Multiple sequence alignment - TraesCS5D01G500000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G500000 chr5D 100.000 4583 0 0 1716 6298 528882763 528878181 0.000000e+00 8464.0
1 TraesCS5D01G500000 chr5D 100.000 1438 0 0 1 1438 528884478 528883041 0.000000e+00 2656.0
2 TraesCS5D01G500000 chr5D 78.219 1235 176 56 3517 4704 419366530 419367718 0.000000e+00 704.0
3 TraesCS5D01G500000 chr5D 82.505 543 81 10 3694 4234 528846616 528846086 1.240000e-126 464.0
4 TraesCS5D01G500000 chr5D 78.391 634 98 26 4698 5314 528845578 528844967 5.960000e-100 375.0
5 TraesCS5D01G500000 chr5D 87.574 169 17 3 4264 4431 528845986 528845821 6.440000e-45 193.0
6 TraesCS5D01G500000 chr5D 84.615 182 15 7 4511 4682 528845800 528845622 1.090000e-37 169.0
7 TraesCS5D01G500000 chr5A 89.299 2084 116 35 3663 5701 657182862 657180841 0.000000e+00 2514.0
8 TraesCS5D01G500000 chr5A 78.994 1252 161 65 3517 4704 534988454 534987241 0.000000e+00 761.0
9 TraesCS5D01G500000 chr5A 81.737 898 83 43 1718 2565 657184431 657183565 0.000000e+00 675.0
10 TraesCS5D01G500000 chr5A 79.265 762 110 29 3507 4234 657105944 657105197 7.340000e-134 488.0
11 TraesCS5D01G500000 chr5A 82.255 603 55 20 3077 3667 657183507 657182945 2.050000e-129 473.0
12 TraesCS5D01G500000 chr5A 77.358 848 113 43 4511 5309 657104903 657104086 4.510000e-116 429.0
13 TraesCS5D01G500000 chr5A 84.652 417 43 9 5761 6165 657180839 657180432 4.580000e-106 396.0
14 TraesCS5D01G500000 chr5A 78.325 609 52 40 842 1438 657184993 657184453 2.830000e-83 320.0
15 TraesCS5D01G500000 chr5A 79.781 366 61 11 4953 5314 534986995 534986639 2.910000e-63 254.0
16 TraesCS5D01G500000 chr5A 80.634 284 40 9 1878 2152 657106852 657106575 8.280000e-49 206.0
17 TraesCS5D01G500000 chr5A 91.852 135 9 2 4298 4431 657105057 657104924 3.000000e-43 187.0
18 TraesCS5D01G500000 chr5B 93.750 1280 58 10 3201 4465 666126981 666125709 0.000000e+00 1901.0
19 TraesCS5D01G500000 chr5B 92.408 1304 74 12 109 1403 666129996 666128709 0.000000e+00 1836.0
20 TraesCS5D01G500000 chr5B 95.233 944 30 4 1996 2929 666128281 666127343 0.000000e+00 1480.0
21 TraesCS5D01G500000 chr5B 93.264 965 39 10 4498 5443 666125621 666124664 0.000000e+00 1399.0
22 TraesCS5D01G500000 chr5B 77.896 1692 246 79 3693 5314 665994977 665993344 0.000000e+00 935.0
23 TraesCS5D01G500000 chr5B 91.824 159 8 5 2990 3146 666127116 666126961 3.820000e-52 217.0
24 TraesCS5D01G500000 chr5B 86.256 211 12 4 1755 1949 666128500 666128291 4.950000e-51 213.0
25 TraesCS5D01G500000 chr7A 82.713 376 57 5 3091 3462 625379406 625379035 1.690000e-85 327.0
26 TraesCS5D01G500000 chr7A 83.384 331 49 4 3092 3418 227229475 227229803 1.030000e-77 302.0
27 TraesCS5D01G500000 chr7A 80.366 382 59 11 3082 3453 541896827 541897202 6.220000e-70 276.0
28 TraesCS5D01G500000 chr7B 82.713 376 54 9 3091 3462 586334757 586334389 2.190000e-84 324.0
29 TraesCS5D01G500000 chr2D 83.003 353 52 7 3092 3438 645702659 645702309 4.740000e-81 313.0
30 TraesCS5D01G500000 chr1A 81.818 374 57 7 3091 3459 191546519 191546152 2.850000e-78 303.0
31 TraesCS5D01G500000 chr6D 81.667 360 59 5 3083 3437 27459155 27458798 6.180000e-75 292.0
32 TraesCS5D01G500000 chr6D 80.811 370 54 15 3093 3455 448141742 448142101 2.240000e-69 274.0
33 TraesCS5D01G500000 chr2B 81.714 350 55 5 3092 3437 455589780 455590124 3.720000e-72 283.0
34 TraesCS5D01G500000 chr2B 86.916 214 27 1 4006 4218 559184356 559184143 8.160000e-59 239.0
35 TraesCS5D01G500000 chr2B 73.310 281 51 17 158 428 475656820 475656554 1.460000e-11 82.4
36 TraesCS5D01G500000 chr2A 86.758 219 27 2 4006 4222 619620412 619620194 6.310000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G500000 chr5D 528878181 528884478 6297 True 5560.000000 8464 100.00000 1 6298 2 chr5D.!!$R2 6297
1 TraesCS5D01G500000 chr5D 419366530 419367718 1188 False 704.000000 704 78.21900 3517 4704 1 chr5D.!!$F1 1187
2 TraesCS5D01G500000 chr5D 528844967 528846616 1649 True 300.250000 464 83.27125 3694 5314 4 chr5D.!!$R1 1620
3 TraesCS5D01G500000 chr5A 657180432 657184993 4561 True 875.600000 2514 83.25360 842 6165 5 chr5A.!!$R3 5323
4 TraesCS5D01G500000 chr5A 534986639 534988454 1815 True 507.500000 761 79.38750 3517 5314 2 chr5A.!!$R1 1797
5 TraesCS5D01G500000 chr5A 657104086 657106852 2766 True 327.500000 488 82.27725 1878 5309 4 chr5A.!!$R2 3431
6 TraesCS5D01G500000 chr5B 666124664 666129996 5332 True 1174.333333 1901 92.12250 109 5443 6 chr5B.!!$R2 5334
7 TraesCS5D01G500000 chr5B 665993344 665994977 1633 True 935.000000 935 77.89600 3693 5314 1 chr5B.!!$R1 1621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.039074 CAGGGCGCGAGAATACCTAG 60.039 60.000 12.10 0.0 0.00 3.02 F
83 84 0.039346 GGGCGCGAGAATACCTAGAC 60.039 60.000 12.10 0.0 0.00 2.59 F
462 464 0.106708 GATCTGCAGCCGAATACCCA 59.893 55.000 9.47 0.0 0.00 4.51 F
756 758 1.003866 GAAGTTGAGACGTGTTGCACC 60.004 52.381 0.00 0.0 0.00 5.01 F
1957 2003 1.069636 GTGGCAAGAGCTGTCTTTTCG 60.070 52.381 0.00 0.0 41.40 3.46 F
2295 2369 1.000496 GAGAACGGCCCCTAATAGTCG 60.000 57.143 0.00 0.0 0.00 4.18 F
2931 3145 1.836802 TGCACTGTACCTATGGATGCA 59.163 47.619 0.00 0.0 39.16 3.96 F
3621 4011 0.534412 AGAGCTGGATCGTCAACCTG 59.466 55.000 0.00 0.0 0.00 4.00 F
4823 5562 1.303309 CGCATCCCAGATGAAAGTCC 58.697 55.000 8.74 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 1975 0.533755 GACAGCTCTTGCCACACTGT 60.534 55.000 0.00 0.0 43.93 3.55 R
2006 2060 1.733526 GTCTGCGGTGCTGGTTTTT 59.266 52.632 0.00 0.0 0.00 1.94 R
2271 2345 1.580059 ATTAGGGGCCGTTCTCAAGA 58.420 50.000 3.09 0.0 0.00 3.02 R
2295 2369 2.884827 ACGGTAAGCCAATAAGACGTC 58.115 47.619 7.70 7.7 34.09 4.34 R
2967 3322 0.037790 GCCCGTCATGCCTCTATCTC 60.038 60.000 0.00 0.0 0.00 2.75 R
3099 3479 1.010935 CGATCACTGCAGCAACGAGT 61.011 55.000 15.27 0.0 0.00 4.18 R
3755 4261 3.006752 GCCTCTCCATGAGATTCGAAGAT 59.993 47.826 3.35 0.0 45.39 2.40 R
5054 5814 0.031917 TCCATGTAGCCGGGACCTTA 60.032 55.000 2.18 0.0 0.00 2.69 R
5889 6695 0.034670 GGCAAATGAGAGAGGGTGCT 60.035 55.000 0.00 0.0 32.61 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.922171 ACCAAGAGCTTCATCCCTAAG 57.078 47.619 0.00 0.00 0.00 2.18
21 22 2.507471 ACCAAGAGCTTCATCCCTAAGG 59.493 50.000 0.00 0.00 0.00 2.69
33 34 2.488836 TCCCTAAGGATCCTCCAAACC 58.511 52.381 16.52 0.00 39.61 3.27
34 35 1.495148 CCCTAAGGATCCTCCAAACCC 59.505 57.143 16.52 0.00 39.61 4.11
35 36 2.205342 CCTAAGGATCCTCCAAACCCA 58.795 52.381 16.52 0.00 39.61 4.51
36 37 2.785857 CCTAAGGATCCTCCAAACCCAT 59.214 50.000 16.52 0.00 39.61 4.00
37 38 3.181439 CCTAAGGATCCTCCAAACCCATC 60.181 52.174 16.52 0.00 39.61 3.51
38 39 1.985622 AGGATCCTCCAAACCCATCA 58.014 50.000 9.02 0.00 39.61 3.07
39 40 1.849039 AGGATCCTCCAAACCCATCAG 59.151 52.381 9.02 0.00 39.61 2.90
40 41 1.685148 GATCCTCCAAACCCATCAGC 58.315 55.000 0.00 0.00 0.00 4.26
41 42 1.002069 ATCCTCCAAACCCATCAGCA 58.998 50.000 0.00 0.00 0.00 4.41
42 43 1.002069 TCCTCCAAACCCATCAGCAT 58.998 50.000 0.00 0.00 0.00 3.79
43 44 2.204463 TCCTCCAAACCCATCAGCATA 58.796 47.619 0.00 0.00 0.00 3.14
44 45 2.580322 TCCTCCAAACCCATCAGCATAA 59.420 45.455 0.00 0.00 0.00 1.90
45 46 2.954318 CCTCCAAACCCATCAGCATAAG 59.046 50.000 0.00 0.00 0.00 1.73
46 47 2.954318 CTCCAAACCCATCAGCATAAGG 59.046 50.000 0.00 0.00 0.00 2.69
47 48 2.034124 CCAAACCCATCAGCATAAGGG 58.966 52.381 0.00 0.00 46.96 3.95
51 52 1.972872 CCCATCAGCATAAGGGTCAC 58.027 55.000 0.00 0.00 36.52 3.67
52 53 1.212688 CCCATCAGCATAAGGGTCACA 59.787 52.381 0.00 0.00 36.52 3.58
53 54 2.158564 CCCATCAGCATAAGGGTCACAT 60.159 50.000 0.00 0.00 36.52 3.21
54 55 3.559069 CCATCAGCATAAGGGTCACATT 58.441 45.455 0.00 0.00 0.00 2.71
55 56 3.567164 CCATCAGCATAAGGGTCACATTC 59.433 47.826 0.00 0.00 0.00 2.67
56 57 3.998913 TCAGCATAAGGGTCACATTCA 57.001 42.857 0.00 0.00 0.00 2.57
57 58 4.508551 TCAGCATAAGGGTCACATTCAT 57.491 40.909 0.00 0.00 0.00 2.57
58 59 4.201657 TCAGCATAAGGGTCACATTCATG 58.798 43.478 0.00 0.00 0.00 3.07
59 60 2.954318 AGCATAAGGGTCACATTCATGC 59.046 45.455 0.00 0.00 38.02 4.06
60 61 2.287188 GCATAAGGGTCACATTCATGCG 60.287 50.000 0.00 0.00 0.00 4.73
61 62 2.036958 TAAGGGTCACATTCATGCGG 57.963 50.000 0.00 0.00 0.00 5.69
62 63 1.315257 AAGGGTCACATTCATGCGGC 61.315 55.000 0.00 0.00 0.00 6.53
63 64 2.045708 GGGTCACATTCATGCGGCA 61.046 57.895 4.58 4.58 0.00 5.69
64 65 1.430632 GGTCACATTCATGCGGCAG 59.569 57.895 9.25 0.79 0.00 4.85
65 66 1.430632 GTCACATTCATGCGGCAGG 59.569 57.895 8.58 8.58 0.00 4.85
66 67 1.750018 TCACATTCATGCGGCAGGG 60.750 57.895 15.21 6.44 0.00 4.45
67 68 3.142838 ACATTCATGCGGCAGGGC 61.143 61.111 15.21 0.00 0.00 5.19
68 69 4.260355 CATTCATGCGGCAGGGCG 62.260 66.667 15.21 11.16 35.06 6.13
76 77 4.585526 CGGCAGGGCGCGAGAATA 62.586 66.667 12.10 0.00 43.84 1.75
77 78 2.967615 GGCAGGGCGCGAGAATAC 60.968 66.667 12.10 0.00 43.84 1.89
78 79 2.967615 GCAGGGCGCGAGAATACC 60.968 66.667 12.10 0.00 0.00 2.73
79 80 2.815308 CAGGGCGCGAGAATACCT 59.185 61.111 12.10 3.46 0.00 3.08
80 81 2.038690 CAGGGCGCGAGAATACCTA 58.961 57.895 12.10 0.00 0.00 3.08
81 82 0.039074 CAGGGCGCGAGAATACCTAG 60.039 60.000 12.10 0.00 0.00 3.02
82 83 0.178998 AGGGCGCGAGAATACCTAGA 60.179 55.000 12.10 0.00 0.00 2.43
83 84 0.039346 GGGCGCGAGAATACCTAGAC 60.039 60.000 12.10 0.00 0.00 2.59
84 85 0.953003 GGCGCGAGAATACCTAGACT 59.047 55.000 12.10 0.00 0.00 3.24
85 86 1.069091 GGCGCGAGAATACCTAGACTC 60.069 57.143 12.10 0.00 0.00 3.36
86 87 1.069091 GCGCGAGAATACCTAGACTCC 60.069 57.143 12.10 0.00 0.00 3.85
87 88 2.219458 CGCGAGAATACCTAGACTCCA 58.781 52.381 0.00 0.00 0.00 3.86
88 89 2.224549 CGCGAGAATACCTAGACTCCAG 59.775 54.545 0.00 0.00 0.00 3.86
89 90 2.554893 GCGAGAATACCTAGACTCCAGG 59.445 54.545 0.00 0.00 39.25 4.45
91 92 3.816523 CGAGAATACCTAGACTCCAGGTC 59.183 52.174 0.00 0.00 43.04 3.85
92 93 4.146564 GAGAATACCTAGACTCCAGGTCC 58.853 52.174 0.00 0.00 43.04 4.46
93 94 3.794971 AGAATACCTAGACTCCAGGTCCT 59.205 47.826 0.00 0.00 43.04 3.85
94 95 4.233287 AGAATACCTAGACTCCAGGTCCTT 59.767 45.833 0.00 0.00 43.04 3.36
95 96 5.435707 AGAATACCTAGACTCCAGGTCCTTA 59.564 44.000 0.00 0.00 43.04 2.69
96 97 3.673543 ACCTAGACTCCAGGTCCTTAG 57.326 52.381 0.00 0.00 43.04 2.18
97 98 2.245287 ACCTAGACTCCAGGTCCTTAGG 59.755 54.545 9.66 9.66 43.04 2.69
98 99 2.312390 CTAGACTCCAGGTCCTTAGGC 58.688 57.143 0.00 0.00 45.54 3.93
99 100 0.413832 AGACTCCAGGTCCTTAGGCA 59.586 55.000 6.62 0.00 45.54 4.75
100 101 1.203313 AGACTCCAGGTCCTTAGGCAA 60.203 52.381 6.62 0.00 45.54 4.52
101 102 1.208293 GACTCCAGGTCCTTAGGCAAG 59.792 57.143 0.00 0.00 38.93 4.01
102 103 0.107459 CTCCAGGTCCTTAGGCAAGC 60.107 60.000 0.00 0.00 0.00 4.01
103 104 0.840288 TCCAGGTCCTTAGGCAAGCA 60.840 55.000 0.00 0.00 0.00 3.91
104 105 0.257039 CCAGGTCCTTAGGCAAGCAT 59.743 55.000 0.00 0.00 0.00 3.79
105 106 1.490490 CCAGGTCCTTAGGCAAGCATA 59.510 52.381 0.00 0.00 0.00 3.14
106 107 2.107204 CCAGGTCCTTAGGCAAGCATAT 59.893 50.000 0.00 0.00 0.00 1.78
107 108 3.327757 CCAGGTCCTTAGGCAAGCATATA 59.672 47.826 0.00 0.00 0.00 0.86
111 112 4.184629 GTCCTTAGGCAAGCATATATCCG 58.815 47.826 0.00 0.00 0.00 4.18
143 144 1.900254 TATGGTATTCCTGGTGCCCA 58.100 50.000 0.00 0.00 34.23 5.36
145 146 0.550914 TGGTATTCCTGGTGCCCATC 59.449 55.000 0.00 0.00 30.82 3.51
148 149 0.468226 TATTCCTGGTGCCCATCGAC 59.532 55.000 0.00 0.00 30.82 4.20
151 152 4.838152 CTGGTGCCCATCGACCCG 62.838 72.222 0.00 0.00 30.82 5.28
167 168 3.291383 CGCCGGCCCAAAGAAACA 61.291 61.111 23.46 0.00 0.00 2.83
168 169 2.338620 GCCGGCCCAAAGAAACAC 59.661 61.111 18.11 0.00 0.00 3.32
179 180 5.186198 CCCAAAGAAACACGATAGATCCTT 58.814 41.667 0.00 0.00 41.38 3.36
180 181 5.065218 CCCAAAGAAACACGATAGATCCTTG 59.935 44.000 0.00 0.00 41.38 3.61
204 205 0.327000 AGGAGCTATGCACCCCTTCT 60.327 55.000 0.00 0.00 40.09 2.85
220 221 6.432783 CACCCCTTCTGACAAAATATACAACA 59.567 38.462 0.00 0.00 0.00 3.33
221 222 7.122650 CACCCCTTCTGACAAAATATACAACAT 59.877 37.037 0.00 0.00 0.00 2.71
222 223 8.333235 ACCCCTTCTGACAAAATATACAACATA 58.667 33.333 0.00 0.00 0.00 2.29
223 224 9.354673 CCCCTTCTGACAAAATATACAACATAT 57.645 33.333 0.00 0.00 0.00 1.78
255 256 4.609866 TGGGAAGGATAGAGAGACAAGA 57.390 45.455 0.00 0.00 0.00 3.02
284 285 9.730420 CGATAAATACAAATTTACTCCCTTTGG 57.270 33.333 0.00 0.00 39.71 3.28
304 306 2.511600 GTGAATCTCCCGGCCACG 60.512 66.667 2.24 0.00 40.55 4.94
323 325 1.569479 GGCTCTGTCTTGGACGCAAC 61.569 60.000 0.00 0.00 34.95 4.17
326 328 2.280524 TGTCTTGGACGCAACCCG 60.281 61.111 0.00 0.00 44.21 5.28
340 342 1.468340 ACCCGTCCTGTAAGAGGGT 59.532 57.895 0.00 0.00 46.24 4.34
344 346 1.831736 CCGTCCTGTAAGAGGGTCAAT 59.168 52.381 0.00 0.00 43.06 2.57
348 350 2.496070 TCCTGTAAGAGGGTCAATGTCG 59.504 50.000 0.00 0.00 43.06 4.35
349 351 2.233922 CCTGTAAGAGGGTCAATGTCGT 59.766 50.000 0.00 0.00 38.36 4.34
354 356 1.482593 AGAGGGTCAATGTCGTGGATC 59.517 52.381 0.00 0.00 0.00 3.36
355 357 1.207089 GAGGGTCAATGTCGTGGATCA 59.793 52.381 0.00 0.00 0.00 2.92
357 359 1.656652 GGTCAATGTCGTGGATCAGG 58.343 55.000 0.00 0.00 0.00 3.86
409 411 1.139498 TGCAATGGGGAAGGAGGACA 61.139 55.000 0.00 0.00 0.00 4.02
430 432 5.570320 ACAGCCTACAATTAATGTTGTCCT 58.430 37.500 0.00 0.00 43.63 3.85
460 462 1.599542 GTTGATCTGCAGCCGAATACC 59.400 52.381 9.47 0.00 0.00 2.73
462 464 0.106708 GATCTGCAGCCGAATACCCA 59.893 55.000 9.47 0.00 0.00 4.51
532 534 9.535878 CCAACAGTTCCTAGATAAGAAAGTATC 57.464 37.037 0.00 0.00 0.00 2.24
569 571 4.504858 ACGTTAGATCTTTGGTGGTGATC 58.495 43.478 0.00 0.00 37.46 2.92
574 576 1.052617 TCTTTGGTGGTGATCGGTCA 58.947 50.000 0.00 0.00 0.00 4.02
577 579 1.819928 TTGGTGGTGATCGGTCATTG 58.180 50.000 0.00 0.00 36.60 2.82
589 591 6.254589 GTGATCGGTCATTGTCTTTCTCTTAG 59.745 42.308 0.00 0.00 36.60 2.18
598 600 6.851222 TTGTCTTTCTCTTAGTTTGAGCAG 57.149 37.500 0.00 0.00 0.00 4.24
631 633 6.895756 TGACTATAGAAGATGTGGGTGTAACT 59.104 38.462 6.78 0.00 36.74 2.24
632 634 8.057011 TGACTATAGAAGATGTGGGTGTAACTA 58.943 37.037 6.78 0.00 36.74 2.24
633 635 9.080097 GACTATAGAAGATGTGGGTGTAACTAT 57.920 37.037 6.78 0.00 36.74 2.12
728 730 1.724929 GATATGGACGCGACGGACG 60.725 63.158 15.93 0.00 45.66 4.79
749 751 1.535896 TCCGAGAGAAGTTGAGACGTG 59.464 52.381 0.00 0.00 0.00 4.49
756 758 1.003866 GAAGTTGAGACGTGTTGCACC 60.004 52.381 0.00 0.00 0.00 5.01
777 779 1.664873 CGATCCCAGAGTACGAGACA 58.335 55.000 0.00 0.00 0.00 3.41
778 780 2.222886 CGATCCCAGAGTACGAGACAT 58.777 52.381 0.00 0.00 0.00 3.06
817 819 4.213270 TCACTTCTTGAAATTACGTGCTGG 59.787 41.667 0.00 0.00 0.00 4.85
853 855 4.402616 TGGAATGGGGATTGACTTTCTT 57.597 40.909 0.00 0.00 0.00 2.52
861 863 4.322499 GGGGATTGACTTTCTTGTACGAGA 60.322 45.833 8.87 8.87 0.00 4.04
901 903 5.105392 TCCACTTCTTGAAATTTTGTGCTGT 60.105 36.000 0.00 0.00 0.00 4.40
1188 1202 5.591877 GCATATATATTTCTTGGAGCCAGGG 59.408 44.000 0.00 0.00 0.00 4.45
1189 1203 6.579042 GCATATATATTTCTTGGAGCCAGGGA 60.579 42.308 0.00 0.00 0.00 4.20
1242 1266 3.397618 TGAACTTGAAGATGGGGGAGAAA 59.602 43.478 0.00 0.00 0.00 2.52
1288 1312 3.792124 GCTTTCTCTTGTGGTTTTGGTCG 60.792 47.826 0.00 0.00 0.00 4.79
1403 1427 7.659390 TCGATGCCAATTTTTAATCAACCTTTT 59.341 29.630 0.00 0.00 0.00 2.27
1421 1445 9.750882 CAACCTTTTAATACTACGTTTTAGAGC 57.249 33.333 0.00 0.00 0.00 4.09
1776 1800 4.335735 TCCATTCAAAGTGAATCCCCAT 57.664 40.909 0.47 0.00 43.03 4.00
1850 1877 8.127327 ACTAGTAAGTGCTATAACACGTATGTG 58.873 37.037 13.64 13.64 45.45 3.21
1895 1938 9.376075 CATGTAGTCTCAAACATAAAGACAGAT 57.624 33.333 4.73 0.00 41.49 2.90
1896 1939 8.763049 TGTAGTCTCAAACATAAAGACAGATG 57.237 34.615 4.73 0.00 41.49 2.90
1897 1940 6.734104 AGTCTCAAACATAAAGACAGATGC 57.266 37.500 4.73 0.00 41.49 3.91
1957 2003 1.069636 GTGGCAAGAGCTGTCTTTTCG 60.070 52.381 0.00 0.00 41.40 3.46
1959 2005 1.195674 GGCAAGAGCTGTCTTTTCGTC 59.804 52.381 0.00 0.00 41.40 4.20
1964 2010 4.802876 AGAGCTGTCTTTTCGTCAAAAG 57.197 40.909 0.00 3.55 46.99 2.27
1965 2011 3.561725 AGAGCTGTCTTTTCGTCAAAAGG 59.438 43.478 8.87 0.00 46.03 3.11
1968 2014 4.035675 AGCTGTCTTTTCGTCAAAAGGAAG 59.964 41.667 8.87 8.00 46.03 3.46
1971 2017 4.338118 TGTCTTTTCGTCAAAAGGAAGCAT 59.662 37.500 8.87 0.00 46.03 3.79
1973 2019 5.851703 GTCTTTTCGTCAAAAGGAAGCATAC 59.148 40.000 8.87 0.00 46.03 2.39
1974 2020 4.759516 TTTCGTCAAAAGGAAGCATACC 57.240 40.909 0.00 0.00 31.42 2.73
1977 2023 5.155278 TCGTCAAAAGGAAGCATACCTTA 57.845 39.130 8.97 0.00 45.55 2.69
1979 2025 5.046878 TCGTCAAAAGGAAGCATACCTTAGA 60.047 40.000 8.97 7.96 45.55 2.10
1980 2026 5.817816 CGTCAAAAGGAAGCATACCTTAGAT 59.182 40.000 8.97 0.00 45.55 1.98
1981 2027 6.316390 CGTCAAAAGGAAGCATACCTTAGATT 59.684 38.462 8.97 0.00 45.55 2.40
1983 2029 8.523658 GTCAAAAGGAAGCATACCTTAGATTTT 58.476 33.333 8.97 0.00 45.55 1.82
1984 2030 9.747898 TCAAAAGGAAGCATACCTTAGATTTTA 57.252 29.630 8.97 0.00 45.55 1.52
2006 2060 8.774546 TTTAATTACCATATGGAAATCAGGCA 57.225 30.769 28.77 1.55 38.94 4.75
2044 2099 3.146847 ACCCAACCTTCTCGATTTTCAC 58.853 45.455 0.00 0.00 0.00 3.18
2053 2110 6.109359 CCTTCTCGATTTTCACACCTTAGAT 58.891 40.000 0.00 0.00 0.00 1.98
2155 2225 9.072375 CCACTCTATGTTTGTATCTATCTCTCA 57.928 37.037 0.00 0.00 0.00 3.27
2295 2369 1.000496 GAGAACGGCCCCTAATAGTCG 60.000 57.143 0.00 0.00 0.00 4.18
2314 2388 1.850441 CGACGTCTTATTGGCTTACCG 59.150 52.381 14.70 0.00 39.70 4.02
2469 2583 7.253422 GTCATGAATTTGTTGGATCCTTACAG 58.747 38.462 14.23 4.28 0.00 2.74
2474 2588 7.122650 TGAATTTGTTGGATCCTTACAGATTCC 59.877 37.037 32.25 23.86 40.16 3.01
2594 2769 4.400567 AGCTCTCTTGCAATATTCCAAACC 59.599 41.667 0.00 0.00 34.99 3.27
2883 3097 4.220693 TGGGATGACGATCTGTTGAATT 57.779 40.909 0.00 0.00 0.00 2.17
2893 3107 6.586344 ACGATCTGTTGAATTGATACCTCAT 58.414 36.000 0.00 0.00 0.00 2.90
2915 3129 6.867816 TCATGTAAAATGGAGAAAACATGCAC 59.132 34.615 8.08 0.00 42.35 4.57
2929 3143 4.077300 ACATGCACTGTACCTATGGATG 57.923 45.455 16.13 16.13 44.88 3.51
2930 3144 2.620251 TGCACTGTACCTATGGATGC 57.380 50.000 0.00 0.00 0.00 3.91
2931 3145 1.836802 TGCACTGTACCTATGGATGCA 59.163 47.619 0.00 0.00 39.16 3.96
2932 3146 2.439135 TGCACTGTACCTATGGATGCAT 59.561 45.455 4.68 4.68 36.72 3.96
2933 3147 3.070018 GCACTGTACCTATGGATGCATC 58.930 50.000 18.81 18.81 0.00 3.91
2934 3148 3.244353 GCACTGTACCTATGGATGCATCT 60.244 47.826 25.28 10.06 0.00 2.90
2935 3149 4.744867 GCACTGTACCTATGGATGCATCTT 60.745 45.833 25.28 15.69 0.00 2.40
2936 3150 4.993584 CACTGTACCTATGGATGCATCTTC 59.006 45.833 25.28 11.04 0.00 2.87
2937 3151 4.240888 CTGTACCTATGGATGCATCTTCG 58.759 47.826 25.28 11.68 0.00 3.79
2938 3152 3.895041 TGTACCTATGGATGCATCTTCGA 59.105 43.478 25.28 8.45 0.00 3.71
2939 3153 3.674528 ACCTATGGATGCATCTTCGAG 57.325 47.619 25.28 16.35 0.00 4.04
2967 3322 8.029642 AGTGAAGATTAAAACATACACCTTCG 57.970 34.615 0.00 0.00 33.50 3.79
2982 3337 2.625790 ACCTTCGAGATAGAGGCATGAC 59.374 50.000 0.00 0.00 0.00 3.06
3033 3413 7.984050 CCCGAATCAAGATTATACATATGAGCT 59.016 37.037 10.38 0.00 0.00 4.09
3087 3467 6.021030 TGTACTGACCAACCTAATCTAACCT 58.979 40.000 0.00 0.00 0.00 3.50
3089 3469 4.225267 ACTGACCAACCTAATCTAACCTGG 59.775 45.833 0.00 0.00 0.00 4.45
3139 3519 9.223099 TGATCGATTGCAATATATTTCAGTGAT 57.777 29.630 12.97 3.97 0.00 3.06
3156 3536 9.681692 TTTCAGTGATTTGATTGTATGAAACAG 57.318 29.630 0.00 0.00 39.87 3.16
3157 3537 7.819644 TCAGTGATTTGATTGTATGAAACAGG 58.180 34.615 0.00 0.00 39.87 4.00
3165 3545 8.800370 TTGATTGTATGAAACAGGCATAGTTA 57.200 30.769 0.00 0.00 39.87 2.24
3322 3709 3.746940 TGATGAGATGGCATATGTGGTG 58.253 45.455 0.00 0.00 0.00 4.17
3359 3746 7.012610 TGTGCATGTGATCAACTAATAATGGAG 59.987 37.037 0.00 0.00 0.00 3.86
3399 3789 6.134535 TGTGGTGGGTCTTTAATAAGATGT 57.865 37.500 0.00 0.00 42.14 3.06
3427 3817 6.591448 TGTGTGCATGTTAAGACAATAGAGAG 59.409 38.462 0.00 0.00 39.66 3.20
3430 3820 6.478344 GTGCATGTTAAGACAATAGAGAGAGG 59.522 42.308 0.00 0.00 39.66 3.69
3621 4011 0.534412 AGAGCTGGATCGTCAACCTG 59.466 55.000 0.00 0.00 0.00 4.00
3641 4031 6.479972 CCTGGAGGTACATATACACAGAAA 57.520 41.667 0.00 0.00 33.97 2.52
3653 4062 9.407380 ACATATACACAGAAATATTTTGCCAGA 57.593 29.630 1.43 0.00 0.00 3.86
3672 4168 6.658816 TGCCAGAACATGTGATACATTTTACT 59.341 34.615 0.00 0.00 36.53 2.24
3673 4169 7.148255 TGCCAGAACATGTGATACATTTTACTC 60.148 37.037 0.00 0.00 36.53 2.59
3687 4183 6.842163 ACATTTTACTCAATCCATCGAACAC 58.158 36.000 0.00 0.00 0.00 3.32
3704 4210 3.142838 CAAATGCAGGGAGGCGGG 61.143 66.667 0.00 0.00 36.28 6.13
3842 4348 2.960384 CCCTGGTCCGTACATACATACA 59.040 50.000 0.00 0.00 0.00 2.29
3843 4349 3.576982 CCCTGGTCCGTACATACATACAT 59.423 47.826 0.00 0.00 0.00 2.29
3844 4350 4.768448 CCCTGGTCCGTACATACATACATA 59.232 45.833 0.00 0.00 0.00 2.29
3846 4352 6.330278 CCTGGTCCGTACATACATACATATG 58.670 44.000 0.00 0.00 38.34 1.78
3847 4353 6.275494 TGGTCCGTACATACATACATATGG 57.725 41.667 7.80 0.00 36.95 2.74
3849 4355 5.105473 GGTCCGTACATACATACATATGGCT 60.105 44.000 7.80 0.00 36.95 4.75
3850 4356 6.034591 GTCCGTACATACATACATATGGCTC 58.965 44.000 7.80 0.00 36.95 4.70
4261 4799 1.576577 AGCTCATCCATCCACTGTGA 58.423 50.000 9.86 0.00 0.00 3.58
4494 5173 3.165058 TGCTAGCTGTTGAATCCTACG 57.835 47.619 17.23 0.00 0.00 3.51
4495 5174 2.496070 TGCTAGCTGTTGAATCCTACGT 59.504 45.455 17.23 0.00 0.00 3.57
4496 5175 3.697542 TGCTAGCTGTTGAATCCTACGTA 59.302 43.478 17.23 0.00 0.00 3.57
4605 5299 2.971901 AAAAACCCCGATCTTCCTGT 57.028 45.000 0.00 0.00 0.00 4.00
4682 5386 8.828688 TGATATCATCTCAGCATAGTTTCTTG 57.171 34.615 0.00 0.00 0.00 3.02
4735 5474 7.977853 GCAAATGTAATTCAGATCCATGAAAGT 59.022 33.333 0.00 0.00 42.21 2.66
4823 5562 1.303309 CGCATCCCAGATGAAAGTCC 58.697 55.000 8.74 0.00 0.00 3.85
4886 5637 7.864379 AGCAGCACACTAAATTATGATATTTGC 59.136 33.333 0.00 0.00 0.00 3.68
4948 5708 3.741344 GGTGTCGCATGTATCAATCCTAC 59.259 47.826 0.00 0.00 0.00 3.18
4951 5711 2.888414 TCGCATGTATCAATCCTACGGA 59.112 45.455 0.00 0.00 35.55 4.69
4986 5746 2.220653 ACAGATGGTGGGAATTGTGG 57.779 50.000 0.00 0.00 0.00 4.17
5054 5814 3.865929 CTTCACGCACGGCCAGTCT 62.866 63.158 2.24 0.00 0.00 3.24
5069 5829 0.333993 AGTCTAAGGTCCCGGCTACA 59.666 55.000 0.00 0.00 0.00 2.74
5337 6121 3.825014 ACTCTTAGCGTGTCTTGGAGTAA 59.175 43.478 0.00 0.00 35.34 2.24
5339 6123 4.744570 TCTTAGCGTGTCTTGGAGTAATG 58.255 43.478 0.00 0.00 0.00 1.90
5392 6176 4.694339 GTTACGGAGGAGACAAATATGCT 58.306 43.478 0.00 0.00 0.00 3.79
5410 6197 1.745653 GCTTATCAAGGCAGGTGAACC 59.254 52.381 0.00 0.00 0.00 3.62
5448 6235 2.845363 TGAGCTCAAGCACATCAAGA 57.155 45.000 15.67 0.00 45.16 3.02
5449 6236 3.345508 TGAGCTCAAGCACATCAAGAT 57.654 42.857 15.67 0.00 45.16 2.40
5450 6237 3.682696 TGAGCTCAAGCACATCAAGATT 58.317 40.909 15.67 0.00 45.16 2.40
5451 6238 3.439129 TGAGCTCAAGCACATCAAGATTG 59.561 43.478 15.67 0.00 45.16 2.67
5453 6240 3.690139 AGCTCAAGCACATCAAGATTGAG 59.310 43.478 14.67 14.67 46.12 3.02
5454 6241 3.439476 GCTCAAGCACATCAAGATTGAGT 59.561 43.478 18.55 0.19 45.47 3.41
5455 6242 4.633126 GCTCAAGCACATCAAGATTGAGTA 59.367 41.667 18.55 0.00 45.47 2.59
5456 6243 5.122869 GCTCAAGCACATCAAGATTGAGTAA 59.877 40.000 18.55 0.00 45.47 2.24
5457 6244 6.183360 GCTCAAGCACATCAAGATTGAGTAAT 60.183 38.462 18.55 0.00 45.47 1.89
5458 6245 7.627939 GCTCAAGCACATCAAGATTGAGTAATT 60.628 37.037 18.55 0.00 45.47 1.40
5459 6246 8.791327 TCAAGCACATCAAGATTGAGTAATTA 57.209 30.769 1.32 0.00 41.08 1.40
5460 6247 8.668353 TCAAGCACATCAAGATTGAGTAATTAC 58.332 33.333 7.57 7.57 41.08 1.89
5461 6248 8.453320 CAAGCACATCAAGATTGAGTAATTACA 58.547 33.333 17.65 0.00 41.08 2.41
5462 6249 8.565896 AGCACATCAAGATTGAGTAATTACAA 57.434 30.769 17.65 4.80 41.08 2.41
5489 6285 7.935210 ACTAATTACATTATACAAAGGACCCGG 59.065 37.037 0.00 0.00 0.00 5.73
5493 6289 6.697641 ACATTATACAAAGGACCCGGATAT 57.302 37.500 0.73 0.00 0.00 1.63
5495 6291 7.166167 ACATTATACAAAGGACCCGGATATTC 58.834 38.462 0.73 0.00 0.00 1.75
5496 6292 6.750660 TTATACAAAGGACCCGGATATTCA 57.249 37.500 0.73 0.00 0.00 2.57
5497 6293 3.560636 ACAAAGGACCCGGATATTCAG 57.439 47.619 0.73 0.00 0.00 3.02
5502 6298 0.319641 GACCCGGATATTCAGCGACC 60.320 60.000 0.73 0.00 0.00 4.79
5509 6305 2.029828 GGATATTCAGCGACCGTCAGAT 60.030 50.000 0.00 0.00 0.00 2.90
5515 6311 3.655486 TCAGCGACCGTCAGATTTTTAA 58.345 40.909 0.00 0.00 0.00 1.52
5527 6323 7.967854 CCGTCAGATTTTTAAGCATGACAAATA 59.032 33.333 0.00 0.00 37.50 1.40
5528 6324 9.507280 CGTCAGATTTTTAAGCATGACAAATAT 57.493 29.630 0.00 0.00 37.50 1.28
5538 6335 5.944049 GCATGACAAATATGTTTGCTGAG 57.056 39.130 14.17 4.68 46.84 3.35
5573 6370 5.296813 ACTTGGCGAGCTAACTAAATTTG 57.703 39.130 0.37 0.00 0.00 2.32
5574 6371 3.757745 TGGCGAGCTAACTAAATTTGC 57.242 42.857 0.00 0.00 39.10 3.68
5590 6388 9.096823 ACTAAATTTGCCATCATCATCCAATAT 57.903 29.630 0.00 0.00 0.00 1.28
5598 6396 6.500910 CCATCATCATCCAATATAAATGGCG 58.499 40.000 3.58 0.00 37.88 5.69
5647 6445 2.813226 TTTGGGCCGATCGAACCCTG 62.813 60.000 32.85 13.43 44.56 4.45
5649 6447 4.467084 GGCCGATCGAACCCTGCA 62.467 66.667 18.66 0.00 0.00 4.41
5651 6449 2.885644 CCGATCGAACCCTGCACG 60.886 66.667 18.66 0.00 0.00 5.34
5657 6455 1.671054 CGAACCCTGCACGTCCAAT 60.671 57.895 0.00 0.00 0.00 3.16
5670 6468 3.063452 CACGTCCAATTTGGTATCTTCCG 59.937 47.826 14.98 9.26 39.03 4.30
5678 6476 2.779033 GGTATCTTCCGGCCGTCGT 61.779 63.158 26.12 7.69 37.11 4.34
5683 6481 2.755064 TTCCGGCCGTCGTATCCA 60.755 61.111 26.12 0.00 37.11 3.41
5689 6487 1.589196 GCCGTCGTATCCAGTCAGC 60.589 63.158 0.00 0.00 0.00 4.26
5691 6489 1.712018 CCGTCGTATCCAGTCAGCGA 61.712 60.000 0.00 0.00 0.00 4.93
5706 6504 4.857251 CGATAGCAACCCTGACCC 57.143 61.111 0.00 0.00 0.00 4.46
5707 6505 2.212327 CGATAGCAACCCTGACCCT 58.788 57.895 0.00 0.00 0.00 4.34
5708 6506 0.105039 CGATAGCAACCCTGACCCTC 59.895 60.000 0.00 0.00 0.00 4.30
5709 6507 0.470341 GATAGCAACCCTGACCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
5710 6508 0.988678 ATAGCAACCCTGACCCTCCC 60.989 60.000 0.00 0.00 0.00 4.30
5711 6509 4.048470 GCAACCCTGACCCTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
5712 6510 3.339093 CAACCCTGACCCTCCCCC 61.339 72.222 0.00 0.00 0.00 5.40
5713 6511 3.552911 AACCCTGACCCTCCCCCT 61.553 66.667 0.00 0.00 0.00 4.79
5714 6512 3.581141 AACCCTGACCCTCCCCCTC 62.581 68.421 0.00 0.00 0.00 4.30
5715 6513 4.825679 CCCTGACCCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
5716 6514 4.825679 CCTGACCCTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
5717 6515 4.825679 CTGACCCTCCCCCTCCCC 62.826 77.778 0.00 0.00 0.00 4.81
5734 6532 1.723288 CCCCCTCTCCATCTCTAACC 58.277 60.000 0.00 0.00 0.00 2.85
5735 6533 1.221781 CCCCCTCTCCATCTCTAACCT 59.778 57.143 0.00 0.00 0.00 3.50
5736 6534 2.604139 CCCCTCTCCATCTCTAACCTC 58.396 57.143 0.00 0.00 0.00 3.85
5737 6535 2.091055 CCCCTCTCCATCTCTAACCTCA 60.091 54.545 0.00 0.00 0.00 3.86
5738 6536 2.962421 CCCTCTCCATCTCTAACCTCAC 59.038 54.545 0.00 0.00 0.00 3.51
5739 6537 3.628513 CCCTCTCCATCTCTAACCTCACA 60.629 52.174 0.00 0.00 0.00 3.58
5740 6538 3.383185 CCTCTCCATCTCTAACCTCACAC 59.617 52.174 0.00 0.00 0.00 3.82
5741 6539 3.366396 TCTCCATCTCTAACCTCACACC 58.634 50.000 0.00 0.00 0.00 4.16
5742 6540 2.432510 CTCCATCTCTAACCTCACACCC 59.567 54.545 0.00 0.00 0.00 4.61
5743 6541 1.486726 CCATCTCTAACCTCACACCCC 59.513 57.143 0.00 0.00 0.00 4.95
5744 6542 2.472029 CATCTCTAACCTCACACCCCT 58.528 52.381 0.00 0.00 0.00 4.79
5745 6543 1.938585 TCTCTAACCTCACACCCCTG 58.061 55.000 0.00 0.00 0.00 4.45
5746 6544 1.149288 TCTCTAACCTCACACCCCTGT 59.851 52.381 0.00 0.00 0.00 4.00
5747 6545 1.978580 CTCTAACCTCACACCCCTGTT 59.021 52.381 0.00 0.00 0.00 3.16
5748 6546 1.975680 TCTAACCTCACACCCCTGTTC 59.024 52.381 0.00 0.00 0.00 3.18
5749 6547 1.978580 CTAACCTCACACCCCTGTTCT 59.021 52.381 0.00 0.00 0.00 3.01
5750 6548 1.222567 AACCTCACACCCCTGTTCTT 58.777 50.000 0.00 0.00 0.00 2.52
5751 6549 1.222567 ACCTCACACCCCTGTTCTTT 58.777 50.000 0.00 0.00 0.00 2.52
5752 6550 1.569072 ACCTCACACCCCTGTTCTTTT 59.431 47.619 0.00 0.00 0.00 2.27
5753 6551 2.024369 ACCTCACACCCCTGTTCTTTTT 60.024 45.455 0.00 0.00 0.00 1.94
5754 6552 2.623416 CCTCACACCCCTGTTCTTTTTC 59.377 50.000 0.00 0.00 0.00 2.29
5755 6553 2.623416 CTCACACCCCTGTTCTTTTTCC 59.377 50.000 0.00 0.00 0.00 3.13
5756 6554 1.686587 CACACCCCTGTTCTTTTTCCC 59.313 52.381 0.00 0.00 0.00 3.97
5757 6555 1.573857 ACACCCCTGTTCTTTTTCCCT 59.426 47.619 0.00 0.00 0.00 4.20
5758 6556 2.239400 CACCCCTGTTCTTTTTCCCTC 58.761 52.381 0.00 0.00 0.00 4.30
5759 6557 1.856920 ACCCCTGTTCTTTTTCCCTCA 59.143 47.619 0.00 0.00 0.00 3.86
5771 6569 7.543359 TCTTTTTCCCTCAAATCACATCAAT 57.457 32.000 0.00 0.00 0.00 2.57
5788 6586 1.339610 CAATGAGCGTAGGGGAGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
5795 6594 2.877335 CGTAGGGGAGAGAGAAAAACG 58.123 52.381 0.00 0.00 0.00 3.60
5827 6626 3.834799 GGCACGCCCTACTACGCT 61.835 66.667 0.00 0.00 0.00 5.07
5828 6627 2.278661 GCACGCCCTACTACGCTC 60.279 66.667 0.00 0.00 0.00 5.03
5829 6628 2.412112 CACGCCCTACTACGCTCC 59.588 66.667 0.00 0.00 0.00 4.70
5830 6629 2.119655 CACGCCCTACTACGCTCCT 61.120 63.158 0.00 0.00 0.00 3.69
5832 6631 1.359475 CGCCCTACTACGCTCCTTC 59.641 63.158 0.00 0.00 0.00 3.46
5833 6632 1.359475 GCCCTACTACGCTCCTTCG 59.641 63.158 0.00 0.00 0.00 3.79
5834 6633 1.359475 CCCTACTACGCTCCTTCGC 59.641 63.158 0.00 0.00 0.00 4.70
5889 6695 2.663520 CGGCAGCACCAACGTGTA 60.664 61.111 0.00 0.00 42.39 2.90
5894 6700 1.597027 AGCACCAACGTGTAGCACC 60.597 57.895 0.00 0.00 42.39 5.01
5902 6708 0.251209 ACGTGTAGCACCCTCTCTCA 60.251 55.000 0.00 0.00 0.00 3.27
5912 6718 0.329261 CCCTCTCTCATTTGCCACCA 59.671 55.000 0.00 0.00 0.00 4.17
5916 6722 1.554617 TCTCTCATTTGCCACCATCGA 59.445 47.619 0.00 0.00 0.00 3.59
5926 6732 0.179192 CCACCATCGATTGCAACACG 60.179 55.000 17.84 17.84 0.00 4.49
5936 6742 0.040514 TTGCAACACGGCTTCATTCG 60.041 50.000 0.00 0.00 34.04 3.34
5983 6789 2.251409 ATGAGATGATCCAACCAGCG 57.749 50.000 0.00 0.00 0.00 5.18
6003 6809 2.349155 CGGTCGCTTTTACTGGAACAAC 60.349 50.000 0.00 0.00 38.70 3.32
6004 6810 2.349155 GGTCGCTTTTACTGGAACAACG 60.349 50.000 0.00 0.00 38.70 4.10
6005 6811 2.540931 GTCGCTTTTACTGGAACAACGA 59.459 45.455 0.00 0.00 38.70 3.85
6006 6812 2.540931 TCGCTTTTACTGGAACAACGAC 59.459 45.455 0.00 0.00 38.70 4.34
6007 6813 2.542595 CGCTTTTACTGGAACAACGACT 59.457 45.455 0.00 0.00 38.70 4.18
6008 6814 3.737266 CGCTTTTACTGGAACAACGACTA 59.263 43.478 0.00 0.00 38.70 2.59
6009 6815 4.143389 CGCTTTTACTGGAACAACGACTAG 60.143 45.833 0.00 0.00 38.70 2.57
6010 6816 4.151867 GCTTTTACTGGAACAACGACTAGG 59.848 45.833 0.00 0.00 38.70 3.02
6012 6818 2.005370 ACTGGAACAACGACTAGGGA 57.995 50.000 0.00 0.00 38.70 4.20
6013 6819 2.537143 ACTGGAACAACGACTAGGGAT 58.463 47.619 0.00 0.00 38.70 3.85
6014 6820 2.233922 ACTGGAACAACGACTAGGGATG 59.766 50.000 0.00 0.00 38.70 3.51
6015 6821 2.233922 CTGGAACAACGACTAGGGATGT 59.766 50.000 0.00 0.00 38.70 3.06
6016 6822 2.635915 TGGAACAACGACTAGGGATGTT 59.364 45.455 10.17 10.17 36.96 2.71
6017 6823 3.000727 GGAACAACGACTAGGGATGTTG 58.999 50.000 13.73 13.66 45.39 3.33
6018 6824 2.094762 ACAACGACTAGGGATGTTGC 57.905 50.000 14.57 0.00 44.13 4.17
6019 6825 1.338769 ACAACGACTAGGGATGTTGCC 60.339 52.381 14.57 0.00 44.13 4.52
6020 6826 0.981183 AACGACTAGGGATGTTGCCA 59.019 50.000 0.00 0.00 0.00 4.92
6021 6827 0.249398 ACGACTAGGGATGTTGCCAC 59.751 55.000 0.00 0.00 0.00 5.01
6022 6828 0.462047 CGACTAGGGATGTTGCCACC 60.462 60.000 0.00 0.00 0.00 4.61
6049 6855 1.065031 CGATTTGCTGAAAACGGCGG 61.065 55.000 13.24 0.00 34.63 6.13
6050 6856 1.344226 GATTTGCTGAAAACGGCGGC 61.344 55.000 13.24 3.92 38.13 6.53
6057 6863 0.889638 TGAAAACGGCGGCCACATTA 60.890 50.000 20.71 0.00 0.00 1.90
6060 6866 3.622060 AACGGCGGCCACATTAGCT 62.622 57.895 20.71 0.00 0.00 3.32
6080 6886 1.838112 AGAACCGGTGACCACGTATA 58.162 50.000 8.52 0.00 0.00 1.47
6105 6912 5.934781 TGGGACTGGCAAAATAAAAATTGT 58.065 33.333 0.00 0.00 0.00 2.71
6108 6915 7.659390 TGGGACTGGCAAAATAAAAATTGTAAG 59.341 33.333 0.00 0.00 0.00 2.34
6133 6940 6.736853 GCATTGTTGCTAAAAGTTACTAGACG 59.263 38.462 0.00 0.00 45.77 4.18
6165 6974 6.827586 ATGCTAGAACCGGTAAATCAAAAA 57.172 33.333 8.00 0.00 0.00 1.94
6184 6993 5.782893 AAAAATGTTGATGTCGAAAGGGA 57.217 34.783 0.00 0.00 0.00 4.20
6185 6994 5.782893 AAAATGTTGATGTCGAAAGGGAA 57.217 34.783 0.00 0.00 0.00 3.97
6186 6995 5.982890 AAATGTTGATGTCGAAAGGGAAT 57.017 34.783 0.00 0.00 0.00 3.01
6187 6996 5.982890 AATGTTGATGTCGAAAGGGAATT 57.017 34.783 0.00 0.00 0.00 2.17
6188 6997 4.764679 TGTTGATGTCGAAAGGGAATTG 57.235 40.909 0.00 0.00 0.00 2.32
6189 6998 3.057596 TGTTGATGTCGAAAGGGAATTGC 60.058 43.478 0.00 0.00 0.00 3.56
6190 6999 3.071874 TGATGTCGAAAGGGAATTGCT 57.928 42.857 0.00 0.00 0.00 3.91
6191 7000 2.749076 TGATGTCGAAAGGGAATTGCTG 59.251 45.455 0.00 0.00 0.00 4.41
6192 7001 0.881118 TGTCGAAAGGGAATTGCTGC 59.119 50.000 0.00 0.00 0.00 5.25
6193 7002 0.881118 GTCGAAAGGGAATTGCTGCA 59.119 50.000 0.00 0.00 0.00 4.41
6194 7003 1.269448 GTCGAAAGGGAATTGCTGCAA 59.731 47.619 18.43 18.43 0.00 4.08
6195 7004 1.269448 TCGAAAGGGAATTGCTGCAAC 59.731 47.619 18.51 5.80 0.00 4.17
6196 7005 1.270550 CGAAAGGGAATTGCTGCAACT 59.729 47.619 18.51 6.64 0.00 3.16
6197 7006 2.680577 GAAAGGGAATTGCTGCAACTG 58.319 47.619 18.51 0.00 0.00 3.16
6198 7007 0.971386 AAGGGAATTGCTGCAACTGG 59.029 50.000 18.51 0.00 0.00 4.00
6199 7008 1.079612 GGGAATTGCTGCAACTGGC 60.080 57.895 18.51 7.10 45.13 4.85
6225 7034 0.932399 AAAAACTGGAACCGTCGACG 59.068 50.000 30.33 30.33 39.44 5.12
6226 7035 0.179103 AAAACTGGAACCGTCGACGT 60.179 50.000 33.49 18.75 37.74 4.34
6227 7036 0.179103 AAACTGGAACCGTCGACGTT 60.179 50.000 33.49 26.30 37.74 3.99
6228 7037 0.872881 AACTGGAACCGTCGACGTTG 60.873 55.000 33.49 22.63 37.74 4.10
6229 7038 2.019951 CTGGAACCGTCGACGTTGG 61.020 63.158 33.49 21.93 37.74 3.77
6230 7039 2.735857 GGAACCGTCGACGTTGGG 60.736 66.667 33.49 21.58 37.74 4.12
6231 7040 2.336088 GAACCGTCGACGTTGGGA 59.664 61.111 33.49 0.00 37.74 4.37
6232 7041 1.300080 GAACCGTCGACGTTGGGAA 60.300 57.895 33.49 0.00 37.74 3.97
6233 7042 1.280206 GAACCGTCGACGTTGGGAAG 61.280 60.000 33.49 19.84 37.74 3.46
6234 7043 3.110178 CCGTCGACGTTGGGAAGC 61.110 66.667 33.49 0.00 37.74 3.86
6235 7044 2.049433 CGTCGACGTTGGGAAGCT 60.049 61.111 29.08 0.00 34.11 3.74
6236 7045 1.210931 CGTCGACGTTGGGAAGCTA 59.789 57.895 29.08 0.00 34.11 3.32
6237 7046 1.069378 CGTCGACGTTGGGAAGCTAC 61.069 60.000 29.08 0.00 34.11 3.58
6238 7047 0.243095 GTCGACGTTGGGAAGCTACT 59.757 55.000 0.00 0.00 0.00 2.57
6239 7048 1.470098 GTCGACGTTGGGAAGCTACTA 59.530 52.381 0.00 0.00 0.00 1.82
6240 7049 1.470098 TCGACGTTGGGAAGCTACTAC 59.530 52.381 2.20 0.00 0.00 2.73
6241 7050 1.468736 CGACGTTGGGAAGCTACTACC 60.469 57.143 0.00 0.00 0.00 3.18
6242 7051 0.529378 ACGTTGGGAAGCTACTACCG 59.471 55.000 0.00 0.00 0.00 4.02
6243 7052 0.813184 CGTTGGGAAGCTACTACCGA 59.187 55.000 0.00 0.00 0.00 4.69
6244 7053 1.468736 CGTTGGGAAGCTACTACCGAC 60.469 57.143 0.00 0.00 34.66 4.79
6245 7054 0.813184 TTGGGAAGCTACTACCGACG 59.187 55.000 0.00 0.00 0.00 5.12
6246 7055 0.035152 TGGGAAGCTACTACCGACGA 60.035 55.000 0.00 0.00 0.00 4.20
6247 7056 1.098050 GGGAAGCTACTACCGACGAA 58.902 55.000 0.00 0.00 0.00 3.85
6248 7057 1.474077 GGGAAGCTACTACCGACGAAA 59.526 52.381 0.00 0.00 0.00 3.46
6249 7058 2.094545 GGGAAGCTACTACCGACGAAAA 60.095 50.000 0.00 0.00 0.00 2.29
6250 7059 3.578688 GGAAGCTACTACCGACGAAAAA 58.421 45.455 0.00 0.00 0.00 1.94
6273 7082 9.558396 AAAAATATCTGAAACCAGCAAATCAAA 57.442 25.926 0.00 0.00 0.00 2.69
6274 7083 9.558396 AAAATATCTGAAACCAGCAAATCAAAA 57.442 25.926 0.00 0.00 0.00 2.44
6275 7084 8.767478 AATATCTGAAACCAGCAAATCAAAAG 57.233 30.769 0.00 0.00 0.00 2.27
6276 7085 5.596836 TCTGAAACCAGCAAATCAAAAGT 57.403 34.783 0.00 0.00 0.00 2.66
6277 7086 5.976458 TCTGAAACCAGCAAATCAAAAGTT 58.024 33.333 0.00 0.00 0.00 2.66
6278 7087 5.811613 TCTGAAACCAGCAAATCAAAAGTTG 59.188 36.000 0.00 0.00 33.67 3.16
6279 7088 4.874966 TGAAACCAGCAAATCAAAAGTTGG 59.125 37.500 0.00 0.00 39.25 3.77
6280 7089 4.486125 AACCAGCAAATCAAAAGTTGGT 57.514 36.364 0.00 0.00 46.78 3.67
6283 7092 3.825143 AGCAAATCAAAAGTTGGTGCT 57.175 38.095 8.15 8.15 39.48 4.40
6284 7093 3.460103 AGCAAATCAAAAGTTGGTGCTG 58.540 40.909 11.40 0.00 39.48 4.41
6285 7094 2.545106 GCAAATCAAAAGTTGGTGCTGG 59.455 45.455 0.00 0.00 33.51 4.85
6286 7095 2.531522 AATCAAAAGTTGGTGCTGGC 57.468 45.000 0.00 0.00 0.00 4.85
6287 7096 0.314935 ATCAAAAGTTGGTGCTGGCG 59.685 50.000 0.00 0.00 0.00 5.69
6288 7097 0.749818 TCAAAAGTTGGTGCTGGCGA 60.750 50.000 0.00 0.00 0.00 5.54
6289 7098 0.318107 CAAAAGTTGGTGCTGGCGAG 60.318 55.000 0.00 0.00 0.00 5.03
6290 7099 1.455383 AAAAGTTGGTGCTGGCGAGG 61.455 55.000 0.00 0.00 0.00 4.63
6291 7100 3.850098 AAGTTGGTGCTGGCGAGGG 62.850 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.507471 CCTTAGGGATGAAGCTCTTGGT 59.493 50.000 0.00 0.00 33.58 3.67
1 2 2.774234 TCCTTAGGGATGAAGCTCTTGG 59.226 50.000 0.00 0.00 36.57 3.61
21 22 1.064463 TGCTGATGGGTTTGGAGGATC 60.064 52.381 0.00 0.00 0.00 3.36
22 23 1.002069 TGCTGATGGGTTTGGAGGAT 58.998 50.000 0.00 0.00 0.00 3.24
23 24 1.002069 ATGCTGATGGGTTTGGAGGA 58.998 50.000 0.00 0.00 0.00 3.71
24 25 2.734755 TATGCTGATGGGTTTGGAGG 57.265 50.000 0.00 0.00 0.00 4.30
25 26 2.954318 CCTTATGCTGATGGGTTTGGAG 59.046 50.000 0.00 0.00 0.00 3.86
26 27 2.358090 CCCTTATGCTGATGGGTTTGGA 60.358 50.000 0.00 0.00 35.13 3.53
27 28 2.034124 CCCTTATGCTGATGGGTTTGG 58.966 52.381 0.00 0.00 35.13 3.28
32 33 1.212688 TGTGACCCTTATGCTGATGGG 59.787 52.381 7.56 7.56 44.89 4.00
33 34 2.715749 TGTGACCCTTATGCTGATGG 57.284 50.000 0.00 0.00 0.00 3.51
34 35 4.201657 TGAATGTGACCCTTATGCTGATG 58.798 43.478 0.00 0.00 0.00 3.07
35 36 4.508551 TGAATGTGACCCTTATGCTGAT 57.491 40.909 0.00 0.00 0.00 2.90
36 37 3.998913 TGAATGTGACCCTTATGCTGA 57.001 42.857 0.00 0.00 0.00 4.26
37 38 3.243301 GCATGAATGTGACCCTTATGCTG 60.243 47.826 0.00 0.00 37.17 4.41
38 39 2.954318 GCATGAATGTGACCCTTATGCT 59.046 45.455 0.00 0.00 37.17 3.79
39 40 2.287188 CGCATGAATGTGACCCTTATGC 60.287 50.000 0.00 0.00 40.61 3.14
40 41 2.291465 CCGCATGAATGTGACCCTTATG 59.709 50.000 5.42 0.00 40.61 1.90
41 42 2.575532 CCGCATGAATGTGACCCTTAT 58.424 47.619 5.42 0.00 40.61 1.73
42 43 2.016604 GCCGCATGAATGTGACCCTTA 61.017 52.381 5.42 0.00 40.61 2.69
43 44 1.315257 GCCGCATGAATGTGACCCTT 61.315 55.000 5.42 0.00 40.61 3.95
44 45 1.750399 GCCGCATGAATGTGACCCT 60.750 57.895 5.42 0.00 40.61 4.34
45 46 1.996786 CTGCCGCATGAATGTGACCC 61.997 60.000 5.42 0.00 40.61 4.46
46 47 1.430632 CTGCCGCATGAATGTGACC 59.569 57.895 5.42 0.00 40.61 4.02
47 48 1.430632 CCTGCCGCATGAATGTGAC 59.569 57.895 5.42 0.00 40.61 3.67
48 49 1.750018 CCCTGCCGCATGAATGTGA 60.750 57.895 5.42 0.00 40.61 3.58
49 50 2.802792 CCCTGCCGCATGAATGTG 59.197 61.111 0.00 0.00 38.00 3.21
50 51 3.142838 GCCCTGCCGCATGAATGT 61.143 61.111 0.00 0.00 0.00 2.71
51 52 4.260355 CGCCCTGCCGCATGAATG 62.260 66.667 0.00 0.00 0.00 2.67
59 60 4.585526 TATTCTCGCGCCCTGCCG 62.586 66.667 0.00 0.00 42.08 5.69
60 61 2.967615 GTATTCTCGCGCCCTGCC 60.968 66.667 0.00 0.00 42.08 4.85
61 62 2.083835 TAGGTATTCTCGCGCCCTGC 62.084 60.000 0.00 0.00 41.47 4.85
62 63 0.039074 CTAGGTATTCTCGCGCCCTG 60.039 60.000 0.00 0.00 0.00 4.45
63 64 0.178998 TCTAGGTATTCTCGCGCCCT 60.179 55.000 0.00 2.59 0.00 5.19
64 65 0.039346 GTCTAGGTATTCTCGCGCCC 60.039 60.000 0.00 0.00 0.00 6.13
65 66 0.953003 AGTCTAGGTATTCTCGCGCC 59.047 55.000 0.00 0.00 0.00 6.53
66 67 1.069091 GGAGTCTAGGTATTCTCGCGC 60.069 57.143 0.00 0.00 0.00 6.86
67 68 2.219458 TGGAGTCTAGGTATTCTCGCG 58.781 52.381 0.00 0.00 0.00 5.87
68 69 2.554893 CCTGGAGTCTAGGTATTCTCGC 59.445 54.545 14.30 0.00 0.00 5.03
69 70 3.822940 ACCTGGAGTCTAGGTATTCTCG 58.177 50.000 25.57 0.00 46.42 4.04
77 78 2.952116 CCTAAGGACCTGGAGTCTAGG 58.048 57.143 20.38 20.38 45.54 3.02
78 79 2.312390 GCCTAAGGACCTGGAGTCTAG 58.688 57.143 0.00 0.00 45.54 2.43
79 80 1.644337 TGCCTAAGGACCTGGAGTCTA 59.356 52.381 0.00 0.00 45.54 2.59
80 81 0.413832 TGCCTAAGGACCTGGAGTCT 59.586 55.000 0.00 0.00 45.54 3.24
81 82 1.208293 CTTGCCTAAGGACCTGGAGTC 59.792 57.143 0.00 0.00 45.51 3.36
82 83 1.280457 CTTGCCTAAGGACCTGGAGT 58.720 55.000 0.00 0.00 0.00 3.85
83 84 0.107459 GCTTGCCTAAGGACCTGGAG 60.107 60.000 0.00 0.00 34.40 3.86
84 85 0.840288 TGCTTGCCTAAGGACCTGGA 60.840 55.000 0.00 0.00 34.40 3.86
85 86 0.257039 ATGCTTGCCTAAGGACCTGG 59.743 55.000 0.00 0.00 37.06 4.45
86 87 3.498774 ATATGCTTGCCTAAGGACCTG 57.501 47.619 0.00 0.00 37.06 4.00
87 88 4.226168 GGATATATGCTTGCCTAAGGACCT 59.774 45.833 0.00 0.00 37.06 3.85
88 89 4.518249 GGATATATGCTTGCCTAAGGACC 58.482 47.826 0.00 0.00 37.06 4.46
89 90 4.081642 TCGGATATATGCTTGCCTAAGGAC 60.082 45.833 2.53 0.00 37.06 3.85
90 91 4.081642 GTCGGATATATGCTTGCCTAAGGA 60.082 45.833 2.53 0.00 38.67 3.36
91 92 4.184629 GTCGGATATATGCTTGCCTAAGG 58.815 47.826 2.53 0.00 34.40 2.69
92 93 4.184629 GGTCGGATATATGCTTGCCTAAG 58.815 47.826 2.53 0.00 36.97 2.18
93 94 3.580895 TGGTCGGATATATGCTTGCCTAA 59.419 43.478 2.53 0.00 0.00 2.69
94 95 3.056107 GTGGTCGGATATATGCTTGCCTA 60.056 47.826 2.53 0.00 0.00 3.93
95 96 1.977854 TGGTCGGATATATGCTTGCCT 59.022 47.619 2.53 0.00 0.00 4.75
96 97 2.076863 GTGGTCGGATATATGCTTGCC 58.923 52.381 2.53 2.81 0.00 4.52
97 98 3.045601 AGTGGTCGGATATATGCTTGC 57.954 47.619 2.53 0.00 0.00 4.01
98 99 4.449068 GTCAAGTGGTCGGATATATGCTTG 59.551 45.833 2.53 0.00 34.97 4.01
99 100 4.503296 GGTCAAGTGGTCGGATATATGCTT 60.503 45.833 2.53 0.00 0.00 3.91
100 101 3.006967 GGTCAAGTGGTCGGATATATGCT 59.993 47.826 2.53 0.00 0.00 3.79
101 102 3.244078 TGGTCAAGTGGTCGGATATATGC 60.244 47.826 0.00 0.00 0.00 3.14
102 103 4.600692 TGGTCAAGTGGTCGGATATATG 57.399 45.455 0.00 0.00 0.00 1.78
103 104 6.127054 CCATATGGTCAAGTGGTCGGATATAT 60.127 42.308 14.09 0.00 0.00 0.86
104 105 5.186992 CCATATGGTCAAGTGGTCGGATATA 59.813 44.000 14.09 0.00 0.00 0.86
105 106 4.020218 CCATATGGTCAAGTGGTCGGATAT 60.020 45.833 14.09 0.00 0.00 1.63
106 107 3.323691 CCATATGGTCAAGTGGTCGGATA 59.676 47.826 14.09 0.00 0.00 2.59
107 108 2.104792 CCATATGGTCAAGTGGTCGGAT 59.895 50.000 14.09 0.00 0.00 4.18
151 152 2.338620 GTGTTTCTTTGGGCCGGC 59.661 61.111 21.18 21.18 0.00 6.13
154 155 2.706890 TCTATCGTGTTTCTTTGGGCC 58.293 47.619 0.00 0.00 0.00 5.80
179 180 0.175760 GGTGCATAGCTCCTTCGACA 59.824 55.000 0.00 0.00 38.91 4.35
180 181 0.530870 GGGTGCATAGCTCCTTCGAC 60.531 60.000 9.61 0.00 41.35 4.20
223 224 7.478721 TCTCTATCCTTCCCATGTATATGACA 58.521 38.462 0.25 0.00 43.97 3.58
238 239 5.105567 TCGACTCTTGTCTCTCTATCCTT 57.894 43.478 0.00 0.00 40.86 3.36
255 256 9.901172 AAGGGAGTAAATTTGTATTTATCGACT 57.099 29.630 0.00 0.00 38.22 4.18
284 285 2.367202 TGGCCGGGAGATTCACCTC 61.367 63.158 2.18 0.00 0.00 3.85
304 306 1.301716 TTGCGTCCAAGACAGAGCC 60.302 57.895 0.00 0.00 32.09 4.70
309 311 2.280524 CGGGTTGCGTCCAAGACA 60.281 61.111 0.00 0.00 32.09 3.41
310 312 2.280592 ACGGGTTGCGTCCAAGAC 60.281 61.111 0.00 0.00 0.00 3.01
330 332 2.028476 CCACGACATTGACCCTCTTACA 60.028 50.000 0.00 0.00 0.00 2.41
340 342 3.459232 GATCCTGATCCACGACATTGA 57.541 47.619 0.00 0.00 31.76 2.57
354 356 6.044682 GCCATTGTCAAATTTTAGGATCCTG 58.955 40.000 25.28 6.54 0.00 3.86
355 357 5.721000 TGCCATTGTCAAATTTTAGGATCCT 59.279 36.000 20.48 20.48 0.00 3.24
357 359 6.703165 GGATGCCATTGTCAAATTTTAGGATC 59.297 38.462 0.00 0.00 0.00 3.36
375 377 1.579140 TTGCATACCTGGGGATGCCA 61.579 55.000 27.91 18.10 46.45 4.92
385 387 1.496429 CTCCTTCCCCATTGCATACCT 59.504 52.381 0.00 0.00 0.00 3.08
386 388 1.479389 CCTCCTTCCCCATTGCATACC 60.479 57.143 0.00 0.00 0.00 2.73
387 389 1.494721 TCCTCCTTCCCCATTGCATAC 59.505 52.381 0.00 0.00 0.00 2.39
409 411 5.815581 TGAGGACAACATTAATTGTAGGCT 58.184 37.500 0.00 0.00 42.89 4.58
430 432 3.007635 CTGCAGATCAACAGCTGATTGA 58.992 45.455 23.35 23.95 45.23 2.57
460 462 4.508461 TTTGTGAGATTGTGCTCATTGG 57.492 40.909 0.00 0.00 45.75 3.16
462 464 5.904941 TGTTTTTGTGAGATTGTGCTCATT 58.095 33.333 0.00 0.00 45.75 2.57
532 534 8.928270 AGATCTAACGTCAACTTAAGTATTGG 57.072 34.615 8.92 2.05 0.00 3.16
539 541 6.425721 CCACCAAAGATCTAACGTCAACTTAA 59.574 38.462 0.00 0.00 0.00 1.85
550 552 3.517901 ACCGATCACCACCAAAGATCTAA 59.482 43.478 0.00 0.00 36.80 2.10
551 553 3.104512 ACCGATCACCACCAAAGATCTA 58.895 45.455 0.00 0.00 36.80 1.98
555 557 1.052617 TGACCGATCACCACCAAAGA 58.947 50.000 0.00 0.00 0.00 2.52
569 571 6.423905 TCAAACTAAGAGAAAGACAATGACCG 59.576 38.462 0.00 0.00 0.00 4.79
574 576 6.429385 CCTGCTCAAACTAAGAGAAAGACAAT 59.571 38.462 0.00 0.00 35.09 2.71
577 579 5.178438 CACCTGCTCAAACTAAGAGAAAGAC 59.822 44.000 0.00 0.00 35.09 3.01
589 591 1.009675 CACACGCACCTGCTCAAAC 60.010 57.895 0.00 0.00 39.32 2.93
598 600 3.777465 TCTTCTATAGTCACACGCACC 57.223 47.619 0.00 0.00 0.00 5.01
653 655 4.227073 TCCATGAGACAATACATCACCCAA 59.773 41.667 0.00 0.00 0.00 4.12
664 666 7.978414 CGCAAGTATATCTATCCATGAGACAAT 59.022 37.037 0.00 0.00 0.00 2.71
665 667 7.315890 CGCAAGTATATCTATCCATGAGACAA 58.684 38.462 0.00 0.00 0.00 3.18
666 668 6.856895 CGCAAGTATATCTATCCATGAGACA 58.143 40.000 0.00 0.00 0.00 3.41
728 730 1.536331 ACGTCTCAACTTCTCTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
729 731 1.535896 CACGTCTCAACTTCTCTCGGA 59.464 52.381 0.00 0.00 0.00 4.55
730 732 1.267261 ACACGTCTCAACTTCTCTCGG 59.733 52.381 0.00 0.00 0.00 4.63
749 751 2.438434 CTGGGATCGGGGTGCAAC 60.438 66.667 0.00 0.00 0.00 4.17
756 758 0.179026 TCTCGTACTCTGGGATCGGG 60.179 60.000 0.00 0.00 0.00 5.14
817 819 3.810941 CCATTCCATATGTGCCAATTTGC 59.189 43.478 1.24 0.00 0.00 3.68
853 855 8.350722 GGAGTTTCAAGATATATGTCTCGTACA 58.649 37.037 2.07 0.00 43.86 2.90
861 863 9.388506 CAAGAAGTGGAGTTTCAAGATATATGT 57.611 33.333 0.00 0.00 0.00 2.29
901 903 0.533085 TTCCACACGTGCCAATTCGA 60.533 50.000 17.22 0.00 0.00 3.71
995 1000 4.713553 TGTATCCAATCCATACATGCGTT 58.286 39.130 0.00 0.00 32.80 4.84
1188 1202 1.877443 GGATACTCACGGCTCTCTCTC 59.123 57.143 0.00 0.00 0.00 3.20
1189 1203 1.213182 TGGATACTCACGGCTCTCTCT 59.787 52.381 0.00 0.00 37.61 3.10
1378 1402 6.966435 AAGGTTGATTAAAAATTGGCATCG 57.034 33.333 0.00 0.00 0.00 3.84
1403 1427 7.774134 TGGACATGCTCTAAAACGTAGTATTA 58.226 34.615 0.00 0.00 45.00 0.98
1405 1429 6.127423 ACTGGACATGCTCTAAAACGTAGTAT 60.127 38.462 0.00 0.00 45.00 2.12
1406 1430 5.184479 ACTGGACATGCTCTAAAACGTAGTA 59.816 40.000 0.00 0.00 45.00 1.82
1408 1432 4.495422 ACTGGACATGCTCTAAAACGTAG 58.505 43.478 0.00 0.00 0.00 3.51
1410 1434 3.402628 ACTGGACATGCTCTAAAACGT 57.597 42.857 0.00 0.00 0.00 3.99
1411 1435 4.749245 AAACTGGACATGCTCTAAAACG 57.251 40.909 0.00 0.00 0.00 3.60
1412 1436 5.009610 TGGAAAACTGGACATGCTCTAAAAC 59.990 40.000 0.00 0.00 0.00 2.43
1413 1437 5.136828 TGGAAAACTGGACATGCTCTAAAA 58.863 37.500 0.00 0.00 0.00 1.52
1414 1438 4.724399 TGGAAAACTGGACATGCTCTAAA 58.276 39.130 0.00 0.00 0.00 1.85
1752 1776 6.029492 TGGGGATTCACTTTGAATGGATAT 57.971 37.500 6.14 0.00 46.20 1.63
1776 1800 8.561536 TCTAGGGGACAATCATAACTGAATTA 57.438 34.615 0.00 0.00 34.37 1.40
1850 1877 6.348621 ACATGTGAATTTTGAAACAAGCAC 57.651 33.333 0.00 0.00 0.00 4.40
1896 1939 2.681848 ACATCTGAATACTTGCTGCTGC 59.318 45.455 8.89 8.89 40.20 5.25
1897 1940 3.937079 TCACATCTGAATACTTGCTGCTG 59.063 43.478 0.00 0.00 0.00 4.41
1932 1975 0.533755 GACAGCTCTTGCCACACTGT 60.534 55.000 0.00 0.00 43.93 3.55
1957 2003 7.631717 AATCTAAGGTATGCTTCCTTTTGAC 57.368 36.000 11.48 0.00 41.86 3.18
1980 2026 9.206690 TGCCTGATTTCCATATGGTAATTAAAA 57.793 29.630 23.01 14.93 35.67 1.52
1981 2027 8.774546 TGCCTGATTTCCATATGGTAATTAAA 57.225 30.769 23.01 15.54 35.67 1.52
1983 2029 8.774546 TTTGCCTGATTTCCATATGGTAATTA 57.225 30.769 23.01 18.89 35.67 1.40
1984 2030 7.673641 TTTGCCTGATTTCCATATGGTAATT 57.326 32.000 23.01 12.34 35.67 1.40
1986 2032 7.327214 GTTTTTGCCTGATTTCCATATGGTAA 58.673 34.615 21.28 18.17 36.34 2.85
1988 2034 5.338300 GGTTTTTGCCTGATTTCCATATGGT 60.338 40.000 21.28 1.96 36.34 3.55
1989 2035 5.118286 GGTTTTTGCCTGATTTCCATATGG 58.882 41.667 16.25 16.25 0.00 2.74
1990 2036 5.732633 TGGTTTTTGCCTGATTTCCATATG 58.267 37.500 0.00 0.00 0.00 1.78
1991 2037 5.627503 GCTGGTTTTTGCCTGATTTCCATAT 60.628 40.000 0.00 0.00 0.00 1.78
2006 2060 1.733526 GTCTGCGGTGCTGGTTTTT 59.266 52.632 0.00 0.00 0.00 1.94
2044 2099 8.792830 TGAAAGTAGATTTTCCATCTAAGGTG 57.207 34.615 0.00 0.00 36.46 4.00
2053 2110 7.343316 TCAAAAGGGTTGAAAGTAGATTTTCCA 59.657 33.333 0.00 0.00 36.46 3.53
2091 2160 3.742369 CGCTTGAATTTCAATTTGGTGCT 59.258 39.130 12.04 0.00 35.59 4.40
2271 2345 1.580059 ATTAGGGGCCGTTCTCAAGA 58.420 50.000 3.09 0.00 0.00 3.02
2295 2369 2.884827 ACGGTAAGCCAATAAGACGTC 58.115 47.619 7.70 7.70 34.09 4.34
2469 2583 4.946784 AGTGTGCATTTAAGACGGAATC 57.053 40.909 0.00 0.00 0.00 2.52
2474 2588 5.636121 TGGTAGTTAGTGTGCATTTAAGACG 59.364 40.000 0.00 0.00 0.00 4.18
2644 2829 8.631797 AGTAGGATCTGATATCATCAATCATCG 58.368 37.037 5.72 0.00 39.11 3.84
2861 3075 3.912496 TTCAACAGATCGTCATCCCAT 57.088 42.857 0.00 0.00 0.00 4.00
2883 3097 8.956426 GTTTTCTCCATTTTACATGAGGTATCA 58.044 33.333 0.00 0.00 40.50 2.15
2893 3107 6.183360 ACAGTGCATGTTTTCTCCATTTTACA 60.183 34.615 0.00 0.00 39.96 2.41
2915 3129 4.021981 TCGAAGATGCATCCATAGGTACAG 60.022 45.833 23.06 3.75 0.00 2.74
2962 3317 2.351253 CGTCATGCCTCTATCTCGAAGG 60.351 54.545 0.00 0.00 0.00 3.46
2967 3322 0.037790 GCCCGTCATGCCTCTATCTC 60.038 60.000 0.00 0.00 0.00 2.75
2982 3337 4.955925 TCTATTTGTACAACATTGCCCG 57.044 40.909 8.07 0.00 0.00 6.13
3069 3449 3.778629 TCCCAGGTTAGATTAGGTTGGTC 59.221 47.826 0.00 0.00 0.00 4.02
3072 3452 6.296803 GGTATTCCCAGGTTAGATTAGGTTG 58.703 44.000 0.00 0.00 0.00 3.77
3089 3469 0.252197 AGCAACGAGTGGGGTATTCC 59.748 55.000 0.00 0.00 0.00 3.01
3099 3479 1.010935 CGATCACTGCAGCAACGAGT 61.011 55.000 15.27 0.00 0.00 4.18
3139 3519 7.701539 ACTATGCCTGTTTCATACAATCAAA 57.298 32.000 0.00 0.00 36.02 2.69
3322 3709 1.736126 CACATGCACACATCTCACCTC 59.264 52.381 0.00 0.00 32.87 3.85
3359 3746 4.682860 CACCACATGCATGAGAAAAAGTTC 59.317 41.667 32.75 0.00 0.00 3.01
3427 3817 3.160269 CCCAAATAATGCATCCTCCCTC 58.840 50.000 0.00 0.00 0.00 4.30
3430 3820 7.721399 CCTATATACCCAAATAATGCATCCTCC 59.279 40.741 0.00 0.00 0.00 4.30
3641 4031 7.643569 TGTATCACATGTTCTGGCAAAATAT 57.356 32.000 0.00 0.00 0.00 1.28
3647 4037 5.981088 AAAATGTATCACATGTTCTGGCA 57.019 34.783 0.00 0.00 37.97 4.92
3648 4038 7.088589 AGTAAAATGTATCACATGTTCTGGC 57.911 36.000 0.00 0.00 37.97 4.85
3649 4039 8.267620 TGAGTAAAATGTATCACATGTTCTGG 57.732 34.615 0.00 0.00 37.97 3.86
3653 4062 9.241919 TGGATTGAGTAAAATGTATCACATGTT 57.758 29.630 0.00 0.71 37.97 2.71
3672 4168 3.505293 TGCATTTGTGTTCGATGGATTGA 59.495 39.130 0.00 0.00 0.00 2.57
3673 4169 3.835779 TGCATTTGTGTTCGATGGATTG 58.164 40.909 0.00 0.00 0.00 2.67
3687 4183 3.142838 CCCGCCTCCCTGCATTTG 61.143 66.667 0.00 0.00 0.00 2.32
3704 4210 3.106407 GTCACGCTCTCGCACCAC 61.106 66.667 0.00 0.00 39.84 4.16
3755 4261 3.006752 GCCTCTCCATGAGATTCGAAGAT 59.993 47.826 3.35 0.00 45.39 2.40
3842 4348 7.434307 GCATACGTACGTATTTATGAGCCATAT 59.566 37.037 32.63 10.92 39.07 1.78
3843 4349 6.748658 GCATACGTACGTATTTATGAGCCATA 59.251 38.462 32.63 9.03 39.07 2.74
3844 4350 5.575606 GCATACGTACGTATTTATGAGCCAT 59.424 40.000 32.63 11.53 39.07 4.40
3846 4352 4.029861 CGCATACGTACGTATTTATGAGCC 59.970 45.833 32.63 16.98 39.07 4.70
3847 4353 4.029861 CCGCATACGTACGTATTTATGAGC 59.970 45.833 32.63 28.17 39.07 4.26
3849 4355 5.107109 ACCGCATACGTACGTATTTATGA 57.893 39.130 32.63 12.40 39.07 2.15
3850 4356 6.505265 GCATACCGCATACGTACGTATTTATG 60.505 42.308 32.63 29.70 39.07 1.90
4261 4799 6.370994 GCATTCAGAACCATGATAGATCGATT 59.629 38.462 0.00 0.00 0.00 3.34
4489 5168 4.038763 TCTGCTTCATGGGTTATACGTAGG 59.961 45.833 0.08 0.00 0.00 3.18
4494 5173 5.428253 TGAGTTCTGCTTCATGGGTTATAC 58.572 41.667 0.00 0.00 0.00 1.47
4495 5174 5.692115 TGAGTTCTGCTTCATGGGTTATA 57.308 39.130 0.00 0.00 0.00 0.98
4496 5175 4.574674 TGAGTTCTGCTTCATGGGTTAT 57.425 40.909 0.00 0.00 0.00 1.89
4605 5299 3.535280 TGTATCGTAGGCTGCATTCAA 57.465 42.857 2.89 0.00 0.00 2.69
4682 5386 9.243637 TCTTTATTGTCAACACATACAAAAAGC 57.756 29.630 0.00 0.00 38.95 3.51
4908 5663 3.267812 ACACCCCAATCTCAGATCATTGT 59.732 43.478 0.00 0.00 0.00 2.71
4948 5708 0.677731 TTCCCTGAAAGCTGCATCCG 60.678 55.000 1.02 0.00 0.00 4.18
4951 5711 1.074405 TCTGTTCCCTGAAAGCTGCAT 59.926 47.619 1.02 0.00 0.00 3.96
5054 5814 0.031917 TCCATGTAGCCGGGACCTTA 60.032 55.000 2.18 0.00 0.00 2.69
5069 5829 2.037144 GGAGAGCCATTTGCATTCCAT 58.963 47.619 0.00 0.00 44.83 3.41
5337 6121 6.034470 CAGAAAAAGTACACGCAACAAAACAT 59.966 34.615 0.00 0.00 0.00 2.71
5339 6123 5.343860 ACAGAAAAAGTACACGCAACAAAAC 59.656 36.000 0.00 0.00 0.00 2.43
5392 6176 3.517296 TTGGTTCACCTGCCTTGATAA 57.483 42.857 0.00 0.00 36.82 1.75
5419 6206 1.370609 CTTGAGCTCATCTGCTGGTG 58.629 55.000 19.04 0.00 44.17 4.17
5462 6249 9.333724 CGGGTCCTTTGTATAATGTAATTAGTT 57.666 33.333 0.00 0.00 42.97 2.24
5482 6278 0.319641 GTCGCTGAATATCCGGGTCC 60.320 60.000 0.00 0.00 0.00 4.46
5485 6281 1.372997 CGGTCGCTGAATATCCGGG 60.373 63.158 0.00 0.00 37.92 5.73
5486 6282 0.663568 GACGGTCGCTGAATATCCGG 60.664 60.000 0.00 0.00 44.54 5.14
5489 6285 2.776312 TCTGACGGTCGCTGAATATC 57.224 50.000 3.34 0.00 0.00 1.63
5493 6289 2.163818 AAAATCTGACGGTCGCTGAA 57.836 45.000 3.34 0.00 0.00 3.02
5495 6291 3.725010 GCTTAAAAATCTGACGGTCGCTG 60.725 47.826 3.34 0.00 0.00 5.18
5496 6292 2.415512 GCTTAAAAATCTGACGGTCGCT 59.584 45.455 3.34 0.00 0.00 4.93
5497 6293 2.158841 TGCTTAAAAATCTGACGGTCGC 59.841 45.455 3.34 0.00 0.00 5.19
5502 6298 7.801547 ATTTGTCATGCTTAAAAATCTGACG 57.198 32.000 0.00 0.00 36.63 4.35
5527 6323 1.927487 TTGCCATCCTCAGCAAACAT 58.073 45.000 0.00 0.00 45.51 2.71
5528 6324 3.435846 TTGCCATCCTCAGCAAACA 57.564 47.368 0.00 0.00 45.51 2.83
5557 6354 5.484173 TGATGGCAAATTTAGTTAGCTCG 57.516 39.130 0.00 0.00 0.00 5.03
5561 6358 7.944061 TGGATGATGATGGCAAATTTAGTTAG 58.056 34.615 0.00 0.00 0.00 2.34
5562 6359 7.894753 TGGATGATGATGGCAAATTTAGTTA 57.105 32.000 0.00 0.00 0.00 2.24
5573 6370 6.278363 GCCATTTATATTGGATGATGATGGC 58.722 40.000 7.65 7.65 46.77 4.40
5574 6371 6.460537 CCGCCATTTATATTGGATGATGATGG 60.461 42.308 6.44 0.00 36.26 3.51
5590 6388 0.390124 CGCCTAGTACCCGCCATTTA 59.610 55.000 0.00 0.00 0.00 1.40
5598 6396 3.909285 GACCGGCGCCTAGTACCC 61.909 72.222 26.68 6.39 0.00 3.69
5612 6410 1.376812 AAAGTTGGGCCGATCGACC 60.377 57.895 18.66 15.57 0.00 4.79
5636 6434 1.810030 GGACGTGCAGGGTTCGATC 60.810 63.158 11.67 0.00 0.00 3.69
5638 6436 2.107041 ATTGGACGTGCAGGGTTCGA 62.107 55.000 10.41 0.00 0.00 3.71
5639 6437 1.234615 AATTGGACGTGCAGGGTTCG 61.235 55.000 10.41 1.30 0.00 3.95
5647 6445 3.181500 GGAAGATACCAAATTGGACGTGC 60.181 47.826 20.25 0.00 40.96 5.34
5649 6447 3.267483 CGGAAGATACCAAATTGGACGT 58.733 45.455 20.25 7.76 40.96 4.34
5651 6449 2.357952 GCCGGAAGATACCAAATTGGAC 59.642 50.000 20.25 9.44 40.96 4.02
5657 6455 0.108041 GACGGCCGGAAGATACCAAA 60.108 55.000 31.76 0.00 0.00 3.28
5670 6468 1.065928 CTGACTGGATACGACGGCC 59.934 63.158 0.00 0.00 42.51 6.13
5678 6476 2.035961 GGTTGCTATCGCTGACTGGATA 59.964 50.000 0.00 0.00 36.97 2.59
5683 6481 0.176680 CAGGGTTGCTATCGCTGACT 59.823 55.000 12.25 0.00 44.77 3.41
5689 6487 0.105039 GAGGGTCAGGGTTGCTATCG 59.895 60.000 0.00 0.00 0.00 2.92
5691 6489 0.988678 GGGAGGGTCAGGGTTGCTAT 60.989 60.000 0.00 0.00 0.00 2.97
5715 6513 1.221781 AGGTTAGAGATGGAGAGGGGG 59.778 57.143 0.00 0.00 0.00 5.40
5716 6514 2.091055 TGAGGTTAGAGATGGAGAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
5717 6515 2.962421 GTGAGGTTAGAGATGGAGAGGG 59.038 54.545 0.00 0.00 0.00 4.30
5718 6516 3.383185 GTGTGAGGTTAGAGATGGAGAGG 59.617 52.174 0.00 0.00 0.00 3.69
5719 6517 3.383185 GGTGTGAGGTTAGAGATGGAGAG 59.617 52.174 0.00 0.00 0.00 3.20
5720 6518 3.366396 GGTGTGAGGTTAGAGATGGAGA 58.634 50.000 0.00 0.00 0.00 3.71
5721 6519 2.432510 GGGTGTGAGGTTAGAGATGGAG 59.567 54.545 0.00 0.00 0.00 3.86
5722 6520 2.467880 GGGTGTGAGGTTAGAGATGGA 58.532 52.381 0.00 0.00 0.00 3.41
5723 6521 1.486726 GGGGTGTGAGGTTAGAGATGG 59.513 57.143 0.00 0.00 0.00 3.51
5724 6522 2.169352 CAGGGGTGTGAGGTTAGAGATG 59.831 54.545 0.00 0.00 0.00 2.90
5725 6523 2.225650 ACAGGGGTGTGAGGTTAGAGAT 60.226 50.000 0.00 0.00 0.00 2.75
5726 6524 1.149288 ACAGGGGTGTGAGGTTAGAGA 59.851 52.381 0.00 0.00 0.00 3.10
5727 6525 1.645710 ACAGGGGTGTGAGGTTAGAG 58.354 55.000 0.00 0.00 0.00 2.43
5728 6526 1.975680 GAACAGGGGTGTGAGGTTAGA 59.024 52.381 0.00 0.00 0.00 2.10
5729 6527 1.978580 AGAACAGGGGTGTGAGGTTAG 59.021 52.381 0.00 0.00 0.00 2.34
5730 6528 2.112279 AGAACAGGGGTGTGAGGTTA 57.888 50.000 0.00 0.00 0.00 2.85
5731 6529 1.222567 AAGAACAGGGGTGTGAGGTT 58.777 50.000 0.00 0.00 0.00 3.50
5732 6530 1.222567 AAAGAACAGGGGTGTGAGGT 58.777 50.000 0.00 0.00 0.00 3.85
5733 6531 2.364972 AAAAGAACAGGGGTGTGAGG 57.635 50.000 0.00 0.00 0.00 3.86
5734 6532 2.623416 GGAAAAAGAACAGGGGTGTGAG 59.377 50.000 0.00 0.00 0.00 3.51
5735 6533 2.661718 GGAAAAAGAACAGGGGTGTGA 58.338 47.619 0.00 0.00 0.00 3.58
5736 6534 1.686587 GGGAAAAAGAACAGGGGTGTG 59.313 52.381 0.00 0.00 0.00 3.82
5737 6535 1.573857 AGGGAAAAAGAACAGGGGTGT 59.426 47.619 0.00 0.00 0.00 4.16
5738 6536 2.239400 GAGGGAAAAAGAACAGGGGTG 58.761 52.381 0.00 0.00 0.00 4.61
5739 6537 1.856920 TGAGGGAAAAAGAACAGGGGT 59.143 47.619 0.00 0.00 0.00 4.95
5740 6538 2.675658 TGAGGGAAAAAGAACAGGGG 57.324 50.000 0.00 0.00 0.00 4.79
5741 6539 4.588528 TGATTTGAGGGAAAAAGAACAGGG 59.411 41.667 0.00 0.00 0.00 4.45
5742 6540 5.068987 TGTGATTTGAGGGAAAAAGAACAGG 59.931 40.000 0.00 0.00 0.00 4.00
5743 6541 6.147864 TGTGATTTGAGGGAAAAAGAACAG 57.852 37.500 0.00 0.00 0.00 3.16
5744 6542 6.323482 TGATGTGATTTGAGGGAAAAAGAACA 59.677 34.615 0.00 0.00 0.00 3.18
5745 6543 6.748132 TGATGTGATTTGAGGGAAAAAGAAC 58.252 36.000 0.00 0.00 0.00 3.01
5746 6544 6.975196 TGATGTGATTTGAGGGAAAAAGAA 57.025 33.333 0.00 0.00 0.00 2.52
5747 6545 6.975196 TTGATGTGATTTGAGGGAAAAAGA 57.025 33.333 0.00 0.00 0.00 2.52
5748 6546 7.380536 TCATTGATGTGATTTGAGGGAAAAAG 58.619 34.615 0.00 0.00 0.00 2.27
5749 6547 7.300556 TCATTGATGTGATTTGAGGGAAAAA 57.699 32.000 0.00 0.00 0.00 1.94
5750 6548 6.572898 GCTCATTGATGTGATTTGAGGGAAAA 60.573 38.462 0.00 0.00 35.47 2.29
5751 6549 5.105635 GCTCATTGATGTGATTTGAGGGAAA 60.106 40.000 0.00 0.00 35.47 3.13
5752 6550 4.400251 GCTCATTGATGTGATTTGAGGGAA 59.600 41.667 0.00 0.00 35.47 3.97
5753 6551 3.949754 GCTCATTGATGTGATTTGAGGGA 59.050 43.478 0.00 0.00 35.47 4.20
5754 6552 3.242969 CGCTCATTGATGTGATTTGAGGG 60.243 47.826 0.00 0.00 39.80 4.30
5755 6553 3.376234 ACGCTCATTGATGTGATTTGAGG 59.624 43.478 0.00 0.00 35.47 3.86
5756 6554 4.611310 ACGCTCATTGATGTGATTTGAG 57.389 40.909 0.00 0.00 37.47 3.02
5757 6555 4.571984 CCTACGCTCATTGATGTGATTTGA 59.428 41.667 2.82 0.00 0.00 2.69
5758 6556 4.260907 CCCTACGCTCATTGATGTGATTTG 60.261 45.833 2.82 0.00 0.00 2.32
5759 6557 3.879295 CCCTACGCTCATTGATGTGATTT 59.121 43.478 2.82 0.00 0.00 2.17
5771 6569 0.624254 TTCTCTCTCCCCTACGCTCA 59.376 55.000 0.00 0.00 0.00 4.26
5788 6586 0.041576 GCGTGGTGACTCCGTTTTTC 60.042 55.000 0.00 0.00 39.52 2.29
5814 6613 1.359475 GAAGGAGCGTAGTAGGGCG 59.641 63.158 0.00 0.00 0.00 6.13
5845 6651 2.584970 TCGACGATGAATGCGGCC 60.585 61.111 0.00 0.00 31.82 6.13
5851 6657 2.278596 CCGCCGTCGACGATGAAT 60.279 61.111 37.65 0.00 43.02 2.57
5883 6689 0.251209 TGAGAGAGGGTGCTACACGT 60.251 55.000 0.00 0.00 34.83 4.49
5885 6691 3.265791 CAAATGAGAGAGGGTGCTACAC 58.734 50.000 0.00 0.00 0.00 2.90
5889 6695 0.034670 GGCAAATGAGAGAGGGTGCT 60.035 55.000 0.00 0.00 32.61 4.40
5894 6700 2.295885 GATGGTGGCAAATGAGAGAGG 58.704 52.381 0.00 0.00 0.00 3.69
5902 6708 1.184431 TGCAATCGATGGTGGCAAAT 58.816 45.000 0.00 0.00 0.00 2.32
5912 6718 0.447801 GAAGCCGTGTTGCAATCGAT 59.552 50.000 22.16 11.52 0.00 3.59
5916 6722 1.401409 CGAATGAAGCCGTGTTGCAAT 60.401 47.619 0.59 0.00 0.00 3.56
5926 6732 1.648467 GGCTGGACACGAATGAAGCC 61.648 60.000 7.28 7.28 40.58 4.35
5936 6742 0.249447 GCACTTTTTGGGCTGGACAC 60.249 55.000 0.00 0.00 43.01 3.67
5965 6771 0.178767 CCGCTGGTTGGATCATCTCA 59.821 55.000 0.00 0.00 0.00 3.27
5983 6789 2.349155 CGTTGTTCCAGTAAAAGCGACC 60.349 50.000 0.00 0.00 0.00 4.79
5989 6795 4.344679 TCCCTAGTCGTTGTTCCAGTAAAA 59.655 41.667 0.00 0.00 0.00 1.52
5993 6799 2.005370 TCCCTAGTCGTTGTTCCAGT 57.995 50.000 0.00 0.00 0.00 4.00
6018 6824 2.436646 AAATCGCCTCGCTGGTGG 60.437 61.111 7.74 0.00 46.01 4.61
6020 6826 3.127533 GCAAATCGCCTCGCTGGT 61.128 61.111 0.00 0.00 38.35 4.00
6021 6827 2.821366 AGCAAATCGCCTCGCTGG 60.821 61.111 0.00 0.00 44.04 4.85
6022 6828 2.402388 CAGCAAATCGCCTCGCTG 59.598 61.111 0.00 0.00 45.17 5.18
6034 6840 3.972276 GGCCGCCGTTTTCAGCAA 61.972 61.111 0.00 0.00 0.00 3.91
6049 6855 1.134491 ACCGGTTCTAGCTAATGTGGC 60.134 52.381 0.00 0.00 0.00 5.01
6050 6856 2.167693 TCACCGGTTCTAGCTAATGTGG 59.832 50.000 2.97 0.00 0.00 4.17
6057 6863 1.874345 CGTGGTCACCGGTTCTAGCT 61.874 60.000 2.97 0.00 0.00 3.32
6060 6866 1.838112 ATACGTGGTCACCGGTTCTA 58.162 50.000 2.97 0.00 0.00 2.10
6080 6886 7.003482 ACAATTTTTATTTTGCCAGTCCCAAT 58.997 30.769 0.00 0.00 0.00 3.16
6165 6974 5.713025 CAATTCCCTTTCGACATCAACATT 58.287 37.500 0.00 0.00 0.00 2.71
6166 6975 4.380867 GCAATTCCCTTTCGACATCAACAT 60.381 41.667 0.00 0.00 0.00 2.71
6167 6976 3.057596 GCAATTCCCTTTCGACATCAACA 60.058 43.478 0.00 0.00 0.00 3.33
6168 6977 3.191371 AGCAATTCCCTTTCGACATCAAC 59.809 43.478 0.00 0.00 0.00 3.18
6169 6978 3.191162 CAGCAATTCCCTTTCGACATCAA 59.809 43.478 0.00 0.00 0.00 2.57
6170 6979 2.749076 CAGCAATTCCCTTTCGACATCA 59.251 45.455 0.00 0.00 0.00 3.07
6171 6980 2.478539 GCAGCAATTCCCTTTCGACATC 60.479 50.000 0.00 0.00 0.00 3.06
6172 6981 1.474077 GCAGCAATTCCCTTTCGACAT 59.526 47.619 0.00 0.00 0.00 3.06
6173 6982 0.881118 GCAGCAATTCCCTTTCGACA 59.119 50.000 0.00 0.00 0.00 4.35
6174 6983 0.881118 TGCAGCAATTCCCTTTCGAC 59.119 50.000 0.00 0.00 0.00 4.20
6175 6984 1.269448 GTTGCAGCAATTCCCTTTCGA 59.731 47.619 11.96 0.00 0.00 3.71
6176 6985 1.270550 AGTTGCAGCAATTCCCTTTCG 59.729 47.619 11.96 0.00 0.00 3.46
6177 6986 2.611224 CCAGTTGCAGCAATTCCCTTTC 60.611 50.000 11.96 0.00 0.00 2.62
6178 6987 1.345415 CCAGTTGCAGCAATTCCCTTT 59.655 47.619 11.96 0.00 0.00 3.11
6179 6988 0.971386 CCAGTTGCAGCAATTCCCTT 59.029 50.000 11.96 0.00 0.00 3.95
6180 6989 1.538687 GCCAGTTGCAGCAATTCCCT 61.539 55.000 11.96 0.05 40.77 4.20
6181 6990 1.079612 GCCAGTTGCAGCAATTCCC 60.080 57.895 11.96 0.00 40.77 3.97
6182 6991 1.444895 CGCCAGTTGCAGCAATTCC 60.445 57.895 11.96 0.00 41.33 3.01
6183 6992 0.039256 TTCGCCAGTTGCAGCAATTC 60.039 50.000 11.96 0.00 41.33 2.17
6184 6993 0.388659 TTTCGCCAGTTGCAGCAATT 59.611 45.000 11.96 3.74 41.33 2.32
6185 6994 0.604578 ATTTCGCCAGTTGCAGCAAT 59.395 45.000 11.96 0.00 41.33 3.56
6186 6995 1.242989 TATTTCGCCAGTTGCAGCAA 58.757 45.000 2.83 2.83 41.33 3.91
6187 6996 1.242989 TTATTTCGCCAGTTGCAGCA 58.757 45.000 2.55 0.00 41.33 4.41
6188 6997 2.346099 TTTATTTCGCCAGTTGCAGC 57.654 45.000 0.00 0.00 41.33 5.25
6206 7015 0.932399 CGTCGACGGTTCCAGTTTTT 59.068 50.000 29.70 0.00 35.37 1.94
6207 7016 0.179103 ACGTCGACGGTTCCAGTTTT 60.179 50.000 37.89 13.44 44.95 2.43
6208 7017 0.179103 AACGTCGACGGTTCCAGTTT 60.179 50.000 37.89 19.84 44.95 2.66
6209 7018 0.872881 CAACGTCGACGGTTCCAGTT 60.873 55.000 37.89 20.56 44.95 3.16
6210 7019 1.299620 CAACGTCGACGGTTCCAGT 60.300 57.895 37.89 15.71 44.95 4.00
6211 7020 2.019951 CCAACGTCGACGGTTCCAG 61.020 63.158 37.89 21.82 44.95 3.86
6212 7021 2.027897 CCAACGTCGACGGTTCCA 59.972 61.111 37.89 0.00 44.95 3.53
6213 7022 2.697992 TTCCCAACGTCGACGGTTCC 62.698 60.000 37.89 0.00 44.95 3.62
6214 7023 1.280206 CTTCCCAACGTCGACGGTTC 61.280 60.000 37.89 0.79 44.95 3.62
6215 7024 1.300388 CTTCCCAACGTCGACGGTT 60.300 57.895 37.89 26.30 44.95 4.44
6216 7025 2.337532 CTTCCCAACGTCGACGGT 59.662 61.111 37.89 32.53 44.95 4.83
6217 7026 2.203972 TAGCTTCCCAACGTCGACGG 62.204 60.000 37.89 22.86 44.95 4.79
6218 7027 1.069378 GTAGCTTCCCAACGTCGACG 61.069 60.000 34.58 34.58 46.33 5.12
6219 7028 0.243095 AGTAGCTTCCCAACGTCGAC 59.757 55.000 5.18 5.18 0.00 4.20
6220 7029 1.470098 GTAGTAGCTTCCCAACGTCGA 59.530 52.381 0.00 0.00 0.00 4.20
6221 7030 1.468736 GGTAGTAGCTTCCCAACGTCG 60.469 57.143 0.00 0.00 0.00 5.12
6222 7031 1.468736 CGGTAGTAGCTTCCCAACGTC 60.469 57.143 0.00 0.00 0.00 4.34
6223 7032 0.529378 CGGTAGTAGCTTCCCAACGT 59.471 55.000 0.00 0.00 0.00 3.99
6224 7033 0.813184 TCGGTAGTAGCTTCCCAACG 59.187 55.000 0.00 0.00 0.00 4.10
6225 7034 1.468736 CGTCGGTAGTAGCTTCCCAAC 60.469 57.143 0.00 0.00 0.00 3.77
6226 7035 0.813184 CGTCGGTAGTAGCTTCCCAA 59.187 55.000 0.00 0.00 0.00 4.12
6227 7036 0.035152 TCGTCGGTAGTAGCTTCCCA 60.035 55.000 0.00 0.00 0.00 4.37
6228 7037 1.098050 TTCGTCGGTAGTAGCTTCCC 58.902 55.000 0.00 0.00 0.00 3.97
6229 7038 2.927553 TTTCGTCGGTAGTAGCTTCC 57.072 50.000 0.00 0.00 0.00 3.46
6247 7056 9.558396 TTTGATTTGCTGGTTTCAGATATTTTT 57.442 25.926 0.00 0.00 43.49 1.94
6248 7057 9.558396 TTTTGATTTGCTGGTTTCAGATATTTT 57.442 25.926 0.00 0.00 43.49 1.82
6249 7058 9.211485 CTTTTGATTTGCTGGTTTCAGATATTT 57.789 29.630 0.00 0.00 43.49 1.40
6250 7059 8.370182 ACTTTTGATTTGCTGGTTTCAGATATT 58.630 29.630 0.00 0.00 43.49 1.28
6251 7060 7.899973 ACTTTTGATTTGCTGGTTTCAGATAT 58.100 30.769 0.00 0.00 43.49 1.63
6252 7061 7.288810 ACTTTTGATTTGCTGGTTTCAGATA 57.711 32.000 0.00 0.00 43.49 1.98
6253 7062 6.165700 ACTTTTGATTTGCTGGTTTCAGAT 57.834 33.333 0.00 0.00 43.49 2.90
6254 7063 5.596836 ACTTTTGATTTGCTGGTTTCAGA 57.403 34.783 0.00 0.00 43.49 3.27
6255 7064 5.006941 CCAACTTTTGATTTGCTGGTTTCAG 59.993 40.000 0.00 0.00 43.64 3.02
6256 7065 4.874966 CCAACTTTTGATTTGCTGGTTTCA 59.125 37.500 0.00 0.00 0.00 2.69
6257 7066 4.875536 ACCAACTTTTGATTTGCTGGTTTC 59.124 37.500 0.00 0.00 31.71 2.78
6258 7067 4.635324 CACCAACTTTTGATTTGCTGGTTT 59.365 37.500 0.00 0.00 33.46 3.27
6259 7068 4.190772 CACCAACTTTTGATTTGCTGGTT 58.809 39.130 0.00 0.00 33.46 3.67
6260 7069 3.795877 CACCAACTTTTGATTTGCTGGT 58.204 40.909 0.00 0.00 36.12 4.00
6261 7070 2.545106 GCACCAACTTTTGATTTGCTGG 59.455 45.455 0.00 0.00 31.89 4.85
6262 7071 3.246699 CAGCACCAACTTTTGATTTGCTG 59.753 43.478 16.15 16.15 44.49 4.41
6263 7072 3.460103 CAGCACCAACTTTTGATTTGCT 58.540 40.909 0.00 0.00 39.81 3.91
6264 7073 2.545106 CCAGCACCAACTTTTGATTTGC 59.455 45.455 0.00 0.00 33.58 3.68
6265 7074 2.545106 GCCAGCACCAACTTTTGATTTG 59.455 45.455 0.00 0.00 0.00 2.32
6266 7075 2.802774 CGCCAGCACCAACTTTTGATTT 60.803 45.455 0.00 0.00 0.00 2.17
6267 7076 1.269726 CGCCAGCACCAACTTTTGATT 60.270 47.619 0.00 0.00 0.00 2.57
6268 7077 0.314935 CGCCAGCACCAACTTTTGAT 59.685 50.000 0.00 0.00 0.00 2.57
6269 7078 0.749818 TCGCCAGCACCAACTTTTGA 60.750 50.000 0.00 0.00 0.00 2.69
6270 7079 0.318107 CTCGCCAGCACCAACTTTTG 60.318 55.000 0.00 0.00 0.00 2.44
6271 7080 1.455383 CCTCGCCAGCACCAACTTTT 61.455 55.000 0.00 0.00 0.00 2.27
6272 7081 1.898574 CCTCGCCAGCACCAACTTT 60.899 57.895 0.00 0.00 0.00 2.66
6273 7082 2.281761 CCTCGCCAGCACCAACTT 60.282 61.111 0.00 0.00 0.00 2.66
6274 7083 4.335647 CCCTCGCCAGCACCAACT 62.336 66.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.