Multiple sequence alignment - TraesCS5D01G500300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G500300 chr5D 100.000 6190 0 0 1 6190 528978898 528972709 0.000000e+00 11431
1 TraesCS5D01G500300 chr5B 93.082 4597 173 48 1 4505 666207849 666203306 0.000000e+00 6593
2 TraesCS5D01G500300 chr5B 88.878 1043 59 29 4543 5535 666203302 666202267 0.000000e+00 1230
3 TraesCS5D01G500300 chr5B 85.882 170 9 2 5671 5825 666202268 666202099 3.840000e-37 167
4 TraesCS5D01G500300 chr5A 93.362 2546 133 23 3308 5838 657202949 657200425 0.000000e+00 3733
5 TraesCS5D01G500300 chr5A 92.678 2158 100 28 345 2469 657206020 657203888 0.000000e+00 3057
6 TraesCS5D01G500300 chr5A 94.226 762 35 8 2468 3228 657203724 657202971 0.000000e+00 1155


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G500300 chr5D 528972709 528978898 6189 True 11431.000000 11431 100.000000 1 6190 1 chr5D.!!$R1 6189
1 TraesCS5D01G500300 chr5B 666202099 666207849 5750 True 2663.333333 6593 89.280667 1 5825 3 chr5B.!!$R1 5824
2 TraesCS5D01G500300 chr5A 657200425 657206020 5595 True 2648.333333 3733 93.422000 345 5838 3 chr5A.!!$R1 5493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
708 740 0.935194 AGGAAGGGGACGGATCTAGT 59.065 55.0 0.0 0.0 0.00 2.57 F
1777 1899 0.389948 CACCTACAACACGCTCCTCC 60.390 60.0 0.0 0.0 0.00 4.30 F
2094 2216 0.525668 CATACCGTGTCCTGCTCGAC 60.526 60.0 0.0 0.0 36.31 4.20 F
2788 3079 0.745845 ACATGGAGATGCGCAAGTCC 60.746 55.0 26.8 26.8 41.68 3.85 F
3315 3612 1.502231 TGCTCGTCTGTTCTTTCAGC 58.498 50.0 0.0 0.0 35.63 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2261 0.171231 CAGCCGTTCTCATCTCACGA 59.829 55.000 0.00 0.0 35.93 4.35 R
3202 3493 0.036294 GGCGGCTCTAACTGAAGGTT 60.036 55.000 0.00 0.0 41.54 3.50 R
3815 4117 0.893727 ATCGGCCCACCTGAAAACAC 60.894 55.000 0.00 0.0 0.00 3.32 R
4535 4838 0.036952 GCACTGCACTGCTTCCTAGA 60.037 55.000 10.68 0.0 34.06 2.43 R
5300 5645 1.403780 GGTATGGTCGTTCTTGTCGCT 60.404 52.381 0.00 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.500684 TCTTGTAGGCATAAGAGCAAAAAG 57.499 37.500 0.00 0.00 35.83 2.27
100 103 6.313519 TCCTACAGCAAACTAAGATTCCAT 57.686 37.500 0.00 0.00 0.00 3.41
104 107 4.572389 ACAGCAAACTAAGATTCCATAGCG 59.428 41.667 0.00 0.00 0.00 4.26
105 108 3.561725 AGCAAACTAAGATTCCATAGCGC 59.438 43.478 0.00 0.00 0.00 5.92
110 113 7.293745 CAAACTAAGATTCCATAGCGCAATAG 58.706 38.462 11.47 0.00 0.00 1.73
115 118 5.555017 AGATTCCATAGCGCAATAGAACAT 58.445 37.500 11.47 0.00 0.00 2.71
116 119 5.641209 AGATTCCATAGCGCAATAGAACATC 59.359 40.000 11.47 3.22 0.00 3.06
117 120 4.335400 TCCATAGCGCAATAGAACATCA 57.665 40.909 11.47 0.00 0.00 3.07
118 121 4.058124 TCCATAGCGCAATAGAACATCAC 58.942 43.478 11.47 0.00 0.00 3.06
119 122 3.120889 CCATAGCGCAATAGAACATCACG 60.121 47.826 11.47 0.00 0.00 4.35
120 123 1.290203 AGCGCAATAGAACATCACGG 58.710 50.000 11.47 0.00 0.00 4.94
129 132 3.505464 AGAACATCACGGTAGTACAGC 57.495 47.619 2.06 0.00 0.00 4.40
134 137 3.384789 ACATCACGGTAGTACAGCATCAT 59.615 43.478 2.06 0.00 0.00 2.45
181 186 5.609423 AGAAGAATCTGAAGATGATTCCCG 58.391 41.667 11.39 0.00 46.43 5.14
196 201 1.753930 TCCCGCACACGATAGACTTA 58.246 50.000 0.00 0.00 43.93 2.24
199 204 3.056678 TCCCGCACACGATAGACTTAAAA 60.057 43.478 0.00 0.00 43.93 1.52
200 205 3.061697 CCCGCACACGATAGACTTAAAAC 59.938 47.826 0.00 0.00 43.93 2.43
230 236 3.624326 TCTGAAACCGCATTCAAGTTG 57.376 42.857 0.00 0.00 38.75 3.16
266 272 2.185867 GTAATGCTCACGCGGGGA 59.814 61.111 9.32 5.39 39.65 4.81
310 324 2.165845 GCGCCTACCGGATTCATAGTAT 59.834 50.000 9.46 0.00 37.44 2.12
311 325 3.734293 GCGCCTACCGGATTCATAGTATC 60.734 52.174 9.46 0.00 37.44 2.24
324 338 0.969149 TAGTATCCATCGGCTGCCTG 59.031 55.000 17.92 9.08 0.00 4.85
343 368 1.214062 CCGCTAGAGGCCGATGATC 59.786 63.158 0.00 0.00 37.74 2.92
358 389 6.294010 GGCCGATGATCCTAAGGAAAATAAAC 60.294 42.308 0.00 0.00 34.34 2.01
377 408 2.685380 AAGGCGGGAGGGTGAGAG 60.685 66.667 0.00 0.00 0.00 3.20
380 411 4.154347 GCGGGAGGGTGAGAGCTG 62.154 72.222 0.00 0.00 0.00 4.24
381 412 2.363018 CGGGAGGGTGAGAGCTGA 60.363 66.667 0.00 0.00 0.00 4.26
382 413 2.422231 CGGGAGGGTGAGAGCTGAG 61.422 68.421 0.00 0.00 0.00 3.35
383 414 1.000993 GGGAGGGTGAGAGCTGAGA 59.999 63.158 0.00 0.00 0.00 3.27
507 538 1.497278 CCGACATGGAGCAACAACG 59.503 57.895 0.00 0.00 42.00 4.10
530 561 2.202492 CGCGACAGACGAGGAAGG 60.202 66.667 0.00 0.00 45.77 3.46
624 656 2.198406 GGAAACCTCCAAAACGCAAAC 58.802 47.619 0.00 0.00 41.96 2.93
704 736 1.116536 GGAGAGGAAGGGGACGGATC 61.117 65.000 0.00 0.00 0.00 3.36
708 740 0.935194 AGGAAGGGGACGGATCTAGT 59.065 55.000 0.00 0.00 0.00 2.57
718 750 4.301027 GATCTAGTGGCGGCGGGG 62.301 72.222 9.78 0.00 0.00 5.73
730 762 4.551960 GCGGGGGAGGGGTAGCTA 62.552 72.222 0.00 0.00 0.00 3.32
731 763 2.203655 CGGGGGAGGGGTAGCTAG 60.204 72.222 0.00 0.00 0.00 3.42
732 764 3.034991 GGGGGAGGGGTAGCTAGT 58.965 66.667 0.00 0.00 0.00 2.57
733 765 1.459730 GGGGGAGGGGTAGCTAGTG 60.460 68.421 0.00 0.00 0.00 2.74
734 766 2.141448 GGGGAGGGGTAGCTAGTGC 61.141 68.421 0.00 0.00 40.05 4.40
735 767 2.499827 GGGAGGGGTAGCTAGTGCG 61.500 68.421 0.00 0.00 45.42 5.34
736 768 2.499827 GGAGGGGTAGCTAGTGCGG 61.500 68.421 0.00 0.00 45.42 5.69
737 769 2.444140 AGGGGTAGCTAGTGCGGG 60.444 66.667 0.00 0.00 45.42 6.13
738 770 2.443390 GGGGTAGCTAGTGCGGGA 60.443 66.667 0.00 0.00 45.42 5.14
739 771 2.499827 GGGGTAGCTAGTGCGGGAG 61.500 68.421 0.00 0.00 45.42 4.30
914 997 1.676967 CCCAACTCCCAAGCTGAGC 60.677 63.158 0.00 0.00 32.98 4.26
916 999 1.004560 CAACTCCCAAGCTGAGCGA 60.005 57.895 0.00 0.00 32.98 4.93
917 1000 1.018226 CAACTCCCAAGCTGAGCGAG 61.018 60.000 0.00 1.88 32.98 5.03
1777 1899 0.389948 CACCTACAACACGCTCCTCC 60.390 60.000 0.00 0.00 0.00 4.30
1778 1900 0.542232 ACCTACAACACGCTCCTCCT 60.542 55.000 0.00 0.00 0.00 3.69
1836 1958 4.476410 CTGCTGCGCACCATGCTG 62.476 66.667 18.56 14.67 42.25 4.41
2094 2216 0.525668 CATACCGTGTCCTGCTCGAC 60.526 60.000 0.00 0.00 36.31 4.20
2169 2291 0.824759 GAACGGCTGTACCTCCAGAT 59.175 55.000 0.00 0.00 34.23 2.90
2458 2580 3.617263 CAGTCTACGAACCAAATACTGCC 59.383 47.826 0.00 0.00 0.00 4.85
2459 2581 2.934553 GTCTACGAACCAAATACTGCCC 59.065 50.000 0.00 0.00 0.00 5.36
2506 2796 6.400568 AGATAACCCTTTTGTGATGCAAATG 58.599 36.000 0.00 0.00 45.38 2.32
2507 2797 2.769893 ACCCTTTTGTGATGCAAATGC 58.230 42.857 0.00 0.00 45.38 3.56
2599 2890 0.924090 GCTTGCCAACGATAGAGACG 59.076 55.000 0.00 0.00 41.38 4.18
2620 2911 6.017109 AGACGTACAATTCTCTTGCAAATGTT 60.017 34.615 0.00 0.00 0.00 2.71
2710 3001 7.009907 GGCATTCAGAAAAGCAAAGATTCATAC 59.990 37.037 11.72 0.00 30.74 2.39
2788 3079 0.745845 ACATGGAGATGCGCAAGTCC 60.746 55.000 26.80 26.80 41.68 3.85
2833 3124 1.904771 TGAGGGGGTACTCAATGCG 59.095 57.895 0.00 0.00 44.03 4.73
2848 3139 3.338676 GCGTACTGCATAGCGGGC 61.339 66.667 2.60 0.00 45.45 6.13
2908 3199 1.977854 TCCAACATGACTGTGCCTAGT 59.022 47.619 0.00 0.00 35.22 2.57
2979 3270 7.390440 CAGGTATTGGTCAAACAGAACTATTCA 59.610 37.037 0.00 0.00 34.06 2.57
3006 3297 7.201732 CCTTTACAATCTGTCAAACTTCTGTGT 60.202 37.037 0.00 0.00 0.00 3.72
3105 3396 9.959749 GTTAAAAGATGTACAAACTTTGGATCA 57.040 29.630 22.75 10.24 34.70 2.92
3138 3429 5.733620 AAATCACAAAGCTGACCATCAAT 57.266 34.783 0.00 0.00 0.00 2.57
3202 3493 7.067496 AGGACAAGAGATTTACAAACTCTGA 57.933 36.000 0.00 0.00 40.28 3.27
3264 3560 7.992754 AGATTGCTAATCAGAGTTTGAACTT 57.007 32.000 10.26 0.00 39.77 2.66
3286 3583 3.192422 TGCAAGGGAACATAATCCAAACG 59.808 43.478 0.00 0.00 41.55 3.60
3315 3612 1.502231 TGCTCGTCTGTTCTTTCAGC 58.498 50.000 0.00 0.00 35.63 4.26
3364 3661 7.822822 GTCATTCTGTACTAGGGTATTTGTTGT 59.177 37.037 0.00 0.00 0.00 3.32
3477 3775 2.711009 TGGTCTTGATGGGTTTGACTCT 59.289 45.455 0.00 0.00 0.00 3.24
3521 3819 5.418676 CCCTTGCGTTTCCATAATGATTTT 58.581 37.500 0.00 0.00 0.00 1.82
3540 3838 2.685999 GCTGGGATTTCTGCCCCT 59.314 61.111 0.00 0.00 45.40 4.79
3559 3857 4.331968 CCCTTTTCCTTGTGTGTGCTATA 58.668 43.478 0.00 0.00 0.00 1.31
3570 3868 7.254898 CCTTGTGTGTGCTATATCTGGTATTTG 60.255 40.741 0.00 0.00 0.00 2.32
3589 3887 6.949578 ATTTGTCATGCTTAAATCGTTTGG 57.050 33.333 0.00 0.00 0.00 3.28
3590 3888 4.433186 TGTCATGCTTAAATCGTTTGGG 57.567 40.909 0.00 0.00 0.00 4.12
3591 3889 3.823873 TGTCATGCTTAAATCGTTTGGGT 59.176 39.130 0.00 0.00 0.00 4.51
3592 3890 4.083003 TGTCATGCTTAAATCGTTTGGGTC 60.083 41.667 0.00 0.00 0.00 4.46
3593 3891 4.156008 GTCATGCTTAAATCGTTTGGGTCT 59.844 41.667 0.00 0.00 0.00 3.85
3636 3936 2.035449 CCTGCATCATAGGCAACATTGG 59.965 50.000 0.00 0.00 41.39 3.16
3815 4117 4.850859 TTACTGCACCGTAATCGATTTG 57.149 40.909 17.19 9.52 39.71 2.32
3993 4295 3.265791 GGAAGGATGTGACTACAGCTTG 58.734 50.000 0.00 0.00 42.66 4.01
4104 4406 2.772287 CTCTTCCCTGAATTATCCCGC 58.228 52.381 0.00 0.00 0.00 6.13
4134 4436 2.100584 GCTGGTCTGGTCTCTAGATGTG 59.899 54.545 0.00 0.00 0.00 3.21
4284 4586 7.064134 TGTCAGTATGGCTCAATAAACTTTACG 59.936 37.037 0.00 0.00 44.57 3.18
4344 4646 5.390991 GCCTCTGTTGTTGTATTGTAAGCTC 60.391 44.000 0.00 0.00 0.00 4.09
4477 4780 5.751243 TCTGCTCACAAAAAGGAAGTTAC 57.249 39.130 0.00 0.00 0.00 2.50
4492 4795 5.480772 AGGAAGTTACTCTTAAGCTGCTGTA 59.519 40.000 1.35 0.00 36.40 2.74
4493 4796 5.577554 GGAAGTTACTCTTAAGCTGCTGTAC 59.422 44.000 1.35 0.00 36.40 2.90
4535 4838 2.927871 GCGCAATGCTCCTGTCATTTTT 60.928 45.455 0.30 0.00 41.73 1.94
4716 5020 2.645838 TTTCTGCAGAGCAAAGTCCT 57.354 45.000 17.43 0.00 38.41 3.85
4725 5029 4.275936 GCAGAGCAAAGTCCTTTTGTAAGA 59.724 41.667 2.11 0.00 46.35 2.10
4745 5049 8.090831 TGTAAGAGGAATCATTCGATATCCTTG 58.909 37.037 0.00 0.00 38.34 3.61
4748 5052 8.372877 AGAGGAATCATTCGATATCCTTGTAT 57.627 34.615 0.00 0.00 38.34 2.29
4826 5158 3.715628 TTTCTCTTGTTCTGCTTTGGC 57.284 42.857 0.00 0.00 39.26 4.52
4875 5207 2.247358 GGGAAATGGAGAAAAGCACCA 58.753 47.619 0.00 0.00 41.64 4.17
4887 5219 3.446442 AAAGCACCATCACAAGAGGAT 57.554 42.857 0.00 0.00 0.00 3.24
4919 5251 7.110155 TCTCAAAAGTTGTGTACTCCTTTCTT 58.890 34.615 0.00 0.00 35.54 2.52
5022 5354 1.451504 CAGGCGGCCATAGATTCCA 59.548 57.895 23.09 0.00 0.00 3.53
5097 5429 1.267261 CTCCTGGCTCGAAGGTATACG 59.733 57.143 1.65 0.00 36.14 3.06
5139 5477 4.115199 GCTCGGCCCATTCCACCT 62.115 66.667 0.00 0.00 0.00 4.00
5171 5512 6.289064 GTTGGTAGAAGAAGAAAAGGAGTCA 58.711 40.000 0.00 0.00 0.00 3.41
5300 5645 0.601057 TGTTCAGATCTTCACGCCGA 59.399 50.000 0.00 0.00 0.00 5.54
5323 5669 3.259064 CGACAAGAACGACCATACCATT 58.741 45.455 0.00 0.00 0.00 3.16
5344 5690 1.106351 TTTTGCAGCGGCTTCCTTGA 61.106 50.000 10.92 0.00 41.91 3.02
5385 5740 1.336517 GCTGCTGCTGAGAATTTTGCA 60.337 47.619 10.92 0.00 36.03 4.08
5434 5789 0.908198 GAGCTCCTGTCACCTTGGAT 59.092 55.000 0.87 0.00 0.00 3.41
5557 5912 2.285834 CGCCATCTCGTGCTTTTGATAC 60.286 50.000 0.00 0.00 0.00 2.24
5574 5929 3.621268 TGATACGGCAAGCATGAACTTAC 59.379 43.478 0.00 0.00 0.00 2.34
5613 5968 0.515564 AACGATGCCGCACTGTAAAC 59.484 50.000 0.00 0.00 39.95 2.01
5625 5980 2.034432 CACTGTAAACACATGGCAGCAA 59.966 45.455 0.00 0.00 0.00 3.91
5630 5985 1.518056 AACACATGGCAGCAACCTCG 61.518 55.000 0.00 0.00 0.00 4.63
5674 6029 2.776536 AGCATTTCTGGCAGAGGTAGAT 59.223 45.455 17.91 5.35 0.00 1.98
5676 6031 3.474600 CATTTCTGGCAGAGGTAGATGG 58.525 50.000 17.91 0.00 0.00 3.51
5686 6042 4.162509 GCAGAGGTAGATGGTAGGAGTTTT 59.837 45.833 0.00 0.00 0.00 2.43
5738 6094 1.102809 TGCTGGAGTGCTGGTGTTTG 61.103 55.000 0.00 0.00 0.00 2.93
5820 6191 3.503363 TGCACCTAGCTCAAATTCTTGTG 59.497 43.478 0.00 0.00 45.94 3.33
5825 6196 6.016777 CACCTAGCTCAAATTCTTGTGTTCTT 60.017 38.462 0.00 0.00 33.94 2.52
5838 6209 6.353323 TCTTGTGTTCTTTCTGTGGATTACA 58.647 36.000 0.00 0.00 37.78 2.41
5839 6210 6.998074 TCTTGTGTTCTTTCTGTGGATTACAT 59.002 34.615 0.00 0.00 38.92 2.29
5840 6211 6.558771 TGTGTTCTTTCTGTGGATTACATG 57.441 37.500 0.00 0.00 38.92 3.21
5841 6212 6.061441 TGTGTTCTTTCTGTGGATTACATGT 58.939 36.000 2.69 2.69 38.92 3.21
5842 6213 6.017192 TGTGTTCTTTCTGTGGATTACATGTG 60.017 38.462 9.11 0.00 38.92 3.21
5843 6214 6.204688 GTGTTCTTTCTGTGGATTACATGTGA 59.795 38.462 9.11 0.00 38.92 3.58
5844 6215 6.770303 TGTTCTTTCTGTGGATTACATGTGAA 59.230 34.615 9.11 0.00 38.92 3.18
5845 6216 7.448161 TGTTCTTTCTGTGGATTACATGTGAAT 59.552 33.333 9.11 4.52 38.92 2.57
5846 6217 7.381766 TCTTTCTGTGGATTACATGTGAATG 57.618 36.000 9.11 3.57 38.92 2.67
5847 6218 7.167535 TCTTTCTGTGGATTACATGTGAATGA 58.832 34.615 9.11 5.80 38.92 2.57
5848 6219 7.665145 TCTTTCTGTGGATTACATGTGAATGAA 59.335 33.333 9.11 0.00 38.92 2.57
5849 6220 6.990341 TCTGTGGATTACATGTGAATGAAG 57.010 37.500 9.11 0.00 38.92 3.02
5850 6221 5.882000 TCTGTGGATTACATGTGAATGAAGG 59.118 40.000 9.11 0.00 38.92 3.46
5851 6222 5.569355 TGTGGATTACATGTGAATGAAGGT 58.431 37.500 9.11 0.00 33.42 3.50
5852 6223 6.009589 TGTGGATTACATGTGAATGAAGGTT 58.990 36.000 9.11 0.00 33.42 3.50
5853 6224 6.072008 TGTGGATTACATGTGAATGAAGGTTG 60.072 38.462 9.11 0.00 33.42 3.77
5854 6225 6.150976 GTGGATTACATGTGAATGAAGGTTGA 59.849 38.462 9.11 0.00 0.00 3.18
5855 6226 6.375174 TGGATTACATGTGAATGAAGGTTGAG 59.625 38.462 9.11 0.00 0.00 3.02
5856 6227 6.375455 GGATTACATGTGAATGAAGGTTGAGT 59.625 38.462 9.11 0.00 0.00 3.41
5857 6228 6.558771 TTACATGTGAATGAAGGTTGAGTG 57.441 37.500 9.11 0.00 0.00 3.51
5858 6229 4.717877 ACATGTGAATGAAGGTTGAGTGA 58.282 39.130 0.00 0.00 0.00 3.41
5859 6230 4.758674 ACATGTGAATGAAGGTTGAGTGAG 59.241 41.667 0.00 0.00 0.00 3.51
5860 6231 4.687901 TGTGAATGAAGGTTGAGTGAGA 57.312 40.909 0.00 0.00 0.00 3.27
5861 6232 5.034852 TGTGAATGAAGGTTGAGTGAGAA 57.965 39.130 0.00 0.00 0.00 2.87
5862 6233 5.624159 TGTGAATGAAGGTTGAGTGAGAAT 58.376 37.500 0.00 0.00 0.00 2.40
5863 6234 5.471116 TGTGAATGAAGGTTGAGTGAGAATG 59.529 40.000 0.00 0.00 0.00 2.67
5864 6235 5.702670 GTGAATGAAGGTTGAGTGAGAATGA 59.297 40.000 0.00 0.00 0.00 2.57
5865 6236 6.373774 GTGAATGAAGGTTGAGTGAGAATGAT 59.626 38.462 0.00 0.00 0.00 2.45
5866 6237 6.373495 TGAATGAAGGTTGAGTGAGAATGATG 59.627 38.462 0.00 0.00 0.00 3.07
5867 6238 4.582869 TGAAGGTTGAGTGAGAATGATGG 58.417 43.478 0.00 0.00 0.00 3.51
5868 6239 4.286808 TGAAGGTTGAGTGAGAATGATGGA 59.713 41.667 0.00 0.00 0.00 3.41
5869 6240 4.484537 AGGTTGAGTGAGAATGATGGAG 57.515 45.455 0.00 0.00 0.00 3.86
5870 6241 3.843027 AGGTTGAGTGAGAATGATGGAGT 59.157 43.478 0.00 0.00 0.00 3.85
5871 6242 5.026121 AGGTTGAGTGAGAATGATGGAGTA 58.974 41.667 0.00 0.00 0.00 2.59
5872 6243 5.664908 AGGTTGAGTGAGAATGATGGAGTAT 59.335 40.000 0.00 0.00 0.00 2.12
5873 6244 6.157645 AGGTTGAGTGAGAATGATGGAGTATT 59.842 38.462 0.00 0.00 0.00 1.89
5874 6245 6.825721 GGTTGAGTGAGAATGATGGAGTATTT 59.174 38.462 0.00 0.00 0.00 1.40
5875 6246 7.987458 GGTTGAGTGAGAATGATGGAGTATTTA 59.013 37.037 0.00 0.00 0.00 1.40
5876 6247 8.821894 GTTGAGTGAGAATGATGGAGTATTTAC 58.178 37.037 0.00 0.00 0.00 2.01
5877 6248 8.311395 TGAGTGAGAATGATGGAGTATTTACT 57.689 34.615 0.00 0.00 39.71 2.24
5878 6249 9.421399 TGAGTGAGAATGATGGAGTATTTACTA 57.579 33.333 0.00 0.00 36.50 1.82
5879 6250 9.906660 GAGTGAGAATGATGGAGTATTTACTAG 57.093 37.037 0.00 0.00 36.50 2.57
5880 6251 9.427821 AGTGAGAATGATGGAGTATTTACTAGT 57.572 33.333 0.00 0.00 36.50 2.57
5881 6252 9.685828 GTGAGAATGATGGAGTATTTACTAGTC 57.314 37.037 0.00 0.00 36.50 2.59
5882 6253 9.421399 TGAGAATGATGGAGTATTTACTAGTCA 57.579 33.333 0.00 0.00 36.50 3.41
5885 6256 9.988815 GAATGATGGAGTATTTACTAGTCATGT 57.011 33.333 0.00 0.00 36.50 3.21
5886 6257 9.988815 AATGATGGAGTATTTACTAGTCATGTC 57.011 33.333 0.00 0.00 36.50 3.06
5887 6258 8.533569 TGATGGAGTATTTACTAGTCATGTCA 57.466 34.615 0.00 0.00 36.50 3.58
5888 6259 9.147732 TGATGGAGTATTTACTAGTCATGTCAT 57.852 33.333 0.00 0.00 36.50 3.06
5889 6260 9.416794 GATGGAGTATTTACTAGTCATGTCATG 57.583 37.037 6.47 6.47 36.50 3.07
5890 6261 8.306313 TGGAGTATTTACTAGTCATGTCATGT 57.694 34.615 12.54 0.00 36.50 3.21
5891 6262 8.414003 TGGAGTATTTACTAGTCATGTCATGTC 58.586 37.037 12.54 7.30 36.50 3.06
5892 6263 8.414003 GGAGTATTTACTAGTCATGTCATGTCA 58.586 37.037 12.54 0.00 36.50 3.58
5893 6264 9.239002 GAGTATTTACTAGTCATGTCATGTCAC 57.761 37.037 12.54 4.78 36.50 3.67
5894 6265 8.749354 AGTATTTACTAGTCATGTCATGTCACA 58.251 33.333 12.54 0.00 34.13 3.58
5895 6266 9.534565 GTATTTACTAGTCATGTCATGTCACAT 57.465 33.333 12.54 0.00 37.49 3.21
5919 6290 9.512435 CATGAGTGAGTTAAAAATGATGAATCC 57.488 33.333 0.00 0.00 0.00 3.01
5920 6291 8.055279 TGAGTGAGTTAAAAATGATGAATCCC 57.945 34.615 0.00 0.00 0.00 3.85
5921 6292 7.122650 TGAGTGAGTTAAAAATGATGAATCCCC 59.877 37.037 0.00 0.00 0.00 4.81
5922 6293 7.184862 AGTGAGTTAAAAATGATGAATCCCCT 58.815 34.615 0.00 0.00 0.00 4.79
5923 6294 8.336235 AGTGAGTTAAAAATGATGAATCCCCTA 58.664 33.333 0.00 0.00 0.00 3.53
5924 6295 8.966868 GTGAGTTAAAAATGATGAATCCCCTAA 58.033 33.333 0.00 0.00 0.00 2.69
5925 6296 9.540538 TGAGTTAAAAATGATGAATCCCCTAAA 57.459 29.630 0.00 0.00 0.00 1.85
5971 6342 8.969260 AAAACTTATATAGGTCGTTTTAGGGG 57.031 34.615 0.00 0.00 36.40 4.79
5972 6343 6.106648 ACTTATATAGGTCGTTTTAGGGGC 57.893 41.667 0.00 0.00 0.00 5.80
5973 6344 5.603813 ACTTATATAGGTCGTTTTAGGGGCA 59.396 40.000 0.00 0.00 0.00 5.36
5974 6345 6.100134 ACTTATATAGGTCGTTTTAGGGGCAA 59.900 38.462 0.00 0.00 0.00 4.52
5975 6346 3.945640 ATAGGTCGTTTTAGGGGCAAT 57.054 42.857 0.00 0.00 0.00 3.56
5976 6347 1.834188 AGGTCGTTTTAGGGGCAATG 58.166 50.000 0.00 0.00 0.00 2.82
5977 6348 1.353022 AGGTCGTTTTAGGGGCAATGA 59.647 47.619 0.00 0.00 0.00 2.57
5978 6349 2.164338 GGTCGTTTTAGGGGCAATGAA 58.836 47.619 0.00 0.00 0.00 2.57
5979 6350 2.163613 GGTCGTTTTAGGGGCAATGAAG 59.836 50.000 0.00 0.00 0.00 3.02
5980 6351 3.078837 GTCGTTTTAGGGGCAATGAAGA 58.921 45.455 0.00 0.00 0.00 2.87
5981 6352 3.504520 GTCGTTTTAGGGGCAATGAAGAA 59.495 43.478 0.00 0.00 0.00 2.52
5982 6353 3.756434 TCGTTTTAGGGGCAATGAAGAAG 59.244 43.478 0.00 0.00 0.00 2.85
5983 6354 3.506067 CGTTTTAGGGGCAATGAAGAAGT 59.494 43.478 0.00 0.00 0.00 3.01
5984 6355 4.022329 CGTTTTAGGGGCAATGAAGAAGTT 60.022 41.667 0.00 0.00 0.00 2.66
5985 6356 5.508994 CGTTTTAGGGGCAATGAAGAAGTTT 60.509 40.000 0.00 0.00 0.00 2.66
5986 6357 6.294286 CGTTTTAGGGGCAATGAAGAAGTTTA 60.294 38.462 0.00 0.00 0.00 2.01
5987 6358 6.834168 TTTAGGGGCAATGAAGAAGTTTAG 57.166 37.500 0.00 0.00 0.00 1.85
5988 6359 3.701664 AGGGGCAATGAAGAAGTTTAGG 58.298 45.455 0.00 0.00 0.00 2.69
5989 6360 3.076032 AGGGGCAATGAAGAAGTTTAGGT 59.924 43.478 0.00 0.00 0.00 3.08
5990 6361 3.193479 GGGGCAATGAAGAAGTTTAGGTG 59.807 47.826 0.00 0.00 0.00 4.00
5991 6362 4.079253 GGGCAATGAAGAAGTTTAGGTGA 58.921 43.478 0.00 0.00 0.00 4.02
5992 6363 4.156739 GGGCAATGAAGAAGTTTAGGTGAG 59.843 45.833 0.00 0.00 0.00 3.51
5993 6364 4.379918 GGCAATGAAGAAGTTTAGGTGAGC 60.380 45.833 0.00 0.00 0.00 4.26
5994 6365 4.670221 GCAATGAAGAAGTTTAGGTGAGCG 60.670 45.833 0.00 0.00 0.00 5.03
5995 6366 3.746045 TGAAGAAGTTTAGGTGAGCGT 57.254 42.857 0.00 0.00 0.00 5.07
5996 6367 3.390135 TGAAGAAGTTTAGGTGAGCGTG 58.610 45.455 0.00 0.00 0.00 5.34
5997 6368 3.181469 TGAAGAAGTTTAGGTGAGCGTGT 60.181 43.478 0.00 0.00 0.00 4.49
5998 6369 2.755650 AGAAGTTTAGGTGAGCGTGTG 58.244 47.619 0.00 0.00 0.00 3.82
5999 6370 2.102588 AGAAGTTTAGGTGAGCGTGTGT 59.897 45.455 0.00 0.00 0.00 3.72
6000 6371 2.150397 AGTTTAGGTGAGCGTGTGTC 57.850 50.000 0.00 0.00 0.00 3.67
6001 6372 1.411246 AGTTTAGGTGAGCGTGTGTCA 59.589 47.619 0.00 0.00 0.00 3.58
6002 6373 1.525619 GTTTAGGTGAGCGTGTGTCAC 59.474 52.381 0.00 0.00 43.12 3.67
6003 6374 1.037493 TTAGGTGAGCGTGTGTCACT 58.963 50.000 4.27 0.00 43.34 3.41
6004 6375 1.900245 TAGGTGAGCGTGTGTCACTA 58.100 50.000 4.27 0.00 43.34 2.74
6005 6376 1.257743 AGGTGAGCGTGTGTCACTAT 58.742 50.000 4.27 0.00 43.34 2.12
6006 6377 1.618837 AGGTGAGCGTGTGTCACTATT 59.381 47.619 4.27 0.00 43.34 1.73
6007 6378 2.823747 AGGTGAGCGTGTGTCACTATTA 59.176 45.455 4.27 0.00 43.34 0.98
6008 6379 3.447586 AGGTGAGCGTGTGTCACTATTAT 59.552 43.478 4.27 0.00 43.34 1.28
6009 6380 3.551890 GGTGAGCGTGTGTCACTATTATG 59.448 47.826 4.27 0.00 43.34 1.90
6010 6381 4.421058 GTGAGCGTGTGTCACTATTATGA 58.579 43.478 4.27 0.00 41.05 2.15
6011 6382 5.043903 GTGAGCGTGTGTCACTATTATGAT 58.956 41.667 4.27 0.00 41.05 2.45
6012 6383 5.520288 GTGAGCGTGTGTCACTATTATGATT 59.480 40.000 4.27 0.00 41.05 2.57
6013 6384 6.036083 GTGAGCGTGTGTCACTATTATGATTT 59.964 38.462 4.27 0.00 41.05 2.17
6014 6385 6.255670 TGAGCGTGTGTCACTATTATGATTTC 59.744 38.462 4.27 0.00 31.34 2.17
6015 6386 6.341316 AGCGTGTGTCACTATTATGATTTCT 58.659 36.000 4.27 0.00 31.34 2.52
6016 6387 6.818644 AGCGTGTGTCACTATTATGATTTCTT 59.181 34.615 4.27 0.00 31.34 2.52
6017 6388 7.334421 AGCGTGTGTCACTATTATGATTTCTTT 59.666 33.333 4.27 0.00 31.34 2.52
6018 6389 7.962918 GCGTGTGTCACTATTATGATTTCTTTT 59.037 33.333 4.27 0.00 31.34 2.27
6019 6390 9.825972 CGTGTGTCACTATTATGATTTCTTTTT 57.174 29.630 4.27 0.00 31.34 1.94
6033 6404 7.620215 TGATTTCTTTTTGTTGAGAAAATGCG 58.380 30.769 3.05 0.00 42.99 4.73
6034 6405 6.959671 TTTCTTTTTGTTGAGAAAATGCGT 57.040 29.167 0.00 0.00 38.53 5.24
6035 6406 5.947503 TCTTTTTGTTGAGAAAATGCGTG 57.052 34.783 0.00 0.00 0.00 5.34
6036 6407 5.406649 TCTTTTTGTTGAGAAAATGCGTGT 58.593 33.333 0.00 0.00 0.00 4.49
6037 6408 5.514914 TCTTTTTGTTGAGAAAATGCGTGTC 59.485 36.000 0.00 0.00 0.00 3.67
6038 6409 4.362932 TTTGTTGAGAAAATGCGTGTCA 57.637 36.364 0.00 0.00 0.00 3.58
6039 6410 3.332761 TGTTGAGAAAATGCGTGTCAC 57.667 42.857 0.00 0.00 0.00 3.67
6040 6411 2.942376 TGTTGAGAAAATGCGTGTCACT 59.058 40.909 0.65 0.00 0.00 3.41
6041 6412 3.242706 TGTTGAGAAAATGCGTGTCACTG 60.243 43.478 0.65 0.00 0.00 3.66
6042 6413 2.560504 TGAGAAAATGCGTGTCACTGT 58.439 42.857 0.65 0.00 0.00 3.55
6043 6414 2.543848 TGAGAAAATGCGTGTCACTGTC 59.456 45.455 0.65 0.00 0.00 3.51
6044 6415 2.543848 GAGAAAATGCGTGTCACTGTCA 59.456 45.455 0.65 0.00 0.00 3.58
6045 6416 2.942376 AGAAAATGCGTGTCACTGTCAA 59.058 40.909 0.65 0.00 0.00 3.18
6046 6417 3.565482 AGAAAATGCGTGTCACTGTCAAT 59.435 39.130 0.65 0.00 0.00 2.57
6047 6418 3.988379 AAATGCGTGTCACTGTCAATT 57.012 38.095 0.65 0.00 0.00 2.32
6048 6419 3.988379 AATGCGTGTCACTGTCAATTT 57.012 38.095 0.65 0.00 0.00 1.82
6049 6420 3.988379 ATGCGTGTCACTGTCAATTTT 57.012 38.095 0.65 0.00 0.00 1.82
6050 6421 3.773860 TGCGTGTCACTGTCAATTTTT 57.226 38.095 0.65 0.00 0.00 1.94
6075 6446 5.621197 TTTGAGAAAATGTGTATCACCGG 57.379 39.130 0.00 0.00 32.73 5.28
6076 6447 3.006940 TGAGAAAATGTGTATCACCGGC 58.993 45.455 0.00 0.00 32.73 6.13
6077 6448 3.006940 GAGAAAATGTGTATCACCGGCA 58.993 45.455 0.00 0.00 32.73 5.69
6078 6449 3.620488 AGAAAATGTGTATCACCGGCAT 58.380 40.909 0.00 0.00 32.73 4.40
6079 6450 3.378112 AGAAAATGTGTATCACCGGCATG 59.622 43.478 0.00 0.00 32.73 4.06
6080 6451 2.418368 AATGTGTATCACCGGCATGT 57.582 45.000 0.00 0.00 32.73 3.21
6081 6452 1.667236 ATGTGTATCACCGGCATGTG 58.333 50.000 0.00 0.00 37.59 3.21
6082 6453 0.392327 TGTGTATCACCGGCATGTGG 60.392 55.000 0.00 4.76 36.87 4.17
6083 6454 1.095228 GTGTATCACCGGCATGTGGG 61.095 60.000 0.00 6.82 36.87 4.61
6084 6455 1.268283 TGTATCACCGGCATGTGGGA 61.268 55.000 0.00 5.72 36.87 4.37
6085 6456 0.814010 GTATCACCGGCATGTGGGAC 60.814 60.000 0.00 1.09 36.87 4.46
6086 6457 1.978455 TATCACCGGCATGTGGGACC 61.978 60.000 0.00 0.00 36.87 4.46
6087 6458 4.343323 CACCGGCATGTGGGACCA 62.343 66.667 0.00 0.00 32.50 4.02
6088 6459 3.338250 ACCGGCATGTGGGACCAT 61.338 61.111 0.00 0.00 0.00 3.55
6089 6460 2.516930 CCGGCATGTGGGACCATC 60.517 66.667 0.00 0.00 0.00 3.51
6090 6461 2.516930 CGGCATGTGGGACCATCC 60.517 66.667 0.00 0.00 35.23 3.51
6091 6462 3.010144 GGCATGTGGGACCATCCT 58.990 61.111 0.00 0.00 36.57 3.24
6092 6463 1.307647 GGCATGTGGGACCATCCTT 59.692 57.895 0.00 0.00 36.57 3.36
6093 6464 1.039233 GGCATGTGGGACCATCCTTG 61.039 60.000 0.00 0.00 36.57 3.61
6094 6465 0.323725 GCATGTGGGACCATCCTTGT 60.324 55.000 0.00 0.00 36.57 3.16
6095 6466 1.466856 CATGTGGGACCATCCTTGTG 58.533 55.000 0.00 0.00 36.57 3.33
6096 6467 1.004628 CATGTGGGACCATCCTTGTGA 59.995 52.381 0.00 0.00 36.57 3.58
6097 6468 1.371467 TGTGGGACCATCCTTGTGAT 58.629 50.000 0.00 0.00 36.57 3.06
6098 6469 1.281867 TGTGGGACCATCCTTGTGATC 59.718 52.381 0.00 0.00 36.57 2.92
6099 6470 1.561542 GTGGGACCATCCTTGTGATCT 59.438 52.381 0.00 0.00 36.57 2.75
6100 6471 1.839994 TGGGACCATCCTTGTGATCTC 59.160 52.381 0.00 0.00 36.57 2.75
6101 6472 1.141858 GGGACCATCCTTGTGATCTCC 59.858 57.143 0.00 0.00 36.57 3.71
6102 6473 2.122768 GGACCATCCTTGTGATCTCCT 58.877 52.381 0.00 0.00 32.53 3.69
6103 6474 2.103941 GGACCATCCTTGTGATCTCCTC 59.896 54.545 0.00 0.00 32.53 3.71
6104 6475 1.759445 ACCATCCTTGTGATCTCCTCG 59.241 52.381 0.00 0.00 0.00 4.63
6105 6476 1.069823 CCATCCTTGTGATCTCCTCGG 59.930 57.143 0.00 0.00 0.00 4.63
6106 6477 1.759445 CATCCTTGTGATCTCCTCGGT 59.241 52.381 0.00 0.00 0.00 4.69
6107 6478 1.186200 TCCTTGTGATCTCCTCGGTG 58.814 55.000 0.00 0.00 0.00 4.94
6108 6479 1.186200 CCTTGTGATCTCCTCGGTGA 58.814 55.000 0.00 0.00 0.00 4.02
6109 6480 1.550524 CCTTGTGATCTCCTCGGTGAA 59.449 52.381 0.00 0.00 0.00 3.18
6110 6481 2.028112 CCTTGTGATCTCCTCGGTGAAA 60.028 50.000 0.00 0.00 0.00 2.69
6111 6482 3.369892 CCTTGTGATCTCCTCGGTGAAAT 60.370 47.826 0.00 0.00 0.00 2.17
6112 6483 3.251479 TGTGATCTCCTCGGTGAAATG 57.749 47.619 0.00 0.00 0.00 2.32
6113 6484 2.093500 TGTGATCTCCTCGGTGAAATGG 60.093 50.000 0.00 0.00 0.00 3.16
6114 6485 1.486310 TGATCTCCTCGGTGAAATGGG 59.514 52.381 0.00 0.00 0.00 4.00
6115 6486 0.839946 ATCTCCTCGGTGAAATGGGG 59.160 55.000 0.00 0.00 0.00 4.96
6116 6487 1.452108 CTCCTCGGTGAAATGGGGC 60.452 63.158 0.00 0.00 0.00 5.80
6117 6488 1.915078 CTCCTCGGTGAAATGGGGCT 61.915 60.000 0.00 0.00 0.00 5.19
6118 6489 1.000896 CCTCGGTGAAATGGGGCTT 60.001 57.895 0.00 0.00 0.00 4.35
6119 6490 0.611896 CCTCGGTGAAATGGGGCTTT 60.612 55.000 0.00 0.00 0.00 3.51
6120 6491 0.527565 CTCGGTGAAATGGGGCTTTG 59.472 55.000 0.00 0.00 0.00 2.77
6121 6492 1.079888 CGGTGAAATGGGGCTTTGC 60.080 57.895 0.00 0.00 0.00 3.68
6122 6493 1.535204 CGGTGAAATGGGGCTTTGCT 61.535 55.000 0.00 0.00 0.00 3.91
6123 6494 0.686789 GGTGAAATGGGGCTTTGCTT 59.313 50.000 0.00 0.00 0.00 3.91
6124 6495 1.338105 GGTGAAATGGGGCTTTGCTTC 60.338 52.381 0.00 0.00 0.00 3.86
6125 6496 1.344114 GTGAAATGGGGCTTTGCTTCA 59.656 47.619 0.00 0.00 0.00 3.02
6126 6497 1.344114 TGAAATGGGGCTTTGCTTCAC 59.656 47.619 0.00 0.00 0.00 3.18
6127 6498 1.344114 GAAATGGGGCTTTGCTTCACA 59.656 47.619 0.00 0.00 0.00 3.58
6128 6499 0.971386 AATGGGGCTTTGCTTCACAG 59.029 50.000 0.00 0.00 0.00 3.66
6129 6500 0.901580 ATGGGGCTTTGCTTCACAGG 60.902 55.000 0.00 0.00 0.00 4.00
6130 6501 2.278330 GGGGCTTTGCTTCACAGGG 61.278 63.158 0.00 0.00 0.00 4.45
6131 6502 2.653115 GGCTTTGCTTCACAGGGC 59.347 61.111 0.00 0.00 0.00 5.19
6132 6503 1.905354 GGCTTTGCTTCACAGGGCT 60.905 57.895 0.00 0.00 0.00 5.19
6133 6504 1.288127 GCTTTGCTTCACAGGGCTG 59.712 57.895 0.00 0.00 0.00 4.85
6134 6505 1.174712 GCTTTGCTTCACAGGGCTGA 61.175 55.000 0.00 0.00 0.00 4.26
6135 6506 1.542492 CTTTGCTTCACAGGGCTGAT 58.458 50.000 0.00 0.00 0.00 2.90
6136 6507 1.471684 CTTTGCTTCACAGGGCTGATC 59.528 52.381 0.00 0.00 0.00 2.92
6137 6508 0.694771 TTGCTTCACAGGGCTGATCT 59.305 50.000 0.00 0.00 0.00 2.75
6138 6509 0.035725 TGCTTCACAGGGCTGATCTG 60.036 55.000 0.00 0.00 38.16 2.90
6139 6510 1.375098 GCTTCACAGGGCTGATCTGC 61.375 60.000 15.69 15.69 35.78 4.26
6140 6511 0.035725 CTTCACAGGGCTGATCTGCA 60.036 55.000 23.84 1.70 35.78 4.41
6142 6513 1.451567 CACAGGGCTGATCTGCAGG 60.452 63.158 23.84 15.03 45.03 4.85
6143 6514 1.614525 ACAGGGCTGATCTGCAGGA 60.615 57.895 23.84 0.57 45.03 3.86
6144 6515 0.987081 ACAGGGCTGATCTGCAGGAT 60.987 55.000 23.84 6.11 45.03 3.24
6145 6516 0.535328 CAGGGCTGATCTGCAGGATG 60.535 60.000 23.84 13.11 45.03 3.51
6146 6517 1.228184 GGGCTGATCTGCAGGATGG 60.228 63.158 23.84 3.69 45.03 3.51
6147 6518 1.228184 GGCTGATCTGCAGGATGGG 60.228 63.158 23.84 2.23 45.03 4.00
6148 6519 1.897615 GCTGATCTGCAGGATGGGC 60.898 63.158 18.67 8.68 45.03 5.36
6149 6520 1.837789 CTGATCTGCAGGATGGGCT 59.162 57.895 15.13 0.00 41.07 5.19
6150 6521 0.535328 CTGATCTGCAGGATGGGCTG 60.535 60.000 15.13 0.00 41.07 4.85
6151 6522 1.897615 GATCTGCAGGATGGGCTGC 60.898 63.158 15.13 0.00 45.89 5.25
6173 6544 2.926778 CCCATAGAGGCTTGAAGAGG 57.073 55.000 0.00 0.00 35.39 3.69
6174 6545 2.402564 CCCATAGAGGCTTGAAGAGGA 58.597 52.381 0.00 0.00 35.39 3.71
6175 6546 2.368221 CCCATAGAGGCTTGAAGAGGAG 59.632 54.545 0.00 0.00 35.39 3.69
6176 6547 3.303938 CCATAGAGGCTTGAAGAGGAGA 58.696 50.000 0.00 0.00 0.00 3.71
6177 6548 3.903090 CCATAGAGGCTTGAAGAGGAGAT 59.097 47.826 0.00 0.00 0.00 2.75
6178 6549 4.262549 CCATAGAGGCTTGAAGAGGAGATG 60.263 50.000 0.00 0.00 0.00 2.90
6179 6550 2.117865 AGAGGCTTGAAGAGGAGATGG 58.882 52.381 0.00 0.00 0.00 3.51
6180 6551 1.140652 GAGGCTTGAAGAGGAGATGGG 59.859 57.143 0.00 0.00 0.00 4.00
6181 6552 0.465278 GGCTTGAAGAGGAGATGGGC 60.465 60.000 0.00 0.00 0.00 5.36
6182 6553 0.545646 GCTTGAAGAGGAGATGGGCT 59.454 55.000 0.00 0.00 0.00 5.19
6183 6554 1.746516 GCTTGAAGAGGAGATGGGCTG 60.747 57.143 0.00 0.00 0.00 4.85
6184 6555 0.914644 TTGAAGAGGAGATGGGCTGG 59.085 55.000 0.00 0.00 0.00 4.85
6185 6556 0.043183 TGAAGAGGAGATGGGCTGGA 59.957 55.000 0.00 0.00 0.00 3.86
6186 6557 0.467804 GAAGAGGAGATGGGCTGGAC 59.532 60.000 0.00 0.00 0.00 4.02
6187 6558 1.333636 AAGAGGAGATGGGCTGGACG 61.334 60.000 0.00 0.00 0.00 4.79
6188 6559 1.758514 GAGGAGATGGGCTGGACGA 60.759 63.158 0.00 0.00 0.00 4.20
6189 6560 1.306141 AGGAGATGGGCTGGACGAA 60.306 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.366359 TGCTCTTATGCCTACAAGATATGATA 57.634 34.615 0.00 0.00 30.70 2.15
24 25 7.250032 TGCTCTTATGCCTACAAGATATGAT 57.750 36.000 0.00 0.00 30.70 2.45
25 26 6.670695 TGCTCTTATGCCTACAAGATATGA 57.329 37.500 0.00 0.00 30.70 2.15
26 27 7.734924 TTTGCTCTTATGCCTACAAGATATG 57.265 36.000 0.00 0.00 30.70 1.78
27 28 8.752005 TTTTTGCTCTTATGCCTACAAGATAT 57.248 30.769 0.00 0.00 30.70 1.63
28 29 7.283127 CCTTTTTGCTCTTATGCCTACAAGATA 59.717 37.037 0.00 0.00 30.70 1.98
100 103 2.159156 ACCGTGATGTTCTATTGCGCTA 60.159 45.455 9.73 0.00 0.00 4.26
104 107 5.345702 TGTACTACCGTGATGTTCTATTGC 58.654 41.667 0.00 0.00 0.00 3.56
105 108 5.459107 GCTGTACTACCGTGATGTTCTATTG 59.541 44.000 0.00 0.00 0.00 1.90
110 113 3.226346 TGCTGTACTACCGTGATGTTC 57.774 47.619 0.00 0.00 0.00 3.18
115 118 2.361119 GGATGATGCTGTACTACCGTGA 59.639 50.000 0.00 0.00 0.00 4.35
116 119 2.100749 TGGATGATGCTGTACTACCGTG 59.899 50.000 0.00 0.00 0.00 4.94
117 120 2.384828 TGGATGATGCTGTACTACCGT 58.615 47.619 0.00 0.00 0.00 4.83
118 121 3.452755 TTGGATGATGCTGTACTACCG 57.547 47.619 0.00 0.00 0.00 4.02
119 122 5.239525 GGAAATTGGATGATGCTGTACTACC 59.760 44.000 0.00 0.00 0.00 3.18
120 123 6.058183 AGGAAATTGGATGATGCTGTACTAC 58.942 40.000 0.00 0.00 0.00 2.73
181 186 6.365247 TCTCAAGTTTTAAGTCTATCGTGTGC 59.635 38.462 0.00 0.00 0.00 4.57
196 201 5.278022 GCGGTTTCAGAATCTCTCAAGTTTT 60.278 40.000 0.00 0.00 0.00 2.43
199 204 3.244215 TGCGGTTTCAGAATCTCTCAAGT 60.244 43.478 0.00 0.00 0.00 3.16
200 205 3.329386 TGCGGTTTCAGAATCTCTCAAG 58.671 45.455 0.00 0.00 0.00 3.02
215 221 1.608590 CTGGTCAACTTGAATGCGGTT 59.391 47.619 0.00 0.00 0.00 4.44
230 236 1.064946 CCAGACGATCGAGCTGGTC 59.935 63.158 33.48 18.70 43.25 4.02
329 343 2.378886 TCCTTAGGATCATCGGCCTCTA 59.621 50.000 0.00 0.00 35.73 2.43
340 365 6.459710 CGCCTTGGTTTATTTTCCTTAGGATC 60.460 42.308 0.12 0.00 32.23 3.36
341 366 5.359860 CGCCTTGGTTTATTTTCCTTAGGAT 59.640 40.000 0.12 0.00 32.23 3.24
343 368 4.142249 CCGCCTTGGTTTATTTTCCTTAGG 60.142 45.833 0.00 0.00 33.03 2.69
358 389 4.101448 CTCACCCTCCCGCCTTGG 62.101 72.222 0.00 0.00 37.55 3.61
377 408 2.511145 CAGCCCGCTCTTCTCAGC 60.511 66.667 0.00 0.00 35.90 4.26
378 409 1.153667 GTCAGCCCGCTCTTCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
379 410 2.650116 GGTCAGCCCGCTCTTCTCA 61.650 63.158 0.00 0.00 0.00 3.27
380 411 1.893919 AAGGTCAGCCCGCTCTTCTC 61.894 60.000 0.00 0.00 38.74 2.87
381 412 1.915769 AAGGTCAGCCCGCTCTTCT 60.916 57.895 0.00 0.00 38.74 2.85
382 413 1.743252 CAAGGTCAGCCCGCTCTTC 60.743 63.158 0.00 0.00 38.74 2.87
383 414 2.348998 CAAGGTCAGCCCGCTCTT 59.651 61.111 0.00 0.00 38.74 2.85
415 446 3.753434 AGCTGCGACCTCAGGACG 61.753 66.667 11.58 11.58 43.00 4.79
507 538 3.384014 CTCGTCTGTCGCGGGTCTC 62.384 68.421 6.13 0.00 39.67 3.36
636 668 3.546714 CTCCGGGCAGGTTCGGTTT 62.547 63.158 0.00 0.00 45.79 3.27
718 750 2.499827 CCGCACTAGCTACCCCTCC 61.500 68.421 0.00 0.00 39.10 4.30
720 752 2.444140 CCCGCACTAGCTACCCCT 60.444 66.667 0.00 0.00 39.10 4.79
721 753 2.443390 TCCCGCACTAGCTACCCC 60.443 66.667 0.00 0.00 39.10 4.95
722 754 2.499827 CCTCCCGCACTAGCTACCC 61.500 68.421 0.00 0.00 39.10 3.69
723 755 2.499827 CCCTCCCGCACTAGCTACC 61.500 68.421 0.00 0.00 39.10 3.18
724 756 3.130227 CCCTCCCGCACTAGCTAC 58.870 66.667 0.00 0.00 39.10 3.58
725 757 2.838225 GCCCTCCCGCACTAGCTA 60.838 66.667 0.00 0.00 39.10 3.32
914 997 1.300233 GCCGAAGTGGATAGGCTCG 60.300 63.158 0.00 0.00 45.67 5.03
918 1001 1.592669 CGCTGCCGAAGTGGATAGG 60.593 63.158 0.00 0.00 42.00 2.57
941 1025 2.821969 CACCACTGGGGAGAGATTTTTG 59.178 50.000 1.10 0.00 41.15 2.44
1149 1271 4.308458 TCCTTGGGCGTGGTCGTG 62.308 66.667 0.00 0.00 39.49 4.35
1467 1589 1.446966 GAGGCACTTGTCGAGGAGC 60.447 63.158 0.00 0.00 41.55 4.70
1749 1871 1.414919 GTGTTGTAGGTGGTGAGGTCA 59.585 52.381 0.00 0.00 0.00 4.02
2094 2216 2.357154 CCTCCCCTGTTTTCCATACTGG 60.357 54.545 0.00 0.00 39.43 4.00
2136 2258 2.066262 GCCGTTCTCATCTCACGAAAA 58.934 47.619 0.00 0.00 35.93 2.29
2139 2261 0.171231 CAGCCGTTCTCATCTCACGA 59.829 55.000 0.00 0.00 35.93 4.35
2169 2291 0.391927 GCACATTGTAGGTGGCCGTA 60.392 55.000 0.00 0.00 36.76 4.02
2358 2480 4.843728 CAGTAGGCACCATTCCTTCTTTA 58.156 43.478 0.00 0.00 35.21 1.85
2506 2796 5.511234 AGAGAGTGCCAATGAAATATTGC 57.489 39.130 0.00 0.00 0.00 3.56
2507 2797 6.755141 CCAAAGAGAGTGCCAATGAAATATTG 59.245 38.462 0.00 0.00 0.00 1.90
2520 2810 4.187694 CTCCTGAATACCAAAGAGAGTGC 58.812 47.826 0.00 0.00 30.62 4.40
2521 2811 4.764172 CCTCCTGAATACCAAAGAGAGTG 58.236 47.826 0.00 0.00 30.62 3.51
2599 2890 8.976715 CAAAAACATTTGCAAGAGAATTGTAC 57.023 30.769 0.00 0.00 0.00 2.90
2833 3124 0.249155 TAACGCCCGCTATGCAGTAC 60.249 55.000 0.00 0.00 0.00 2.73
2845 3136 3.386768 TTGCTCTCATCTATAACGCCC 57.613 47.619 0.00 0.00 0.00 6.13
2848 3139 5.284864 TGCTCTTTGCTCTCATCTATAACG 58.715 41.667 0.00 0.00 43.37 3.18
2979 3270 6.828785 ACAGAAGTTTGACAGATTGTAAAGGT 59.171 34.615 0.00 0.00 0.00 3.50
3006 3297 3.213206 ACAGTCAGCAATGTTCAGGAA 57.787 42.857 0.00 0.00 0.00 3.36
3105 3396 8.887717 GTCAGCTTTGTGATTTATCTAACTGAT 58.112 33.333 0.00 0.00 39.11 2.90
3202 3493 0.036294 GGCGGCTCTAACTGAAGGTT 60.036 55.000 0.00 0.00 41.54 3.50
3238 3529 8.401490 AGTTCAAACTCTGATTAGCAATCTTT 57.599 30.769 9.34 1.55 35.07 2.52
3253 3549 3.130340 TGTTCCCTTGCAAGTTCAAACTC 59.870 43.478 24.35 7.52 38.57 3.01
3264 3560 3.192422 CGTTTGGATTATGTTCCCTTGCA 59.808 43.478 0.00 0.00 34.67 4.08
3328 3625 7.381323 CCTAGTACAGAATGACATGCATATGA 58.619 38.462 6.97 0.00 39.69 2.15
3477 3775 7.078249 AGGGCATGATCACATAATAACTGTA 57.922 36.000 0.00 0.00 35.09 2.74
3540 3838 5.647658 CCAGATATAGCACACACAAGGAAAA 59.352 40.000 0.00 0.00 0.00 2.29
3559 3857 7.283127 ACGATTTAAGCATGACAAATACCAGAT 59.717 33.333 0.00 0.00 0.00 2.90
3570 3868 4.156008 AGACCCAAACGATTTAAGCATGAC 59.844 41.667 0.00 0.00 0.00 3.06
3648 3948 7.230849 TGCATCAAATCATTTTACTTCTGGT 57.769 32.000 0.00 0.00 0.00 4.00
3815 4117 0.893727 ATCGGCCCACCTGAAAACAC 60.894 55.000 0.00 0.00 0.00 3.32
3891 4193 4.895297 TCCCCTTTTATCATGGAAGCAATC 59.105 41.667 0.00 0.00 0.00 2.67
4161 4463 5.690865 ACTGGACCAGTAAATGAAAAGACA 58.309 37.500 26.08 0.00 43.46 3.41
4284 4586 7.102993 AGATCTTTCTCTCTTTTTAGTCTGGC 58.897 38.462 0.00 0.00 0.00 4.85
4344 4646 6.183360 GGAAAGGAACATCGATTTAGGTTGAG 60.183 42.308 0.00 0.00 0.00 3.02
4423 4726 5.159273 TCAAAATAAACCAATTCCCCAGC 57.841 39.130 0.00 0.00 0.00 4.85
4427 4730 7.222611 CACATCGATCAAAATAAACCAATTCCC 59.777 37.037 0.00 0.00 0.00 3.97
4477 4780 3.201290 CATGGGTACAGCAGCTTAAGAG 58.799 50.000 6.67 0.00 0.00 2.85
4492 4795 5.422145 GCATTCAATTAAGAAAGCATGGGT 58.578 37.500 0.00 0.00 40.74 4.51
4493 4796 4.505191 CGCATTCAATTAAGAAAGCATGGG 59.495 41.667 0.00 0.00 41.00 4.00
4535 4838 0.036952 GCACTGCACTGCTTCCTAGA 60.037 55.000 10.68 0.00 34.06 2.43
4716 5020 9.273016 GGATATCGAATGATTCCTCTTACAAAA 57.727 33.333 0.00 0.00 35.99 2.44
4757 5061 5.625921 TCTGTGAAAATTCAATCATGCGA 57.374 34.783 0.00 0.00 39.21 5.10
4819 5151 2.602257 AAAAACTGTCAGGCCAAAGC 57.398 45.000 5.01 0.00 38.76 3.51
4875 5207 2.437281 AGATCGGCAATCCTCTTGTGAT 59.563 45.455 0.00 0.00 34.67 3.06
4887 5219 2.948979 ACACAACTTTTGAGATCGGCAA 59.051 40.909 0.67 0.67 0.00 4.52
5139 5477 5.977489 TCTTCTTCTACCAACGATTCAGA 57.023 39.130 0.00 0.00 0.00 3.27
5171 5512 2.206515 CTCACAGCGCGAGGAGTTCT 62.207 60.000 12.10 0.00 0.00 3.01
5300 5645 1.403780 GGTATGGTCGTTCTTGTCGCT 60.404 52.381 0.00 0.00 0.00 4.93
5323 5669 0.823356 AAGGAAGCCGCTGCAAAAGA 60.823 50.000 2.05 0.00 41.13 2.52
5344 5690 0.837272 CCCACCGGGTATCACTGAAT 59.163 55.000 6.32 0.00 38.25 2.57
5385 5740 0.403271 AGCTGTTCTGGGCAAGATGT 59.597 50.000 0.00 0.00 33.93 3.06
5434 5789 4.225942 AGATGAACCTGAATTCCTGCACTA 59.774 41.667 2.27 0.00 0.00 2.74
5557 5912 3.559238 AAAGTAAGTTCATGCTTGCCG 57.441 42.857 0.00 0.00 32.62 5.69
5603 5958 1.666888 GCTGCCATGTGTTTACAGTGC 60.667 52.381 0.00 0.00 40.79 4.40
5613 5968 1.915614 GACGAGGTTGCTGCCATGTG 61.916 60.000 0.00 0.00 0.00 3.21
5625 5980 1.304547 CTCACCAGGAGGACGAGGT 60.305 63.158 0.00 0.00 40.13 3.85
5654 6009 2.698855 TCTACCTCTGCCAGAAATGC 57.301 50.000 0.00 0.00 0.00 3.56
5674 6029 4.101898 TGCAGTTCTACAAAACTCCTACCA 59.898 41.667 0.00 0.00 37.38 3.25
5676 6031 5.932303 TCATGCAGTTCTACAAAACTCCTAC 59.068 40.000 0.00 0.00 37.38 3.18
5686 6042 6.230472 ACAACAGTTATCATGCAGTTCTACA 58.770 36.000 0.00 0.00 0.00 2.74
5790 6161 2.237643 TGAGCTAGGTGCATTGCAAAA 58.762 42.857 13.94 0.79 45.94 2.44
5820 6191 6.801539 TCACATGTAATCCACAGAAAGAAC 57.198 37.500 0.00 0.00 41.51 3.01
5825 6196 6.375174 CCTTCATTCACATGTAATCCACAGAA 59.625 38.462 0.00 0.00 41.51 3.02
5838 6209 5.233083 TCTCACTCAACCTTCATTCACAT 57.767 39.130 0.00 0.00 0.00 3.21
5839 6210 4.687901 TCTCACTCAACCTTCATTCACA 57.312 40.909 0.00 0.00 0.00 3.58
5840 6211 5.702670 TCATTCTCACTCAACCTTCATTCAC 59.297 40.000 0.00 0.00 0.00 3.18
5841 6212 5.868454 TCATTCTCACTCAACCTTCATTCA 58.132 37.500 0.00 0.00 0.00 2.57
5842 6213 6.183360 CCATCATTCTCACTCAACCTTCATTC 60.183 42.308 0.00 0.00 0.00 2.67
5843 6214 5.651139 CCATCATTCTCACTCAACCTTCATT 59.349 40.000 0.00 0.00 0.00 2.57
5844 6215 5.045359 TCCATCATTCTCACTCAACCTTCAT 60.045 40.000 0.00 0.00 0.00 2.57
5845 6216 4.286808 TCCATCATTCTCACTCAACCTTCA 59.713 41.667 0.00 0.00 0.00 3.02
5846 6217 4.836825 TCCATCATTCTCACTCAACCTTC 58.163 43.478 0.00 0.00 0.00 3.46
5847 6218 4.288105 ACTCCATCATTCTCACTCAACCTT 59.712 41.667 0.00 0.00 0.00 3.50
5848 6219 3.843027 ACTCCATCATTCTCACTCAACCT 59.157 43.478 0.00 0.00 0.00 3.50
5849 6220 4.213564 ACTCCATCATTCTCACTCAACC 57.786 45.455 0.00 0.00 0.00 3.77
5850 6221 7.856145 AAATACTCCATCATTCTCACTCAAC 57.144 36.000 0.00 0.00 0.00 3.18
5851 6222 8.762645 AGTAAATACTCCATCATTCTCACTCAA 58.237 33.333 0.00 0.00 0.00 3.02
5852 6223 8.311395 AGTAAATACTCCATCATTCTCACTCA 57.689 34.615 0.00 0.00 0.00 3.41
5853 6224 9.906660 CTAGTAAATACTCCATCATTCTCACTC 57.093 37.037 0.00 0.00 37.73 3.51
5854 6225 9.427821 ACTAGTAAATACTCCATCATTCTCACT 57.572 33.333 0.00 0.00 37.73 3.41
5855 6226 9.685828 GACTAGTAAATACTCCATCATTCTCAC 57.314 37.037 0.00 0.00 37.73 3.51
5856 6227 9.421399 TGACTAGTAAATACTCCATCATTCTCA 57.579 33.333 0.00 0.00 37.73 3.27
5859 6230 9.988815 ACATGACTAGTAAATACTCCATCATTC 57.011 33.333 0.00 0.00 37.73 2.67
5860 6231 9.988815 GACATGACTAGTAAATACTCCATCATT 57.011 33.333 0.00 0.00 37.73 2.57
5861 6232 9.147732 TGACATGACTAGTAAATACTCCATCAT 57.852 33.333 0.00 3.09 37.73 2.45
5862 6233 8.533569 TGACATGACTAGTAAATACTCCATCA 57.466 34.615 0.00 0.97 37.73 3.07
5863 6234 9.416794 CATGACATGACTAGTAAATACTCCATC 57.583 37.037 10.03 0.00 37.73 3.51
5864 6235 8.928448 ACATGACATGACTAGTAAATACTCCAT 58.072 33.333 22.19 0.00 37.73 3.41
5865 6236 8.306313 ACATGACATGACTAGTAAATACTCCA 57.694 34.615 22.19 0.00 37.73 3.86
5866 6237 8.414003 TGACATGACATGACTAGTAAATACTCC 58.586 37.037 22.19 0.00 37.73 3.85
5867 6238 9.239002 GTGACATGACATGACTAGTAAATACTC 57.761 37.037 22.19 4.87 37.73 2.59
5868 6239 8.749354 TGTGACATGACATGACTAGTAAATACT 58.251 33.333 22.19 0.00 40.24 2.12
5869 6240 8.926715 TGTGACATGACATGACTAGTAAATAC 57.073 34.615 22.19 7.87 0.00 1.89
5891 6262 9.850628 ATTCATCATTTTTAACTCACTCATGTG 57.149 29.630 0.00 0.00 45.07 3.21
5893 6264 9.512435 GGATTCATCATTTTTAACTCACTCATG 57.488 33.333 0.00 0.00 0.00 3.07
5894 6265 8.689972 GGGATTCATCATTTTTAACTCACTCAT 58.310 33.333 0.00 0.00 0.00 2.90
5895 6266 7.122650 GGGGATTCATCATTTTTAACTCACTCA 59.877 37.037 0.00 0.00 0.00 3.41
5896 6267 7.340487 AGGGGATTCATCATTTTTAACTCACTC 59.660 37.037 0.00 0.00 0.00 3.51
5897 6268 7.184862 AGGGGATTCATCATTTTTAACTCACT 58.815 34.615 0.00 0.00 0.00 3.41
5898 6269 7.410120 AGGGGATTCATCATTTTTAACTCAC 57.590 36.000 0.00 0.00 0.00 3.51
5899 6270 9.540538 TTTAGGGGATTCATCATTTTTAACTCA 57.459 29.630 0.00 0.00 0.00 3.41
5945 6316 9.399797 CCCCTAAAACGACCTATATAAGTTTTT 57.600 33.333 16.23 9.50 42.59 1.94
5946 6317 7.500227 GCCCCTAAAACGACCTATATAAGTTTT 59.500 37.037 15.72 15.72 44.15 2.43
5947 6318 6.994496 GCCCCTAAAACGACCTATATAAGTTT 59.006 38.462 0.00 0.00 36.70 2.66
5948 6319 6.100134 TGCCCCTAAAACGACCTATATAAGTT 59.900 38.462 0.00 0.00 0.00 2.66
5949 6320 5.603813 TGCCCCTAAAACGACCTATATAAGT 59.396 40.000 0.00 0.00 0.00 2.24
5950 6321 6.105397 TGCCCCTAAAACGACCTATATAAG 57.895 41.667 0.00 0.00 0.00 1.73
5951 6322 6.497624 TTGCCCCTAAAACGACCTATATAA 57.502 37.500 0.00 0.00 0.00 0.98
5952 6323 6.270463 TCATTGCCCCTAAAACGACCTATATA 59.730 38.462 0.00 0.00 0.00 0.86
5953 6324 5.072600 TCATTGCCCCTAAAACGACCTATAT 59.927 40.000 0.00 0.00 0.00 0.86
5954 6325 4.409574 TCATTGCCCCTAAAACGACCTATA 59.590 41.667 0.00 0.00 0.00 1.31
5955 6326 3.201266 TCATTGCCCCTAAAACGACCTAT 59.799 43.478 0.00 0.00 0.00 2.57
5956 6327 2.572556 TCATTGCCCCTAAAACGACCTA 59.427 45.455 0.00 0.00 0.00 3.08
5957 6328 1.353022 TCATTGCCCCTAAAACGACCT 59.647 47.619 0.00 0.00 0.00 3.85
5958 6329 1.828979 TCATTGCCCCTAAAACGACC 58.171 50.000 0.00 0.00 0.00 4.79
5959 6330 3.078837 TCTTCATTGCCCCTAAAACGAC 58.921 45.455 0.00 0.00 0.00 4.34
5960 6331 3.426787 TCTTCATTGCCCCTAAAACGA 57.573 42.857 0.00 0.00 0.00 3.85
5961 6332 3.506067 ACTTCTTCATTGCCCCTAAAACG 59.494 43.478 0.00 0.00 0.00 3.60
5962 6333 5.468540 AACTTCTTCATTGCCCCTAAAAC 57.531 39.130 0.00 0.00 0.00 2.43
5963 6334 6.210584 CCTAAACTTCTTCATTGCCCCTAAAA 59.789 38.462 0.00 0.00 0.00 1.52
5964 6335 5.714806 CCTAAACTTCTTCATTGCCCCTAAA 59.285 40.000 0.00 0.00 0.00 1.85
5965 6336 5.222254 ACCTAAACTTCTTCATTGCCCCTAA 60.222 40.000 0.00 0.00 0.00 2.69
5966 6337 4.291249 ACCTAAACTTCTTCATTGCCCCTA 59.709 41.667 0.00 0.00 0.00 3.53
5967 6338 3.076032 ACCTAAACTTCTTCATTGCCCCT 59.924 43.478 0.00 0.00 0.00 4.79
5968 6339 3.193479 CACCTAAACTTCTTCATTGCCCC 59.807 47.826 0.00 0.00 0.00 5.80
5969 6340 4.079253 TCACCTAAACTTCTTCATTGCCC 58.921 43.478 0.00 0.00 0.00 5.36
5970 6341 4.379918 GCTCACCTAAACTTCTTCATTGCC 60.380 45.833 0.00 0.00 0.00 4.52
5971 6342 4.670221 CGCTCACCTAAACTTCTTCATTGC 60.670 45.833 0.00 0.00 0.00 3.56
5972 6343 4.452455 ACGCTCACCTAAACTTCTTCATTG 59.548 41.667 0.00 0.00 0.00 2.82
5973 6344 4.452455 CACGCTCACCTAAACTTCTTCATT 59.548 41.667 0.00 0.00 0.00 2.57
5974 6345 3.997021 CACGCTCACCTAAACTTCTTCAT 59.003 43.478 0.00 0.00 0.00 2.57
5975 6346 3.181469 ACACGCTCACCTAAACTTCTTCA 60.181 43.478 0.00 0.00 0.00 3.02
5976 6347 3.184581 CACACGCTCACCTAAACTTCTTC 59.815 47.826 0.00 0.00 0.00 2.87
5977 6348 3.131396 CACACGCTCACCTAAACTTCTT 58.869 45.455 0.00 0.00 0.00 2.52
5978 6349 2.102588 ACACACGCTCACCTAAACTTCT 59.897 45.455 0.00 0.00 0.00 2.85
5979 6350 2.475487 GACACACGCTCACCTAAACTTC 59.525 50.000 0.00 0.00 0.00 3.01
5980 6351 2.159014 TGACACACGCTCACCTAAACTT 60.159 45.455 0.00 0.00 0.00 2.66
5981 6352 1.411246 TGACACACGCTCACCTAAACT 59.589 47.619 0.00 0.00 0.00 2.66
5982 6353 1.525619 GTGACACACGCTCACCTAAAC 59.474 52.381 0.00 0.00 33.23 2.01
5983 6354 1.411246 AGTGACACACGCTCACCTAAA 59.589 47.619 8.59 0.00 39.15 1.85
5984 6355 1.037493 AGTGACACACGCTCACCTAA 58.963 50.000 8.59 0.00 39.15 2.69
5985 6356 1.900245 TAGTGACACACGCTCACCTA 58.100 50.000 8.59 0.00 39.15 3.08
5986 6357 1.257743 ATAGTGACACACGCTCACCT 58.742 50.000 8.59 0.00 39.15 4.00
5987 6358 2.080286 AATAGTGACACACGCTCACC 57.920 50.000 8.59 0.00 39.15 4.02
5988 6359 4.421058 TCATAATAGTGACACACGCTCAC 58.579 43.478 8.59 0.00 39.64 3.51
5989 6360 4.712122 TCATAATAGTGACACACGCTCA 57.288 40.909 8.59 0.00 39.64 4.26
5990 6361 6.477033 AGAAATCATAATAGTGACACACGCTC 59.523 38.462 8.59 0.00 39.64 5.03
5991 6362 6.341316 AGAAATCATAATAGTGACACACGCT 58.659 36.000 8.59 0.00 39.64 5.07
5992 6363 6.589830 AGAAATCATAATAGTGACACACGC 57.410 37.500 8.59 0.00 39.64 5.34
5993 6364 9.825972 AAAAAGAAATCATAATAGTGACACACG 57.174 29.630 8.59 0.00 39.64 4.49
6007 6378 8.277713 CGCATTTTCTCAACAAAAAGAAATCAT 58.722 29.630 0.00 0.00 40.25 2.45
6008 6379 7.277539 ACGCATTTTCTCAACAAAAAGAAATCA 59.722 29.630 0.00 0.00 40.25 2.57
6009 6380 7.580165 CACGCATTTTCTCAACAAAAAGAAATC 59.420 33.333 0.00 0.00 40.25 2.17
6010 6381 7.064490 ACACGCATTTTCTCAACAAAAAGAAAT 59.936 29.630 0.00 0.00 40.25 2.17
6011 6382 6.367422 ACACGCATTTTCTCAACAAAAAGAAA 59.633 30.769 0.00 0.00 39.18 2.52
6012 6383 5.866633 ACACGCATTTTCTCAACAAAAAGAA 59.133 32.000 0.00 0.00 0.00 2.52
6013 6384 5.406649 ACACGCATTTTCTCAACAAAAAGA 58.593 33.333 0.00 0.00 0.00 2.52
6014 6385 5.288232 TGACACGCATTTTCTCAACAAAAAG 59.712 36.000 0.00 0.00 0.00 2.27
6015 6386 5.061560 GTGACACGCATTTTCTCAACAAAAA 59.938 36.000 0.00 0.00 0.00 1.94
6016 6387 4.560819 GTGACACGCATTTTCTCAACAAAA 59.439 37.500 0.00 0.00 0.00 2.44
6017 6388 4.101942 GTGACACGCATTTTCTCAACAAA 58.898 39.130 0.00 0.00 0.00 2.83
6018 6389 3.376859 AGTGACACGCATTTTCTCAACAA 59.623 39.130 0.00 0.00 0.00 2.83
6019 6390 2.942376 AGTGACACGCATTTTCTCAACA 59.058 40.909 0.00 0.00 0.00 3.33
6020 6391 3.242739 ACAGTGACACGCATTTTCTCAAC 60.243 43.478 0.00 0.00 0.00 3.18
6021 6392 2.942376 ACAGTGACACGCATTTTCTCAA 59.058 40.909 0.00 0.00 0.00 3.02
6022 6393 2.543848 GACAGTGACACGCATTTTCTCA 59.456 45.455 0.00 0.00 0.00 3.27
6023 6394 2.543848 TGACAGTGACACGCATTTTCTC 59.456 45.455 0.00 0.00 0.00 2.87
6024 6395 2.560504 TGACAGTGACACGCATTTTCT 58.439 42.857 0.00 0.00 0.00 2.52
6025 6396 3.332761 TTGACAGTGACACGCATTTTC 57.667 42.857 0.00 0.00 0.00 2.29
6026 6397 3.988379 ATTGACAGTGACACGCATTTT 57.012 38.095 0.00 0.00 0.00 1.82
6027 6398 3.988379 AATTGACAGTGACACGCATTT 57.012 38.095 0.00 1.16 0.00 2.32
6028 6399 3.988379 AAATTGACAGTGACACGCATT 57.012 38.095 0.00 0.00 0.00 3.56
6029 6400 3.988379 AAAATTGACAGTGACACGCAT 57.012 38.095 0.00 0.00 0.00 4.73
6030 6401 3.773860 AAAAATTGACAGTGACACGCA 57.226 38.095 0.00 0.00 0.00 5.24
6051 6422 6.442952 CCGGTGATACACATTTTCTCAAAAA 58.557 36.000 0.00 0.00 38.66 1.94
6052 6423 5.563867 GCCGGTGATACACATTTTCTCAAAA 60.564 40.000 1.90 0.00 35.86 2.44
6053 6424 4.083003 GCCGGTGATACACATTTTCTCAAA 60.083 41.667 1.90 0.00 35.86 2.69
6054 6425 3.438781 GCCGGTGATACACATTTTCTCAA 59.561 43.478 1.90 0.00 35.86 3.02
6055 6426 3.006940 GCCGGTGATACACATTTTCTCA 58.993 45.455 1.90 0.00 35.86 3.27
6056 6427 3.006940 TGCCGGTGATACACATTTTCTC 58.993 45.455 1.90 0.00 35.86 2.87
6057 6428 3.066291 TGCCGGTGATACACATTTTCT 57.934 42.857 1.90 0.00 35.86 2.52
6058 6429 3.128589 ACATGCCGGTGATACACATTTTC 59.871 43.478 1.90 0.00 35.86 2.29
6059 6430 3.088532 ACATGCCGGTGATACACATTTT 58.911 40.909 1.90 0.00 35.86 1.82
6060 6431 2.423185 CACATGCCGGTGATACACATTT 59.577 45.455 1.90 0.00 41.32 2.32
6061 6432 2.016318 CACATGCCGGTGATACACATT 58.984 47.619 1.90 0.00 41.32 2.71
6062 6433 1.667236 CACATGCCGGTGATACACAT 58.333 50.000 1.90 0.00 41.32 3.21
6063 6434 0.392327 CCACATGCCGGTGATACACA 60.392 55.000 1.90 0.00 41.32 3.72
6064 6435 1.095228 CCCACATGCCGGTGATACAC 61.095 60.000 1.90 0.00 41.32 2.90
6065 6436 1.223211 CCCACATGCCGGTGATACA 59.777 57.895 1.90 0.00 41.32 2.29
6066 6437 0.814010 GTCCCACATGCCGGTGATAC 60.814 60.000 1.90 1.34 41.32 2.24
6067 6438 1.524961 GTCCCACATGCCGGTGATA 59.475 57.895 1.90 0.00 41.32 2.15
6068 6439 2.272146 GTCCCACATGCCGGTGAT 59.728 61.111 1.90 0.00 41.32 3.06
6069 6440 4.028490 GGTCCCACATGCCGGTGA 62.028 66.667 1.90 0.00 41.32 4.02
6070 6441 3.643595 ATGGTCCCACATGCCGGTG 62.644 63.158 1.90 0.00 38.52 4.94
6071 6442 3.338250 ATGGTCCCACATGCCGGT 61.338 61.111 1.90 0.00 0.00 5.28
6072 6443 2.516930 GATGGTCCCACATGCCGG 60.517 66.667 0.00 0.00 0.00 6.13
6073 6444 2.516930 GGATGGTCCCACATGCCG 60.517 66.667 0.00 0.00 33.64 5.69
6074 6445 1.039233 CAAGGATGGTCCCACATGCC 61.039 60.000 0.00 0.00 39.68 4.40
6075 6446 0.323725 ACAAGGATGGTCCCACATGC 60.324 55.000 0.00 0.00 37.19 4.06
6076 6447 1.004628 TCACAAGGATGGTCCCACATG 59.995 52.381 0.00 0.00 37.19 3.21
6077 6448 1.371467 TCACAAGGATGGTCCCACAT 58.629 50.000 0.00 0.00 37.19 3.21
6078 6449 1.281867 GATCACAAGGATGGTCCCACA 59.718 52.381 0.00 0.00 37.19 4.17
6079 6450 1.561542 AGATCACAAGGATGGTCCCAC 59.438 52.381 0.00 0.00 37.19 4.61
6080 6451 1.839994 GAGATCACAAGGATGGTCCCA 59.160 52.381 0.00 0.00 37.19 4.37
6081 6452 1.141858 GGAGATCACAAGGATGGTCCC 59.858 57.143 0.00 0.00 37.19 4.46
6082 6453 2.103941 GAGGAGATCACAAGGATGGTCC 59.896 54.545 0.00 0.00 36.00 4.46
6083 6454 2.223923 CGAGGAGATCACAAGGATGGTC 60.224 54.545 0.00 0.00 36.00 4.02
6084 6455 1.759445 CGAGGAGATCACAAGGATGGT 59.241 52.381 0.00 0.00 36.00 3.55
6085 6456 1.069823 CCGAGGAGATCACAAGGATGG 59.930 57.143 0.00 0.00 36.00 3.51
6086 6457 1.759445 ACCGAGGAGATCACAAGGATG 59.241 52.381 0.00 0.00 36.00 3.51
6087 6458 1.759445 CACCGAGGAGATCACAAGGAT 59.241 52.381 0.00 0.00 39.53 3.24
6088 6459 1.186200 CACCGAGGAGATCACAAGGA 58.814 55.000 0.00 0.00 0.00 3.36
6089 6460 1.186200 TCACCGAGGAGATCACAAGG 58.814 55.000 0.00 0.00 0.00 3.61
6090 6461 3.319137 TTTCACCGAGGAGATCACAAG 57.681 47.619 0.00 0.00 0.00 3.16
6091 6462 3.599343 CATTTCACCGAGGAGATCACAA 58.401 45.455 0.00 0.00 0.00 3.33
6092 6463 2.093500 CCATTTCACCGAGGAGATCACA 60.093 50.000 0.00 0.00 0.00 3.58
6093 6464 2.555199 CCATTTCACCGAGGAGATCAC 58.445 52.381 0.00 0.00 0.00 3.06
6094 6465 1.486310 CCCATTTCACCGAGGAGATCA 59.514 52.381 0.00 0.00 0.00 2.92
6095 6466 1.202698 CCCCATTTCACCGAGGAGATC 60.203 57.143 0.00 0.00 0.00 2.75
6096 6467 0.839946 CCCCATTTCACCGAGGAGAT 59.160 55.000 0.00 0.00 0.00 2.75
6097 6468 1.910580 GCCCCATTTCACCGAGGAGA 61.911 60.000 0.00 0.00 0.00 3.71
6098 6469 1.452108 GCCCCATTTCACCGAGGAG 60.452 63.158 0.00 0.00 0.00 3.69
6099 6470 1.497309 AAGCCCCATTTCACCGAGGA 61.497 55.000 0.00 0.00 0.00 3.71
6100 6471 0.611896 AAAGCCCCATTTCACCGAGG 60.612 55.000 0.00 0.00 0.00 4.63
6101 6472 0.527565 CAAAGCCCCATTTCACCGAG 59.472 55.000 0.00 0.00 0.00 4.63
6102 6473 1.531739 GCAAAGCCCCATTTCACCGA 61.532 55.000 0.00 0.00 0.00 4.69
6103 6474 1.079888 GCAAAGCCCCATTTCACCG 60.080 57.895 0.00 0.00 0.00 4.94
6104 6475 0.686789 AAGCAAAGCCCCATTTCACC 59.313 50.000 0.00 0.00 0.00 4.02
6105 6476 1.344114 TGAAGCAAAGCCCCATTTCAC 59.656 47.619 0.00 0.00 0.00 3.18
6106 6477 1.344114 GTGAAGCAAAGCCCCATTTCA 59.656 47.619 0.00 0.00 0.00 2.69
6107 6478 1.344114 TGTGAAGCAAAGCCCCATTTC 59.656 47.619 0.00 0.00 0.00 2.17
6108 6479 1.345415 CTGTGAAGCAAAGCCCCATTT 59.655 47.619 0.00 0.00 0.00 2.32
6109 6480 0.971386 CTGTGAAGCAAAGCCCCATT 59.029 50.000 0.00 0.00 0.00 3.16
6110 6481 0.901580 CCTGTGAAGCAAAGCCCCAT 60.902 55.000 0.00 0.00 0.00 4.00
6111 6482 1.531365 CCTGTGAAGCAAAGCCCCA 60.531 57.895 0.00 0.00 0.00 4.96
6112 6483 2.278330 CCCTGTGAAGCAAAGCCCC 61.278 63.158 0.00 0.00 0.00 5.80
6113 6484 2.935740 GCCCTGTGAAGCAAAGCCC 61.936 63.158 0.00 0.00 0.00 5.19
6114 6485 1.905354 AGCCCTGTGAAGCAAAGCC 60.905 57.895 0.00 0.00 0.00 4.35
6115 6486 1.174712 TCAGCCCTGTGAAGCAAAGC 61.175 55.000 0.00 0.00 0.00 3.51
6116 6487 1.471684 GATCAGCCCTGTGAAGCAAAG 59.528 52.381 0.00 0.00 0.00 2.77
6117 6488 1.074405 AGATCAGCCCTGTGAAGCAAA 59.926 47.619 0.00 0.00 0.00 3.68
6118 6489 0.694771 AGATCAGCCCTGTGAAGCAA 59.305 50.000 0.00 0.00 0.00 3.91
6119 6490 0.035725 CAGATCAGCCCTGTGAAGCA 60.036 55.000 0.00 0.00 0.00 3.91
6120 6491 1.375098 GCAGATCAGCCCTGTGAAGC 61.375 60.000 0.00 0.00 34.29 3.86
6121 6492 0.035725 TGCAGATCAGCCCTGTGAAG 60.036 55.000 7.72 0.00 34.29 3.02
6122 6493 0.035725 CTGCAGATCAGCCCTGTGAA 60.036 55.000 8.42 0.00 35.78 3.18
6123 6494 1.600638 CTGCAGATCAGCCCTGTGA 59.399 57.895 8.42 0.00 35.78 3.58
6124 6495 1.451567 CCTGCAGATCAGCCCTGTG 60.452 63.158 17.39 0.00 41.50 3.66
6125 6496 0.987081 ATCCTGCAGATCAGCCCTGT 60.987 55.000 17.39 0.00 41.50 4.00
6126 6497 0.535328 CATCCTGCAGATCAGCCCTG 60.535 60.000 17.39 0.00 41.50 4.45
6127 6498 1.706995 CCATCCTGCAGATCAGCCCT 61.707 60.000 17.39 0.00 41.50 5.19
6128 6499 1.228184 CCATCCTGCAGATCAGCCC 60.228 63.158 17.39 0.00 41.50 5.19
6129 6500 1.228184 CCCATCCTGCAGATCAGCC 60.228 63.158 17.39 0.00 41.50 4.85
6130 6501 1.897615 GCCCATCCTGCAGATCAGC 60.898 63.158 17.39 7.62 41.50 4.26
6131 6502 0.535328 CAGCCCATCCTGCAGATCAG 60.535 60.000 17.39 0.00 42.49 2.90
6132 6503 1.530283 CAGCCCATCCTGCAGATCA 59.470 57.895 17.39 0.00 30.59 2.92
6133 6504 4.477413 CAGCCCATCCTGCAGATC 57.523 61.111 17.39 0.00 30.59 2.75
6154 6525 2.368221 CTCCTCTTCAAGCCTCTATGGG 59.632 54.545 0.00 0.00 36.00 4.00
6155 6526 3.303938 TCTCCTCTTCAAGCCTCTATGG 58.696 50.000 0.00 0.00 39.35 2.74
6156 6527 4.262549 CCATCTCCTCTTCAAGCCTCTATG 60.263 50.000 0.00 0.00 0.00 2.23
6157 6528 3.903090 CCATCTCCTCTTCAAGCCTCTAT 59.097 47.826 0.00 0.00 0.00 1.98
6158 6529 3.303938 CCATCTCCTCTTCAAGCCTCTA 58.696 50.000 0.00 0.00 0.00 2.43
6159 6530 2.117865 CCATCTCCTCTTCAAGCCTCT 58.882 52.381 0.00 0.00 0.00 3.69
6160 6531 1.140652 CCCATCTCCTCTTCAAGCCTC 59.859 57.143 0.00 0.00 0.00 4.70
6161 6532 1.211456 CCCATCTCCTCTTCAAGCCT 58.789 55.000 0.00 0.00 0.00 4.58
6162 6533 0.465278 GCCCATCTCCTCTTCAAGCC 60.465 60.000 0.00 0.00 0.00 4.35
6163 6534 0.545646 AGCCCATCTCCTCTTCAAGC 59.454 55.000 0.00 0.00 0.00 4.01
6164 6535 1.134159 CCAGCCCATCTCCTCTTCAAG 60.134 57.143 0.00 0.00 0.00 3.02
6165 6536 0.914644 CCAGCCCATCTCCTCTTCAA 59.085 55.000 0.00 0.00 0.00 2.69
6166 6537 0.043183 TCCAGCCCATCTCCTCTTCA 59.957 55.000 0.00 0.00 0.00 3.02
6167 6538 0.467804 GTCCAGCCCATCTCCTCTTC 59.532 60.000 0.00 0.00 0.00 2.87
6168 6539 1.333636 CGTCCAGCCCATCTCCTCTT 61.334 60.000 0.00 0.00 0.00 2.85
6169 6540 1.760086 CGTCCAGCCCATCTCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
6170 6541 1.330655 TTCGTCCAGCCCATCTCCTC 61.331 60.000 0.00 0.00 0.00 3.71
6171 6542 1.306141 TTCGTCCAGCCCATCTCCT 60.306 57.895 0.00 0.00 0.00 3.69
6172 6543 3.309582 TTCGTCCAGCCCATCTCC 58.690 61.111 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.