Multiple sequence alignment - TraesCS5D01G501100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G501100 chr5D 100.000 6148 0 0 1 6148 529346106 529352253 0.000000e+00 11354
1 TraesCS5D01G501100 chr5A 91.743 3839 160 55 2001 5749 657483118 657486889 0.000000e+00 5188
2 TraesCS5D01G501100 chr5A 91.821 1186 55 13 879 2037 657481942 657483112 0.000000e+00 1615
3 TraesCS5D01G501100 chr5A 90.456 241 7 10 648 883 657481346 657481575 2.780000e-78 303
4 TraesCS5D01G501100 chr5B 92.498 3599 121 50 1986 5497 668187620 668191156 0.000000e+00 5012
5 TraesCS5D01G501100 chr5B 91.441 1659 56 24 400 2037 668186035 668187628 0.000000e+00 2198
6 TraesCS5D01G501100 chr5B 84.504 413 48 8 1 405 668179840 668180244 1.610000e-105 394
7 TraesCS5D01G501100 chr5B 85.494 324 39 2 82 405 668185670 668185985 1.280000e-86 331
8 TraesCS5D01G501100 chr5B 95.283 106 5 0 956 1061 668184303 668184408 1.060000e-37 169
9 TraesCS5D01G501100 chr7B 85.199 554 63 11 1303 1845 452473537 452474082 9.010000e-153 551
10 TraesCS5D01G501100 chr7D 85.252 556 57 14 1303 1845 519691747 519691204 3.240000e-152 549
11 TraesCS5D01G501100 chr1B 85.742 519 60 8 1338 1845 279498944 279499459 2.520000e-148 536
12 TraesCS5D01G501100 chr1B 78.713 202 34 7 1405 1602 344048308 344048112 6.470000e-25 126
13 TraesCS5D01G501100 chr6D 85.282 496 59 7 1361 1845 110315647 110315155 3.310000e-137 499
14 TraesCS5D01G501100 chr3B 83.168 404 52 9 1308 1702 690390173 690390569 7.580000e-94 355
15 TraesCS5D01G501100 chr1D 78.713 202 34 7 1405 1602 270291768 270291572 6.470000e-25 126
16 TraesCS5D01G501100 chr2D 98.387 62 1 0 1349 1410 582152820 582152759 6.520000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G501100 chr5D 529346106 529352253 6147 False 11354.000000 11354 100.000 1 6148 1 chr5D.!!$F1 6147
1 TraesCS5D01G501100 chr5A 657481346 657486889 5543 False 2368.666667 5188 91.340 648 5749 3 chr5A.!!$F1 5101
2 TraesCS5D01G501100 chr5B 668184303 668191156 6853 False 1927.500000 5012 91.179 82 5497 4 chr5B.!!$F2 5415
3 TraesCS5D01G501100 chr7B 452473537 452474082 545 False 551.000000 551 85.199 1303 1845 1 chr7B.!!$F1 542
4 TraesCS5D01G501100 chr7D 519691204 519691747 543 True 549.000000 549 85.252 1303 1845 1 chr7D.!!$R1 542
5 TraesCS5D01G501100 chr1B 279498944 279499459 515 False 536.000000 536 85.742 1338 1845 1 chr1B.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 2165 0.264359 CACTCCCCTCTCATCCCTCT 59.736 60.0 0.00 0.00 0.00 3.69 F
814 2166 0.560688 ACTCCCCTCTCATCCCTCTC 59.439 60.0 0.00 0.00 0.00 3.20 F
2452 4323 0.527113 TCCATTTTGCGCTCATGGTG 59.473 50.0 23.74 10.58 38.93 4.17 F
3982 5900 0.462789 ACATGGACGGACGGGATAAC 59.537 55.0 0.00 0.00 0.00 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 4323 3.047695 TCTCCCCTGAGAAGGATAACC 57.952 52.381 0.00 0.0 44.62 2.85 R
3076 4959 2.200373 AGGTCAAGCGCCTACAAAAT 57.800 45.000 2.29 0.0 33.97 1.82 R
4699 6642 0.701310 ATACCCCCAGTCATTCCCCC 60.701 60.000 0.00 0.0 0.00 5.40 R
6113 8077 0.033504 GAACTGTGGTCGCCAAGAGA 59.966 55.000 0.00 0.0 34.18 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.120399 ACCAATTGATTTAGCAATGCATGG 58.880 37.500 8.35 0.00 38.62 3.66
27 28 4.024387 CCAATTGATTTAGCAATGCATGGC 60.024 41.667 18.94 18.94 38.42 4.40
28 29 3.889520 TTGATTTAGCAATGCATGGCA 57.110 38.095 27.59 11.14 44.86 4.92
29 30 3.167921 TGATTTAGCAATGCATGGCAC 57.832 42.857 27.59 13.09 43.04 5.01
31 32 0.458197 TTTAGCAATGCATGGCACGC 60.458 50.000 27.59 12.24 43.04 5.34
32 33 2.595617 TTAGCAATGCATGGCACGCG 62.596 55.000 27.59 3.53 43.04 6.01
51 52 2.806288 GCGTGTAGCGTGAAATTCAT 57.194 45.000 0.00 0.00 43.66 2.57
52 53 2.430956 GCGTGTAGCGTGAAATTCATG 58.569 47.619 10.65 10.65 43.66 3.07
53 54 2.093625 GCGTGTAGCGTGAAATTCATGA 59.906 45.455 18.46 0.00 43.66 3.07
54 55 3.782250 GCGTGTAGCGTGAAATTCATGAG 60.782 47.826 18.46 5.67 43.66 2.90
55 56 3.674423 GTGTAGCGTGAAATTCATGAGC 58.326 45.455 18.46 14.38 35.46 4.26
56 57 3.372206 GTGTAGCGTGAAATTCATGAGCT 59.628 43.478 18.46 19.72 35.46 4.09
57 58 3.618594 TGTAGCGTGAAATTCATGAGCTC 59.381 43.478 18.46 6.82 35.46 4.09
58 59 2.983229 AGCGTGAAATTCATGAGCTCT 58.017 42.857 18.46 3.64 35.46 4.09
59 60 3.341823 AGCGTGAAATTCATGAGCTCTT 58.658 40.909 18.46 5.66 35.46 2.85
60 61 4.507710 AGCGTGAAATTCATGAGCTCTTA 58.492 39.130 18.46 0.00 35.46 2.10
61 62 4.569966 AGCGTGAAATTCATGAGCTCTTAG 59.430 41.667 18.46 4.80 35.46 2.18
63 64 4.260538 CGTGAAATTCATGAGCTCTTAGCC 60.261 45.833 16.19 0.00 43.77 3.93
65 66 5.298777 GTGAAATTCATGAGCTCTTAGCCAT 59.701 40.000 16.19 0.00 43.77 4.40
67 68 3.482156 TTCATGAGCTCTTAGCCATCC 57.518 47.619 16.19 0.00 43.77 3.51
68 69 2.687297 TCATGAGCTCTTAGCCATCCT 58.313 47.619 16.19 0.00 43.77 3.24
69 70 3.849527 TCATGAGCTCTTAGCCATCCTA 58.150 45.455 16.19 0.00 43.77 2.94
70 71 4.423913 TCATGAGCTCTTAGCCATCCTAT 58.576 43.478 16.19 0.00 43.77 2.57
71 72 4.222366 TCATGAGCTCTTAGCCATCCTATG 59.778 45.833 16.19 5.65 43.77 2.23
72 73 3.849527 TGAGCTCTTAGCCATCCTATGA 58.150 45.455 16.19 0.00 43.77 2.15
73 74 4.423913 TGAGCTCTTAGCCATCCTATGAT 58.576 43.478 16.19 0.00 43.77 2.45
74 75 4.222366 TGAGCTCTTAGCCATCCTATGATG 59.778 45.833 16.19 1.25 43.77 3.07
75 76 4.423913 AGCTCTTAGCCATCCTATGATGA 58.576 43.478 9.36 0.00 46.64 2.92
76 77 5.031495 AGCTCTTAGCCATCCTATGATGAT 58.969 41.667 9.36 1.29 46.64 2.45
77 78 6.200852 AGCTCTTAGCCATCCTATGATGATA 58.799 40.000 9.36 0.45 46.64 2.15
79 80 7.347748 AGCTCTTAGCCATCCTATGATGATATT 59.652 37.037 9.36 0.00 46.64 1.28
90 91 8.992835 TCCTATGATGATATTCACTTGATTCG 57.007 34.615 0.00 0.00 0.00 3.34
91 92 8.037166 TCCTATGATGATATTCACTTGATTCGG 58.963 37.037 0.00 0.00 0.00 4.30
92 93 8.037166 CCTATGATGATATTCACTTGATTCGGA 58.963 37.037 0.00 0.00 0.00 4.55
134 1421 3.708451 ACTATTTTCCACCATGGGGAAC 58.292 45.455 25.77 0.00 43.81 3.62
135 1422 1.555967 ATTTTCCACCATGGGGAACG 58.444 50.000 25.77 8.10 43.81 3.95
147 1434 4.687464 GGAACGATCCAACCGTGT 57.313 55.556 6.88 0.00 45.79 4.49
148 1435 2.922779 GGAACGATCCAACCGTGTT 58.077 52.632 6.88 0.00 45.79 3.32
149 1436 1.232119 GGAACGATCCAACCGTGTTT 58.768 50.000 6.88 0.00 45.79 2.83
150 1437 1.605232 GGAACGATCCAACCGTGTTTT 59.395 47.619 6.88 0.00 45.79 2.43
151 1438 2.350102 GGAACGATCCAACCGTGTTTTC 60.350 50.000 6.88 0.00 45.79 2.29
152 1439 1.956297 ACGATCCAACCGTGTTTTCA 58.044 45.000 0.00 0.00 38.97 2.69
182 1469 2.432456 GCGTCCATGCACGAGTGA 60.432 61.111 14.65 0.00 42.69 3.41
184 1471 2.436539 CGTCCATGCACGAGTGACG 61.437 63.158 2.06 3.55 42.69 4.35
197 1484 0.609957 AGTGACGTGATACCGTGGGA 60.610 55.000 0.00 0.00 41.98 4.37
214 1501 2.675844 TGGGAAACATTAACATCGAGCG 59.324 45.455 0.00 0.00 0.00 5.03
218 1505 4.342772 GAAACATTAACATCGAGCGCAAT 58.657 39.130 11.47 0.00 0.00 3.56
221 1508 4.833126 ACATTAACATCGAGCGCAATAAC 58.167 39.130 11.47 0.00 0.00 1.89
229 1516 3.840468 TCGAGCGCAATAACTAACTTGA 58.160 40.909 11.47 0.00 0.00 3.02
231 1518 4.326278 TCGAGCGCAATAACTAACTTGAAG 59.674 41.667 11.47 0.00 0.00 3.02
251 1538 5.800438 TGAAGAACATCTAACTGATTCGACG 59.200 40.000 0.00 0.00 32.05 5.12
255 1542 4.861210 ACATCTAACTGATTCGACGGATC 58.139 43.478 9.31 9.31 32.05 3.36
256 1543 4.338400 ACATCTAACTGATTCGACGGATCA 59.662 41.667 17.72 17.72 32.05 2.92
261 1548 3.926616 ACTGATTCGACGGATCAAAACT 58.073 40.909 19.12 0.60 0.00 2.66
265 1552 4.935205 TGATTCGACGGATCAAAACTTCAT 59.065 37.500 16.52 0.00 0.00 2.57
268 1555 4.811908 TCGACGGATCAAAACTTCATACA 58.188 39.130 0.00 0.00 0.00 2.29
284 1571 3.502211 TCATACATGCTCGCTCGATTCTA 59.498 43.478 0.00 0.00 0.00 2.10
293 1580 1.346365 GCTCGATTCTACAACGCACA 58.654 50.000 0.00 0.00 0.00 4.57
317 1604 1.593006 GCACATACCACATACGACAGC 59.407 52.381 0.00 0.00 0.00 4.40
324 1611 2.184322 CATACGACAGCTGCCCGT 59.816 61.111 29.07 29.07 39.94 5.28
355 1642 6.390987 AAAGCTCGTAAAGACAATTACTCG 57.609 37.500 0.00 0.00 34.35 4.18
364 1651 2.098770 AGACAATTACTCGGTAGCGGAC 59.901 50.000 15.23 0.00 0.00 4.79
366 1653 2.159282 ACAATTACTCGGTAGCGGACAG 60.159 50.000 15.23 7.23 0.00 3.51
376 1663 5.477510 TCGGTAGCGGACAGTTAAATTAAA 58.522 37.500 15.23 0.00 0.00 1.52
383 1670 7.248437 AGCGGACAGTTAAATTAAATAGCAAC 58.752 34.615 0.00 0.00 0.00 4.17
384 1671 7.024768 GCGGACAGTTAAATTAAATAGCAACA 58.975 34.615 0.00 0.00 0.00 3.33
394 1681 8.644374 AAATTAAATAGCAACAAGTAGGACCA 57.356 30.769 0.00 0.00 0.00 4.02
396 1683 4.910458 AATAGCAACAAGTAGGACCAGT 57.090 40.909 0.00 0.00 0.00 4.00
409 1751 2.092646 AGGACCAGTAACACACAAAGCA 60.093 45.455 0.00 0.00 0.00 3.91
410 1752 2.884639 GGACCAGTAACACACAAAGCAT 59.115 45.455 0.00 0.00 0.00 3.79
456 1798 8.260818 ACTTATATGTCTACTCATTTGCACACT 58.739 33.333 0.00 0.00 0.00 3.55
469 1811 9.277565 CTCATTTGCACACTACATATACAAAAC 57.722 33.333 0.00 0.00 0.00 2.43
470 1812 8.787852 TCATTTGCACACTACATATACAAAACA 58.212 29.630 0.00 0.00 0.00 2.83
483 1825 8.387354 ACATATACAAAACACACATCATGTACG 58.613 33.333 0.00 0.00 40.64 3.67
484 1826 6.795098 ATACAAAACACACATCATGTACGT 57.205 33.333 0.00 0.00 40.64 3.57
486 1828 5.981174 ACAAAACACACATCATGTACGTAC 58.019 37.500 18.90 18.90 40.64 3.67
488 1830 6.037281 ACAAAACACACATCATGTACGTACAA 59.963 34.615 30.46 16.86 40.64 2.41
492 1834 7.197071 ACACACATCATGTACGTACAAAAAT 57.803 32.000 30.46 20.20 40.64 1.82
493 1835 7.075121 ACACACATCATGTACGTACAAAAATG 58.925 34.615 30.46 29.19 40.64 2.32
494 1836 7.075121 CACACATCATGTACGTACAAAAATGT 58.925 34.615 30.46 29.72 40.64 2.71
495 1837 8.224437 CACACATCATGTACGTACAAAAATGTA 58.776 33.333 31.60 18.86 40.64 2.29
535 1878 5.818136 TCTGATCCACCGAATTCAAATTC 57.182 39.130 6.22 5.56 41.02 2.17
536 1879 5.252547 TCTGATCCACCGAATTCAAATTCA 58.747 37.500 14.11 0.25 43.85 2.57
537 1880 5.709631 TCTGATCCACCGAATTCAAATTCAA 59.290 36.000 14.11 0.00 43.85 2.69
538 1881 6.208402 TCTGATCCACCGAATTCAAATTCAAA 59.792 34.615 14.11 0.00 43.85 2.69
540 1883 7.385267 TGATCCACCGAATTCAAATTCAAATT 58.615 30.769 14.11 0.00 43.85 1.82
541 1884 7.877097 TGATCCACCGAATTCAAATTCAAATTT 59.123 29.630 14.11 0.00 43.85 1.82
542 1885 7.650834 TCCACCGAATTCAAATTCAAATTTC 57.349 32.000 14.11 0.00 43.85 2.17
543 1886 7.441017 TCCACCGAATTCAAATTCAAATTTCT 58.559 30.769 14.11 0.00 43.85 2.52
544 1887 7.598493 TCCACCGAATTCAAATTCAAATTTCTC 59.402 33.333 14.11 0.00 43.85 2.87
545 1888 7.599998 CCACCGAATTCAAATTCAAATTTCTCT 59.400 33.333 14.11 0.00 43.85 3.10
574 1917 1.733389 GCATGCACCTGGTCGATTTTG 60.733 52.381 14.21 0.00 0.00 2.44
578 1921 1.880027 GCACCTGGTCGATTTTGAACT 59.120 47.619 0.00 0.00 0.00 3.01
579 1922 3.071479 GCACCTGGTCGATTTTGAACTA 58.929 45.455 0.00 0.00 0.00 2.24
593 1940 9.151471 CGATTTTGAACTAGACCAGAATTAAGA 57.849 33.333 0.00 0.00 0.00 2.10
623 1970 1.271271 GCTATCCATGGGGCAGAAGAG 60.271 57.143 13.02 0.00 0.00 2.85
630 1977 1.201429 TGGGGCAGAAGAGGAGGAAC 61.201 60.000 0.00 0.00 0.00 3.62
702 2050 1.841663 CGGCGAAGGAACAACACAGG 61.842 60.000 0.00 0.00 0.00 4.00
703 2051 1.282875 GCGAAGGAACAACACAGGC 59.717 57.895 0.00 0.00 0.00 4.85
704 2052 1.444119 GCGAAGGAACAACACAGGCA 61.444 55.000 0.00 0.00 0.00 4.75
705 2053 0.307760 CGAAGGAACAACACAGGCAC 59.692 55.000 0.00 0.00 0.00 5.01
706 2054 1.388547 GAAGGAACAACACAGGCACA 58.611 50.000 0.00 0.00 0.00 4.57
767 2119 2.543797 GGATCCACAACCCACCCCA 61.544 63.158 6.95 0.00 0.00 4.96
768 2120 1.000896 GATCCACAACCCACCCCAG 60.001 63.158 0.00 0.00 0.00 4.45
769 2121 3.224007 ATCCACAACCCACCCCAGC 62.224 63.158 0.00 0.00 0.00 4.85
770 2122 4.994756 CCACAACCCACCCCAGCC 62.995 72.222 0.00 0.00 0.00 4.85
771 2123 4.994756 CACAACCCACCCCAGCCC 62.995 72.222 0.00 0.00 0.00 5.19
806 2158 2.997315 CACGCCACTCCCCTCTCA 60.997 66.667 0.00 0.00 0.00 3.27
807 2159 2.039624 ACGCCACTCCCCTCTCAT 59.960 61.111 0.00 0.00 0.00 2.90
808 2160 2.060980 ACGCCACTCCCCTCTCATC 61.061 63.158 0.00 0.00 0.00 2.92
809 2161 2.801631 CGCCACTCCCCTCTCATCC 61.802 68.421 0.00 0.00 0.00 3.51
810 2162 2.447714 GCCACTCCCCTCTCATCCC 61.448 68.421 0.00 0.00 0.00 3.85
811 2163 1.316266 CCACTCCCCTCTCATCCCT 59.684 63.158 0.00 0.00 0.00 4.20
812 2164 0.762461 CCACTCCCCTCTCATCCCTC 60.762 65.000 0.00 0.00 0.00 4.30
813 2165 0.264359 CACTCCCCTCTCATCCCTCT 59.736 60.000 0.00 0.00 0.00 3.69
814 2166 0.560688 ACTCCCCTCTCATCCCTCTC 59.439 60.000 0.00 0.00 0.00 3.20
815 2167 0.859760 CTCCCCTCTCATCCCTCTCT 59.140 60.000 0.00 0.00 0.00 3.10
859 2224 3.949113 AGTCTTGGTCTATTCGAGTCCTC 59.051 47.826 0.00 0.00 34.67 3.71
910 2651 4.643387 AAGCGGAGGTGGTGGTGC 62.643 66.667 0.00 0.00 39.47 5.01
925 2666 1.627297 GGTGCTAGTGGGGAGGAAGG 61.627 65.000 0.00 0.00 0.00 3.46
930 2671 1.821966 TAGTGGGGAGGAAGGAGCCA 61.822 60.000 0.00 0.00 0.00 4.75
949 2690 4.806339 AGCGGGGGAGGGAGGAAG 62.806 72.222 0.00 0.00 0.00 3.46
952 2693 3.707189 GGGGGAGGGAGGAAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
953 2694 2.040359 GGGGAGGGAGGAAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
954 2695 2.040359 GGGAGGGAGGAAGGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
1056 2799 2.485122 CCGCCGCACTTCAAATCC 59.515 61.111 0.00 0.00 0.00 3.01
1075 2818 2.818274 CCCGCCTCGGTAAGCAAC 60.818 66.667 4.47 0.00 46.80 4.17
1078 2821 2.818274 GCCTCGGTAAGCAACCCG 60.818 66.667 2.90 2.42 46.62 5.28
1122 2867 3.142838 CATTGGCCGCTTCCCCTG 61.143 66.667 0.00 0.00 0.00 4.45
1248 2994 2.037527 GGGTCCTGGTCTCCTCGT 59.962 66.667 0.00 0.00 0.00 4.18
1295 3041 2.361737 GGCCTTGTTCCCTCCTGC 60.362 66.667 0.00 0.00 0.00 4.85
1853 3633 3.018856 TGATACCTTGGCAAAGCATCTG 58.981 45.455 9.77 0.00 30.39 2.90
1928 3712 6.662865 ATCACAAAACAAATGTGGTCCATA 57.337 33.333 0.00 0.00 46.37 2.74
1949 3733 7.942341 TCCATACTAGTGTTGTTTCTGGATTTT 59.058 33.333 5.39 0.00 0.00 1.82
1996 3780 6.386654 TGTTTTTCACACTTCTTTCCTTGTC 58.613 36.000 0.00 0.00 0.00 3.18
2040 3866 6.237901 TCACAAATGTGGTCTATGCTTACTT 58.762 36.000 13.22 0.00 45.65 2.24
2050 3919 8.780249 GTGGTCTATGCTTACTTTTGTTTCTAA 58.220 33.333 0.00 0.00 0.00 2.10
2143 4013 8.970020 TCTTGTTATGTTAGACTATAACCGGAA 58.030 33.333 9.46 0.00 38.42 4.30
2144 4014 9.590451 CTTGTTATGTTAGACTATAACCGGAAA 57.410 33.333 9.46 0.00 38.42 3.13
2151 4021 9.754382 TGTTAGACTATAACCGGAAATAATCAC 57.246 33.333 9.46 1.18 0.00 3.06
2243 4113 2.950975 TGATTATTGCACGATGGCATGT 59.049 40.909 3.81 0.12 44.48 3.21
2276 4146 7.164230 ACTACATTTGTTTTGGTTCTCACAA 57.836 32.000 0.00 0.00 0.00 3.33
2452 4323 0.527113 TCCATTTTGCGCTCATGGTG 59.473 50.000 23.74 10.58 38.93 4.17
3291 5174 4.816925 GCTTCTGTAATGTTCCATCCTACC 59.183 45.833 0.00 0.00 0.00 3.18
3292 5175 5.396884 GCTTCTGTAATGTTCCATCCTACCT 60.397 44.000 0.00 0.00 0.00 3.08
3354 5237 9.995003 TTGAAAAGTTCCAGCAATAACATAATT 57.005 25.926 0.00 0.00 0.00 1.40
3372 5255 8.324163 ACATAATTCTCACCAACTAGTTGTTC 57.676 34.615 29.05 0.00 38.85 3.18
3402 5285 8.851145 TGCAAATTCCAACTAGTACAATGTTAA 58.149 29.630 0.00 0.00 0.00 2.01
3403 5286 9.341899 GCAAATTCCAACTAGTACAATGTTAAG 57.658 33.333 0.00 0.00 0.00 1.85
3454 5338 5.300286 AGTGCAACAGAACTATCTTTGCTTT 59.700 36.000 17.85 9.53 43.01 3.51
3515 5399 7.785028 TCTGGTCTCTGTAGTGTATAAATGGAT 59.215 37.037 0.00 0.00 0.00 3.41
3541 5425 6.824305 ATCCTGTTAAACCATATATGCAGC 57.176 37.500 7.24 0.00 0.00 5.25
3576 5460 9.994432 CATAGATTTCTTGGTGTCAATAAAGAC 57.006 33.333 0.00 0.00 34.15 3.01
3684 5594 7.693951 GTGTTAGCAATAGTCAAAACTGCATAG 59.306 37.037 0.00 0.00 36.92 2.23
3854 5764 3.159213 AGAATGTCATTGACCCAGCAA 57.841 42.857 14.05 0.00 0.00 3.91
3860 5770 3.444742 TGTCATTGACCCAGCAAATCATC 59.555 43.478 14.05 0.00 0.00 2.92
3915 5825 8.495949 CCATACGTATCCACTGTTCAATAATTC 58.504 37.037 4.74 0.00 0.00 2.17
3982 5900 0.462789 ACATGGACGGACGGGATAAC 59.537 55.000 0.00 0.00 0.00 1.89
3987 5905 2.353145 CGGACGGGATAACGAGCG 60.353 66.667 0.00 0.00 37.61 5.03
3988 5906 2.657620 GGACGGGATAACGAGCGC 60.658 66.667 0.00 0.00 37.61 5.92
3989 5907 2.103538 GACGGGATAACGAGCGCA 59.896 61.111 11.47 0.00 37.61 6.09
4023 5942 1.197430 CCAGCCACCTCTCCTGAACT 61.197 60.000 0.00 0.00 0.00 3.01
4038 5957 4.642437 TCCTGAACTGCAATGTTTTGTGTA 59.358 37.500 0.00 0.00 35.17 2.90
4060 5979 7.802738 TGTAACATACACTTTGTTGTAGATGC 58.197 34.615 0.00 0.00 37.81 3.91
4112 6055 3.341823 AGTTTGCCTGCTCTGAAGTATG 58.658 45.455 0.00 0.00 0.00 2.39
4176 6119 5.448438 TGCGTTTAGACAAAAGTTATGCAG 58.552 37.500 0.00 0.00 0.00 4.41
4385 6328 6.240894 TGAGGATGAGACAGCAAGTTTTAAT 58.759 36.000 0.00 0.00 0.00 1.40
4392 6335 7.861630 TGAGACAGCAAGTTTTAATGTAAGAC 58.138 34.615 0.00 0.00 0.00 3.01
4425 6368 7.201938 CCAATACATATGACTTTGCCCAGAATT 60.202 37.037 10.38 0.00 0.00 2.17
4510 6453 9.076596 GCTCTTTTTATGTATTGCTTTAACTGG 57.923 33.333 0.00 0.00 0.00 4.00
4531 6474 5.539979 TGGTAACAGCGAGTATTTGTGTTA 58.460 37.500 0.00 0.00 46.17 2.41
4627 6570 3.056465 AGGTCAAGAAGAATGGAGACGAC 60.056 47.826 0.00 0.00 0.00 4.34
4696 6639 8.902806 TCAAGGGTATGTTTTGATTATCATGTC 58.097 33.333 0.00 0.00 0.00 3.06
4699 6642 7.442364 AGGGTATGTTTTGATTATCATGTCTCG 59.558 37.037 0.00 0.00 0.00 4.04
4700 6643 7.307989 GGGTATGTTTTGATTATCATGTCTCGG 60.308 40.741 0.00 0.00 0.00 4.63
4822 6766 9.531942 TTGCATAACATGGAAATATGAATTGAC 57.468 29.630 0.00 0.00 37.67 3.18
4830 6774 5.721000 TGGAAATATGAATTGACCCAAAGCT 59.279 36.000 0.00 0.00 0.00 3.74
4854 6798 5.769662 TGATTTAACACAGTGGCTTTGAGAT 59.230 36.000 5.31 0.00 0.00 2.75
4857 6801 2.704572 ACACAGTGGCTTTGAGATAGC 58.295 47.619 5.31 0.00 37.91 2.97
4871 6815 4.486090 TGAGATAGCGTGAAACTTGAGAC 58.514 43.478 0.00 0.00 31.75 3.36
4885 6829 7.606456 TGAAACTTGAGACTTACACTTTTGAGT 59.394 33.333 0.00 0.00 0.00 3.41
4991 6935 2.004408 GCAGGATGGAGGATGCCCTT 62.004 60.000 0.00 0.00 39.04 3.95
5243 7190 1.875514 CGGTCCAACCAGATATGCATG 59.124 52.381 10.16 0.00 38.47 4.06
5244 7191 1.610522 GGTCCAACCAGATATGCATGC 59.389 52.381 11.82 11.82 38.42 4.06
5245 7192 2.579873 GTCCAACCAGATATGCATGCT 58.420 47.619 20.33 7.07 0.00 3.79
5248 7195 3.382227 TCCAACCAGATATGCATGCTTTG 59.618 43.478 20.33 7.94 0.00 2.77
5494 7443 6.865834 ACAGAACTCAAGAGAATATCTGGT 57.134 37.500 19.86 10.50 38.67 4.00
5501 7450 4.870426 TCAAGAGAATATCTGGTGTTTCGC 59.130 41.667 0.00 0.00 38.67 4.70
5520 7469 2.608467 CAGCTTTGAACTGCTAGTGC 57.392 50.000 0.00 0.00 37.81 4.40
5521 7470 2.149578 CAGCTTTGAACTGCTAGTGCT 58.850 47.619 0.00 0.00 37.81 4.40
5522 7471 3.329386 CAGCTTTGAACTGCTAGTGCTA 58.671 45.455 0.00 0.00 37.81 3.49
5529 7478 3.260632 TGAACTGCTAGTGCTATGGTTCA 59.739 43.478 0.00 0.00 39.65 3.18
5538 7487 2.954318 GTGCTATGGTTCATCAGGCATT 59.046 45.455 0.00 0.00 31.29 3.56
5544 7493 2.309755 TGGTTCATCAGGCATTTCCTCT 59.690 45.455 0.00 0.00 45.52 3.69
5548 7497 4.148128 TCATCAGGCATTTCCTCTTCTC 57.852 45.455 0.00 0.00 45.52 2.87
5555 7504 3.446516 GGCATTTCCTCTTCTCTTTGCAT 59.553 43.478 0.00 0.00 0.00 3.96
5559 7508 2.440409 TCCTCTTCTCTTTGCATTGCC 58.560 47.619 6.12 0.00 0.00 4.52
5569 7518 0.824595 TTGCATTGCCAGTGTCTGCT 60.825 50.000 6.12 0.00 34.02 4.24
5570 7519 0.036590 TGCATTGCCAGTGTCTGCTA 59.963 50.000 6.12 0.00 34.02 3.49
5572 7521 1.065102 GCATTGCCAGTGTCTGCTATG 59.935 52.381 0.00 8.96 30.97 2.23
5573 7522 2.362736 CATTGCCAGTGTCTGCTATGT 58.637 47.619 6.26 0.00 0.00 2.29
5574 7523 1.812235 TTGCCAGTGTCTGCTATGTG 58.188 50.000 0.00 0.00 0.00 3.21
5575 7524 0.686789 TGCCAGTGTCTGCTATGTGT 59.313 50.000 0.00 0.00 0.00 3.72
5576 7525 1.081892 GCCAGTGTCTGCTATGTGTG 58.918 55.000 0.00 0.00 0.00 3.82
5577 7526 1.609061 GCCAGTGTCTGCTATGTGTGT 60.609 52.381 0.00 0.00 0.00 3.72
5578 7527 2.353704 GCCAGTGTCTGCTATGTGTGTA 60.354 50.000 0.00 0.00 0.00 2.90
5586 7539 1.009829 GCTATGTGTGTAGCTGCACC 58.990 55.000 28.83 20.63 42.93 5.01
5589 7542 1.527034 ATGTGTGTAGCTGCACCAAG 58.473 50.000 28.83 0.00 38.52 3.61
5590 7543 0.534877 TGTGTGTAGCTGCACCAAGG 60.535 55.000 28.83 0.00 38.52 3.61
5607 7560 5.261216 ACCAAGGGTGTAGTCCATATTTTG 58.739 41.667 0.00 0.00 32.98 2.44
5638 7592 2.497138 TGAAGATGACAACCTGTGCTG 58.503 47.619 0.00 0.00 0.00 4.41
5644 7598 2.285083 TGACAACCTGTGCTGTACAAC 58.715 47.619 0.00 0.00 39.20 3.32
5694 7648 5.104360 TCAGCTAGTATGCTCCAGGATTTTT 60.104 40.000 0.00 0.00 41.98 1.94
5704 7658 8.593945 ATGCTCCAGGATTTTTAAGTGATTTA 57.406 30.769 0.00 0.00 0.00 1.40
5705 7659 8.415950 TGCTCCAGGATTTTTAAGTGATTTAA 57.584 30.769 0.00 0.00 0.00 1.52
5706 7660 8.522830 TGCTCCAGGATTTTTAAGTGATTTAAG 58.477 33.333 0.00 0.00 33.03 1.85
5707 7661 7.489435 GCTCCAGGATTTTTAAGTGATTTAAGC 59.511 37.037 0.00 0.00 33.03 3.09
5708 7662 8.415950 TCCAGGATTTTTAAGTGATTTAAGCA 57.584 30.769 0.00 0.00 33.03 3.91
5709 7663 8.522830 TCCAGGATTTTTAAGTGATTTAAGCAG 58.477 33.333 0.00 0.00 33.03 4.24
5710 7664 8.306761 CCAGGATTTTTAAGTGATTTAAGCAGT 58.693 33.333 0.00 0.00 33.03 4.40
5711 7665 9.696917 CAGGATTTTTAAGTGATTTAAGCAGTT 57.303 29.630 8.36 8.36 33.03 3.16
5712 7666 9.696917 AGGATTTTTAAGTGATTTAAGCAGTTG 57.303 29.630 12.80 0.00 33.03 3.16
5736 7700 3.951775 TTGTGTTTATTGGTGATGGGC 57.048 42.857 0.00 0.00 0.00 5.36
5741 7705 3.900601 TGTTTATTGGTGATGGGCTTTGT 59.099 39.130 0.00 0.00 0.00 2.83
5742 7706 4.346418 TGTTTATTGGTGATGGGCTTTGTT 59.654 37.500 0.00 0.00 0.00 2.83
5749 7713 2.552315 GTGATGGGCTTTGTTTCTTCGA 59.448 45.455 0.00 0.00 0.00 3.71
5750 7714 3.004315 GTGATGGGCTTTGTTTCTTCGAA 59.996 43.478 0.00 0.00 0.00 3.71
5751 7715 3.004315 TGATGGGCTTTGTTTCTTCGAAC 59.996 43.478 0.00 0.00 0.00 3.95
5752 7716 2.650322 TGGGCTTTGTTTCTTCGAACT 58.350 42.857 0.00 0.00 0.00 3.01
5753 7717 3.020984 TGGGCTTTGTTTCTTCGAACTT 58.979 40.909 0.00 0.00 0.00 2.66
5754 7718 3.445805 TGGGCTTTGTTTCTTCGAACTTT 59.554 39.130 0.00 0.00 0.00 2.66
5755 7719 4.042398 GGGCTTTGTTTCTTCGAACTTTC 58.958 43.478 0.00 0.00 0.00 2.62
5756 7720 4.042398 GGCTTTGTTTCTTCGAACTTTCC 58.958 43.478 0.00 0.00 0.00 3.13
5757 7721 4.202020 GGCTTTGTTTCTTCGAACTTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
5758 7722 5.340803 GCTTTGTTTCTTCGAACTTTCCTT 58.659 37.500 0.00 0.00 0.00 3.36
5759 7723 6.459161 GGCTTTGTTTCTTCGAACTTTCCTTA 60.459 38.462 0.00 0.00 0.00 2.69
5760 7724 6.970613 GCTTTGTTTCTTCGAACTTTCCTTAA 59.029 34.615 0.00 0.00 0.00 1.85
5761 7725 7.486870 GCTTTGTTTCTTCGAACTTTCCTTAAA 59.513 33.333 0.00 0.00 0.00 1.52
5762 7726 9.349145 CTTTGTTTCTTCGAACTTTCCTTAAAA 57.651 29.630 0.00 0.00 0.00 1.52
5763 7727 9.694137 TTTGTTTCTTCGAACTTTCCTTAAAAA 57.306 25.926 0.00 0.00 0.00 1.94
5799 7763 7.835634 TTTTTAACTGAAAACATTCGCCTTT 57.164 28.000 0.00 0.00 36.74 3.11
5800 7764 6.820470 TTTAACTGAAAACATTCGCCTTTG 57.180 33.333 0.00 0.00 0.00 2.77
5801 7765 4.385358 AACTGAAAACATTCGCCTTTGT 57.615 36.364 0.00 0.00 0.00 2.83
5802 7766 3.705604 ACTGAAAACATTCGCCTTTGTG 58.294 40.909 0.00 0.00 0.00 3.33
5803 7767 3.052036 CTGAAAACATTCGCCTTTGTGG 58.948 45.455 0.00 0.00 39.35 4.17
5804 7768 2.428890 TGAAAACATTCGCCTTTGTGGT 59.571 40.909 0.00 0.00 38.35 4.16
5805 7769 2.793278 AAACATTCGCCTTTGTGGTC 57.207 45.000 0.00 0.00 38.35 4.02
5806 7770 1.981256 AACATTCGCCTTTGTGGTCT 58.019 45.000 0.00 0.00 38.35 3.85
5807 7771 1.238439 ACATTCGCCTTTGTGGTCTG 58.762 50.000 0.00 0.00 38.35 3.51
5808 7772 0.109597 CATTCGCCTTTGTGGTCTGC 60.110 55.000 0.00 0.00 38.35 4.26
5809 7773 0.537143 ATTCGCCTTTGTGGTCTGCA 60.537 50.000 0.00 0.00 38.35 4.41
5810 7774 1.444119 TTCGCCTTTGTGGTCTGCAC 61.444 55.000 0.00 0.00 38.35 4.57
5811 7775 2.186160 CGCCTTTGTGGTCTGCACA 61.186 57.895 0.00 0.00 38.35 4.57
5812 7776 1.360192 GCCTTTGTGGTCTGCACAC 59.640 57.895 0.00 0.00 39.26 3.82
5813 7777 2.032981 CCTTTGTGGTCTGCACACC 58.967 57.895 3.84 3.84 38.05 4.16
5814 7778 0.751277 CCTTTGTGGTCTGCACACCA 60.751 55.000 10.11 10.11 44.69 4.17
5818 7782 2.918248 TGGTCTGCACACCAAGCT 59.082 55.556 11.88 0.00 43.88 3.74
5819 7783 1.227102 TGGTCTGCACACCAAGCTT 59.773 52.632 11.88 0.00 43.88 3.74
5820 7784 0.395586 TGGTCTGCACACCAAGCTTT 60.396 50.000 11.88 0.00 43.88 3.51
5821 7785 0.746659 GGTCTGCACACCAAGCTTTT 59.253 50.000 6.23 0.00 36.32 2.27
5822 7786 1.536709 GGTCTGCACACCAAGCTTTTG 60.537 52.381 6.23 0.00 36.32 2.44
5823 7787 1.134946 GTCTGCACACCAAGCTTTTGT 59.865 47.619 0.00 0.00 0.00 2.83
5824 7788 1.134753 TCTGCACACCAAGCTTTTGTG 59.865 47.619 24.64 24.64 42.96 3.33
5825 7789 0.175302 TGCACACCAAGCTTTTGTGG 59.825 50.000 27.65 17.38 40.86 4.17
5826 7790 0.459489 GCACACCAAGCTTTTGTGGA 59.541 50.000 27.65 0.00 40.86 4.02
5827 7791 1.134848 GCACACCAAGCTTTTGTGGAA 60.135 47.619 27.65 0.00 40.86 3.53
5828 7792 2.539476 CACACCAAGCTTTTGTGGAAC 58.461 47.619 22.53 0.00 37.56 3.62
5841 7805 2.461416 TGGAACACACACACACACG 58.539 52.632 0.00 0.00 0.00 4.49
5842 7806 1.061887 GGAACACACACACACACGC 59.938 57.895 0.00 0.00 0.00 5.34
5843 7807 1.640210 GGAACACACACACACACGCA 61.640 55.000 0.00 0.00 0.00 5.24
5844 7808 0.520412 GAACACACACACACACGCAC 60.520 55.000 0.00 0.00 0.00 5.34
5845 7809 2.021243 CACACACACACACGCACG 59.979 61.111 0.00 0.00 0.00 5.34
5846 7810 3.860125 ACACACACACACGCACGC 61.860 61.111 0.00 0.00 0.00 5.34
5847 7811 3.858989 CACACACACACGCACGCA 61.859 61.111 0.00 0.00 0.00 5.24
5848 7812 3.860125 ACACACACACGCACGCAC 61.860 61.111 0.00 0.00 0.00 5.34
5849 7813 4.918060 CACACACACGCACGCACG 62.918 66.667 0.00 0.00 39.50 5.34
5859 7823 3.858989 CACGCACGCACACACACA 61.859 61.111 0.00 0.00 0.00 3.72
5860 7824 2.894879 ACGCACGCACACACACAT 60.895 55.556 0.00 0.00 0.00 3.21
5861 7825 2.425610 CGCACGCACACACACATG 60.426 61.111 0.00 0.00 0.00 3.21
5862 7826 2.726912 GCACGCACACACACATGC 60.727 61.111 0.00 0.00 38.52 4.06
5866 7830 2.726912 GCACACACACATGCGCAC 60.727 61.111 14.90 0.00 30.97 5.34
5867 7831 3.024784 CACACACACATGCGCACT 58.975 55.556 14.90 0.00 0.00 4.40
5868 7832 1.082561 CACACACACATGCGCACTC 60.083 57.895 14.90 0.00 0.00 3.51
5869 7833 1.523484 ACACACACATGCGCACTCA 60.523 52.632 14.90 0.00 0.00 3.41
5870 7834 1.205820 CACACACATGCGCACTCAG 59.794 57.895 14.90 5.75 0.00 3.35
5871 7835 1.962822 ACACACATGCGCACTCAGG 60.963 57.895 14.90 5.31 0.00 3.86
5872 7836 2.359107 ACACATGCGCACTCAGGG 60.359 61.111 14.90 7.00 0.00 4.45
5873 7837 2.359107 CACATGCGCACTCAGGGT 60.359 61.111 14.90 1.00 0.00 4.34
5874 7838 1.968017 CACATGCGCACTCAGGGTT 60.968 57.895 14.90 0.00 0.00 4.11
5875 7839 1.228245 ACATGCGCACTCAGGGTTT 60.228 52.632 14.90 0.00 0.00 3.27
5876 7840 1.237285 ACATGCGCACTCAGGGTTTC 61.237 55.000 14.90 0.00 0.00 2.78
5877 7841 0.957395 CATGCGCACTCAGGGTTTCT 60.957 55.000 14.90 0.00 0.00 2.52
5878 7842 0.957395 ATGCGCACTCAGGGTTTCTG 60.957 55.000 14.90 0.00 44.68 3.02
5890 7854 5.306532 CAGGGTTTCTGAACATTCTGATG 57.693 43.478 2.50 0.00 46.18 3.07
5891 7855 4.763793 CAGGGTTTCTGAACATTCTGATGT 59.236 41.667 2.50 0.00 46.18 3.06
5925 7889 9.787435 AAGGTACACAACATATTTTAACTGAGA 57.213 29.630 0.00 0.00 0.00 3.27
5926 7890 9.787435 AGGTACACAACATATTTTAACTGAGAA 57.213 29.630 0.00 0.00 0.00 2.87
5927 7891 9.821662 GGTACACAACATATTTTAACTGAGAAC 57.178 33.333 0.00 0.00 0.00 3.01
5930 7894 9.897744 ACACAACATATTTTAACTGAGAACATG 57.102 29.630 0.00 0.00 0.00 3.21
5933 7897 9.559958 CAACATATTTTAACTGAGAACATGACC 57.440 33.333 0.00 0.00 0.00 4.02
5934 7898 8.862325 ACATATTTTAACTGAGAACATGACCA 57.138 30.769 0.00 0.00 0.00 4.02
5935 7899 9.466497 ACATATTTTAACTGAGAACATGACCAT 57.534 29.630 0.00 0.00 0.00 3.55
5939 7903 7.815840 TTTAACTGAGAACATGACCATTTGA 57.184 32.000 0.00 0.00 0.00 2.69
5940 7904 5.954296 AACTGAGAACATGACCATTTGAG 57.046 39.130 0.00 0.00 0.00 3.02
5941 7905 4.330250 ACTGAGAACATGACCATTTGAGG 58.670 43.478 0.00 0.00 0.00 3.86
5942 7906 4.202503 ACTGAGAACATGACCATTTGAGGT 60.203 41.667 0.00 0.00 46.82 3.85
5949 7913 2.163454 ACCATTTGAGGTCTGCCCA 58.837 52.632 0.00 0.00 37.28 5.36
5950 7914 0.251341 ACCATTTGAGGTCTGCCCAC 60.251 55.000 0.00 0.00 37.28 4.61
5951 7915 0.251297 CCATTTGAGGTCTGCCCACA 60.251 55.000 0.00 0.00 34.66 4.17
5952 7916 1.619654 CATTTGAGGTCTGCCCACAA 58.380 50.000 0.00 0.00 41.38 3.33
5954 7918 1.691196 TTTGAGGTCTGCCCACAAAG 58.309 50.000 0.00 0.00 45.32 2.77
5955 7919 0.550914 TTGAGGTCTGCCCACAAAGT 59.449 50.000 0.00 0.00 40.34 2.66
5956 7920 0.179020 TGAGGTCTGCCCACAAAGTG 60.179 55.000 0.00 0.00 34.66 3.16
5957 7921 1.518903 GAGGTCTGCCCACAAAGTGC 61.519 60.000 0.00 0.00 34.66 4.40
5958 7922 1.529244 GGTCTGCCCACAAAGTGCT 60.529 57.895 0.00 0.00 31.34 4.40
5959 7923 0.250727 GGTCTGCCCACAAAGTGCTA 60.251 55.000 0.00 0.00 31.34 3.49
5960 7924 1.614317 GGTCTGCCCACAAAGTGCTAT 60.614 52.381 0.00 0.00 31.34 2.97
5961 7925 1.740025 GTCTGCCCACAAAGTGCTATC 59.260 52.381 0.00 0.00 31.34 2.08
5962 7926 1.350684 TCTGCCCACAAAGTGCTATCA 59.649 47.619 0.00 0.00 31.34 2.15
5963 7927 2.025981 TCTGCCCACAAAGTGCTATCAT 60.026 45.455 0.00 0.00 31.34 2.45
5964 7928 2.357009 CTGCCCACAAAGTGCTATCATC 59.643 50.000 0.00 0.00 31.34 2.92
5965 7929 2.290832 TGCCCACAAAGTGCTATCATCA 60.291 45.455 0.00 0.00 31.34 3.07
5966 7930 2.954318 GCCCACAAAGTGCTATCATCAT 59.046 45.455 0.00 0.00 31.34 2.45
5967 7931 3.382546 GCCCACAAAGTGCTATCATCATT 59.617 43.478 0.00 0.00 31.34 2.57
5968 7932 4.142093 GCCCACAAAGTGCTATCATCATTT 60.142 41.667 0.00 0.00 31.34 2.32
5969 7933 5.345702 CCCACAAAGTGCTATCATCATTTG 58.654 41.667 0.00 0.00 33.27 2.32
5970 7934 4.802039 CCACAAAGTGCTATCATCATTTGC 59.198 41.667 0.00 0.00 31.71 3.68
5971 7935 4.802039 CACAAAGTGCTATCATCATTTGCC 59.198 41.667 0.00 0.00 31.71 4.52
5972 7936 4.708421 ACAAAGTGCTATCATCATTTGCCT 59.292 37.500 0.00 0.00 31.71 4.75
5973 7937 5.186409 ACAAAGTGCTATCATCATTTGCCTT 59.814 36.000 0.00 0.00 31.71 4.35
5974 7938 5.927281 AAGTGCTATCATCATTTGCCTTT 57.073 34.783 0.00 0.00 0.00 3.11
5975 7939 7.093814 ACAAAGTGCTATCATCATTTGCCTTTA 60.094 33.333 0.00 0.00 31.71 1.85
5976 7940 7.592885 AAGTGCTATCATCATTTGCCTTTAT 57.407 32.000 0.00 0.00 0.00 1.40
5977 7941 7.592885 AGTGCTATCATCATTTGCCTTTATT 57.407 32.000 0.00 0.00 0.00 1.40
5978 7942 8.696043 AGTGCTATCATCATTTGCCTTTATTA 57.304 30.769 0.00 0.00 0.00 0.98
5979 7943 9.305555 AGTGCTATCATCATTTGCCTTTATTAT 57.694 29.630 0.00 0.00 0.00 1.28
5980 7944 9.565213 GTGCTATCATCATTTGCCTTTATTATC 57.435 33.333 0.00 0.00 0.00 1.75
5981 7945 9.299465 TGCTATCATCATTTGCCTTTATTATCA 57.701 29.630 0.00 0.00 0.00 2.15
5985 7949 8.765488 TCATCATTTGCCTTTATTATCAAGGA 57.235 30.769 9.18 0.00 43.32 3.36
5986 7950 8.632679 TCATCATTTGCCTTTATTATCAAGGAC 58.367 33.333 9.18 1.99 43.32 3.85
5987 7951 7.953005 TCATTTGCCTTTATTATCAAGGACA 57.047 32.000 9.18 4.30 43.32 4.02
5988 7952 8.537728 TCATTTGCCTTTATTATCAAGGACAT 57.462 30.769 9.18 0.00 43.32 3.06
5989 7953 8.415553 TCATTTGCCTTTATTATCAAGGACATG 58.584 33.333 9.18 7.16 43.32 3.21
5990 7954 7.953005 TTTGCCTTTATTATCAAGGACATGA 57.047 32.000 9.18 0.00 43.32 3.07
5991 7955 8.537728 TTTGCCTTTATTATCAAGGACATGAT 57.462 30.769 9.18 0.00 43.32 2.45
5992 7956 9.639563 TTTGCCTTTATTATCAAGGACATGATA 57.360 29.630 9.18 0.00 43.32 2.15
5993 7957 9.812347 TTGCCTTTATTATCAAGGACATGATAT 57.188 29.630 9.18 0.00 43.32 1.63
6002 7966 7.819521 ATCAAGGACATGATATATTGGAGGA 57.180 36.000 0.00 0.00 38.25 3.71
6003 7967 7.819521 TCAAGGACATGATATATTGGAGGAT 57.180 36.000 0.00 0.00 0.00 3.24
6004 7968 8.223378 TCAAGGACATGATATATTGGAGGATT 57.777 34.615 0.00 0.00 0.00 3.01
6005 7969 8.672329 TCAAGGACATGATATATTGGAGGATTT 58.328 33.333 0.00 0.00 0.00 2.17
6006 7970 9.305555 CAAGGACATGATATATTGGAGGATTTT 57.694 33.333 0.00 0.00 0.00 1.82
6007 7971 9.887862 AAGGACATGATATATTGGAGGATTTTT 57.112 29.630 0.00 0.00 0.00 1.94
6057 8021 4.751767 TTTTTGGCCTTTTCACTGTCAT 57.248 36.364 3.32 0.00 0.00 3.06
6058 8022 4.751767 TTTTGGCCTTTTCACTGTCATT 57.248 36.364 3.32 0.00 0.00 2.57
6059 8023 3.731652 TTGGCCTTTTCACTGTCATTG 57.268 42.857 3.32 0.00 0.00 2.82
6060 8024 2.665165 TGGCCTTTTCACTGTCATTGT 58.335 42.857 3.32 0.00 0.00 2.71
6061 8025 3.030291 TGGCCTTTTCACTGTCATTGTT 58.970 40.909 3.32 0.00 0.00 2.83
6062 8026 3.181477 TGGCCTTTTCACTGTCATTGTTG 60.181 43.478 3.32 0.00 0.00 3.33
6063 8027 3.383761 GCCTTTTCACTGTCATTGTTGG 58.616 45.455 0.00 0.00 0.00 3.77
6064 8028 3.383761 CCTTTTCACTGTCATTGTTGGC 58.616 45.455 0.00 0.00 0.00 4.52
6065 8029 3.068590 CCTTTTCACTGTCATTGTTGGCT 59.931 43.478 0.00 0.00 0.00 4.75
6066 8030 4.441913 CCTTTTCACTGTCATTGTTGGCTT 60.442 41.667 0.00 0.00 0.00 4.35
6067 8031 3.713858 TTCACTGTCATTGTTGGCTTG 57.286 42.857 0.00 0.00 0.00 4.01
6068 8032 1.337703 TCACTGTCATTGTTGGCTTGC 59.662 47.619 0.00 0.00 0.00 4.01
6069 8033 1.067364 CACTGTCATTGTTGGCTTGCA 59.933 47.619 0.00 0.00 0.00 4.08
6070 8034 1.338973 ACTGTCATTGTTGGCTTGCAG 59.661 47.619 0.00 0.00 0.00 4.41
6071 8035 0.032403 TGTCATTGTTGGCTTGCAGC 59.968 50.000 0.11 0.11 41.46 5.25
6072 8036 0.032403 GTCATTGTTGGCTTGCAGCA 59.968 50.000 9.78 0.00 44.75 4.41
6073 8037 0.970640 TCATTGTTGGCTTGCAGCAT 59.029 45.000 0.00 0.00 44.75 3.79
6074 8038 1.067425 TCATTGTTGGCTTGCAGCATC 60.067 47.619 0.00 0.00 44.75 3.91
6075 8039 1.067142 CATTGTTGGCTTGCAGCATCT 60.067 47.619 0.00 0.00 44.75 2.90
6076 8040 0.599558 TTGTTGGCTTGCAGCATCTC 59.400 50.000 0.00 0.00 44.75 2.75
6077 8041 0.251033 TGTTGGCTTGCAGCATCTCT 60.251 50.000 0.00 0.00 44.75 3.10
6078 8042 0.886563 GTTGGCTTGCAGCATCTCTT 59.113 50.000 0.00 0.00 44.75 2.85
6079 8043 1.135460 GTTGGCTTGCAGCATCTCTTC 60.135 52.381 0.00 0.00 44.75 2.87
6080 8044 0.327259 TGGCTTGCAGCATCTCTTCT 59.673 50.000 0.00 0.00 44.75 2.85
6081 8045 0.733729 GGCTTGCAGCATCTCTTCTG 59.266 55.000 0.00 0.00 44.75 3.02
6082 8046 1.678123 GGCTTGCAGCATCTCTTCTGA 60.678 52.381 0.00 0.00 44.75 3.27
6083 8047 2.082231 GCTTGCAGCATCTCTTCTGAA 58.918 47.619 0.00 0.00 41.89 3.02
6084 8048 2.683867 GCTTGCAGCATCTCTTCTGAAT 59.316 45.455 0.00 0.00 41.89 2.57
6085 8049 3.487711 GCTTGCAGCATCTCTTCTGAATG 60.488 47.826 0.00 0.00 41.89 2.67
6086 8050 2.640184 TGCAGCATCTCTTCTGAATGG 58.360 47.619 0.00 0.00 32.26 3.16
6087 8051 1.334243 GCAGCATCTCTTCTGAATGGC 59.666 52.381 0.00 0.00 32.26 4.40
6088 8052 1.948145 CAGCATCTCTTCTGAATGGCC 59.052 52.381 0.00 0.00 32.26 5.36
6089 8053 0.942962 GCATCTCTTCTGAATGGCCG 59.057 55.000 0.00 0.00 0.00 6.13
6090 8054 1.745141 GCATCTCTTCTGAATGGCCGT 60.745 52.381 0.00 0.00 0.00 5.68
6091 8055 2.636830 CATCTCTTCTGAATGGCCGTT 58.363 47.619 10.83 10.83 0.00 4.44
6092 8056 2.099141 TCTCTTCTGAATGGCCGTTG 57.901 50.000 16.85 1.15 0.00 4.10
6093 8057 0.449388 CTCTTCTGAATGGCCGTTGC 59.551 55.000 16.85 7.53 0.00 4.17
6094 8058 0.036732 TCTTCTGAATGGCCGTTGCT 59.963 50.000 16.85 0.00 37.74 3.91
6095 8059 0.449388 CTTCTGAATGGCCGTTGCTC 59.551 55.000 16.85 0.77 37.74 4.26
6096 8060 0.036732 TTCTGAATGGCCGTTGCTCT 59.963 50.000 16.85 0.00 37.74 4.09
6097 8061 0.901827 TCTGAATGGCCGTTGCTCTA 59.098 50.000 16.85 0.00 37.74 2.43
6098 8062 1.277842 TCTGAATGGCCGTTGCTCTAA 59.722 47.619 16.85 0.00 37.74 2.10
6099 8063 2.083774 CTGAATGGCCGTTGCTCTAAA 58.916 47.619 16.85 0.00 37.74 1.85
6100 8064 1.810151 TGAATGGCCGTTGCTCTAAAC 59.190 47.619 16.85 0.00 37.74 2.01
6101 8065 2.084546 GAATGGCCGTTGCTCTAAACT 58.915 47.619 16.85 0.00 37.74 2.66
6102 8066 2.200373 ATGGCCGTTGCTCTAAACTT 57.800 45.000 0.00 0.00 37.74 2.66
6103 8067 1.519408 TGGCCGTTGCTCTAAACTTC 58.481 50.000 0.00 0.00 37.74 3.01
6104 8068 0.442699 GGCCGTTGCTCTAAACTTCG 59.557 55.000 0.00 0.00 37.74 3.79
6105 8069 1.425412 GCCGTTGCTCTAAACTTCGA 58.575 50.000 0.00 0.00 33.53 3.71
6106 8070 2.000447 GCCGTTGCTCTAAACTTCGAT 59.000 47.619 0.00 0.00 33.53 3.59
6107 8071 3.184541 GCCGTTGCTCTAAACTTCGATA 58.815 45.455 0.00 0.00 33.53 2.92
6108 8072 3.000022 GCCGTTGCTCTAAACTTCGATAC 60.000 47.826 0.00 0.00 33.53 2.24
6109 8073 3.239941 CCGTTGCTCTAAACTTCGATACG 59.760 47.826 0.00 0.00 0.00 3.06
6110 8074 4.093514 CGTTGCTCTAAACTTCGATACGA 58.906 43.478 0.00 0.00 0.00 3.43
6111 8075 4.028670 CGTTGCTCTAAACTTCGATACGAC 60.029 45.833 0.00 0.00 34.89 4.34
6112 8076 3.677601 TGCTCTAAACTTCGATACGACG 58.322 45.455 0.00 0.00 34.89 5.12
6113 8077 3.125829 TGCTCTAAACTTCGATACGACGT 59.874 43.478 5.52 5.52 39.90 4.34
6114 8078 3.718377 GCTCTAAACTTCGATACGACGTC 59.282 47.826 2.43 5.18 37.37 4.34
6115 8079 4.493872 GCTCTAAACTTCGATACGACGTCT 60.494 45.833 14.70 0.00 37.37 4.18
6116 8080 5.136250 TCTAAACTTCGATACGACGTCTC 57.864 43.478 14.70 3.04 37.37 3.36
6117 8081 4.867047 TCTAAACTTCGATACGACGTCTCT 59.133 41.667 14.70 0.63 37.37 3.10
6118 8082 4.416505 AAACTTCGATACGACGTCTCTT 57.583 40.909 14.70 0.00 37.37 2.85
6119 8083 3.386613 ACTTCGATACGACGTCTCTTG 57.613 47.619 14.70 0.00 33.25 3.02
6120 8084 2.095532 ACTTCGATACGACGTCTCTTGG 59.904 50.000 14.70 0.00 33.25 3.61
6121 8085 0.376152 TCGATACGACGTCTCTTGGC 59.624 55.000 14.70 0.00 34.70 4.52
6122 8086 0.924363 CGATACGACGTCTCTTGGCG 60.924 60.000 14.70 6.05 0.00 5.69
6123 8087 0.376152 GATACGACGTCTCTTGGCGA 59.624 55.000 14.70 0.00 0.00 5.54
6124 8088 0.098376 ATACGACGTCTCTTGGCGAC 59.902 55.000 14.70 0.00 0.00 5.19
6125 8089 1.915614 TACGACGTCTCTTGGCGACC 61.916 60.000 14.70 0.00 0.00 4.79
6126 8090 2.649034 GACGTCTCTTGGCGACCA 59.351 61.111 8.70 0.00 0.00 4.02
6127 8091 1.733399 GACGTCTCTTGGCGACCAC 60.733 63.158 8.70 0.00 30.78 4.16
6128 8092 2.338620 CGTCTCTTGGCGACCACA 59.661 61.111 0.00 0.00 30.78 4.17
6129 8093 1.734477 CGTCTCTTGGCGACCACAG 60.734 63.158 0.00 0.00 30.78 3.66
6130 8094 1.367840 GTCTCTTGGCGACCACAGT 59.632 57.895 0.00 0.00 30.78 3.55
6131 8095 0.249911 GTCTCTTGGCGACCACAGTT 60.250 55.000 0.00 0.00 30.78 3.16
6132 8096 0.033504 TCTCTTGGCGACCACAGTTC 59.966 55.000 0.00 0.00 30.78 3.01
6133 8097 0.249868 CTCTTGGCGACCACAGTTCA 60.250 55.000 0.00 0.00 30.78 3.18
6134 8098 0.531974 TCTTGGCGACCACAGTTCAC 60.532 55.000 0.00 0.00 30.78 3.18
6135 8099 0.813610 CTTGGCGACCACAGTTCACA 60.814 55.000 0.00 0.00 30.78 3.58
6136 8100 0.393132 TTGGCGACCACAGTTCACAA 60.393 50.000 0.00 0.00 30.78 3.33
6137 8101 0.393132 TGGCGACCACAGTTCACAAA 60.393 50.000 0.00 0.00 0.00 2.83
6138 8102 0.307760 GGCGACCACAGTTCACAAAG 59.692 55.000 0.00 0.00 0.00 2.77
6139 8103 1.014352 GCGACCACAGTTCACAAAGT 58.986 50.000 0.00 0.00 0.00 2.66
6140 8104 1.400494 GCGACCACAGTTCACAAAGTT 59.600 47.619 0.00 0.00 0.00 2.66
6141 8105 2.791158 GCGACCACAGTTCACAAAGTTG 60.791 50.000 0.00 0.00 0.00 3.16
6142 8106 2.675844 CGACCACAGTTCACAAAGTTGA 59.324 45.455 0.00 0.00 0.00 3.18
6143 8107 3.485216 CGACCACAGTTCACAAAGTTGAC 60.485 47.826 0.00 0.00 0.00 3.18
6144 8108 3.686016 ACCACAGTTCACAAAGTTGACT 58.314 40.909 0.00 0.00 0.00 3.41
6145 8109 3.689649 ACCACAGTTCACAAAGTTGACTC 59.310 43.478 0.00 0.00 0.00 3.36
6146 8110 3.242413 CCACAGTTCACAAAGTTGACTCG 60.242 47.826 0.00 0.00 0.00 4.18
6147 8111 2.936498 ACAGTTCACAAAGTTGACTCGG 59.064 45.455 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.280428 CCATGCATTGCTAAATCAATTGGTTTA 59.720 33.333 20.07 20.07 34.68 2.01
2 3 5.587043 CCATGCATTGCTAAATCAATTGGTT 59.413 36.000 10.49 0.78 34.68 3.67
4 5 4.024387 GCCATGCATTGCTAAATCAATTGG 60.024 41.667 15.19 2.23 36.03 3.16
6 7 4.573201 GTGCCATGCATTGCTAAATCAATT 59.427 37.500 21.95 0.00 41.91 2.32
8 9 3.523547 GTGCCATGCATTGCTAAATCAA 58.476 40.909 21.95 0.00 41.91 2.57
9 10 2.479901 CGTGCCATGCATTGCTAAATCA 60.480 45.455 21.95 0.00 41.91 2.57
10 11 2.121786 CGTGCCATGCATTGCTAAATC 58.878 47.619 21.95 7.93 41.91 2.17
11 12 1.803625 GCGTGCCATGCATTGCTAAAT 60.804 47.619 21.95 0.00 41.91 1.40
12 13 0.458197 GCGTGCCATGCATTGCTAAA 60.458 50.000 21.95 0.85 41.91 1.85
13 14 1.139308 GCGTGCCATGCATTGCTAA 59.861 52.632 21.95 1.58 41.91 3.09
14 15 2.800053 GCGTGCCATGCATTGCTA 59.200 55.556 21.95 7.43 41.91 3.49
35 36 3.599343 AGCTCATGAATTTCACGCTACA 58.401 40.909 14.42 0.00 29.75 2.74
36 37 3.868077 AGAGCTCATGAATTTCACGCTAC 59.132 43.478 17.77 11.06 31.05 3.58
37 38 4.128925 AGAGCTCATGAATTTCACGCTA 57.871 40.909 17.77 0.00 31.05 4.26
38 39 2.983229 AGAGCTCATGAATTTCACGCT 58.017 42.857 17.77 15.41 32.74 5.07
43 44 5.048852 GGATGGCTAAGAGCTCATGAATTTC 60.049 44.000 17.77 5.14 41.99 2.17
44 45 4.826183 GGATGGCTAAGAGCTCATGAATTT 59.174 41.667 17.77 2.46 41.99 1.82
46 47 3.651904 AGGATGGCTAAGAGCTCATGAAT 59.348 43.478 17.77 1.36 41.99 2.57
47 48 3.044156 AGGATGGCTAAGAGCTCATGAA 58.956 45.455 17.77 0.00 41.99 2.57
48 49 2.687297 AGGATGGCTAAGAGCTCATGA 58.313 47.619 17.77 0.00 41.99 3.07
49 50 4.222366 TCATAGGATGGCTAAGAGCTCATG 59.778 45.833 17.77 6.22 41.99 3.07
50 51 4.423913 TCATAGGATGGCTAAGAGCTCAT 58.576 43.478 17.77 6.59 41.99 2.90
51 52 3.849527 TCATAGGATGGCTAAGAGCTCA 58.150 45.455 17.77 0.00 41.99 4.26
52 53 4.757594 CATCATAGGATGGCTAAGAGCTC 58.242 47.826 9.53 5.27 45.84 4.09
53 54 4.822685 CATCATAGGATGGCTAAGAGCT 57.177 45.455 9.53 0.00 45.84 4.09
65 66 8.037166 CCGAATCAAGTGAATATCATCATAGGA 58.963 37.037 0.00 0.00 0.00 2.94
67 68 8.992835 TCCGAATCAAGTGAATATCATCATAG 57.007 34.615 0.00 0.00 0.00 2.23
68 69 9.777297 TTTCCGAATCAAGTGAATATCATCATA 57.223 29.630 0.00 0.00 0.00 2.15
69 70 8.681486 TTTCCGAATCAAGTGAATATCATCAT 57.319 30.769 0.00 0.00 0.00 2.45
70 71 8.681486 ATTTCCGAATCAAGTGAATATCATCA 57.319 30.769 0.00 0.00 0.00 3.07
72 73 9.559732 TGTATTTCCGAATCAAGTGAATATCAT 57.440 29.630 0.00 0.00 0.00 2.45
73 74 8.956533 TGTATTTCCGAATCAAGTGAATATCA 57.043 30.769 0.00 0.00 0.00 2.15
76 77 9.226606 ACTTTGTATTTCCGAATCAAGTGAATA 57.773 29.630 0.00 0.00 0.00 1.75
77 78 8.110860 ACTTTGTATTTCCGAATCAAGTGAAT 57.889 30.769 0.00 0.00 0.00 2.57
79 80 8.786826 ATACTTTGTATTTCCGAATCAAGTGA 57.213 30.769 0.00 0.00 0.00 3.41
84 85 9.661563 AGTGTTATACTTTGTATTTCCGAATCA 57.338 29.630 0.00 0.00 35.67 2.57
86 87 9.661563 TGAGTGTTATACTTTGTATTTCCGAAT 57.338 29.630 0.00 0.00 40.53 3.34
87 88 9.491675 TTGAGTGTTATACTTTGTATTTCCGAA 57.508 29.630 0.00 0.00 40.53 4.30
89 90 8.932791 AGTTGAGTGTTATACTTTGTATTTCCG 58.067 33.333 0.00 0.00 40.53 4.30
108 1395 4.344104 CCCATGGTGGAAAATAGTTGAGT 58.656 43.478 11.73 0.00 40.96 3.41
117 1404 0.478942 TCGTTCCCCATGGTGGAAAA 59.521 50.000 26.88 18.69 43.24 2.29
123 1410 0.034477 GTTGGATCGTTCCCCATGGT 60.034 55.000 11.73 0.00 41.83 3.55
134 1421 3.552604 ATTGAAAACACGGTTGGATCG 57.447 42.857 0.00 0.00 0.00 3.69
135 1422 5.673818 GCTCTATTGAAAACACGGTTGGATC 60.674 44.000 0.00 0.00 0.00 3.36
142 1429 4.944962 TCATGCTCTATTGAAAACACGG 57.055 40.909 0.00 0.00 0.00 4.94
146 1433 4.913376 ACGCATCATGCTCTATTGAAAAC 58.087 39.130 8.30 0.00 42.25 2.43
147 1434 4.035558 GGACGCATCATGCTCTATTGAAAA 59.964 41.667 8.30 0.00 42.25 2.29
148 1435 3.561310 GGACGCATCATGCTCTATTGAAA 59.439 43.478 8.30 0.00 42.25 2.69
149 1436 3.133691 GGACGCATCATGCTCTATTGAA 58.866 45.455 8.30 0.00 42.25 2.69
150 1437 2.102925 TGGACGCATCATGCTCTATTGA 59.897 45.455 8.30 0.00 42.25 2.57
151 1438 2.486918 TGGACGCATCATGCTCTATTG 58.513 47.619 8.30 0.00 42.25 1.90
152 1439 2.916702 TGGACGCATCATGCTCTATT 57.083 45.000 8.30 0.00 42.25 1.73
176 1463 0.522705 CCACGGTATCACGTCACTCG 60.523 60.000 0.00 0.00 46.75 4.18
184 1471 4.696402 TGTTAATGTTTCCCACGGTATCAC 59.304 41.667 0.00 0.00 0.00 3.06
185 1472 4.907809 TGTTAATGTTTCCCACGGTATCA 58.092 39.130 0.00 0.00 0.00 2.15
186 1473 5.277154 CGATGTTAATGTTTCCCACGGTATC 60.277 44.000 0.00 0.00 0.00 2.24
197 1484 3.822594 TTGCGCTCGATGTTAATGTTT 57.177 38.095 9.73 0.00 0.00 2.83
229 1516 5.103000 CCGTCGAATCAGTTAGATGTTCTT 58.897 41.667 0.00 0.00 36.96 2.52
231 1518 4.669318 TCCGTCGAATCAGTTAGATGTTC 58.331 43.478 0.00 0.00 36.96 3.18
245 1532 5.231702 TGTATGAAGTTTTGATCCGTCGAA 58.768 37.500 0.00 0.00 0.00 3.71
251 1538 5.505286 CGAGCATGTATGAAGTTTTGATCC 58.495 41.667 0.00 0.00 0.00 3.36
255 1542 4.337763 GAGCGAGCATGTATGAAGTTTTG 58.662 43.478 0.00 0.00 0.00 2.44
256 1543 3.062639 CGAGCGAGCATGTATGAAGTTTT 59.937 43.478 0.00 0.00 0.00 2.43
261 1548 2.800881 ATCGAGCGAGCATGTATGAA 57.199 45.000 0.00 0.00 0.00 2.57
265 1552 2.616842 TGTAGAATCGAGCGAGCATGTA 59.383 45.455 0.00 0.00 0.00 2.29
268 1555 2.464865 GTTGTAGAATCGAGCGAGCAT 58.535 47.619 0.00 0.00 0.00 3.79
293 1580 3.259064 GTCGTATGTGGTATGTGCAAGT 58.741 45.455 0.00 0.00 0.00 3.16
306 1593 2.184322 CGGGCAGCTGTCGTATGT 59.816 61.111 16.64 0.00 0.00 2.29
317 1604 1.206578 CTTTTACACGCACGGGCAG 59.793 57.895 11.77 3.43 41.24 4.85
324 1611 3.182972 GTCTTTACGAGCTTTTACACGCA 59.817 43.478 0.00 0.00 0.00 5.24
355 1642 7.011669 TGCTATTTAATTTAACTGTCCGCTACC 59.988 37.037 0.00 0.00 0.00 3.18
376 1663 5.247564 TGTTACTGGTCCTACTTGTTGCTAT 59.752 40.000 0.00 0.00 0.00 2.97
383 1670 4.330944 TGTGTGTTACTGGTCCTACTTG 57.669 45.455 0.00 0.00 0.00 3.16
384 1671 5.362105 TTTGTGTGTTACTGGTCCTACTT 57.638 39.130 0.00 0.00 0.00 2.24
394 1681 7.312899 GGCTTTATTATGCTTTGTGTGTTACT 58.687 34.615 0.00 0.00 0.00 2.24
396 1683 6.435904 AGGGCTTTATTATGCTTTGTGTGTTA 59.564 34.615 0.00 0.00 0.00 2.41
436 1778 5.793817 TGTAGTGTGCAAATGAGTAGACAT 58.206 37.500 0.00 0.00 0.00 3.06
469 1811 7.075121 ACATTTTTGTACGTACATGATGTGTG 58.925 34.615 30.45 23.17 42.24 3.82
470 1812 7.197071 ACATTTTTGTACGTACATGATGTGT 57.803 32.000 30.45 25.28 44.95 3.72
500 1843 5.125417 CGGTGGATCAGATTTGGTAAAATGT 59.875 40.000 0.00 0.00 36.10 2.71
515 1858 5.973899 TTGAATTTGAATTCGGTGGATCA 57.026 34.783 10.81 0.00 46.01 2.92
543 1886 1.063341 AGGTGCATGCCTCTCTCTAGA 60.063 52.381 16.68 0.00 32.39 2.43
544 1887 1.068895 CAGGTGCATGCCTCTCTCTAG 59.931 57.143 16.68 0.00 36.58 2.43
545 1888 1.117994 CAGGTGCATGCCTCTCTCTA 58.882 55.000 16.68 0.00 36.58 2.43
558 1901 1.880027 AGTTCAAAATCGACCAGGTGC 59.120 47.619 0.00 0.00 0.00 5.01
574 1917 5.189145 TGGGGTCTTAATTCTGGTCTAGTTC 59.811 44.000 0.00 0.00 0.00 3.01
578 1921 4.955335 TCTGGGGTCTTAATTCTGGTCTA 58.045 43.478 0.00 0.00 0.00 2.59
579 1922 3.803340 TCTGGGGTCTTAATTCTGGTCT 58.197 45.455 0.00 0.00 0.00 3.85
612 1959 1.604915 GTTCCTCCTCTTCTGCCCC 59.395 63.158 0.00 0.00 0.00 5.80
702 2050 1.227943 TCTCCTGTTGGCTGTGTGC 60.228 57.895 0.00 0.00 41.94 4.57
703 2051 0.604780 CCTCTCCTGTTGGCTGTGTG 60.605 60.000 0.00 0.00 0.00 3.82
704 2052 0.764369 TCCTCTCCTGTTGGCTGTGT 60.764 55.000 0.00 0.00 0.00 3.72
705 2053 0.036577 CTCCTCTCCTGTTGGCTGTG 60.037 60.000 0.00 0.00 0.00 3.66
706 2054 0.178921 TCTCCTCTCCTGTTGGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
806 2158 0.631998 TGGGAGGGAGAGAGAGGGAT 60.632 60.000 0.00 0.00 0.00 3.85
807 2159 0.631998 ATGGGAGGGAGAGAGAGGGA 60.632 60.000 0.00 0.00 0.00 4.20
808 2160 0.178935 GATGGGAGGGAGAGAGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
809 2161 0.539438 CGATGGGAGGGAGAGAGAGG 60.539 65.000 0.00 0.00 0.00 3.69
810 2162 0.476338 TCGATGGGAGGGAGAGAGAG 59.524 60.000 0.00 0.00 0.00 3.20
811 2163 0.476338 CTCGATGGGAGGGAGAGAGA 59.524 60.000 0.00 0.00 39.22 3.10
812 2164 3.034924 CTCGATGGGAGGGAGAGAG 57.965 63.158 0.00 0.00 39.22 3.20
859 2224 4.880537 CGCCTCGCTGCTACTGGG 62.881 72.222 0.00 0.00 0.00 4.45
910 2651 1.051556 GGCTCCTTCCTCCCCACTAG 61.052 65.000 0.00 0.00 0.00 2.57
945 2686 1.829666 GCCTAGATCTCCCTCCCTTCC 60.830 61.905 0.00 0.00 0.00 3.46
946 2687 1.639722 GCCTAGATCTCCCTCCCTTC 58.360 60.000 0.00 0.00 0.00 3.46
947 2688 0.178947 CGCCTAGATCTCCCTCCCTT 60.179 60.000 0.00 0.00 0.00 3.95
948 2689 1.462928 CGCCTAGATCTCCCTCCCT 59.537 63.158 0.00 0.00 0.00 4.20
949 2690 1.608046 CCGCCTAGATCTCCCTCCC 60.608 68.421 0.00 0.00 0.00 4.30
950 2691 2.279810 GCCGCCTAGATCTCCCTCC 61.280 68.421 0.00 0.00 0.00 4.30
951 2692 2.631580 CGCCGCCTAGATCTCCCTC 61.632 68.421 0.00 0.00 0.00 4.30
952 2693 2.598985 CGCCGCCTAGATCTCCCT 60.599 66.667 0.00 0.00 0.00 4.20
953 2694 3.686045 CCGCCGCCTAGATCTCCC 61.686 72.222 0.00 0.00 0.00 4.30
954 2695 2.597805 TCCGCCGCCTAGATCTCC 60.598 66.667 0.00 0.00 0.00 3.71
1254 3000 2.045340 CGAGAAATTGGCCGGGGT 60.045 61.111 2.18 0.00 0.00 4.95
1255 3001 3.518068 GCGAGAAATTGGCCGGGG 61.518 66.667 2.18 0.00 0.00 5.73
1853 3633 5.634020 GTGAGTAACAGACATACAGTGGAAC 59.366 44.000 0.00 0.00 0.00 3.62
1996 3780 3.255395 TGATTGCATACAACACACTTGGG 59.745 43.478 0.00 0.00 38.99 4.12
2050 3919 9.734984 GCTACCTACATTACCATATACCAAATT 57.265 33.333 0.00 0.00 0.00 1.82
2086 3955 6.773685 ACTAACCCAAACAATTAGCAACAGTA 59.226 34.615 0.00 0.00 30.45 2.74
2151 4021 4.156455 AGGCATAACTAATCACCTGTGG 57.844 45.455 0.00 0.00 0.00 4.17
2211 4081 6.257423 TCGTGCAATAATCACATTCATGAAC 58.743 36.000 11.07 0.00 34.27 3.18
2276 4146 5.256806 AGGTACTTTGCCAAGGATAAACT 57.743 39.130 2.22 0.00 27.25 2.66
2452 4323 3.047695 TCTCCCCTGAGAAGGATAACC 57.952 52.381 0.00 0.00 44.62 2.85
3076 4959 2.200373 AGGTCAAGCGCCTACAAAAT 57.800 45.000 2.29 0.00 33.97 1.82
3350 5233 6.426937 GCAGAACAACTAGTTGGTGAGAATTA 59.573 38.462 33.11 0.00 41.20 1.40
3354 5237 3.388024 AGCAGAACAACTAGTTGGTGAGA 59.612 43.478 33.11 0.00 41.20 3.27
3372 5255 4.455533 TGTACTAGTTGGAATTTGCAGCAG 59.544 41.667 0.00 5.44 0.00 4.24
3421 5304 3.375299 AGTTCTGTTGCACTGAAGACAAC 59.625 43.478 11.50 11.50 43.10 3.32
3515 5399 8.792633 GCTGCATATATGGTTTAACAGGATAAA 58.207 33.333 14.51 0.00 0.00 1.40
3525 5409 7.123397 TGGAAACAAAGCTGCATATATGGTTTA 59.877 33.333 14.51 0.00 37.44 2.01
3684 5594 6.932356 ATGTTCATAATCACACATCTGTCC 57.068 37.500 0.00 0.00 0.00 4.02
3725 5635 4.464597 TGCCAATTATACAAAGTCCCAACC 59.535 41.667 0.00 0.00 0.00 3.77
3854 5764 3.779183 TCAGGCTGGAAAGAGAGATGATT 59.221 43.478 15.73 0.00 0.00 2.57
3860 5770 2.630158 CATGTCAGGCTGGAAAGAGAG 58.370 52.381 15.73 0.00 0.00 3.20
3915 5825 7.205992 TCTTCCAGATCAGAAATACGAGAATG 58.794 38.462 0.00 0.00 0.00 2.67
3952 5870 1.003839 GTCCATGTGCTGTTCGGGA 60.004 57.895 0.00 0.00 0.00 5.14
3988 5906 2.358737 GGACCCCGAGCAACAGTG 60.359 66.667 0.00 0.00 0.00 3.66
3989 5907 2.847234 TGGACCCCGAGCAACAGT 60.847 61.111 0.00 0.00 0.00 3.55
4038 5957 6.486657 AGTGCATCTACAACAAAGTGTATGTT 59.513 34.615 0.00 0.00 41.50 2.71
4052 5971 7.452880 AAGCAAAAGAATAAGTGCATCTACA 57.547 32.000 0.00 0.00 39.50 2.74
4112 6055 1.819288 TGAGAGAGTGAATCCGTCCAC 59.181 52.381 0.00 0.00 0.00 4.02
4176 6119 5.316327 AGAACTATTTAAGCAGGCAAAGC 57.684 39.130 0.00 0.00 0.00 3.51
4385 6328 8.700973 TCATATGTATTGGCAAGTAGTCTTACA 58.299 33.333 5.96 7.99 32.07 2.41
4392 6335 7.134815 GCAAAGTCATATGTATTGGCAAGTAG 58.865 38.462 5.96 0.00 0.00 2.57
4510 6453 6.074195 TGTGTAACACAAATACTCGCTGTTAC 60.074 38.462 11.01 11.01 45.67 2.50
4531 6474 5.398603 TCCAAACATTCAAAAGTGTGTGT 57.601 34.783 0.00 0.00 32.79 3.72
4627 6570 6.580791 TCGTAAAATCTTTGGATTGAAAAGCG 59.419 34.615 0.00 0.00 40.86 4.68
4696 6639 2.746375 CCCCAGTCATTCCCCCGAG 61.746 68.421 0.00 0.00 0.00 4.63
4699 6642 0.701310 ATACCCCCAGTCATTCCCCC 60.701 60.000 0.00 0.00 0.00 5.40
4700 6643 1.133482 CAATACCCCCAGTCATTCCCC 60.133 57.143 0.00 0.00 0.00 4.81
4822 6766 4.549458 CACTGTGTTAAATCAGCTTTGGG 58.451 43.478 0.00 0.00 35.37 4.12
4830 6774 5.129634 TCTCAAAGCCACTGTGTTAAATCA 58.870 37.500 7.08 0.00 0.00 2.57
4854 6798 4.980434 GTGTAAGTCTCAAGTTTCACGCTA 59.020 41.667 0.00 0.00 29.88 4.26
4857 6801 5.968387 AAGTGTAAGTCTCAAGTTTCACG 57.032 39.130 0.00 0.00 39.66 4.35
4871 6815 4.980590 TGTGCACAACTCAAAAGTGTAAG 58.019 39.130 19.28 0.00 35.36 2.34
4958 6902 2.489275 CCTGCCAAGCACCACGTTT 61.489 57.895 0.00 0.00 33.79 3.60
4991 6935 1.881903 CTGCTCTCCTTGCGTCCTCA 61.882 60.000 0.00 0.00 0.00 3.86
5248 7195 0.532417 TGCCACTGGTTGCAAAATGC 60.532 50.000 0.00 0.00 45.29 3.56
5249 7196 1.202557 ACTGCCACTGGTTGCAAAATG 60.203 47.619 0.00 0.00 36.98 2.32
5250 7197 1.122227 ACTGCCACTGGTTGCAAAAT 58.878 45.000 0.00 0.00 36.98 1.82
5251 7198 1.680735 CTACTGCCACTGGTTGCAAAA 59.319 47.619 0.00 0.00 36.98 2.44
5252 7199 1.317613 CTACTGCCACTGGTTGCAAA 58.682 50.000 0.00 0.00 36.98 3.68
5253 7200 0.537143 CCTACTGCCACTGGTTGCAA 60.537 55.000 0.00 0.00 36.98 4.08
5254 7201 1.073025 CCTACTGCCACTGGTTGCA 59.927 57.895 0.00 0.00 35.86 4.08
5480 7429 4.832248 TGCGAAACACCAGATATTCTCTT 58.168 39.130 0.00 0.00 29.16 2.85
5482 7431 3.001736 GCTGCGAAACACCAGATATTCTC 59.998 47.826 0.00 0.00 0.00 2.87
5486 7435 2.698855 AGCTGCGAAACACCAGATAT 57.301 45.000 0.00 0.00 0.00 1.63
5489 7438 0.662619 CAAAGCTGCGAAACACCAGA 59.337 50.000 0.00 0.00 0.00 3.86
5490 7439 0.662619 TCAAAGCTGCGAAACACCAG 59.337 50.000 0.00 0.00 0.00 4.00
5491 7440 1.098869 TTCAAAGCTGCGAAACACCA 58.901 45.000 0.00 0.00 0.00 4.17
5492 7441 1.065551 AGTTCAAAGCTGCGAAACACC 59.934 47.619 0.00 0.00 0.00 4.16
5493 7442 2.111756 CAGTTCAAAGCTGCGAAACAC 58.888 47.619 0.00 0.00 0.00 3.32
5494 7443 2.473530 CAGTTCAAAGCTGCGAAACA 57.526 45.000 0.00 0.00 0.00 2.83
5501 7450 2.149578 AGCACTAGCAGTTCAAAGCTG 58.850 47.619 0.00 0.00 45.49 4.24
5516 7465 1.561076 TGCCTGATGAACCATAGCACT 59.439 47.619 0.00 0.00 0.00 4.40
5517 7466 2.042686 TGCCTGATGAACCATAGCAC 57.957 50.000 0.00 0.00 0.00 4.40
5518 7467 3.301794 AATGCCTGATGAACCATAGCA 57.698 42.857 0.00 0.00 32.09 3.49
5519 7468 3.005155 GGAAATGCCTGATGAACCATAGC 59.995 47.826 0.00 0.00 0.00 2.97
5520 7469 4.843220 GGAAATGCCTGATGAACCATAG 57.157 45.455 0.00 0.00 0.00 2.23
5538 7487 2.821969 GGCAATGCAAAGAGAAGAGGAA 59.178 45.455 7.79 0.00 0.00 3.36
5544 7493 2.294233 GACACTGGCAATGCAAAGAGAA 59.706 45.455 7.79 0.00 0.00 2.87
5548 7497 1.933500 GCAGACACTGGCAATGCAAAG 60.934 52.381 7.79 6.59 36.88 2.77
5555 7504 1.072173 ACACATAGCAGACACTGGCAA 59.928 47.619 0.00 0.00 31.21 4.52
5559 7508 2.926200 GCTACACACATAGCAGACACTG 59.074 50.000 0.00 0.00 45.83 3.66
5569 7518 2.615240 CCTTGGTGCAGCTACACACATA 60.615 50.000 18.65 3.23 42.55 2.29
5570 7519 1.527034 CTTGGTGCAGCTACACACAT 58.473 50.000 18.65 0.00 42.55 3.21
5572 7521 1.237285 CCCTTGGTGCAGCTACACAC 61.237 60.000 18.65 11.66 42.55 3.82
5573 7522 1.073025 CCCTTGGTGCAGCTACACA 59.927 57.895 18.65 2.55 42.55 3.72
5574 7523 1.073199 ACCCTTGGTGCAGCTACAC 59.927 57.895 18.08 8.69 39.94 2.90
5575 7524 3.574952 ACCCTTGGTGCAGCTACA 58.425 55.556 18.08 0.06 32.98 2.74
5607 7560 2.241176 TGTCATCTTCAATGGTACCCCC 59.759 50.000 10.07 0.00 0.00 5.40
5626 7580 2.710096 AGTTGTACAGCACAGGTTGT 57.290 45.000 12.54 0.00 41.63 3.32
5638 7592 6.929606 ACAATGAGAAGACCAGTTAGTTGTAC 59.070 38.462 0.00 0.00 0.00 2.90
5670 7624 2.755952 TCCTGGAGCATACTAGCTGA 57.244 50.000 0.00 0.00 46.75 4.26
5680 7634 6.916360 AAATCACTTAAAAATCCTGGAGCA 57.084 33.333 1.52 0.00 0.00 4.26
5694 7648 9.081997 CACAAAAACAACTGCTTAAATCACTTA 57.918 29.630 0.00 0.00 0.00 2.24
5704 7658 6.652900 ACCAATAAACACAAAAACAACTGCTT 59.347 30.769 0.00 0.00 0.00 3.91
5705 7659 6.091986 CACCAATAAACACAAAAACAACTGCT 59.908 34.615 0.00 0.00 0.00 4.24
5706 7660 6.091441 TCACCAATAAACACAAAAACAACTGC 59.909 34.615 0.00 0.00 0.00 4.40
5707 7661 7.588143 TCACCAATAAACACAAAAACAACTG 57.412 32.000 0.00 0.00 0.00 3.16
5708 7662 7.279758 CCATCACCAATAAACACAAAAACAACT 59.720 33.333 0.00 0.00 0.00 3.16
5709 7663 7.405769 CCATCACCAATAAACACAAAAACAAC 58.594 34.615 0.00 0.00 0.00 3.32
5710 7664 6.540189 CCCATCACCAATAAACACAAAAACAA 59.460 34.615 0.00 0.00 0.00 2.83
5711 7665 6.051717 CCCATCACCAATAAACACAAAAACA 58.948 36.000 0.00 0.00 0.00 2.83
5712 7666 5.049749 GCCCATCACCAATAAACACAAAAAC 60.050 40.000 0.00 0.00 0.00 2.43
5736 7700 8.905103 TTTAAGGAAAGTTCGAAGAAACAAAG 57.095 30.769 0.00 0.00 45.90 2.77
5775 7739 7.332182 ACAAAGGCGAATGTTTTCAGTTAAAAA 59.668 29.630 0.00 0.00 38.76 1.94
5776 7740 6.814146 ACAAAGGCGAATGTTTTCAGTTAAAA 59.186 30.769 0.00 0.00 34.66 1.52
5777 7741 6.254589 CACAAAGGCGAATGTTTTCAGTTAAA 59.745 34.615 0.00 0.00 0.00 1.52
5778 7742 5.746245 CACAAAGGCGAATGTTTTCAGTTAA 59.254 36.000 0.00 0.00 0.00 2.01
5779 7743 5.277825 CACAAAGGCGAATGTTTTCAGTTA 58.722 37.500 0.00 0.00 0.00 2.24
5780 7744 4.111916 CACAAAGGCGAATGTTTTCAGTT 58.888 39.130 0.00 0.00 0.00 3.16
5781 7745 3.490761 CCACAAAGGCGAATGTTTTCAGT 60.491 43.478 0.00 0.00 0.00 3.41
5782 7746 3.052036 CCACAAAGGCGAATGTTTTCAG 58.948 45.455 0.00 0.00 0.00 3.02
5783 7747 2.428890 ACCACAAAGGCGAATGTTTTCA 59.571 40.909 0.00 0.00 43.14 2.69
5784 7748 3.049912 GACCACAAAGGCGAATGTTTTC 58.950 45.455 0.00 0.00 43.14 2.29
5785 7749 2.693074 AGACCACAAAGGCGAATGTTTT 59.307 40.909 0.00 0.00 43.14 2.43
5786 7750 2.034558 CAGACCACAAAGGCGAATGTTT 59.965 45.455 0.00 0.00 43.14 2.83
5787 7751 1.608590 CAGACCACAAAGGCGAATGTT 59.391 47.619 0.00 0.00 43.14 2.71
5788 7752 1.238439 CAGACCACAAAGGCGAATGT 58.762 50.000 0.00 0.00 43.14 2.71
5789 7753 0.109597 GCAGACCACAAAGGCGAATG 60.110 55.000 0.00 0.00 43.14 2.67
5790 7754 0.537143 TGCAGACCACAAAGGCGAAT 60.537 50.000 0.00 0.00 43.14 3.34
5791 7755 1.153066 TGCAGACCACAAAGGCGAA 60.153 52.632 0.00 0.00 43.14 4.70
5792 7756 1.891919 GTGCAGACCACAAAGGCGA 60.892 57.895 0.00 0.00 44.06 5.54
5793 7757 2.639286 GTGCAGACCACAAAGGCG 59.361 61.111 0.00 0.00 44.06 5.52
5800 7764 1.103398 AAGCTTGGTGTGCAGACCAC 61.103 55.000 33.58 23.09 46.03 4.16
5801 7765 0.395586 AAAGCTTGGTGTGCAGACCA 60.396 50.000 30.51 30.51 44.64 4.02
5802 7766 0.746659 AAAAGCTTGGTGTGCAGACC 59.253 50.000 25.63 25.63 36.43 3.85
5803 7767 1.134946 ACAAAAGCTTGGTGTGCAGAC 59.865 47.619 13.72 5.20 36.82 3.51
5804 7768 1.134753 CACAAAAGCTTGGTGTGCAGA 59.865 47.619 23.26 0.00 36.55 4.26
5805 7769 1.563111 CACAAAAGCTTGGTGTGCAG 58.437 50.000 23.26 7.47 36.55 4.41
5806 7770 0.175302 CCACAAAAGCTTGGTGTGCA 59.825 50.000 26.90 0.00 41.06 4.57
5807 7771 0.459489 TCCACAAAAGCTTGGTGTGC 59.541 50.000 26.90 0.00 41.06 4.57
5808 7772 2.094286 TGTTCCACAAAAGCTTGGTGTG 60.094 45.455 25.97 25.97 41.86 3.82
5809 7773 2.094234 GTGTTCCACAAAAGCTTGGTGT 60.094 45.455 22.68 16.94 36.82 4.16
5810 7774 2.094286 TGTGTTCCACAAAAGCTTGGTG 60.094 45.455 19.48 19.48 41.69 4.17
5811 7775 2.094234 GTGTGTTCCACAAAAGCTTGGT 60.094 45.455 0.00 0.00 46.28 3.67
5812 7776 2.539476 GTGTGTTCCACAAAAGCTTGG 58.461 47.619 0.00 0.00 46.28 3.61
5822 7786 0.096281 CGTGTGTGTGTGTGTTCCAC 59.904 55.000 0.00 0.00 44.78 4.02
5823 7787 1.640210 GCGTGTGTGTGTGTGTTCCA 61.640 55.000 0.00 0.00 0.00 3.53
5824 7788 1.061887 GCGTGTGTGTGTGTGTTCC 59.938 57.895 0.00 0.00 0.00 3.62
5825 7789 0.520412 GTGCGTGTGTGTGTGTGTTC 60.520 55.000 0.00 0.00 0.00 3.18
5826 7790 1.499949 GTGCGTGTGTGTGTGTGTT 59.500 52.632 0.00 0.00 0.00 3.32
5827 7791 2.735677 CGTGCGTGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
5828 7792 2.021243 CGTGCGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
5829 7793 3.860125 GCGTGCGTGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
5830 7794 3.858989 TGCGTGCGTGTGTGTGTG 61.859 61.111 0.00 0.00 0.00 3.82
5831 7795 3.860125 GTGCGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 0.00 3.72
5832 7796 4.918060 CGTGCGTGCGTGTGTGTG 62.918 66.667 0.00 0.00 0.00 3.82
5842 7806 3.166953 ATGTGTGTGTGCGTGCGTG 62.167 57.895 0.00 0.00 0.00 5.34
5843 7807 2.894879 ATGTGTGTGTGCGTGCGT 60.895 55.556 0.00 0.00 0.00 5.24
5844 7808 2.425610 CATGTGTGTGTGCGTGCG 60.426 61.111 0.00 0.00 0.00 5.34
5845 7809 2.726912 GCATGTGTGTGTGCGTGC 60.727 61.111 0.00 0.00 39.89 5.34
5850 7814 1.082561 GAGTGCGCATGTGTGTGTG 60.083 57.895 15.91 0.00 38.13 3.82
5851 7815 1.501337 CTGAGTGCGCATGTGTGTGT 61.501 55.000 15.91 0.00 38.13 3.72
5852 7816 1.205820 CTGAGTGCGCATGTGTGTG 59.794 57.895 15.91 0.00 38.87 3.82
5853 7817 1.962822 CCTGAGTGCGCATGTGTGT 60.963 57.895 15.91 0.00 0.00 3.72
5854 7818 2.683859 CCCTGAGTGCGCATGTGTG 61.684 63.158 15.91 2.43 0.00 3.82
5855 7819 2.359107 CCCTGAGTGCGCATGTGT 60.359 61.111 15.91 0.00 0.00 3.72
5856 7820 1.518056 AAACCCTGAGTGCGCATGTG 61.518 55.000 15.91 0.66 0.00 3.21
5857 7821 1.228245 AAACCCTGAGTGCGCATGT 60.228 52.632 15.91 3.51 0.00 3.21
5858 7822 0.957395 AGAAACCCTGAGTGCGCATG 60.957 55.000 15.91 4.42 0.00 4.06
5859 7823 0.957395 CAGAAACCCTGAGTGCGCAT 60.957 55.000 15.91 1.95 45.78 4.73
5860 7824 1.597854 CAGAAACCCTGAGTGCGCA 60.598 57.895 5.66 5.66 45.78 6.09
5861 7825 1.301716 TCAGAAACCCTGAGTGCGC 60.302 57.895 0.00 0.00 46.38 6.09
5864 7828 5.974312 TCAGAATGTTCAGAAACCCTGAGTG 60.974 44.000 0.00 0.00 43.83 3.51
5865 7829 4.103153 TCAGAATGTTCAGAAACCCTGAGT 59.897 41.667 0.00 0.00 43.83 3.41
5866 7830 4.645535 TCAGAATGTTCAGAAACCCTGAG 58.354 43.478 0.00 0.00 43.83 3.35
5867 7831 4.705110 TCAGAATGTTCAGAAACCCTGA 57.295 40.909 0.00 0.00 43.11 3.86
5868 7832 4.763793 ACATCAGAATGTTCAGAAACCCTG 59.236 41.667 0.00 0.00 43.74 4.45
5869 7833 4.990526 ACATCAGAATGTTCAGAAACCCT 58.009 39.130 0.00 0.00 43.74 4.34
5899 7863 9.787435 TCTCAGTTAAAATATGTTGTGTACCTT 57.213 29.630 0.00 0.00 0.00 3.50
5900 7864 9.787435 TTCTCAGTTAAAATATGTTGTGTACCT 57.213 29.630 0.00 0.00 0.00 3.08
5901 7865 9.821662 GTTCTCAGTTAAAATATGTTGTGTACC 57.178 33.333 0.00 0.00 0.00 3.34
5904 7868 9.897744 CATGTTCTCAGTTAAAATATGTTGTGT 57.102 29.630 0.00 0.00 0.00 3.72
5907 7871 9.559958 GGTCATGTTCTCAGTTAAAATATGTTG 57.440 33.333 0.00 0.00 0.00 3.33
5908 7872 9.295825 TGGTCATGTTCTCAGTTAAAATATGTT 57.704 29.630 0.00 0.00 0.00 2.71
5909 7873 8.862325 TGGTCATGTTCTCAGTTAAAATATGT 57.138 30.769 0.00 0.00 0.00 2.29
5913 7877 8.859090 TCAAATGGTCATGTTCTCAGTTAAAAT 58.141 29.630 0.00 0.00 0.00 1.82
5914 7878 8.231692 TCAAATGGTCATGTTCTCAGTTAAAA 57.768 30.769 0.00 0.00 0.00 1.52
5915 7879 7.040478 CCTCAAATGGTCATGTTCTCAGTTAAA 60.040 37.037 0.00 0.00 0.00 1.52
5916 7880 6.430925 CCTCAAATGGTCATGTTCTCAGTTAA 59.569 38.462 0.00 0.00 0.00 2.01
5917 7881 5.939883 CCTCAAATGGTCATGTTCTCAGTTA 59.060 40.000 0.00 0.00 0.00 2.24
5918 7882 4.763793 CCTCAAATGGTCATGTTCTCAGTT 59.236 41.667 0.00 0.00 0.00 3.16
5919 7883 4.202503 ACCTCAAATGGTCATGTTCTCAGT 60.203 41.667 0.00 0.00 34.86 3.41
5920 7884 4.330250 ACCTCAAATGGTCATGTTCTCAG 58.670 43.478 0.00 0.00 34.86 3.35
5921 7885 4.371624 ACCTCAAATGGTCATGTTCTCA 57.628 40.909 0.00 0.00 34.86 3.27
5931 7895 0.251341 GTGGGCAGACCTCAAATGGT 60.251 55.000 0.00 0.00 44.10 3.55
5932 7896 0.251297 TGTGGGCAGACCTCAAATGG 60.251 55.000 0.00 0.00 39.66 3.16
5933 7897 1.619654 TTGTGGGCAGACCTCAAATG 58.380 50.000 7.38 0.00 46.58 2.32
5937 7901 0.179020 CACTTTGTGGGCAGACCTCA 60.179 55.000 0.00 0.00 40.80 3.86
5938 7902 1.518903 GCACTTTGTGGGCAGACCTC 61.519 60.000 0.00 0.00 46.29 3.85
5939 7903 1.529244 GCACTTTGTGGGCAGACCT 60.529 57.895 0.00 0.00 46.29 3.85
5940 7904 3.042560 GCACTTTGTGGGCAGACC 58.957 61.111 0.00 0.00 46.29 3.85
5946 7910 5.345702 CAAATGATGATAGCACTTTGTGGG 58.654 41.667 0.00 0.00 33.64 4.61
5947 7911 4.802039 GCAAATGATGATAGCACTTTGTGG 59.198 41.667 11.70 0.00 33.64 4.17
5948 7912 4.802039 GGCAAATGATGATAGCACTTTGTG 59.198 41.667 11.70 0.00 36.51 3.33
5949 7913 4.708421 AGGCAAATGATGATAGCACTTTGT 59.292 37.500 11.70 0.00 0.00 2.83
5950 7914 5.258456 AGGCAAATGATGATAGCACTTTG 57.742 39.130 7.69 7.69 0.00 2.77
5951 7915 5.927281 AAGGCAAATGATGATAGCACTTT 57.073 34.783 0.00 0.00 0.00 2.66
5952 7916 5.927281 AAAGGCAAATGATGATAGCACTT 57.073 34.783 0.00 0.00 0.00 3.16
5953 7917 7.592885 AATAAAGGCAAATGATGATAGCACT 57.407 32.000 0.00 0.00 0.00 4.40
5954 7918 9.565213 GATAATAAAGGCAAATGATGATAGCAC 57.435 33.333 0.00 0.00 0.00 4.40
5955 7919 9.299465 TGATAATAAAGGCAAATGATGATAGCA 57.701 29.630 0.00 0.00 0.00 3.49
5959 7923 9.370930 TCCTTGATAATAAAGGCAAATGATGAT 57.629 29.630 0.00 0.00 43.38 2.45
5960 7924 8.632679 GTCCTTGATAATAAAGGCAAATGATGA 58.367 33.333 0.00 0.00 43.38 2.92
5961 7925 8.415553 TGTCCTTGATAATAAAGGCAAATGATG 58.584 33.333 0.00 0.00 43.38 3.07
5962 7926 8.537728 TGTCCTTGATAATAAAGGCAAATGAT 57.462 30.769 0.00 0.00 43.38 2.45
5963 7927 7.953005 TGTCCTTGATAATAAAGGCAAATGA 57.047 32.000 0.00 0.00 43.38 2.57
5964 7928 8.415553 TCATGTCCTTGATAATAAAGGCAAATG 58.584 33.333 0.00 3.24 43.38 2.32
5965 7929 8.537728 TCATGTCCTTGATAATAAAGGCAAAT 57.462 30.769 0.00 0.00 43.38 2.32
5966 7930 7.953005 TCATGTCCTTGATAATAAAGGCAAA 57.047 32.000 0.00 0.00 43.38 3.68
5967 7931 9.812347 ATATCATGTCCTTGATAATAAAGGCAA 57.188 29.630 6.89 0.00 43.38 4.52
5976 7940 9.337714 TCCTCCAATATATCATGTCCTTGATAA 57.662 33.333 6.89 0.13 40.85 1.75
5977 7941 8.915813 TCCTCCAATATATCATGTCCTTGATA 57.084 34.615 5.63 5.63 41.52 2.15
5978 7942 7.819521 TCCTCCAATATATCATGTCCTTGAT 57.180 36.000 0.00 1.89 39.60 2.57
5979 7943 7.819521 ATCCTCCAATATATCATGTCCTTGA 57.180 36.000 0.00 0.00 0.00 3.02
5980 7944 8.874744 AAATCCTCCAATATATCATGTCCTTG 57.125 34.615 0.00 0.00 0.00 3.61
5981 7945 9.887862 AAAAATCCTCCAATATATCATGTCCTT 57.112 29.630 0.00 0.00 0.00 3.36
6036 8000 4.751767 ATGACAGTGAAAAGGCCAAAAA 57.248 36.364 5.01 0.00 0.00 1.94
6037 8001 4.081198 ACAATGACAGTGAAAAGGCCAAAA 60.081 37.500 10.34 0.00 0.00 2.44
6038 8002 3.450457 ACAATGACAGTGAAAAGGCCAAA 59.550 39.130 10.34 0.00 0.00 3.28
6039 8003 3.030291 ACAATGACAGTGAAAAGGCCAA 58.970 40.909 10.34 0.00 0.00 4.52
6040 8004 2.665165 ACAATGACAGTGAAAAGGCCA 58.335 42.857 10.34 0.00 0.00 5.36
6041 8005 3.383761 CAACAATGACAGTGAAAAGGCC 58.616 45.455 10.34 0.00 0.00 5.19
6042 8006 3.383761 CCAACAATGACAGTGAAAAGGC 58.616 45.455 10.34 0.00 0.00 4.35
6043 8007 3.068590 AGCCAACAATGACAGTGAAAAGG 59.931 43.478 10.34 6.60 0.00 3.11
6044 8008 4.311816 AGCCAACAATGACAGTGAAAAG 57.688 40.909 10.34 0.00 0.00 2.27
6045 8009 4.431809 CAAGCCAACAATGACAGTGAAAA 58.568 39.130 10.34 0.00 0.00 2.29
6046 8010 3.737663 GCAAGCCAACAATGACAGTGAAA 60.738 43.478 10.34 0.00 0.00 2.69
6047 8011 2.223782 GCAAGCCAACAATGACAGTGAA 60.224 45.455 10.34 0.00 0.00 3.18
6048 8012 1.337703 GCAAGCCAACAATGACAGTGA 59.662 47.619 10.34 0.00 0.00 3.41
6049 8013 1.067364 TGCAAGCCAACAATGACAGTG 59.933 47.619 0.41 0.41 0.00 3.66
6050 8014 1.338973 CTGCAAGCCAACAATGACAGT 59.661 47.619 0.00 0.00 0.00 3.55
6051 8015 2.060326 CTGCAAGCCAACAATGACAG 57.940 50.000 0.00 0.00 0.00 3.51
6064 8028 3.065510 CCATTCAGAAGAGATGCTGCAAG 59.934 47.826 6.36 0.00 32.27 4.01
6065 8029 3.014623 CCATTCAGAAGAGATGCTGCAA 58.985 45.455 6.36 0.00 32.27 4.08
6066 8030 2.640184 CCATTCAGAAGAGATGCTGCA 58.360 47.619 4.13 4.13 32.27 4.41
6067 8031 1.334243 GCCATTCAGAAGAGATGCTGC 59.666 52.381 0.00 0.00 32.27 5.25
6068 8032 1.948145 GGCCATTCAGAAGAGATGCTG 59.052 52.381 0.00 0.00 0.00 4.41
6069 8033 1.474677 CGGCCATTCAGAAGAGATGCT 60.475 52.381 2.24 0.00 0.00 3.79
6070 8034 0.942962 CGGCCATTCAGAAGAGATGC 59.057 55.000 2.24 0.00 0.00 3.91
6071 8035 2.322355 ACGGCCATTCAGAAGAGATG 57.678 50.000 2.24 0.00 0.00 2.90
6072 8036 2.636830 CAACGGCCATTCAGAAGAGAT 58.363 47.619 2.24 0.00 0.00 2.75
6073 8037 1.945819 GCAACGGCCATTCAGAAGAGA 60.946 52.381 2.24 0.00 0.00 3.10
6074 8038 0.449388 GCAACGGCCATTCAGAAGAG 59.551 55.000 2.24 0.00 0.00 2.85
6075 8039 0.036732 AGCAACGGCCATTCAGAAGA 59.963 50.000 2.24 0.00 42.56 2.87
6076 8040 0.449388 GAGCAACGGCCATTCAGAAG 59.551 55.000 2.24 0.00 42.56 2.85
6077 8041 0.036732 AGAGCAACGGCCATTCAGAA 59.963 50.000 2.24 0.00 42.56 3.02
6078 8042 0.901827 TAGAGCAACGGCCATTCAGA 59.098 50.000 2.24 0.00 42.56 3.27
6079 8043 1.737838 TTAGAGCAACGGCCATTCAG 58.262 50.000 2.24 0.00 42.56 3.02
6080 8044 1.810151 GTTTAGAGCAACGGCCATTCA 59.190 47.619 2.24 0.00 42.56 2.57
6081 8045 2.084546 AGTTTAGAGCAACGGCCATTC 58.915 47.619 2.24 0.00 42.56 2.67
6082 8046 2.200373 AGTTTAGAGCAACGGCCATT 57.800 45.000 2.24 0.00 42.56 3.16
6083 8047 2.084546 GAAGTTTAGAGCAACGGCCAT 58.915 47.619 2.24 0.00 42.56 4.40
6084 8048 1.519408 GAAGTTTAGAGCAACGGCCA 58.481 50.000 2.24 0.00 42.56 5.36
6085 8049 0.442699 CGAAGTTTAGAGCAACGGCC 59.557 55.000 0.00 0.00 42.56 6.13
6086 8050 1.425412 TCGAAGTTTAGAGCAACGGC 58.575 50.000 0.00 0.00 41.61 5.68
6087 8051 3.239941 CGTATCGAAGTTTAGAGCAACGG 59.760 47.826 0.00 0.00 0.00 4.44
6088 8052 4.028670 GTCGTATCGAAGTTTAGAGCAACG 60.029 45.833 0.00 0.00 37.72 4.10
6089 8053 4.028670 CGTCGTATCGAAGTTTAGAGCAAC 60.029 45.833 0.00 0.00 37.72 4.17
6090 8054 4.093514 CGTCGTATCGAAGTTTAGAGCAA 58.906 43.478 0.00 0.00 37.72 3.91
6091 8055 3.125829 ACGTCGTATCGAAGTTTAGAGCA 59.874 43.478 0.00 0.00 44.92 4.26
6092 8056 3.678662 ACGTCGTATCGAAGTTTAGAGC 58.321 45.455 0.00 0.00 44.92 4.09
6093 8057 5.005586 AGAGACGTCGTATCGAAGTTTAGAG 59.994 44.000 13.86 0.00 46.83 2.43
6094 8058 4.867047 AGAGACGTCGTATCGAAGTTTAGA 59.133 41.667 13.86 0.00 46.83 2.10
6095 8059 5.141355 AGAGACGTCGTATCGAAGTTTAG 57.859 43.478 13.86 0.00 46.83 1.85
6096 8060 5.319139 CAAGAGACGTCGTATCGAAGTTTA 58.681 41.667 13.86 0.00 46.83 2.01
6097 8061 4.156915 CAAGAGACGTCGTATCGAAGTTT 58.843 43.478 13.86 6.58 46.83 2.66
6098 8062 3.425892 CCAAGAGACGTCGTATCGAAGTT 60.426 47.826 13.86 0.77 46.83 2.66
6100 8064 2.706273 CCAAGAGACGTCGTATCGAAG 58.294 52.381 13.86 8.08 40.77 3.79
6101 8065 1.202110 GCCAAGAGACGTCGTATCGAA 60.202 52.381 13.86 0.00 37.72 3.71
6102 8066 0.376152 GCCAAGAGACGTCGTATCGA 59.624 55.000 13.86 0.00 34.70 3.59
6103 8067 0.924363 CGCCAAGAGACGTCGTATCG 60.924 60.000 13.86 6.74 0.00 2.92
6104 8068 0.376152 TCGCCAAGAGACGTCGTATC 59.624 55.000 12.01 12.01 0.00 2.24
6105 8069 0.098376 GTCGCCAAGAGACGTCGTAT 59.902 55.000 10.46 0.00 0.00 3.06
6106 8070 1.499056 GTCGCCAAGAGACGTCGTA 59.501 57.895 10.46 0.00 0.00 3.43
6107 8071 2.254651 GTCGCCAAGAGACGTCGT 59.745 61.111 10.46 0.00 0.00 4.34
6108 8072 2.504244 GGTCGCCAAGAGACGTCG 60.504 66.667 10.46 0.00 39.38 5.12
6109 8073 1.733399 GTGGTCGCCAAGAGACGTC 60.733 63.158 7.70 7.70 39.38 4.34
6110 8074 2.338984 GTGGTCGCCAAGAGACGT 59.661 61.111 0.00 0.00 39.38 4.34
6111 8075 1.734477 CTGTGGTCGCCAAGAGACG 60.734 63.158 0.00 0.00 39.38 4.18
6112 8076 0.249911 AACTGTGGTCGCCAAGAGAC 60.250 55.000 0.00 0.00 34.18 3.36
6113 8077 0.033504 GAACTGTGGTCGCCAAGAGA 59.966 55.000 0.00 0.00 34.18 3.10
6114 8078 0.249868 TGAACTGTGGTCGCCAAGAG 60.250 55.000 0.00 3.16 34.18 2.85
6115 8079 0.531974 GTGAACTGTGGTCGCCAAGA 60.532 55.000 0.00 0.00 34.18 3.02
6116 8080 0.813610 TGTGAACTGTGGTCGCCAAG 60.814 55.000 0.00 4.08 34.18 3.61
6117 8081 0.393132 TTGTGAACTGTGGTCGCCAA 60.393 50.000 0.00 0.00 34.18 4.52
6118 8082 0.393132 TTTGTGAACTGTGGTCGCCA 60.393 50.000 0.00 0.00 0.00 5.69
6119 8083 0.307760 CTTTGTGAACTGTGGTCGCC 59.692 55.000 0.00 0.00 0.00 5.54
6120 8084 1.014352 ACTTTGTGAACTGTGGTCGC 58.986 50.000 0.00 0.00 0.00 5.19
6121 8085 2.675844 TCAACTTTGTGAACTGTGGTCG 59.324 45.455 0.00 0.00 0.00 4.79
6122 8086 3.689649 AGTCAACTTTGTGAACTGTGGTC 59.310 43.478 0.00 0.00 0.00 4.02
6123 8087 3.686016 AGTCAACTTTGTGAACTGTGGT 58.314 40.909 0.00 0.00 0.00 4.16
6124 8088 3.242413 CGAGTCAACTTTGTGAACTGTGG 60.242 47.826 0.00 0.00 0.00 4.17
6125 8089 3.242413 CCGAGTCAACTTTGTGAACTGTG 60.242 47.826 0.00 0.00 0.00 3.66
6126 8090 2.936498 CCGAGTCAACTTTGTGAACTGT 59.064 45.455 0.00 0.00 0.00 3.55
6127 8091 3.592381 CCGAGTCAACTTTGTGAACTG 57.408 47.619 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.