Multiple sequence alignment - TraesCS5D01G501000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G501000 chr5D 100.000 3502 0 0 1 3502 529255629 529259130 0.000000e+00 6468.0
1 TraesCS5D01G501000 chr5B 90.281 2387 143 42 954 3298 667838326 667840665 0.000000e+00 3040.0
2 TraesCS5D01G501000 chr5B 96.591 440 14 1 1977 2415 704279822 704279383 0.000000e+00 728.0
3 TraesCS5D01G501000 chr5B 89.202 426 36 3 1 424 667836571 667836988 1.110000e-144 523.0
4 TraesCS5D01G501000 chr5B 85.019 267 22 6 533 786 667837025 667837286 4.490000e-64 255.0
5 TraesCS5D01G501000 chr5B 96.552 145 5 0 805 949 339291922 339291778 1.260000e-59 241.0
6 TraesCS5D01G501000 chr5B 95.890 146 6 0 804 949 393983710 393983855 1.620000e-58 237.0
7 TraesCS5D01G501000 chr5B 96.667 60 2 0 949 1008 667837312 667837371 2.220000e-17 100.0
8 TraesCS5D01G501000 chr5B 97.222 36 1 0 461 496 667836991 667837026 1.050000e-05 62.1
9 TraesCS5D01G501000 chr5A 93.682 1662 89 7 949 2596 657394448 657396107 0.000000e+00 2473.0
10 TraesCS5D01G501000 chr5A 83.849 582 40 23 2740 3281 657396208 657396775 4.030000e-139 505.0
11 TraesCS5D01G501000 chr5A 94.667 150 8 0 804 953 623678667 623678816 2.100000e-57 233.0
12 TraesCS5D01G501000 chr4B 95.270 444 19 2 1974 2415 175550419 175549976 0.000000e+00 702.0
13 TraesCS5D01G501000 chr4B 94.104 441 12 2 1976 2415 564199368 564198941 0.000000e+00 658.0
14 TraesCS5D01G501000 chr4B 100.000 30 0 0 1952 1981 175549945 175549916 4.880000e-04 56.5
15 TraesCS5D01G501000 chr4B 100.000 30 0 0 1952 1981 564198910 564198881 4.880000e-04 56.5
16 TraesCS5D01G501000 chr1A 95.581 430 19 0 1977 2406 483640248 483640677 0.000000e+00 689.0
17 TraesCS5D01G501000 chr1A 100.000 32 0 0 1952 1983 483640717 483640748 3.770000e-05 60.2
18 TraesCS5D01G501000 chr1A 96.875 32 1 0 2601 2632 70694364 70694395 2.000000e-03 54.7
19 TraesCS5D01G501000 chr1A 100.000 28 0 0 3402 3429 540717818 540717791 6.000000e-03 52.8
20 TraesCS5D01G501000 chr1B 95.750 400 14 2 1977 2375 169942895 169942498 2.950000e-180 641.0
21 TraesCS5D01G501000 chr1B 94.805 154 7 1 2263 2415 169942491 169942338 4.520000e-59 239.0
22 TraesCS5D01G501000 chr1B 95.139 144 7 0 806 949 641210190 641210333 9.780000e-56 228.0
23 TraesCS5D01G501000 chr1B 91.304 161 12 2 797 956 340426423 340426582 5.890000e-53 219.0
24 TraesCS5D01G501000 chr1B 100.000 87 0 0 1977 2063 332156338 332156252 1.010000e-35 161.0
25 TraesCS5D01G501000 chr1B 93.103 87 6 0 1977 2063 390430909 390430823 1.020000e-25 128.0
26 TraesCS5D01G501000 chrUn 84.227 317 50 0 1646 1962 215036113 215036429 3.390000e-80 309.0
27 TraesCS5D01G501000 chr7A 84.247 292 46 0 1629 1920 730910864 730910573 5.720000e-73 285.0
28 TraesCS5D01G501000 chr7A 75.776 322 74 3 289 607 732970796 732971116 3.620000e-35 159.0
29 TraesCS5D01G501000 chr7D 95.890 146 6 0 804 949 579747613 579747468 1.620000e-58 237.0
30 TraesCS5D01G501000 chr7D 80.952 252 46 2 355 604 159067773 159067522 7.670000e-47 198.0
31 TraesCS5D01G501000 chr2B 95.205 146 7 0 804 949 159364212 159364357 7.560000e-57 231.0
32 TraesCS5D01G501000 chr2B 94.000 150 9 0 804 953 41607615 41607466 9.780000e-56 228.0
33 TraesCS5D01G501000 chr3A 95.139 144 7 0 806 949 594011704 594011847 9.780000e-56 228.0
34 TraesCS5D01G501000 chr6B 97.701 87 1 1 1977 2063 631947124 631947209 7.830000e-32 148.0
35 TraesCS5D01G501000 chr6B 87.500 56 2 2 2596 2646 680547558 680547503 3.770000e-05 60.2
36 TraesCS5D01G501000 chr2A 94.595 37 1 1 2597 2632 767016593 767016557 4.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G501000 chr5D 529255629 529259130 3501 False 6468.00 6468 100.0000 1 3502 1 chr5D.!!$F1 3501
1 TraesCS5D01G501000 chr5B 667836571 667840665 4094 False 796.02 3040 91.6782 1 3298 5 chr5B.!!$F2 3297
2 TraesCS5D01G501000 chr5A 657394448 657396775 2327 False 1489.00 2473 88.7655 949 3281 2 chr5A.!!$F2 2332
3 TraesCS5D01G501000 chr4B 175549916 175550419 503 True 379.25 702 97.6350 1952 2415 2 chr4B.!!$R1 463
4 TraesCS5D01G501000 chr1A 483640248 483640748 500 False 374.60 689 97.7905 1952 2406 2 chr1A.!!$F2 454
5 TraesCS5D01G501000 chr1B 169942338 169942895 557 True 440.00 641 95.2775 1977 2415 2 chr1B.!!$R3 438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 927 0.032952 GGCCTGTGTCTTGTCGTACA 59.967 55.0 0.00 0.0 0.00 2.90 F
1010 1026 0.108945 GCTTTGCCAATGCTGAGTCC 60.109 55.0 7.97 0.0 38.71 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 3626 0.179702 AGTGCCAGCATGTGATCGAT 59.820 50.000 0.0 0.0 0.00 3.59 R
2667 3835 1.544691 AGAGCGTTTAGACCATCACGT 59.455 47.619 0.0 0.0 35.06 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.202960 TAGCACGGTATTGGCGGC 60.203 61.111 0.00 0.00 0.00 6.53
65 66 7.208064 ACCCTATATCTGAGTCTCCTAGATC 57.792 44.000 6.07 0.00 33.51 2.75
76 77 1.133982 CTCCTAGATCGGATGATGGCG 59.866 57.143 0.00 0.00 34.09 5.69
78 79 0.174389 CTAGATCGGATGATGGCGGG 59.826 60.000 0.00 0.00 34.09 6.13
87 88 2.125952 GATGGCGGGCTTTTGTGC 60.126 61.111 2.38 0.00 0.00 4.57
130 131 5.574443 GCATTGTTTTGGAGCAGATTCTAAC 59.426 40.000 0.00 0.00 0.00 2.34
167 168 5.801531 TGTGGAGTGTTGTTACATCTACT 57.198 39.130 2.82 0.50 36.50 2.57
169 170 4.389077 GTGGAGTGTTGTTACATCTACTGC 59.611 45.833 8.06 8.06 36.50 4.40
189 190 2.129823 GTTGAAGACGACGGTTCTCA 57.870 50.000 11.93 1.56 0.00 3.27
190 191 2.052157 GTTGAAGACGACGGTTCTCAG 58.948 52.381 11.93 0.00 0.00 3.35
212 213 0.244994 ACGTGATGCAGTGGAGTCTC 59.755 55.000 0.00 0.00 0.00 3.36
213 214 0.244721 CGTGATGCAGTGGAGTCTCA 59.755 55.000 1.47 0.00 0.00 3.27
241 242 2.434884 CTGGTTGATGGACGCGCT 60.435 61.111 5.73 0.00 0.00 5.92
242 243 2.741985 TGGTTGATGGACGCGCTG 60.742 61.111 5.73 1.02 0.00 5.18
243 244 3.499737 GGTTGATGGACGCGCTGG 61.500 66.667 5.73 0.00 0.00 4.85
260 263 1.148273 GGCTGGTGGTGTTGTCTGA 59.852 57.895 0.00 0.00 0.00 3.27
263 266 1.498865 CTGGTGGTGTTGTCTGACGC 61.499 60.000 2.98 0.00 0.00 5.19
268 271 0.602638 GGTGTTGTCTGACGCCATGA 60.603 55.000 2.98 0.00 46.89 3.07
281 284 1.875157 CGCCATGATGATGTCGATGGT 60.875 52.381 0.00 0.00 32.65 3.55
282 285 2.610232 CGCCATGATGATGTCGATGGTA 60.610 50.000 0.00 0.00 32.65 3.25
283 286 2.998670 GCCATGATGATGTCGATGGTAG 59.001 50.000 0.00 0.00 37.60 3.18
284 287 3.555795 GCCATGATGATGTCGATGGTAGT 60.556 47.826 0.00 0.00 37.60 2.73
285 288 4.635223 CCATGATGATGTCGATGGTAGTT 58.365 43.478 0.00 0.00 33.99 2.24
286 289 4.450080 CCATGATGATGTCGATGGTAGTTG 59.550 45.833 0.00 0.00 33.99 3.16
287 290 4.058721 TGATGATGTCGATGGTAGTTGG 57.941 45.455 0.00 0.00 0.00 3.77
288 291 3.450817 TGATGATGTCGATGGTAGTTGGT 59.549 43.478 0.00 0.00 0.00 3.67
305 308 0.322546 GGTAGTTGGGTCTGGCAAGG 60.323 60.000 0.00 0.00 0.00 3.61
311 314 0.251297 TGGGTCTGGCAAGGTCAATG 60.251 55.000 0.00 0.00 0.00 2.82
324 327 0.103208 GTCAATGCGACGATCCCTCT 59.897 55.000 0.00 0.00 34.19 3.69
326 329 0.933097 CAATGCGACGATCCCTCTTG 59.067 55.000 0.00 0.00 0.00 3.02
337 340 3.118629 CGATCCCTCTTGAAGATTGGACA 60.119 47.826 13.72 0.00 30.78 4.02
352 355 0.693049 GGACAGTGGAAGATGGTGGT 59.307 55.000 0.00 0.00 0.00 4.16
372 375 1.659954 GCAGATCCTAGAGCGTGCG 60.660 63.158 0.00 0.00 0.00 5.34
416 419 1.537135 GCTAGATCGGTTGGTGCTCTC 60.537 57.143 0.00 0.00 0.00 3.20
426 429 4.427661 GTGCTCTCGGCTCGCTGT 62.428 66.667 0.00 0.00 42.39 4.40
427 430 2.750237 TGCTCTCGGCTCGCTGTA 60.750 61.111 0.00 0.00 42.39 2.74
428 431 2.025441 GCTCTCGGCTCGCTGTAG 59.975 66.667 0.00 0.00 38.06 2.74
429 432 2.718731 CTCTCGGCTCGCTGTAGG 59.281 66.667 0.00 0.00 0.00 3.18
430 433 2.829003 TCTCGGCTCGCTGTAGGG 60.829 66.667 0.00 0.00 0.00 3.53
431 434 4.577246 CTCGGCTCGCTGTAGGGC 62.577 72.222 0.00 0.00 36.75 5.19
439 442 4.452733 GCTGTAGGGCGGCTTCGT 62.453 66.667 9.56 0.00 45.76 3.85
440 443 2.509336 CTGTAGGGCGGCTTCGTG 60.509 66.667 9.56 0.00 36.07 4.35
441 444 2.992689 TGTAGGGCGGCTTCGTGA 60.993 61.111 9.56 0.00 36.07 4.35
442 445 2.202756 GTAGGGCGGCTTCGTGAG 60.203 66.667 9.56 0.00 36.07 3.51
443 446 3.458163 TAGGGCGGCTTCGTGAGG 61.458 66.667 9.56 0.00 36.07 3.86
450 453 4.373116 GCTTCGTGAGGCCACCGA 62.373 66.667 5.01 7.63 40.12 4.69
451 454 2.342279 CTTCGTGAGGCCACCGAA 59.658 61.111 19.40 19.40 40.12 4.30
452 455 1.079127 CTTCGTGAGGCCACCGAAT 60.079 57.895 20.32 0.00 40.12 3.34
453 456 0.673644 CTTCGTGAGGCCACCGAATT 60.674 55.000 20.32 0.00 40.12 2.17
454 457 0.609151 TTCGTGAGGCCACCGAATTA 59.391 50.000 17.64 2.45 40.12 1.40
455 458 0.174845 TCGTGAGGCCACCGAATTAG 59.825 55.000 5.01 0.00 40.12 1.73
456 459 0.174845 CGTGAGGCCACCGAATTAGA 59.825 55.000 5.01 0.00 40.12 2.10
457 460 1.202533 CGTGAGGCCACCGAATTAGAT 60.203 52.381 5.01 0.00 40.12 1.98
458 461 2.213499 GTGAGGCCACCGAATTAGATG 58.787 52.381 5.01 0.00 37.33 2.90
459 462 2.115427 TGAGGCCACCGAATTAGATGA 58.885 47.619 5.01 0.00 0.00 2.92
464 467 2.031682 GCCACCGAATTAGATGATGTGC 60.032 50.000 0.00 0.00 0.00 4.57
496 499 4.227300 AGTCAGGGCACATCATAAACCTTA 59.773 41.667 0.00 0.00 0.00 2.69
497 500 5.103940 AGTCAGGGCACATCATAAACCTTAT 60.104 40.000 0.00 0.00 0.00 1.73
498 501 5.594317 GTCAGGGCACATCATAAACCTTATT 59.406 40.000 0.00 0.00 0.00 1.40
499 502 5.593909 TCAGGGCACATCATAAACCTTATTG 59.406 40.000 0.00 0.00 0.00 1.90
500 503 4.895297 AGGGCACATCATAAACCTTATTGG 59.105 41.667 0.00 0.00 42.93 3.16
517 520 7.851508 CCTTATTGGTGTAACAACATAGATCG 58.148 38.462 0.00 0.00 39.98 3.69
518 521 5.734855 ATTGGTGTAACAACATAGATCGC 57.265 39.130 0.00 0.00 39.98 4.58
519 522 3.527533 TGGTGTAACAACATAGATCGCC 58.472 45.455 0.00 0.00 39.98 5.54
520 523 3.055747 TGGTGTAACAACATAGATCGCCA 60.056 43.478 0.00 0.00 39.98 5.69
521 524 3.555956 GGTGTAACAACATAGATCGCCAG 59.444 47.826 0.00 0.00 39.98 4.85
522 525 4.430007 GTGTAACAACATAGATCGCCAGA 58.570 43.478 0.00 0.00 36.32 3.86
523 526 4.868171 GTGTAACAACATAGATCGCCAGAA 59.132 41.667 0.00 0.00 36.32 3.02
524 527 5.350365 GTGTAACAACATAGATCGCCAGAAA 59.650 40.000 0.00 0.00 36.32 2.52
525 528 5.580691 TGTAACAACATAGATCGCCAGAAAG 59.419 40.000 0.00 0.00 0.00 2.62
526 529 3.535561 ACAACATAGATCGCCAGAAAGG 58.464 45.455 0.00 0.00 41.84 3.11
527 530 3.055094 ACAACATAGATCGCCAGAAAGGT 60.055 43.478 0.00 0.00 40.61 3.50
543 546 4.594491 AGAAAGGTGGCTTTGGATTGATTT 59.406 37.500 0.00 0.00 0.00 2.17
548 551 5.306678 AGGTGGCTTTGGATTGATTTTTGTA 59.693 36.000 0.00 0.00 0.00 2.41
568 571 8.925161 TTTGTATTTATTTTGCCAGACTATGC 57.075 30.769 0.00 0.00 0.00 3.14
570 573 8.972458 TGTATTTATTTTGCCAGACTATGCTA 57.028 30.769 0.00 0.00 0.00 3.49
607 610 8.836268 AAAAATGATTGTGTGCATAGTTTGAT 57.164 26.923 0.00 0.00 0.00 2.57
611 614 6.841119 TGATTGTGTGCATAGTTTGATACAC 58.159 36.000 11.73 11.73 41.50 2.90
621 624 1.066430 GTTTGATACACAGGCCCGAGA 60.066 52.381 0.00 0.00 0.00 4.04
642 658 3.403936 AAAAACTGTGCCTCTCGCT 57.596 47.368 0.00 0.00 38.78 4.93
686 702 1.303236 CGGTTGTTCTGGCATGGGA 60.303 57.895 0.00 0.00 0.00 4.37
687 703 1.308069 CGGTTGTTCTGGCATGGGAG 61.308 60.000 0.00 0.00 0.00 4.30
709 725 2.903784 TCGGGAAGAAGATGGACAAGAA 59.096 45.455 0.00 0.00 0.00 2.52
711 727 3.873952 CGGGAAGAAGATGGACAAGAATC 59.126 47.826 0.00 0.00 0.00 2.52
718 734 0.991920 ATGGACAAGAATCGTGGGGT 59.008 50.000 0.75 0.00 0.00 4.95
720 736 0.676782 GGACAAGAATCGTGGGGTGG 60.677 60.000 0.75 0.00 0.00 4.61
721 737 0.323629 GACAAGAATCGTGGGGTGGA 59.676 55.000 0.75 0.00 0.00 4.02
759 775 3.580916 GGCAACCGCGTTGGATTA 58.419 55.556 18.46 0.00 42.99 1.75
760 776 1.877367 GGCAACCGCGTTGGATTAA 59.123 52.632 18.46 0.00 42.99 1.40
761 777 0.179174 GGCAACCGCGTTGGATTAAG 60.179 55.000 18.46 0.00 42.99 1.85
779 795 1.450312 GATCCAACGGCCCACTCAG 60.450 63.158 0.00 0.00 0.00 3.35
786 802 1.450312 CGGCCCACTCAGATTGACC 60.450 63.158 0.00 0.00 0.00 4.02
789 805 0.036388 GCCCACTCAGATTGACCGAA 60.036 55.000 0.00 0.00 0.00 4.30
791 807 2.350522 CCCACTCAGATTGACCGAAAG 58.649 52.381 0.00 0.00 0.00 2.62
810 826 6.526222 CGAAAGGTTGAATATATAAGAGCGC 58.474 40.000 0.00 0.00 0.00 5.92
811 827 6.366332 CGAAAGGTTGAATATATAAGAGCGCT 59.634 38.462 11.27 11.27 0.00 5.92
812 828 7.426929 AAAGGTTGAATATATAAGAGCGCTG 57.573 36.000 18.48 0.00 0.00 5.18
813 829 4.932200 AGGTTGAATATATAAGAGCGCTGC 59.068 41.667 18.48 6.71 0.00 5.25
814 830 4.932200 GGTTGAATATATAAGAGCGCTGCT 59.068 41.667 18.48 9.38 43.88 4.24
815 831 6.071334 AGGTTGAATATATAAGAGCGCTGCTA 60.071 38.462 18.48 5.99 39.88 3.49
816 832 6.758886 GGTTGAATATATAAGAGCGCTGCTAT 59.241 38.462 18.48 13.85 39.88 2.97
817 833 7.921214 GGTTGAATATATAAGAGCGCTGCTATA 59.079 37.037 18.48 15.69 39.88 1.31
818 834 8.747666 GTTGAATATATAAGAGCGCTGCTATAC 58.252 37.037 18.48 0.00 39.88 1.47
819 835 7.132863 TGAATATATAAGAGCGCTGCTATACG 58.867 38.462 18.48 0.00 39.88 3.06
820 836 4.966965 ATATAAGAGCGCTGCTATACGT 57.033 40.909 18.48 0.00 39.88 3.57
821 837 7.725818 ATATATAAGAGCGCTGCTATACGTA 57.274 36.000 18.48 1.48 39.88 3.57
822 838 2.402640 AAGAGCGCTGCTATACGTAC 57.597 50.000 18.48 0.00 39.88 3.67
823 839 0.235144 AGAGCGCTGCTATACGTACG 59.765 55.000 18.48 15.01 39.88 3.67
824 840 0.234106 GAGCGCTGCTATACGTACGA 59.766 55.000 24.41 6.04 39.88 3.43
825 841 0.873054 AGCGCTGCTATACGTACGAT 59.127 50.000 24.41 13.27 36.99 3.73
826 842 1.136029 AGCGCTGCTATACGTACGATC 60.136 52.381 24.41 6.19 36.99 3.69
827 843 1.399343 GCGCTGCTATACGTACGATCA 60.399 52.381 24.41 6.86 0.00 2.92
828 844 2.912366 CGCTGCTATACGTACGATCAA 58.088 47.619 24.41 4.52 0.00 2.57
829 845 3.294102 CGCTGCTATACGTACGATCAAA 58.706 45.455 24.41 1.85 0.00 2.69
830 846 3.117507 CGCTGCTATACGTACGATCAAAC 59.882 47.826 24.41 7.11 0.00 2.93
831 847 4.288531 GCTGCTATACGTACGATCAAACT 58.711 43.478 24.41 0.00 0.00 2.66
832 848 4.738740 GCTGCTATACGTACGATCAAACTT 59.261 41.667 24.41 0.00 0.00 2.66
833 849 5.108330 GCTGCTATACGTACGATCAAACTTC 60.108 44.000 24.41 2.35 0.00 3.01
834 850 5.882553 TGCTATACGTACGATCAAACTTCA 58.117 37.500 24.41 4.90 0.00 3.02
835 851 6.500910 TGCTATACGTACGATCAAACTTCAT 58.499 36.000 24.41 0.00 0.00 2.57
836 852 7.641760 TGCTATACGTACGATCAAACTTCATA 58.358 34.615 24.41 0.00 0.00 2.15
837 853 7.588854 TGCTATACGTACGATCAAACTTCATAC 59.411 37.037 24.41 0.00 0.00 2.39
838 854 6.964677 ATACGTACGATCAAACTTCATACG 57.035 37.500 24.41 0.00 39.72 3.06
839 855 4.973396 ACGTACGATCAAACTTCATACGA 58.027 39.130 24.41 0.00 37.83 3.43
840 856 5.575957 ACGTACGATCAAACTTCATACGAT 58.424 37.500 24.41 0.00 37.83 3.73
841 857 6.032094 ACGTACGATCAAACTTCATACGATT 58.968 36.000 24.41 0.00 37.83 3.34
842 858 6.529125 ACGTACGATCAAACTTCATACGATTT 59.471 34.615 24.41 0.00 37.83 2.17
843 859 7.062605 ACGTACGATCAAACTTCATACGATTTT 59.937 33.333 24.41 0.00 37.83 1.82
844 860 7.367228 CGTACGATCAAACTTCATACGATTTTG 59.633 37.037 10.44 0.00 36.85 2.44
845 861 6.021596 ACGATCAAACTTCATACGATTTTGC 58.978 36.000 0.00 0.00 30.10 3.68
846 862 5.167803 CGATCAAACTTCATACGATTTTGCG 59.832 40.000 0.00 0.00 30.10 4.85
854 870 1.979897 TACGATTTTGCGTACGAGCA 58.020 45.000 21.65 5.23 43.61 4.26
860 876 3.351450 TGCGTACGAGCAGACTGT 58.649 55.556 21.65 0.00 42.92 3.55
861 877 1.658114 TGCGTACGAGCAGACTGTT 59.342 52.632 21.65 0.00 42.92 3.16
862 878 0.386858 TGCGTACGAGCAGACTGTTC 60.387 55.000 21.65 9.13 42.92 3.18
863 879 0.109689 GCGTACGAGCAGACTGTTCT 60.110 55.000 21.65 7.02 37.05 3.01
864 880 1.129998 GCGTACGAGCAGACTGTTCTA 59.870 52.381 21.65 6.18 37.05 2.10
865 881 2.788407 GCGTACGAGCAGACTGTTCTAG 60.788 54.545 21.65 5.40 37.05 2.43
866 882 2.415857 CGTACGAGCAGACTGTTCTAGT 59.584 50.000 10.44 10.45 44.02 2.57
867 883 2.999507 ACGAGCAGACTGTTCTAGTG 57.000 50.000 16.13 4.44 40.53 2.74
868 884 2.231529 ACGAGCAGACTGTTCTAGTGT 58.768 47.619 16.13 5.02 40.53 3.55
869 885 3.409570 ACGAGCAGACTGTTCTAGTGTA 58.590 45.455 16.13 0.00 40.53 2.90
870 886 3.437395 ACGAGCAGACTGTTCTAGTGTAG 59.563 47.826 16.13 2.83 40.53 2.74
871 887 3.437395 CGAGCAGACTGTTCTAGTGTAGT 59.563 47.826 16.13 0.00 40.53 2.73
872 888 4.670478 CGAGCAGACTGTTCTAGTGTAGTG 60.670 50.000 16.13 0.00 40.53 2.74
873 889 3.508012 AGCAGACTGTTCTAGTGTAGTGG 59.492 47.826 3.99 0.00 40.53 4.00
874 890 3.367498 GCAGACTGTTCTAGTGTAGTGGG 60.367 52.174 3.99 0.00 40.53 4.61
875 891 2.826725 AGACTGTTCTAGTGTAGTGGGC 59.173 50.000 0.00 0.00 40.53 5.36
876 892 1.900486 ACTGTTCTAGTGTAGTGGGCC 59.100 52.381 0.00 0.00 38.49 5.80
877 893 1.207329 CTGTTCTAGTGTAGTGGGCCC 59.793 57.143 17.59 17.59 0.00 5.80
878 894 1.272807 GTTCTAGTGTAGTGGGCCCA 58.727 55.000 24.45 24.45 0.00 5.36
879 895 1.626825 GTTCTAGTGTAGTGGGCCCAA 59.373 52.381 30.64 9.77 0.00 4.12
880 896 2.032965 TCTAGTGTAGTGGGCCCAAA 57.967 50.000 30.64 16.10 0.00 3.28
881 897 1.626825 TCTAGTGTAGTGGGCCCAAAC 59.373 52.381 30.64 27.33 0.00 2.93
882 898 0.322322 TAGTGTAGTGGGCCCAAACG 59.678 55.000 30.64 0.00 0.00 3.60
883 899 1.228033 GTGTAGTGGGCCCAAACGT 60.228 57.895 30.64 14.46 0.00 3.99
884 900 0.820482 GTGTAGTGGGCCCAAACGTT 60.820 55.000 30.64 12.58 0.00 3.99
885 901 0.820074 TGTAGTGGGCCCAAACGTTG 60.820 55.000 30.64 0.00 0.00 4.10
899 915 2.983592 GTTGGGAACGGGCCTGTG 60.984 66.667 20.54 2.89 0.00 3.66
900 916 3.494254 TTGGGAACGGGCCTGTGT 61.494 61.111 20.54 8.64 0.00 3.72
901 917 3.485346 TTGGGAACGGGCCTGTGTC 62.485 63.158 20.54 16.97 0.00 3.67
902 918 3.637273 GGGAACGGGCCTGTGTCT 61.637 66.667 20.54 1.42 0.00 3.41
903 919 2.430367 GGAACGGGCCTGTGTCTT 59.570 61.111 20.54 0.95 0.00 3.01
904 920 1.966451 GGAACGGGCCTGTGTCTTG 60.966 63.158 20.54 0.00 0.00 3.02
905 921 1.227853 GAACGGGCCTGTGTCTTGT 60.228 57.895 20.54 0.00 0.00 3.16
906 922 1.227853 AACGGGCCTGTGTCTTGTC 60.228 57.895 20.54 0.00 0.00 3.18
907 923 2.738521 CGGGCCTGTGTCTTGTCG 60.739 66.667 2.29 0.00 0.00 4.35
908 924 2.426023 GGGCCTGTGTCTTGTCGT 59.574 61.111 0.84 0.00 0.00 4.34
909 925 1.669440 GGGCCTGTGTCTTGTCGTA 59.331 57.895 0.84 0.00 0.00 3.43
910 926 0.669625 GGGCCTGTGTCTTGTCGTAC 60.670 60.000 0.84 0.00 0.00 3.67
911 927 0.032952 GGCCTGTGTCTTGTCGTACA 59.967 55.000 0.00 0.00 0.00 2.90
912 928 1.539496 GGCCTGTGTCTTGTCGTACAA 60.539 52.381 0.00 0.00 36.54 2.41
913 929 2.206750 GCCTGTGTCTTGTCGTACAAA 58.793 47.619 0.00 0.00 37.69 2.83
914 930 2.610374 GCCTGTGTCTTGTCGTACAAAA 59.390 45.455 0.00 0.00 37.69 2.44
915 931 3.250040 GCCTGTGTCTTGTCGTACAAAAT 59.750 43.478 0.00 0.00 37.69 1.82
916 932 4.610680 GCCTGTGTCTTGTCGTACAAAATC 60.611 45.833 0.00 0.00 37.69 2.17
917 933 4.376008 CCTGTGTCTTGTCGTACAAAATCG 60.376 45.833 0.00 0.00 37.69 3.34
918 934 4.114073 TGTGTCTTGTCGTACAAAATCGT 58.886 39.130 0.00 0.00 37.69 3.73
919 935 5.280164 TGTGTCTTGTCGTACAAAATCGTA 58.720 37.500 0.00 0.00 37.69 3.43
920 936 5.921976 TGTGTCTTGTCGTACAAAATCGTAT 59.078 36.000 0.00 0.00 37.69 3.06
921 937 6.129035 TGTGTCTTGTCGTACAAAATCGTATG 60.129 38.462 0.00 0.00 37.69 2.39
922 938 5.346551 TGTCTTGTCGTACAAAATCGTATGG 59.653 40.000 0.00 0.00 37.69 2.74
923 939 4.865925 TCTTGTCGTACAAAATCGTATGGG 59.134 41.667 0.00 0.00 37.69 4.00
924 940 4.453177 TGTCGTACAAAATCGTATGGGA 57.547 40.909 0.00 0.00 0.00 4.37
925 941 4.818642 TGTCGTACAAAATCGTATGGGAA 58.181 39.130 0.00 0.00 0.00 3.97
926 942 5.236282 TGTCGTACAAAATCGTATGGGAAA 58.764 37.500 0.00 0.00 0.00 3.13
927 943 5.699915 TGTCGTACAAAATCGTATGGGAAAA 59.300 36.000 0.00 0.00 0.00 2.29
928 944 6.204301 TGTCGTACAAAATCGTATGGGAAAAA 59.796 34.615 0.00 0.00 0.00 1.94
929 945 7.094720 TGTCGTACAAAATCGTATGGGAAAAAT 60.095 33.333 0.00 0.00 0.00 1.82
930 946 8.389603 GTCGTACAAAATCGTATGGGAAAAATA 58.610 33.333 0.00 0.00 0.00 1.40
931 947 9.111613 TCGTACAAAATCGTATGGGAAAAATAT 57.888 29.630 0.00 0.00 0.00 1.28
932 948 9.377383 CGTACAAAATCGTATGGGAAAAATATC 57.623 33.333 0.00 0.00 0.00 1.63
933 949 9.377383 GTACAAAATCGTATGGGAAAAATATCG 57.623 33.333 0.00 0.00 0.00 2.92
934 950 7.992008 ACAAAATCGTATGGGAAAAATATCGT 58.008 30.769 0.00 0.00 0.00 3.73
935 951 9.111613 ACAAAATCGTATGGGAAAAATATCGTA 57.888 29.630 0.00 0.00 0.00 3.43
936 952 9.377383 CAAAATCGTATGGGAAAAATATCGTAC 57.623 33.333 0.00 0.00 0.00 3.67
937 953 6.939551 ATCGTATGGGAAAAATATCGTACG 57.060 37.500 9.53 9.53 36.11 3.67
938 954 4.681025 TCGTATGGGAAAAATATCGTACGC 59.319 41.667 11.24 0.00 35.13 4.42
939 955 4.445052 CGTATGGGAAAAATATCGTACGCA 59.555 41.667 11.24 0.48 0.00 5.24
940 956 5.050904 CGTATGGGAAAAATATCGTACGCAA 60.051 40.000 11.24 0.49 0.00 4.85
942 958 3.623960 TGGGAAAAATATCGTACGCAAGG 59.376 43.478 11.24 0.00 46.39 3.61
943 959 3.547413 GGGAAAAATATCGTACGCAAGGC 60.547 47.826 11.24 0.00 46.39 4.35
944 960 3.064271 GGAAAAATATCGTACGCAAGGCA 59.936 43.478 11.24 0.00 46.39 4.75
945 961 3.944422 AAAATATCGTACGCAAGGCAG 57.056 42.857 11.24 0.00 46.39 4.85
946 962 2.596904 AATATCGTACGCAAGGCAGT 57.403 45.000 11.24 0.00 46.39 4.40
947 963 2.596904 ATATCGTACGCAAGGCAGTT 57.403 45.000 11.24 0.00 46.39 3.16
960 976 7.193595 ACGCAAGGCAGTTTTGAATATATAAC 58.806 34.615 0.00 0.00 46.39 1.89
998 1014 2.598394 TGCCACCTGAGCTTTGCC 60.598 61.111 0.00 0.00 0.00 4.52
1010 1026 0.108945 GCTTTGCCAATGCTGAGTCC 60.109 55.000 7.97 0.00 38.71 3.85
1041 2067 1.234615 AAAACCATGCTCCCGTGACG 61.235 55.000 0.00 0.00 0.00 4.35
1125 2151 2.591429 CACGTGCTGCTGTTCCCA 60.591 61.111 0.82 0.00 0.00 4.37
1264 2290 2.283388 AGTACCGCTTCGTCCCCA 60.283 61.111 0.00 0.00 0.00 4.96
1368 2394 3.072468 CCCTTCCGTGACCGCCTA 61.072 66.667 0.00 0.00 0.00 3.93
1393 2419 0.733729 CGTCCTGGAAGAGTACTCCG 59.266 60.000 19.38 9.15 34.07 4.63
1398 2424 0.635009 TGGAAGAGTACTCCGGGGAT 59.365 55.000 19.38 0.00 0.00 3.85
1583 2609 2.816689 CACGTAGCATAATTCCCACGA 58.183 47.619 0.00 0.00 33.81 4.35
1584 2610 3.191669 CACGTAGCATAATTCCCACGAA 58.808 45.455 0.00 0.00 33.81 3.85
1592 2618 7.482169 AGCATAATTCCCACGAATATCTCTA 57.518 36.000 0.00 0.00 37.76 2.43
1604 2630 6.201997 CACGAATATCTCTAGGATCGATCGAT 59.798 42.308 29.76 29.76 37.35 3.59
1625 2652 1.341482 TGACCCTGGTTTGTTGCAGAA 60.341 47.619 0.00 0.00 0.00 3.02
1736 2763 4.717629 CTGGAGCGCGTCGTGGAA 62.718 66.667 8.43 0.00 0.00 3.53
1757 2784 3.119096 GTGAAAGCGTCCTCCGGC 61.119 66.667 0.00 0.00 36.94 6.13
1758 2785 3.621805 TGAAAGCGTCCTCCGGCA 61.622 61.111 0.00 0.00 36.94 5.69
1760 2787 2.125106 AAAGCGTCCTCCGGCATC 60.125 61.111 0.00 0.00 36.94 3.91
2478 3626 1.437573 CTCGCCATCGGTAAGCTGA 59.562 57.895 0.00 0.00 36.13 4.26
2503 3661 0.321919 CACATGCTGGCACTGTAGGT 60.322 55.000 0.00 0.00 37.38 3.08
2602 3769 9.186837 TCGAATCTCTGTTAATTAAGTACTCCT 57.813 33.333 0.00 0.00 0.00 3.69
2623 3790 9.915629 ACTCCTATGTAAAGAAATATAAGAGCG 57.084 33.333 0.00 0.00 0.00 5.03
2669 3837 9.773328 ATAAACATGAATGATCTAAACACAACG 57.227 29.630 0.00 0.00 0.00 4.10
2670 3838 6.801539 ACATGAATGATCTAAACACAACGT 57.198 33.333 0.00 0.00 0.00 3.99
2671 3839 6.602179 ACATGAATGATCTAAACACAACGTG 58.398 36.000 0.00 0.00 39.75 4.49
2672 3840 6.426633 ACATGAATGATCTAAACACAACGTGA 59.573 34.615 0.00 0.00 36.96 4.35
2673 3841 7.119699 ACATGAATGATCTAAACACAACGTGAT 59.880 33.333 0.00 0.00 36.96 3.06
2674 3842 6.830736 TGAATGATCTAAACACAACGTGATG 58.169 36.000 0.24 0.00 36.96 3.07
2675 3843 5.801350 ATGATCTAAACACAACGTGATGG 57.199 39.130 0.24 0.00 36.96 3.51
2676 3844 4.637276 TGATCTAAACACAACGTGATGGT 58.363 39.130 0.24 0.00 36.96 3.55
2677 3845 4.688879 TGATCTAAACACAACGTGATGGTC 59.311 41.667 0.24 0.00 36.96 4.02
2678 3846 4.330944 TCTAAACACAACGTGATGGTCT 57.669 40.909 0.24 0.00 36.96 3.85
2679 3847 5.456548 TCTAAACACAACGTGATGGTCTA 57.543 39.130 0.24 0.00 36.96 2.59
2680 3848 5.845103 TCTAAACACAACGTGATGGTCTAA 58.155 37.500 0.24 0.00 36.96 2.10
2681 3849 6.282167 TCTAAACACAACGTGATGGTCTAAA 58.718 36.000 0.24 0.00 36.96 1.85
2682 3850 4.806342 AACACAACGTGATGGTCTAAAC 57.194 40.909 0.24 0.00 36.96 2.01
2683 3851 2.798283 ACACAACGTGATGGTCTAAACG 59.202 45.455 0.24 0.00 41.64 3.60
2684 3852 1.796459 ACAACGTGATGGTCTAAACGC 59.204 47.619 0.00 0.00 39.58 4.84
2685 3853 2.066262 CAACGTGATGGTCTAAACGCT 58.934 47.619 0.00 0.00 39.58 5.07
2686 3854 1.992170 ACGTGATGGTCTAAACGCTC 58.008 50.000 0.00 0.00 39.58 5.03
2687 3855 1.544691 ACGTGATGGTCTAAACGCTCT 59.455 47.619 0.00 0.00 39.58 4.09
2738 3908 2.051334 TATTTCATTGCGGAGGGGTG 57.949 50.000 0.00 0.00 0.00 4.61
2755 3925 5.805728 AGGGGTGTTTATAAGTCAGTCTTG 58.194 41.667 0.00 0.00 37.56 3.02
2770 3945 3.003689 CAGTCTTGCCTTTGGTTGTGTAG 59.996 47.826 0.00 0.00 0.00 2.74
2782 3958 8.410141 CCTTTGGTTGTGTAGATTACAAGAAAA 58.590 33.333 0.00 0.00 40.93 2.29
2799 3976 7.397970 ACAAGAAAATTACGCATTTGTGTTTG 58.602 30.769 1.62 2.26 39.74 2.93
2812 3989 8.444715 CGCATTTGTGTTTGTATAAGTTAGGTA 58.555 33.333 0.00 0.00 0.00 3.08
2849 4026 8.268850 AGTTGATGAGGTTATTTGTATGTGTC 57.731 34.615 0.00 0.00 0.00 3.67
2990 4197 7.114106 CGTGATACATGTGCTAAGACTTCATAG 59.886 40.741 9.11 0.00 0.00 2.23
2995 4202 7.484975 ACATGTGCTAAGACTTCATAGACTAC 58.515 38.462 0.00 0.00 0.00 2.73
2996 4203 7.340743 ACATGTGCTAAGACTTCATAGACTACT 59.659 37.037 0.00 0.00 0.00 2.57
2997 4204 8.841300 CATGTGCTAAGACTTCATAGACTACTA 58.159 37.037 0.00 0.00 0.00 1.82
3008 4215 5.941788 TCATAGACTACTAGATGGCAGTCA 58.058 41.667 0.00 0.00 39.90 3.41
3046 4253 4.511617 TTTCTGTGTTTTGTGCTGTCAA 57.488 36.364 0.00 0.00 0.00 3.18
3127 4334 7.307101 GCTTAATGCTAAGACTTCATGCTAGTC 60.307 40.741 15.87 15.87 37.32 2.59
3135 4342 2.590007 CATGCTAGTCGGCAGCCC 60.590 66.667 5.63 0.00 45.75 5.19
3151 4358 0.871722 GCCCGTTCAAAATTTTGGCC 59.128 50.000 26.45 17.24 38.66 5.36
3175 4382 5.943349 TTTTGAGGAGTACCGGAATATCA 57.057 39.130 9.46 1.19 41.83 2.15
3244 4468 6.380079 AGGATAAAGTAGGCATATTCCCAG 57.620 41.667 0.00 0.00 0.00 4.45
3255 4481 9.127277 GTAGGCATATTCCCAGTACAAAATTTA 57.873 33.333 0.00 0.00 0.00 1.40
3286 4512 6.126796 TGTGAATATTTGCCTGTCTGAGGATA 60.127 38.462 0.00 0.00 46.33 2.59
3291 4517 1.688735 TGCCTGTCTGAGGATATTCCG 59.311 52.381 0.00 0.00 46.33 4.30
3298 4524 6.407074 CCTGTCTGAGGATATTCCGTTACTTT 60.407 42.308 0.00 0.00 46.33 2.66
3299 4525 6.338146 TGTCTGAGGATATTCCGTTACTTTG 58.662 40.000 0.00 0.00 42.75 2.77
3300 4526 6.153851 TGTCTGAGGATATTCCGTTACTTTGA 59.846 38.462 0.00 0.00 42.75 2.69
3301 4527 7.039882 GTCTGAGGATATTCCGTTACTTTGAA 58.960 38.462 0.00 0.00 42.75 2.69
3302 4528 7.548075 GTCTGAGGATATTCCGTTACTTTGAAA 59.452 37.037 0.00 0.00 42.75 2.69
3303 4529 8.098286 TCTGAGGATATTCCGTTACTTTGAAAA 58.902 33.333 0.00 0.00 42.75 2.29
3304 4530 8.036273 TGAGGATATTCCGTTACTTTGAAAAC 57.964 34.615 0.00 0.00 42.75 2.43
3305 4531 7.662258 TGAGGATATTCCGTTACTTTGAAAACA 59.338 33.333 0.00 0.00 42.75 2.83
3306 4532 8.398878 AGGATATTCCGTTACTTTGAAAACAA 57.601 30.769 0.00 0.00 42.75 2.83
3307 4533 8.294577 AGGATATTCCGTTACTTTGAAAACAAC 58.705 33.333 0.00 0.00 42.75 3.32
3308 4534 8.294577 GGATATTCCGTTACTTTGAAAACAACT 58.705 33.333 0.00 0.00 0.00 3.16
3311 4537 7.614124 TTCCGTTACTTTGAAAACAACTAGT 57.386 32.000 0.00 0.00 0.00 2.57
3312 4538 7.237920 TCCGTTACTTTGAAAACAACTAGTC 57.762 36.000 0.00 0.00 0.00 2.59
3313 4539 6.817641 TCCGTTACTTTGAAAACAACTAGTCA 59.182 34.615 0.00 0.00 0.00 3.41
3314 4540 7.496591 TCCGTTACTTTGAAAACAACTAGTCAT 59.503 33.333 0.00 0.00 0.00 3.06
3315 4541 8.767085 CCGTTACTTTGAAAACAACTAGTCATA 58.233 33.333 0.00 0.00 0.00 2.15
3316 4542 9.577003 CGTTACTTTGAAAACAACTAGTCATAC 57.423 33.333 0.00 0.00 0.00 2.39
3317 4543 9.874215 GTTACTTTGAAAACAACTAGTCATACC 57.126 33.333 0.00 0.00 0.00 2.73
3318 4544 9.841295 TTACTTTGAAAACAACTAGTCATACCT 57.159 29.630 0.00 0.00 0.00 3.08
3319 4545 8.747538 ACTTTGAAAACAACTAGTCATACCTT 57.252 30.769 0.00 0.00 0.00 3.50
3320 4546 8.837389 ACTTTGAAAACAACTAGTCATACCTTC 58.163 33.333 0.00 0.00 0.00 3.46
3321 4547 8.974060 TTTGAAAACAACTAGTCATACCTTCT 57.026 30.769 0.00 0.00 0.00 2.85
3322 4548 8.603242 TTGAAAACAACTAGTCATACCTTCTC 57.397 34.615 0.00 0.00 0.00 2.87
3323 4549 7.732025 TGAAAACAACTAGTCATACCTTCTCA 58.268 34.615 0.00 0.00 0.00 3.27
3324 4550 8.208224 TGAAAACAACTAGTCATACCTTCTCAA 58.792 33.333 0.00 0.00 0.00 3.02
3325 4551 8.608844 AAAACAACTAGTCATACCTTCTCAAG 57.391 34.615 0.00 0.00 0.00 3.02
3326 4552 7.540474 AACAACTAGTCATACCTTCTCAAGA 57.460 36.000 0.00 0.00 0.00 3.02
3327 4553 7.540474 ACAACTAGTCATACCTTCTCAAGAA 57.460 36.000 0.00 0.00 0.00 2.52
3328 4554 7.963532 ACAACTAGTCATACCTTCTCAAGAAA 58.036 34.615 0.00 0.00 33.07 2.52
3329 4555 8.429641 ACAACTAGTCATACCTTCTCAAGAAAA 58.570 33.333 0.00 0.00 33.07 2.29
3330 4556 9.273016 CAACTAGTCATACCTTCTCAAGAAAAA 57.727 33.333 0.00 0.00 33.07 1.94
3332 4558 9.660180 ACTAGTCATACCTTCTCAAGAAAAATC 57.340 33.333 0.00 0.00 33.07 2.17
3333 4559 9.658799 CTAGTCATACCTTCTCAAGAAAAATCA 57.341 33.333 0.00 0.00 33.07 2.57
3334 4560 8.329203 AGTCATACCTTCTCAAGAAAAATCAC 57.671 34.615 0.00 0.00 33.07 3.06
3335 4561 7.939039 AGTCATACCTTCTCAAGAAAAATCACA 59.061 33.333 0.00 0.00 33.07 3.58
3336 4562 8.734386 GTCATACCTTCTCAAGAAAAATCACAT 58.266 33.333 0.00 0.00 33.07 3.21
3337 4563 8.733458 TCATACCTTCTCAAGAAAAATCACATG 58.267 33.333 0.00 0.00 33.07 3.21
3338 4564 6.966534 ACCTTCTCAAGAAAAATCACATGT 57.033 33.333 0.00 0.00 33.07 3.21
3339 4565 7.352079 ACCTTCTCAAGAAAAATCACATGTT 57.648 32.000 0.00 0.00 33.07 2.71
3340 4566 7.205297 ACCTTCTCAAGAAAAATCACATGTTG 58.795 34.615 0.00 0.00 33.07 3.33
3341 4567 7.068593 ACCTTCTCAAGAAAAATCACATGTTGA 59.931 33.333 0.00 0.00 34.23 3.18
3342 4568 7.922278 CCTTCTCAAGAAAAATCACATGTTGAA 59.078 33.333 0.00 0.00 33.72 2.69
3343 4569 9.472361 CTTCTCAAGAAAAATCACATGTTGAAT 57.528 29.630 0.00 0.00 33.72 2.57
3344 4570 9.820725 TTCTCAAGAAAAATCACATGTTGAATT 57.179 25.926 0.00 0.00 37.92 2.17
3345 4571 9.820725 TCTCAAGAAAAATCACATGTTGAATTT 57.179 25.926 0.00 0.10 38.73 1.82
3370 4596 4.965119 AAAATTGCGGGTAAGATGACTC 57.035 40.909 0.00 0.00 0.00 3.36
3371 4597 3.914426 AATTGCGGGTAAGATGACTCT 57.086 42.857 0.00 0.00 0.00 3.24
3372 4598 3.914426 ATTGCGGGTAAGATGACTCTT 57.086 42.857 0.00 0.00 44.06 2.85
3373 4599 5.353394 AATTGCGGGTAAGATGACTCTTA 57.647 39.130 0.00 0.00 41.91 2.10
3374 4600 4.811969 TTGCGGGTAAGATGACTCTTAA 57.188 40.909 0.00 0.00 43.77 1.85
3375 4601 4.811969 TGCGGGTAAGATGACTCTTAAA 57.188 40.909 0.00 0.00 43.77 1.52
3376 4602 5.353394 TGCGGGTAAGATGACTCTTAAAT 57.647 39.130 0.00 0.00 43.77 1.40
3377 4603 5.741011 TGCGGGTAAGATGACTCTTAAATT 58.259 37.500 0.00 0.00 43.77 1.82
3378 4604 6.177610 TGCGGGTAAGATGACTCTTAAATTT 58.822 36.000 0.00 0.00 43.77 1.82
3379 4605 7.332557 TGCGGGTAAGATGACTCTTAAATTTA 58.667 34.615 0.00 0.00 43.77 1.40
3380 4606 7.990886 TGCGGGTAAGATGACTCTTAAATTTAT 59.009 33.333 0.00 0.00 43.77 1.40
3381 4607 8.837389 GCGGGTAAGATGACTCTTAAATTTATT 58.163 33.333 0.00 0.00 43.77 1.40
3410 4636 9.691362 TTTATTTTGCTCAAAGGAGTTTCATAC 57.309 29.630 0.00 0.00 43.37 2.39
3411 4637 6.959639 TTTTGCTCAAAGGAGTTTCATACT 57.040 33.333 0.00 0.00 43.37 2.12
3422 4648 4.709250 GAGTTTCATACTCCCTCCAATCC 58.291 47.826 0.00 0.00 46.30 3.01
3423 4649 4.111577 AGTTTCATACTCCCTCCAATCCA 58.888 43.478 0.00 0.00 28.23 3.41
3424 4650 4.540099 AGTTTCATACTCCCTCCAATCCAA 59.460 41.667 0.00 0.00 28.23 3.53
3425 4651 5.015178 AGTTTCATACTCCCTCCAATCCAAA 59.985 40.000 0.00 0.00 28.23 3.28
3426 4652 5.732331 TTCATACTCCCTCCAATCCAAAT 57.268 39.130 0.00 0.00 0.00 2.32
3427 4653 5.732331 TCATACTCCCTCCAATCCAAATT 57.268 39.130 0.00 0.00 0.00 1.82
3428 4654 6.840090 TCATACTCCCTCCAATCCAAATTA 57.160 37.500 0.00 0.00 0.00 1.40
3429 4655 6.841601 TCATACTCCCTCCAATCCAAATTAG 58.158 40.000 0.00 0.00 0.00 1.73
3430 4656 3.903467 ACTCCCTCCAATCCAAATTAGC 58.097 45.455 0.00 0.00 0.00 3.09
3431 4657 3.529319 ACTCCCTCCAATCCAAATTAGCT 59.471 43.478 0.00 0.00 0.00 3.32
3432 4658 4.726825 ACTCCCTCCAATCCAAATTAGCTA 59.273 41.667 0.00 0.00 0.00 3.32
3433 4659 5.048846 TCCCTCCAATCCAAATTAGCTAC 57.951 43.478 0.00 0.00 0.00 3.58
3434 4660 4.141251 TCCCTCCAATCCAAATTAGCTACC 60.141 45.833 0.00 0.00 0.00 3.18
3435 4661 4.386312 CCCTCCAATCCAAATTAGCTACCA 60.386 45.833 0.00 0.00 0.00 3.25
3436 4662 5.388654 CCTCCAATCCAAATTAGCTACCAT 58.611 41.667 0.00 0.00 0.00 3.55
3437 4663 5.242393 CCTCCAATCCAAATTAGCTACCATG 59.758 44.000 0.00 0.00 0.00 3.66
3438 4664 5.765510 TCCAATCCAAATTAGCTACCATGT 58.234 37.500 0.00 0.00 0.00 3.21
3439 4665 5.827797 TCCAATCCAAATTAGCTACCATGTC 59.172 40.000 0.00 0.00 0.00 3.06
3440 4666 5.593909 CCAATCCAAATTAGCTACCATGTCA 59.406 40.000 0.00 0.00 0.00 3.58
3441 4667 6.238842 CCAATCCAAATTAGCTACCATGTCAG 60.239 42.308 0.00 0.00 0.00 3.51
3442 4668 5.435686 TCCAAATTAGCTACCATGTCAGT 57.564 39.130 0.00 0.00 0.00 3.41
3443 4669 5.815581 TCCAAATTAGCTACCATGTCAGTT 58.184 37.500 0.00 0.00 0.00 3.16
3444 4670 5.647658 TCCAAATTAGCTACCATGTCAGTTG 59.352 40.000 0.00 0.00 0.00 3.16
3445 4671 5.415701 CCAAATTAGCTACCATGTCAGTTGT 59.584 40.000 0.00 0.00 0.00 3.32
3446 4672 6.071952 CCAAATTAGCTACCATGTCAGTTGTT 60.072 38.462 0.00 0.00 0.00 2.83
3447 4673 7.370383 CAAATTAGCTACCATGTCAGTTGTTT 58.630 34.615 0.00 0.00 0.00 2.83
3448 4674 5.940192 TTAGCTACCATGTCAGTTGTTTG 57.060 39.130 0.00 0.00 0.00 2.93
3449 4675 4.085357 AGCTACCATGTCAGTTGTTTGA 57.915 40.909 0.00 0.00 0.00 2.69
3450 4676 3.815401 AGCTACCATGTCAGTTGTTTGAC 59.185 43.478 0.00 0.00 46.02 3.18
3451 4677 3.815401 GCTACCATGTCAGTTGTTTGACT 59.185 43.478 7.56 0.00 46.00 3.41
3452 4678 4.083802 GCTACCATGTCAGTTGTTTGACTC 60.084 45.833 7.56 0.00 46.00 3.36
3453 4679 3.884895 ACCATGTCAGTTGTTTGACTCA 58.115 40.909 7.56 0.00 46.00 3.41
3454 4680 4.464008 ACCATGTCAGTTGTTTGACTCAT 58.536 39.130 7.56 0.00 46.00 2.90
3455 4681 5.620206 ACCATGTCAGTTGTTTGACTCATA 58.380 37.500 7.56 0.00 46.00 2.15
3456 4682 6.240894 ACCATGTCAGTTGTTTGACTCATAT 58.759 36.000 7.56 0.00 46.00 1.78
3457 4683 6.149973 ACCATGTCAGTTGTTTGACTCATATG 59.850 38.462 7.56 0.00 46.00 1.78
3458 4684 6.372381 CCATGTCAGTTGTTTGACTCATATGA 59.628 38.462 5.07 5.07 46.00 2.15
3459 4685 6.785488 TGTCAGTTGTTTGACTCATATGAC 57.215 37.500 0.00 0.00 46.00 3.06
3460 4686 6.524734 TGTCAGTTGTTTGACTCATATGACT 58.475 36.000 0.00 0.00 46.00 3.41
3461 4687 6.424812 TGTCAGTTGTTTGACTCATATGACTG 59.575 38.462 0.00 5.29 46.00 3.51
3462 4688 5.934043 TCAGTTGTTTGACTCATATGACTGG 59.066 40.000 0.00 0.00 34.36 4.00
3463 4689 5.934043 CAGTTGTTTGACTCATATGACTGGA 59.066 40.000 0.00 0.00 0.00 3.86
3464 4690 5.934625 AGTTGTTTGACTCATATGACTGGAC 59.065 40.000 0.00 0.00 0.00 4.02
3465 4691 4.832248 TGTTTGACTCATATGACTGGACC 58.168 43.478 0.00 0.00 0.00 4.46
3466 4692 3.801114 TTGACTCATATGACTGGACCG 57.199 47.619 0.00 0.00 0.00 4.79
3467 4693 2.735151 TGACTCATATGACTGGACCGT 58.265 47.619 0.00 0.00 0.00 4.83
3468 4694 2.427095 TGACTCATATGACTGGACCGTG 59.573 50.000 0.00 0.00 0.00 4.94
3469 4695 2.427453 GACTCATATGACTGGACCGTGT 59.573 50.000 0.00 0.00 0.00 4.49
3470 4696 3.628008 ACTCATATGACTGGACCGTGTA 58.372 45.455 0.00 0.00 0.00 2.90
3471 4697 3.632604 ACTCATATGACTGGACCGTGTAG 59.367 47.826 0.00 0.00 0.00 2.74
3472 4698 3.883489 CTCATATGACTGGACCGTGTAGA 59.117 47.826 0.00 0.00 0.00 2.59
3473 4699 4.470602 TCATATGACTGGACCGTGTAGAT 58.529 43.478 0.00 0.00 0.00 1.98
3474 4700 4.893524 TCATATGACTGGACCGTGTAGATT 59.106 41.667 0.00 0.00 0.00 2.40
3475 4701 5.362717 TCATATGACTGGACCGTGTAGATTT 59.637 40.000 0.00 0.00 0.00 2.17
3476 4702 4.553330 ATGACTGGACCGTGTAGATTTT 57.447 40.909 0.00 0.00 0.00 1.82
3477 4703 4.345859 TGACTGGACCGTGTAGATTTTT 57.654 40.909 0.00 0.00 0.00 1.94
3501 4727 5.438821 TTGTAACGATCCGTATTTTCGTG 57.561 39.130 0.00 0.00 44.62 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.242572 CCTCGATGCACATGAGCGG 61.243 63.158 10.61 1.33 37.31 5.52
47 48 5.485708 TCATCCGATCTAGGAGACTCAGATA 59.514 44.000 4.53 0.00 44.55 1.98
53 54 3.696045 CCATCATCCGATCTAGGAGACT 58.304 50.000 0.00 0.00 44.55 3.24
65 66 2.120909 AAAAGCCCGCCATCATCCG 61.121 57.895 0.00 0.00 0.00 4.18
78 79 1.172812 AGGGAGAACGGCACAAAAGC 61.173 55.000 0.00 0.00 0.00 3.51
103 104 0.680618 CTGCTCCAAAACAATGCCCA 59.319 50.000 0.00 0.00 0.00 5.36
153 154 5.404366 TCTTCAACGCAGTAGATGTAACAAC 59.596 40.000 0.00 0.00 45.00 3.32
189 190 2.433145 CCACTGCATCACGTCGCT 60.433 61.111 0.00 0.00 0.00 4.93
190 191 2.432456 TCCACTGCATCACGTCGC 60.432 61.111 0.00 0.00 0.00 5.19
192 193 0.244994 AGACTCCACTGCATCACGTC 59.755 55.000 0.00 0.00 0.00 4.34
194 195 0.244721 TGAGACTCCACTGCATCACG 59.755 55.000 0.00 0.00 0.00 4.35
213 214 0.391661 ATCAACCAGCATCGAACGCT 60.392 50.000 6.87 6.87 41.47 5.07
241 242 1.152984 CAGACAACACCACCAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
242 243 1.148273 TCAGACAACACCACCAGCC 59.852 57.895 0.00 0.00 0.00 4.85
243 244 1.498865 CGTCAGACAACACCACCAGC 61.499 60.000 0.41 0.00 0.00 4.85
263 266 4.263018 ACTACCATCGACATCATCATGG 57.737 45.455 0.00 0.00 39.77 3.66
268 271 4.649674 ACTACCAACTACCATCGACATCAT 59.350 41.667 0.00 0.00 0.00 2.45
281 284 1.626825 GCCAGACCCAACTACCAACTA 59.373 52.381 0.00 0.00 0.00 2.24
282 285 0.400594 GCCAGACCCAACTACCAACT 59.599 55.000 0.00 0.00 0.00 3.16
283 286 0.109723 TGCCAGACCCAACTACCAAC 59.890 55.000 0.00 0.00 0.00 3.77
284 287 0.847373 TTGCCAGACCCAACTACCAA 59.153 50.000 0.00 0.00 0.00 3.67
285 288 0.400213 CTTGCCAGACCCAACTACCA 59.600 55.000 0.00 0.00 0.00 3.25
286 289 0.322546 CCTTGCCAGACCCAACTACC 60.323 60.000 0.00 0.00 0.00 3.18
287 290 0.400594 ACCTTGCCAGACCCAACTAC 59.599 55.000 0.00 0.00 0.00 2.73
288 291 0.690762 GACCTTGCCAGACCCAACTA 59.309 55.000 0.00 0.00 0.00 2.24
305 308 0.103208 AGAGGGATCGTCGCATTGAC 59.897 55.000 5.23 0.00 44.53 3.18
311 314 0.456221 TCTTCAAGAGGGATCGTCGC 59.544 55.000 0.00 0.00 0.00 5.19
324 327 4.705110 TCTTCCACTGTCCAATCTTCAA 57.295 40.909 0.00 0.00 0.00 2.69
326 329 3.944015 CCATCTTCCACTGTCCAATCTTC 59.056 47.826 0.00 0.00 0.00 2.87
337 340 1.380302 GCCACCACCATCTTCCACT 59.620 57.895 0.00 0.00 0.00 4.00
352 355 2.021068 GCACGCTCTAGGATCTGCCA 62.021 60.000 0.00 0.00 40.02 4.92
424 427 2.992689 TCACGAAGCCGCCCTACA 60.993 61.111 0.00 0.00 39.95 2.74
426 429 3.458163 CCTCACGAAGCCGCCCTA 61.458 66.667 0.00 0.00 39.95 3.53
433 436 3.876589 TTCGGTGGCCTCACGAAGC 62.877 63.158 20.34 2.10 44.50 3.86
434 437 0.673644 AATTCGGTGGCCTCACGAAG 60.674 55.000 25.36 5.97 44.50 3.79
435 438 0.609151 TAATTCGGTGGCCTCACGAA 59.391 50.000 24.25 24.25 44.50 3.85
436 439 0.174845 CTAATTCGGTGGCCTCACGA 59.825 55.000 3.32 8.71 44.50 4.35
437 440 0.174845 TCTAATTCGGTGGCCTCACG 59.825 55.000 3.32 6.09 44.50 4.35
438 441 2.158957 TCATCTAATTCGGTGGCCTCAC 60.159 50.000 3.32 0.00 42.91 3.51
439 442 2.115427 TCATCTAATTCGGTGGCCTCA 58.885 47.619 3.32 0.00 0.00 3.86
440 443 2.910688 TCATCTAATTCGGTGGCCTC 57.089 50.000 3.32 0.00 0.00 4.70
441 444 2.439507 ACATCATCTAATTCGGTGGCCT 59.560 45.455 3.32 0.00 0.00 5.19
442 445 2.549754 CACATCATCTAATTCGGTGGCC 59.450 50.000 0.00 0.00 0.00 5.36
443 446 2.031682 GCACATCATCTAATTCGGTGGC 60.032 50.000 0.00 0.00 0.00 5.01
444 447 2.221749 CGCACATCATCTAATTCGGTGG 59.778 50.000 0.00 0.00 0.00 4.61
445 448 2.866156 ACGCACATCATCTAATTCGGTG 59.134 45.455 0.00 0.00 0.00 4.94
446 449 3.179443 ACGCACATCATCTAATTCGGT 57.821 42.857 0.00 0.00 0.00 4.69
447 450 3.555547 TCAACGCACATCATCTAATTCGG 59.444 43.478 0.00 0.00 0.00 4.30
448 451 4.777140 TCAACGCACATCATCTAATTCG 57.223 40.909 0.00 0.00 0.00 3.34
449 452 4.908156 GCATCAACGCACATCATCTAATTC 59.092 41.667 0.00 0.00 0.00 2.17
450 453 4.336153 TGCATCAACGCACATCATCTAATT 59.664 37.500 0.00 0.00 36.86 1.40
451 454 3.878699 TGCATCAACGCACATCATCTAAT 59.121 39.130 0.00 0.00 36.86 1.73
452 455 3.269178 TGCATCAACGCACATCATCTAA 58.731 40.909 0.00 0.00 36.86 2.10
453 456 2.867975 CTGCATCAACGCACATCATCTA 59.132 45.455 0.00 0.00 36.86 1.98
454 457 1.669265 CTGCATCAACGCACATCATCT 59.331 47.619 0.00 0.00 36.86 2.90
455 458 1.399440 ACTGCATCAACGCACATCATC 59.601 47.619 0.00 0.00 36.86 2.92
456 459 1.399440 GACTGCATCAACGCACATCAT 59.601 47.619 0.00 0.00 36.86 2.45
457 460 0.798159 GACTGCATCAACGCACATCA 59.202 50.000 0.00 0.00 36.86 3.07
458 461 0.798159 TGACTGCATCAACGCACATC 59.202 50.000 0.00 0.00 36.86 3.06
459 462 0.800631 CTGACTGCATCAACGCACAT 59.199 50.000 0.00 0.00 36.69 3.21
464 467 1.672030 TGCCCTGACTGCATCAACG 60.672 57.895 0.00 0.00 36.69 4.10
496 499 4.574828 GGCGATCTATGTTGTTACACCAAT 59.425 41.667 0.00 0.00 37.03 3.16
497 500 3.936453 GGCGATCTATGTTGTTACACCAA 59.064 43.478 0.00 0.00 37.03 3.67
498 501 3.055747 TGGCGATCTATGTTGTTACACCA 60.056 43.478 0.00 0.00 37.03 4.17
499 502 3.527533 TGGCGATCTATGTTGTTACACC 58.472 45.455 0.00 0.00 37.03 4.16
500 503 4.430007 TCTGGCGATCTATGTTGTTACAC 58.570 43.478 0.00 0.00 37.03 2.90
501 504 4.729227 TCTGGCGATCTATGTTGTTACA 57.271 40.909 0.00 0.00 38.95 2.41
502 505 5.006746 CCTTTCTGGCGATCTATGTTGTTAC 59.993 44.000 0.00 0.00 0.00 2.50
503 506 5.116180 CCTTTCTGGCGATCTATGTTGTTA 58.884 41.667 0.00 0.00 0.00 2.41
504 507 3.941483 CCTTTCTGGCGATCTATGTTGTT 59.059 43.478 0.00 0.00 0.00 2.83
505 508 3.055094 ACCTTTCTGGCGATCTATGTTGT 60.055 43.478 0.00 0.00 40.22 3.32
506 509 3.310774 CACCTTTCTGGCGATCTATGTTG 59.689 47.826 0.00 0.00 40.22 3.33
507 510 3.535561 CACCTTTCTGGCGATCTATGTT 58.464 45.455 0.00 0.00 40.22 2.71
508 511 2.158900 CCACCTTTCTGGCGATCTATGT 60.159 50.000 0.00 0.00 40.22 2.29
509 512 2.487934 CCACCTTTCTGGCGATCTATG 58.512 52.381 0.00 0.00 40.22 2.23
510 513 2.918712 CCACCTTTCTGGCGATCTAT 57.081 50.000 0.00 0.00 40.22 1.98
518 521 1.928868 ATCCAAAGCCACCTTTCTGG 58.071 50.000 0.00 0.00 39.20 3.86
519 522 2.892852 TCAATCCAAAGCCACCTTTCTG 59.107 45.455 0.00 0.00 39.20 3.02
520 523 3.243359 TCAATCCAAAGCCACCTTTCT 57.757 42.857 0.00 0.00 39.20 2.52
521 524 4.541973 AATCAATCCAAAGCCACCTTTC 57.458 40.909 0.00 0.00 39.20 2.62
522 525 4.980339 AAATCAATCCAAAGCCACCTTT 57.020 36.364 0.00 0.00 41.86 3.11
523 526 4.980339 AAAATCAATCCAAAGCCACCTT 57.020 36.364 0.00 0.00 0.00 3.50
524 527 4.102996 ACAAAAATCAATCCAAAGCCACCT 59.897 37.500 0.00 0.00 0.00 4.00
525 528 4.388485 ACAAAAATCAATCCAAAGCCACC 58.612 39.130 0.00 0.00 0.00 4.61
526 529 7.671495 AATACAAAAATCAATCCAAAGCCAC 57.329 32.000 0.00 0.00 0.00 5.01
527 530 9.956640 ATAAATACAAAAATCAATCCAAAGCCA 57.043 25.926 0.00 0.00 0.00 4.75
543 546 8.748412 AGCATAGTCTGGCAAAATAAATACAAA 58.252 29.630 0.00 0.00 0.00 2.83
592 595 4.437390 GCCTGTGTATCAAACTATGCACAC 60.437 45.833 4.02 0.00 44.29 3.82
600 603 0.981183 TCGGGCCTGTGTATCAAACT 59.019 50.000 12.43 0.00 0.00 2.66
602 605 1.271856 TCTCGGGCCTGTGTATCAAA 58.728 50.000 12.43 0.00 0.00 2.69
604 607 1.271856 TTTCTCGGGCCTGTGTATCA 58.728 50.000 12.43 0.00 0.00 2.15
686 702 1.938585 TGTCCATCTTCTTCCCGACT 58.061 50.000 0.00 0.00 0.00 4.18
687 703 2.233922 TCTTGTCCATCTTCTTCCCGAC 59.766 50.000 0.00 0.00 0.00 4.79
709 725 1.635817 CCTTCCATCCACCCCACGAT 61.636 60.000 0.00 0.00 0.00 3.73
711 727 2.137177 AACCTTCCATCCACCCCACG 62.137 60.000 0.00 0.00 0.00 4.94
718 734 2.555227 GCCTTCTTCAACCTTCCATCCA 60.555 50.000 0.00 0.00 0.00 3.41
720 736 1.740025 CGCCTTCTTCAACCTTCCATC 59.260 52.381 0.00 0.00 0.00 3.51
721 737 1.614317 CCGCCTTCTTCAACCTTCCAT 60.614 52.381 0.00 0.00 0.00 3.41
755 771 1.947456 GTGGGCCGTTGGATCTTAATC 59.053 52.381 0.00 0.00 0.00 1.75
756 772 1.564348 AGTGGGCCGTTGGATCTTAAT 59.436 47.619 0.00 0.00 0.00 1.40
758 774 0.539986 GAGTGGGCCGTTGGATCTTA 59.460 55.000 0.00 0.00 0.00 2.10
759 775 1.299976 GAGTGGGCCGTTGGATCTT 59.700 57.895 0.00 0.00 0.00 2.40
760 776 1.903877 CTGAGTGGGCCGTTGGATCT 61.904 60.000 0.00 0.00 0.00 2.75
761 777 1.450312 CTGAGTGGGCCGTTGGATC 60.450 63.158 0.00 0.00 0.00 3.36
786 802 6.366332 AGCGCTCTTATATATTCAACCTTTCG 59.634 38.462 2.64 0.00 0.00 3.46
789 805 5.409826 GCAGCGCTCTTATATATTCAACCTT 59.590 40.000 7.13 0.00 0.00 3.50
791 807 4.932200 AGCAGCGCTCTTATATATTCAACC 59.068 41.667 7.13 0.00 30.62 3.77
792 808 7.763172 ATAGCAGCGCTCTTATATATTCAAC 57.237 36.000 7.13 0.00 40.44 3.18
795 811 7.133513 ACGTATAGCAGCGCTCTTATATATTC 58.866 38.462 7.13 0.59 40.44 1.75
796 812 7.028926 ACGTATAGCAGCGCTCTTATATATT 57.971 36.000 7.13 0.00 40.44 1.28
797 813 6.621316 ACGTATAGCAGCGCTCTTATATAT 57.379 37.500 7.13 2.45 40.44 0.86
798 814 6.292008 CGTACGTATAGCAGCGCTCTTATATA 60.292 42.308 7.13 5.15 40.44 0.86
799 815 4.966965 ACGTATAGCAGCGCTCTTATAT 57.033 40.909 7.13 6.19 40.44 0.86
801 817 3.424565 CGTACGTATAGCAGCGCTCTTAT 60.425 47.826 7.13 11.19 40.44 1.73
802 818 2.096565 CGTACGTATAGCAGCGCTCTTA 60.097 50.000 7.13 2.87 40.44 2.10
803 819 1.333881 CGTACGTATAGCAGCGCTCTT 60.334 52.381 7.13 0.00 40.44 2.85
804 820 0.235144 CGTACGTATAGCAGCGCTCT 59.765 55.000 7.13 10.92 40.44 4.09
805 821 0.234106 TCGTACGTATAGCAGCGCTC 59.766 55.000 16.05 2.24 40.44 5.03
807 823 1.248721 GATCGTACGTATAGCAGCGC 58.751 55.000 16.05 0.00 0.00 5.92
809 825 4.288531 AGTTTGATCGTACGTATAGCAGC 58.711 43.478 16.05 0.00 0.00 5.25
810 826 5.969435 TGAAGTTTGATCGTACGTATAGCAG 59.031 40.000 16.05 0.00 0.00 4.24
811 827 5.882553 TGAAGTTTGATCGTACGTATAGCA 58.117 37.500 16.05 1.77 0.00 3.49
812 828 6.988109 ATGAAGTTTGATCGTACGTATAGC 57.012 37.500 16.05 0.00 0.00 2.97
819 835 7.162062 GCAAAATCGTATGAAGTTTGATCGTAC 59.838 37.037 20.55 0.00 36.22 3.67
820 836 7.177407 GCAAAATCGTATGAAGTTTGATCGTA 58.823 34.615 20.55 0.00 36.22 3.43
821 837 6.021596 GCAAAATCGTATGAAGTTTGATCGT 58.978 36.000 20.55 0.00 36.22 3.73
822 838 5.167803 CGCAAAATCGTATGAAGTTTGATCG 59.832 40.000 20.55 14.27 36.22 3.69
823 839 6.021596 ACGCAAAATCGTATGAAGTTTGATC 58.978 36.000 20.55 8.94 41.36 2.92
824 840 5.938322 ACGCAAAATCGTATGAAGTTTGAT 58.062 33.333 20.55 10.16 41.36 2.57
825 841 5.351233 ACGCAAAATCGTATGAAGTTTGA 57.649 34.783 20.55 0.00 41.36 2.69
826 842 6.520449 GTACGCAAAATCGTATGAAGTTTG 57.480 37.500 15.32 15.32 45.16 2.93
834 850 2.532235 TGCTCGTACGCAAAATCGTAT 58.468 42.857 11.24 0.00 45.16 3.06
835 851 1.915350 CTGCTCGTACGCAAAATCGTA 59.085 47.619 11.24 0.00 43.15 3.43
836 852 0.713883 CTGCTCGTACGCAAAATCGT 59.286 50.000 11.24 0.00 45.49 3.73
837 853 0.989164 TCTGCTCGTACGCAAAATCG 59.011 50.000 11.24 0.00 39.80 3.34
838 854 1.993370 AGTCTGCTCGTACGCAAAATC 59.007 47.619 11.24 0.00 39.80 2.17
839 855 1.726791 CAGTCTGCTCGTACGCAAAAT 59.273 47.619 11.24 0.00 39.80 1.82
840 856 1.136690 CAGTCTGCTCGTACGCAAAA 58.863 50.000 11.24 0.00 39.80 2.44
841 857 0.031585 ACAGTCTGCTCGTACGCAAA 59.968 50.000 11.24 0.00 39.80 3.68
842 858 0.031585 AACAGTCTGCTCGTACGCAA 59.968 50.000 11.24 0.00 39.80 4.85
843 859 0.386858 GAACAGTCTGCTCGTACGCA 60.387 55.000 11.24 2.48 38.40 5.24
844 860 0.109689 AGAACAGTCTGCTCGTACGC 60.110 55.000 11.24 0.00 30.83 4.42
845 861 2.415857 ACTAGAACAGTCTGCTCGTACG 59.584 50.000 9.53 9.53 35.12 3.67
846 862 3.188873 ACACTAGAACAGTCTGCTCGTAC 59.811 47.826 0.00 0.00 34.26 3.67
847 863 3.409570 ACACTAGAACAGTCTGCTCGTA 58.590 45.455 0.00 0.00 34.26 3.43
848 864 2.231529 ACACTAGAACAGTCTGCTCGT 58.768 47.619 0.00 0.00 34.26 4.18
849 865 2.999507 ACACTAGAACAGTCTGCTCG 57.000 50.000 0.00 0.00 34.26 5.03
850 866 4.380023 CCACTACACTAGAACAGTCTGCTC 60.380 50.000 0.00 0.00 34.26 4.26
851 867 3.508012 CCACTACACTAGAACAGTCTGCT 59.492 47.826 0.00 0.00 34.26 4.24
852 868 3.367498 CCCACTACACTAGAACAGTCTGC 60.367 52.174 0.00 0.00 34.26 4.26
853 869 3.367498 GCCCACTACACTAGAACAGTCTG 60.367 52.174 0.00 0.00 34.26 3.51
854 870 2.826725 GCCCACTACACTAGAACAGTCT 59.173 50.000 0.00 0.00 34.26 3.24
855 871 2.094130 GGCCCACTACACTAGAACAGTC 60.094 54.545 0.00 0.00 34.26 3.51
856 872 1.900486 GGCCCACTACACTAGAACAGT 59.100 52.381 0.00 0.00 38.32 3.55
857 873 1.207329 GGGCCCACTACACTAGAACAG 59.793 57.143 19.95 0.00 0.00 3.16
858 874 1.272807 GGGCCCACTACACTAGAACA 58.727 55.000 19.95 0.00 0.00 3.18
859 875 1.272807 TGGGCCCACTACACTAGAAC 58.727 55.000 24.45 0.00 0.00 3.01
860 876 2.032965 TTGGGCCCACTACACTAGAA 57.967 50.000 28.70 1.58 0.00 2.10
861 877 1.626825 GTTTGGGCCCACTACACTAGA 59.373 52.381 28.70 2.55 0.00 2.43
862 878 1.674817 CGTTTGGGCCCACTACACTAG 60.675 57.143 28.70 9.09 0.00 2.57
863 879 0.322322 CGTTTGGGCCCACTACACTA 59.678 55.000 28.70 4.49 0.00 2.74
864 880 1.072505 CGTTTGGGCCCACTACACT 59.927 57.895 28.70 0.00 0.00 3.55
865 881 0.820482 AACGTTTGGGCCCACTACAC 60.820 55.000 28.70 17.82 0.00 2.90
866 882 0.820074 CAACGTTTGGGCCCACTACA 60.820 55.000 28.70 6.96 0.00 2.74
867 883 1.953772 CAACGTTTGGGCCCACTAC 59.046 57.895 28.70 24.15 0.00 2.73
868 884 4.484987 CAACGTTTGGGCCCACTA 57.515 55.556 28.70 13.72 0.00 2.74
882 898 2.983592 CACAGGCCCGTTCCCAAC 60.984 66.667 0.00 0.00 0.00 3.77
883 899 3.485346 GACACAGGCCCGTTCCCAA 62.485 63.158 0.00 0.00 0.00 4.12
884 900 3.948719 GACACAGGCCCGTTCCCA 61.949 66.667 0.00 0.00 0.00 4.37
885 901 3.192103 AAGACACAGGCCCGTTCCC 62.192 63.158 0.00 0.00 0.00 3.97
886 902 1.966451 CAAGACACAGGCCCGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
887 903 1.227853 ACAAGACACAGGCCCGTTC 60.228 57.895 0.00 0.00 0.00 3.95
888 904 1.227853 GACAAGACACAGGCCCGTT 60.228 57.895 0.00 0.00 0.00 4.44
889 905 2.426023 GACAAGACACAGGCCCGT 59.574 61.111 0.00 0.00 0.00 5.28
890 906 2.149803 TACGACAAGACACAGGCCCG 62.150 60.000 0.00 0.00 0.00 6.13
891 907 0.669625 GTACGACAAGACACAGGCCC 60.670 60.000 0.00 0.00 0.00 5.80
892 908 0.032952 TGTACGACAAGACACAGGCC 59.967 55.000 0.00 0.00 0.00 5.19
893 909 1.860676 TTGTACGACAAGACACAGGC 58.139 50.000 0.00 0.00 32.34 4.85
894 910 4.376008 CGATTTTGTACGACAAGACACAGG 60.376 45.833 0.00 0.00 39.53 4.00
895 911 4.208460 ACGATTTTGTACGACAAGACACAG 59.792 41.667 0.00 0.00 39.53 3.66
896 912 4.114073 ACGATTTTGTACGACAAGACACA 58.886 39.130 0.00 0.00 39.53 3.72
897 913 4.703899 ACGATTTTGTACGACAAGACAC 57.296 40.909 0.00 0.00 39.53 3.67
898 914 5.346551 CCATACGATTTTGTACGACAAGACA 59.653 40.000 0.00 0.00 39.53 3.41
899 915 5.220340 CCCATACGATTTTGTACGACAAGAC 60.220 44.000 0.00 0.00 39.53 3.01
900 916 4.865925 CCCATACGATTTTGTACGACAAGA 59.134 41.667 0.00 0.00 39.53 3.02
901 917 4.865925 TCCCATACGATTTTGTACGACAAG 59.134 41.667 0.00 0.00 39.53 3.16
902 918 4.818642 TCCCATACGATTTTGTACGACAA 58.181 39.130 0.00 0.00 36.11 3.18
903 919 4.453177 TCCCATACGATTTTGTACGACA 57.547 40.909 0.00 0.00 0.00 4.35
904 920 5.783100 TTTCCCATACGATTTTGTACGAC 57.217 39.130 0.00 0.00 0.00 4.34
905 921 6.798315 TTTTTCCCATACGATTTTGTACGA 57.202 33.333 0.00 0.00 0.00 3.43
906 922 9.377383 GATATTTTTCCCATACGATTTTGTACG 57.623 33.333 0.00 0.00 0.00 3.67
907 923 9.377383 CGATATTTTTCCCATACGATTTTGTAC 57.623 33.333 0.00 0.00 0.00 2.90
908 924 9.111613 ACGATATTTTTCCCATACGATTTTGTA 57.888 29.630 0.00 0.00 0.00 2.41
909 925 7.992008 ACGATATTTTTCCCATACGATTTTGT 58.008 30.769 0.00 0.00 0.00 2.83
910 926 9.377383 GTACGATATTTTTCCCATACGATTTTG 57.623 33.333 0.00 0.00 0.00 2.44
911 927 8.277713 CGTACGATATTTTTCCCATACGATTTT 58.722 33.333 10.44 0.00 37.04 1.82
912 928 7.569957 GCGTACGATATTTTTCCCATACGATTT 60.570 37.037 21.65 0.00 37.04 2.17
913 929 6.128742 GCGTACGATATTTTTCCCATACGATT 60.129 38.462 21.65 0.00 37.04 3.34
914 930 5.346822 GCGTACGATATTTTTCCCATACGAT 59.653 40.000 21.65 0.00 37.04 3.73
915 931 4.681025 GCGTACGATATTTTTCCCATACGA 59.319 41.667 21.65 0.00 37.04 3.43
916 932 4.445052 TGCGTACGATATTTTTCCCATACG 59.555 41.667 21.65 0.00 37.73 3.06
917 933 5.910637 TGCGTACGATATTTTTCCCATAC 57.089 39.130 21.65 0.00 0.00 2.39
918 934 5.467399 CCTTGCGTACGATATTTTTCCCATA 59.533 40.000 21.65 0.00 0.00 2.74
919 935 4.274950 CCTTGCGTACGATATTTTTCCCAT 59.725 41.667 21.65 0.00 0.00 4.00
920 936 3.623960 CCTTGCGTACGATATTTTTCCCA 59.376 43.478 21.65 0.00 0.00 4.37
921 937 3.547413 GCCTTGCGTACGATATTTTTCCC 60.547 47.826 21.65 0.00 0.00 3.97
922 938 3.064271 TGCCTTGCGTACGATATTTTTCC 59.936 43.478 21.65 0.00 0.00 3.13
923 939 4.201783 ACTGCCTTGCGTACGATATTTTTC 60.202 41.667 21.65 0.00 0.00 2.29
924 940 3.687698 ACTGCCTTGCGTACGATATTTTT 59.312 39.130 21.65 0.00 0.00 1.94
925 941 3.267483 ACTGCCTTGCGTACGATATTTT 58.733 40.909 21.65 0.00 0.00 1.82
926 942 2.901249 ACTGCCTTGCGTACGATATTT 58.099 42.857 21.65 0.00 0.00 1.40
927 943 2.596904 ACTGCCTTGCGTACGATATT 57.403 45.000 21.65 0.00 0.00 1.28
928 944 2.596904 AACTGCCTTGCGTACGATAT 57.403 45.000 21.65 0.00 0.00 1.63
929 945 2.373540 AAACTGCCTTGCGTACGATA 57.626 45.000 21.65 3.69 0.00 2.92
930 946 1.196808 CAAAACTGCCTTGCGTACGAT 59.803 47.619 21.65 0.00 0.00 3.73
931 947 0.584396 CAAAACTGCCTTGCGTACGA 59.416 50.000 21.65 0.80 0.00 3.43
932 948 0.584396 TCAAAACTGCCTTGCGTACG 59.416 50.000 11.84 11.84 0.00 3.67
933 949 2.766970 TTCAAAACTGCCTTGCGTAC 57.233 45.000 0.00 0.00 0.00 3.67
934 950 6.935741 ATATATTCAAAACTGCCTTGCGTA 57.064 33.333 0.00 0.00 0.00 4.42
935 951 5.835113 ATATATTCAAAACTGCCTTGCGT 57.165 34.783 0.00 0.00 0.00 5.24
936 952 7.192913 TGTTATATATTCAAAACTGCCTTGCG 58.807 34.615 0.00 0.00 0.00 4.85
937 953 7.168135 GCTGTTATATATTCAAAACTGCCTTGC 59.832 37.037 13.14 0.00 39.46 4.01
938 954 8.190122 TGCTGTTATATATTCAAAACTGCCTTG 58.810 33.333 17.98 0.00 42.58 3.61
939 955 8.292444 TGCTGTTATATATTCAAAACTGCCTT 57.708 30.769 17.98 0.00 42.58 4.35
940 956 7.013655 CCTGCTGTTATATATTCAAAACTGCCT 59.986 37.037 17.98 0.00 42.58 4.75
941 957 7.141363 CCTGCTGTTATATATTCAAAACTGCC 58.859 38.462 17.98 7.42 42.58 4.85
942 958 7.707104 ACCTGCTGTTATATATTCAAAACTGC 58.293 34.615 15.62 15.62 43.15 4.40
944 960 9.338622 GGTACCTGCTGTTATATATTCAAAACT 57.661 33.333 4.06 0.00 0.00 2.66
945 961 9.116067 TGGTACCTGCTGTTATATATTCAAAAC 57.884 33.333 14.36 0.00 0.00 2.43
946 962 9.116067 GTGGTACCTGCTGTTATATATTCAAAA 57.884 33.333 14.36 0.00 0.00 2.44
947 963 8.268605 TGTGGTACCTGCTGTTATATATTCAAA 58.731 33.333 14.36 0.00 0.00 2.69
960 976 0.973632 TGGTAGTGTGGTACCTGCTG 59.026 55.000 14.36 0.00 42.79 4.41
998 1014 1.310933 GGGTGCAGGACTCAGCATTG 61.311 60.000 0.00 0.00 43.44 2.82
1203 2229 1.384525 CGTTGAAGTGGGTGTGGAAA 58.615 50.000 0.00 0.00 0.00 3.13
1264 2290 3.861797 GGACATGCCGTCGGGGAT 61.862 66.667 14.38 0.00 46.67 3.85
1414 2440 1.213013 GCAGGTGAGTGTCGACGAT 59.787 57.895 11.62 0.86 0.00 3.73
1583 2609 7.012894 GGTCAATCGATCGATCCTAGAGATATT 59.987 40.741 29.48 8.61 34.42 1.28
1584 2610 6.485313 GGTCAATCGATCGATCCTAGAGATAT 59.515 42.308 29.48 8.35 34.42 1.63
1592 2618 1.615883 CAGGGTCAATCGATCGATCCT 59.384 52.381 29.48 26.07 33.08 3.24
1604 2630 1.110442 CTGCAACAAACCAGGGTCAA 58.890 50.000 0.00 0.00 0.00 3.18
1625 2652 1.826054 CTCCGTCTCCAGCTCCGAT 60.826 63.158 0.00 0.00 0.00 4.18
1730 2757 2.556287 GCTTTCACGGCTTCCACG 59.444 61.111 0.00 0.00 37.36 4.94
1735 2762 1.668151 GAGGACGCTTTCACGGCTT 60.668 57.895 0.00 0.00 42.13 4.35
1736 2763 2.048127 GAGGACGCTTTCACGGCT 60.048 61.111 0.00 0.00 42.13 5.52
1757 2784 4.715896 CGTCAAAAGTGTTGAGGATGATG 58.284 43.478 9.72 0.00 36.68 3.07
1758 2785 3.189287 GCGTCAAAAGTGTTGAGGATGAT 59.811 43.478 17.93 0.00 36.68 2.45
1760 2787 2.662791 CGCGTCAAAAGTGTTGAGGATG 60.663 50.000 17.93 6.91 36.68 3.51
1946 2973 1.080705 GCCGAAGCTCACGTACAGT 60.081 57.895 11.25 0.00 35.50 3.55
1973 3000 3.410628 TCCCTGGCCGACATGCAT 61.411 61.111 0.00 0.00 0.00 3.96
2478 3626 0.179702 AGTGCCAGCATGTGATCGAT 59.820 50.000 0.00 0.00 0.00 3.59
2503 3661 3.260783 TAAACGCGTACGGCCACGA 62.261 57.895 18.97 0.00 44.69 4.35
2643 3811 9.773328 CGTTGTGTTTAGATCATTCATGTTTAT 57.227 29.630 0.00 0.00 0.00 1.40
2644 3812 8.779303 ACGTTGTGTTTAGATCATTCATGTTTA 58.221 29.630 0.00 0.00 0.00 2.01
2645 3813 7.591057 CACGTTGTGTTTAGATCATTCATGTTT 59.409 33.333 0.00 0.00 0.00 2.83
2647 3815 6.426633 TCACGTTGTGTTTAGATCATTCATGT 59.573 34.615 0.00 0.00 34.79 3.21
2648 3816 6.830736 TCACGTTGTGTTTAGATCATTCATG 58.169 36.000 0.00 0.00 34.79 3.07
2664 3832 1.796459 GCGTTTAGACCATCACGTTGT 59.204 47.619 0.00 0.00 35.06 3.32
2666 3834 2.029290 AGAGCGTTTAGACCATCACGTT 60.029 45.455 0.00 0.00 35.06 3.99
2667 3835 1.544691 AGAGCGTTTAGACCATCACGT 59.455 47.619 0.00 0.00 35.06 4.49
2668 3836 2.279582 AGAGCGTTTAGACCATCACG 57.720 50.000 0.00 0.00 35.71 4.35
2669 3837 9.291664 GATATATAAGAGCGTTTAGACCATCAC 57.708 37.037 0.00 0.00 0.00 3.06
2670 3838 9.020731 TGATATATAAGAGCGTTTAGACCATCA 57.979 33.333 0.00 0.00 0.00 3.07
2671 3839 9.291664 GTGATATATAAGAGCGTTTAGACCATC 57.708 37.037 0.00 0.00 0.00 3.51
2672 3840 9.026121 AGTGATATATAAGAGCGTTTAGACCAT 57.974 33.333 0.00 0.00 0.00 3.55
2673 3841 8.405418 AGTGATATATAAGAGCGTTTAGACCA 57.595 34.615 0.00 0.00 0.00 4.02
2726 3894 2.306512 ACTTATAAACACCCCTCCGCAA 59.693 45.455 0.00 0.00 0.00 4.85
2727 3895 1.910671 ACTTATAAACACCCCTCCGCA 59.089 47.619 0.00 0.00 0.00 5.69
2728 3896 2.093341 TGACTTATAAACACCCCTCCGC 60.093 50.000 0.00 0.00 0.00 5.54
2755 3925 5.472137 TCTTGTAATCTACACAACCAAAGGC 59.528 40.000 0.00 0.00 38.63 4.35
2770 3945 8.911662 ACACAAATGCGTAATTTTCTTGTAATC 58.088 29.630 0.00 0.00 36.28 1.75
2799 3976 7.042797 TGTTCGTCCCATACCTAACTTATAC 57.957 40.000 0.00 0.00 0.00 1.47
2812 3989 3.338249 CTCATCAACTTGTTCGTCCCAT 58.662 45.455 0.00 0.00 0.00 4.00
2849 4026 3.428870 GCGTCAACCATACGAATATGAGG 59.571 47.826 0.00 0.00 42.90 3.86
2937 4118 6.469595 GTCTTCTCAACATGTATCACGAGTAC 59.530 42.308 0.00 0.00 0.00 2.73
2990 4197 5.907207 TGAATTGACTGCCATCTAGTAGTC 58.093 41.667 3.22 3.22 39.88 2.59
2995 4202 5.885230 TGTTTGAATTGACTGCCATCTAG 57.115 39.130 0.00 0.00 0.00 2.43
2996 4203 6.350361 CCAATGTTTGAATTGACTGCCATCTA 60.350 38.462 0.00 0.00 39.46 1.98
2997 4204 5.475719 CAATGTTTGAATTGACTGCCATCT 58.524 37.500 0.00 0.00 39.46 2.90
3008 4215 7.734942 ACACAGAAATACCCAATGTTTGAATT 58.265 30.769 0.00 0.00 0.00 2.17
3046 4253 7.746243 ATATATAGGAAGTGTGGATCATGCT 57.254 36.000 0.00 0.00 0.00 3.79
3127 4334 0.319469 AAATTTTGAACGGGCTGCCG 60.319 50.000 13.40 10.64 39.31 5.69
3144 4351 3.576550 GGTACTCCTCAAAATGGCCAAAA 59.423 43.478 10.96 0.00 0.00 2.44
3151 4358 6.288294 TGATATTCCGGTACTCCTCAAAATG 58.712 40.000 0.00 0.00 0.00 2.32
3175 4382 8.567285 AAAATCCAGTCTGAAATTTCGATACT 57.433 30.769 13.34 12.49 0.00 2.12
3232 4456 9.313118 CTTTAAATTTTGTACTGGGAATATGCC 57.687 33.333 0.00 0.00 0.00 4.40
3240 4464 9.757227 TTCACAATCTTTAAATTTTGTACTGGG 57.243 29.630 12.80 4.53 31.45 4.45
3255 4481 7.177216 TCAGACAGGCAAATATTCACAATCTTT 59.823 33.333 0.00 0.00 0.00 2.52
3259 4485 5.359009 CCTCAGACAGGCAAATATTCACAAT 59.641 40.000 0.00 0.00 34.56 2.71
3286 4512 8.217131 ACTAGTTGTTTTCAAAGTAACGGAAT 57.783 30.769 0.00 0.00 41.76 3.01
3291 4517 9.874215 GGTATGACTAGTTGTTTTCAAAGTAAC 57.126 33.333 0.00 0.00 41.76 2.50
3298 4524 7.732025 TGAGAAGGTATGACTAGTTGTTTTCA 58.268 34.615 0.00 0.00 0.00 2.69
3299 4525 8.603242 TTGAGAAGGTATGACTAGTTGTTTTC 57.397 34.615 0.00 0.00 0.00 2.29
3300 4526 8.429641 TCTTGAGAAGGTATGACTAGTTGTTTT 58.570 33.333 0.00 0.00 0.00 2.43
3301 4527 7.963532 TCTTGAGAAGGTATGACTAGTTGTTT 58.036 34.615 0.00 0.00 0.00 2.83
3302 4528 7.540474 TCTTGAGAAGGTATGACTAGTTGTT 57.460 36.000 0.00 0.00 0.00 2.83
3303 4529 7.540474 TTCTTGAGAAGGTATGACTAGTTGT 57.460 36.000 0.00 0.00 0.00 3.32
3304 4530 8.833231 TTTTCTTGAGAAGGTATGACTAGTTG 57.167 34.615 0.00 0.00 35.21 3.16
3306 4532 9.660180 GATTTTTCTTGAGAAGGTATGACTAGT 57.340 33.333 0.00 0.00 35.21 2.57
3307 4533 9.658799 TGATTTTTCTTGAGAAGGTATGACTAG 57.341 33.333 0.00 0.00 35.21 2.57
3308 4534 9.436957 GTGATTTTTCTTGAGAAGGTATGACTA 57.563 33.333 0.00 0.00 35.21 2.59
3309 4535 7.939039 TGTGATTTTTCTTGAGAAGGTATGACT 59.061 33.333 0.00 0.00 35.21 3.41
3310 4536 8.099364 TGTGATTTTTCTTGAGAAGGTATGAC 57.901 34.615 0.00 0.00 35.21 3.06
3311 4537 8.733458 CATGTGATTTTTCTTGAGAAGGTATGA 58.267 33.333 0.00 0.00 35.21 2.15
3312 4538 8.517878 ACATGTGATTTTTCTTGAGAAGGTATG 58.482 33.333 0.00 0.00 35.21 2.39
3313 4539 8.641498 ACATGTGATTTTTCTTGAGAAGGTAT 57.359 30.769 0.00 0.00 35.21 2.73
3314 4540 8.352201 CAACATGTGATTTTTCTTGAGAAGGTA 58.648 33.333 0.00 0.00 35.21 3.08
3315 4541 6.966534 ACATGTGATTTTTCTTGAGAAGGT 57.033 33.333 0.00 0.00 35.21 3.50
3316 4542 7.428020 TCAACATGTGATTTTTCTTGAGAAGG 58.572 34.615 0.00 0.00 35.21 3.46
3317 4543 8.861033 TTCAACATGTGATTTTTCTTGAGAAG 57.139 30.769 0.00 0.00 35.70 2.85
3318 4544 9.820725 AATTCAACATGTGATTTTTCTTGAGAA 57.179 25.926 0.00 0.00 35.70 2.87
3319 4545 9.820725 AAATTCAACATGTGATTTTTCTTGAGA 57.179 25.926 0.00 0.00 36.76 3.27
3348 4574 5.010282 AGAGTCATCTTACCCGCAATTTTT 58.990 37.500 0.00 0.00 28.57 1.94
3349 4575 4.589908 AGAGTCATCTTACCCGCAATTTT 58.410 39.130 0.00 0.00 28.57 1.82
3350 4576 4.222124 AGAGTCATCTTACCCGCAATTT 57.778 40.909 0.00 0.00 28.57 1.82
3351 4577 3.914426 AGAGTCATCTTACCCGCAATT 57.086 42.857 0.00 0.00 28.57 2.32
3352 4578 3.914426 AAGAGTCATCTTACCCGCAAT 57.086 42.857 0.00 0.00 44.14 3.56
3353 4579 4.811969 TTAAGAGTCATCTTACCCGCAA 57.188 40.909 0.00 0.00 45.57 4.85
3354 4580 4.811969 TTTAAGAGTCATCTTACCCGCA 57.188 40.909 0.00 0.00 45.57 5.69
3355 4581 6.679327 AAATTTAAGAGTCATCTTACCCGC 57.321 37.500 0.00 0.00 45.57 6.13
3384 4610 9.691362 GTATGAAACTCCTTTGAGCAAAATAAA 57.309 29.630 0.00 0.00 42.74 1.40
3385 4611 9.077885 AGTATGAAACTCCTTTGAGCAAAATAA 57.922 29.630 0.00 0.00 42.74 1.40
3386 4612 8.635765 AGTATGAAACTCCTTTGAGCAAAATA 57.364 30.769 0.00 0.00 42.74 1.40
3387 4613 7.530426 AGTATGAAACTCCTTTGAGCAAAAT 57.470 32.000 0.00 0.00 42.74 1.82
3388 4614 6.959639 AGTATGAAACTCCTTTGAGCAAAA 57.040 33.333 0.00 0.00 42.74 2.44
3401 4627 4.111577 TGGATTGGAGGGAGTATGAAACT 58.888 43.478 0.00 0.00 42.80 2.66
3402 4628 4.503714 TGGATTGGAGGGAGTATGAAAC 57.496 45.455 0.00 0.00 0.00 2.78
3403 4629 5.528600 TTTGGATTGGAGGGAGTATGAAA 57.471 39.130 0.00 0.00 0.00 2.69
3404 4630 5.732331 ATTTGGATTGGAGGGAGTATGAA 57.268 39.130 0.00 0.00 0.00 2.57
3405 4631 5.732331 AATTTGGATTGGAGGGAGTATGA 57.268 39.130 0.00 0.00 0.00 2.15
3406 4632 5.474876 GCTAATTTGGATTGGAGGGAGTATG 59.525 44.000 0.00 0.00 0.00 2.39
3407 4633 5.373854 AGCTAATTTGGATTGGAGGGAGTAT 59.626 40.000 0.00 0.00 0.00 2.12
3408 4634 4.726825 AGCTAATTTGGATTGGAGGGAGTA 59.273 41.667 0.00 0.00 0.00 2.59
3409 4635 3.529319 AGCTAATTTGGATTGGAGGGAGT 59.471 43.478 0.00 0.00 0.00 3.85
3410 4636 4.176120 AGCTAATTTGGATTGGAGGGAG 57.824 45.455 0.00 0.00 0.00 4.30
3411 4637 4.141251 GGTAGCTAATTTGGATTGGAGGGA 60.141 45.833 0.00 0.00 0.00 4.20
3412 4638 4.145052 GGTAGCTAATTTGGATTGGAGGG 58.855 47.826 0.00 0.00 0.00 4.30
3413 4639 4.792068 TGGTAGCTAATTTGGATTGGAGG 58.208 43.478 0.00 0.00 0.00 4.30
3414 4640 5.829924 ACATGGTAGCTAATTTGGATTGGAG 59.170 40.000 0.00 0.00 0.00 3.86
3415 4641 5.765510 ACATGGTAGCTAATTTGGATTGGA 58.234 37.500 0.00 0.00 0.00 3.53
3416 4642 5.593909 TGACATGGTAGCTAATTTGGATTGG 59.406 40.000 0.00 0.00 0.00 3.16
3417 4643 6.319658 ACTGACATGGTAGCTAATTTGGATTG 59.680 38.462 0.00 0.00 0.00 2.67
3418 4644 6.426587 ACTGACATGGTAGCTAATTTGGATT 58.573 36.000 0.00 0.00 0.00 3.01
3419 4645 6.006275 ACTGACATGGTAGCTAATTTGGAT 57.994 37.500 0.00 0.00 0.00 3.41
3420 4646 5.435686 ACTGACATGGTAGCTAATTTGGA 57.564 39.130 0.00 0.00 0.00 3.53
3421 4647 5.415701 ACAACTGACATGGTAGCTAATTTGG 59.584 40.000 0.00 0.00 0.00 3.28
3422 4648 6.500684 ACAACTGACATGGTAGCTAATTTG 57.499 37.500 0.00 0.00 0.00 2.32
3423 4649 7.230510 TCAAACAACTGACATGGTAGCTAATTT 59.769 33.333 0.00 0.00 0.00 1.82
3424 4650 6.714810 TCAAACAACTGACATGGTAGCTAATT 59.285 34.615 0.00 0.00 0.00 1.40
3425 4651 6.149474 GTCAAACAACTGACATGGTAGCTAAT 59.851 38.462 0.00 0.00 44.32 1.73
3426 4652 5.468746 GTCAAACAACTGACATGGTAGCTAA 59.531 40.000 0.00 0.00 44.32 3.09
3427 4653 4.994852 GTCAAACAACTGACATGGTAGCTA 59.005 41.667 0.00 0.00 44.32 3.32
3428 4654 3.815401 GTCAAACAACTGACATGGTAGCT 59.185 43.478 0.00 0.00 44.32 3.32
3429 4655 3.815401 AGTCAAACAACTGACATGGTAGC 59.185 43.478 6.51 0.00 46.81 3.58
3430 4656 5.056480 TGAGTCAAACAACTGACATGGTAG 58.944 41.667 6.51 0.00 46.81 3.18
3431 4657 5.029807 TGAGTCAAACAACTGACATGGTA 57.970 39.130 6.51 0.00 46.81 3.25
3432 4658 3.884895 TGAGTCAAACAACTGACATGGT 58.115 40.909 6.51 0.00 46.81 3.55
3433 4659 6.372381 TCATATGAGTCAAACAACTGACATGG 59.628 38.462 0.00 0.00 46.81 3.66
3434 4660 7.118825 AGTCATATGAGTCAAACAACTGACATG 59.881 37.037 5.42 0.00 46.81 3.21
3435 4661 7.118825 CAGTCATATGAGTCAAACAACTGACAT 59.881 37.037 10.23 0.00 46.81 3.06
3436 4662 6.424812 CAGTCATATGAGTCAAACAACTGACA 59.575 38.462 10.23 0.00 46.81 3.58
3437 4663 6.128445 CCAGTCATATGAGTCAAACAACTGAC 60.128 42.308 21.35 15.68 45.10 3.51
3438 4664 5.934043 CCAGTCATATGAGTCAAACAACTGA 59.066 40.000 21.35 7.64 34.89 3.41
3439 4665 5.934043 TCCAGTCATATGAGTCAAACAACTG 59.066 40.000 10.23 16.31 33.20 3.16
3440 4666 5.934625 GTCCAGTCATATGAGTCAAACAACT 59.065 40.000 10.23 0.00 0.00 3.16
3441 4667 5.122396 GGTCCAGTCATATGAGTCAAACAAC 59.878 44.000 10.23 3.32 0.00 3.32
3442 4668 5.245531 GGTCCAGTCATATGAGTCAAACAA 58.754 41.667 10.23 0.00 0.00 2.83
3443 4669 4.620567 CGGTCCAGTCATATGAGTCAAACA 60.621 45.833 10.23 0.00 0.00 2.83
3444 4670 3.865745 CGGTCCAGTCATATGAGTCAAAC 59.134 47.826 10.23 8.57 0.00 2.93
3445 4671 3.513912 ACGGTCCAGTCATATGAGTCAAA 59.486 43.478 10.23 0.00 0.00 2.69
3446 4672 3.096852 ACGGTCCAGTCATATGAGTCAA 58.903 45.455 10.23 0.00 0.00 3.18
3447 4673 2.427095 CACGGTCCAGTCATATGAGTCA 59.573 50.000 10.23 0.00 0.00 3.41
3448 4674 2.427453 ACACGGTCCAGTCATATGAGTC 59.573 50.000 10.23 0.00 0.00 3.36
3449 4675 2.457598 ACACGGTCCAGTCATATGAGT 58.542 47.619 5.42 6.42 0.00 3.41
3450 4676 3.883489 TCTACACGGTCCAGTCATATGAG 59.117 47.826 5.42 0.00 0.00 2.90
3451 4677 3.893521 TCTACACGGTCCAGTCATATGA 58.106 45.455 0.00 0.00 0.00 2.15
3452 4678 4.855715 ATCTACACGGTCCAGTCATATG 57.144 45.455 0.00 0.00 0.00 1.78
3453 4679 5.871396 AAATCTACACGGTCCAGTCATAT 57.129 39.130 0.00 0.00 0.00 1.78
3454 4680 5.670792 AAAATCTACACGGTCCAGTCATA 57.329 39.130 0.00 0.00 0.00 2.15
3455 4681 4.553330 AAAATCTACACGGTCCAGTCAT 57.447 40.909 0.00 0.00 0.00 3.06
3456 4682 4.345859 AAAAATCTACACGGTCCAGTCA 57.654 40.909 0.00 0.00 0.00 3.41
3476 4702 6.791299 CACGAAAATACGGATCGTTACAAAAA 59.209 34.615 0.00 0.00 46.66 1.94
3477 4703 6.298103 CACGAAAATACGGATCGTTACAAAA 58.702 36.000 0.00 0.00 46.66 2.44
3478 4704 5.845576 CACGAAAATACGGATCGTTACAAA 58.154 37.500 0.00 0.00 46.66 2.83
3479 4705 5.438821 CACGAAAATACGGATCGTTACAA 57.561 39.130 0.00 0.00 46.66 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.