGCACTCCCC 60.826 66.667 0.00 0.00 0.00 4.81
2625 2816 2.791253 TGGCCCACCAGAGAAAGAT 58.209 52.632 0.00 0.00 42.67 2.40
2747 2938 1.212688 GTGTGATCACATCCATGGGGA 59.787 52.381 30.10 5.36 43.97 4.81
2811 3002 8.210265 TCAAATCATTACACATGCCTCTACATA 58.790 33.333 0.00 0.00 0.00 2.29
2890 3081 5.796350 ACGGTTTCACAAACATATCTAGC 57.204 39.130 1.78 0.00 43.15 3.42
2936 3127 5.722021 ATGTAGTTGAATTTGTGGGGTTC 57.278 39.130 0.00 0.00 0.00 3.62
2991 3185 3.383620 AAATTTTCCGTGCTTGCATGA 57.616 38.095 15.52 5.23 0.00 3.07
3005 3199 3.575256 GGGTTGGAGGAACGGTAAATTTT 59.425 43.478 0.00 0.00 35.12 1.82
3017 3211 1.762858 TGTCGTGTGGGTTGGAGGA 60.763 57.895 0.00 0.00 0.00 3.71
3036 3230 0.245539 CATTGTCAGCAAGCCCAAGG 59.754 55.000 0.00 0.00 38.10 3.61
3362 3902 3.909732 TCATGTTCCTGTTGTTTTCCCT 58.090 40.909 0.00 0.00 0.00 4.20
3427 3967 6.481644 GTCAGAGAGTTTGAGGCTATTATTGG 59.518 42.308 0.00 0.00 0.00 3.16
3432 3972 5.690464 ATGTCAGAGAGTTTGAGGCTATT 57.310 39.130 0.00 0.00 0.00 1.73
3553 4124 8.738645 ACAGTCACTTCAGTTTCTTATTTTCT 57.261 30.769 0.00 0.00 0.00 2.52
3668 4242 7.595502 CCGGTCAGATTAATCATTGTAGTAGTC 59.404 40.741 17.56 0.00 0.00 2.59
3746 4321 3.497118 CCAAAATGCGCGAAAATGACTA 58.503 40.909 12.10 0.00 0.00 2.59
3759 4334 1.551883 AGCTTGTGATCCCCAAAATGC 59.448 47.619 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.