Multiple sequence alignment - TraesCS5D01G499600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G499600 chr5D 100.000 3212 0 0 1 3212 528802411 528805622 0.000000e+00 5932
1 TraesCS5D01G499600 chr5D 87.671 1825 173 24 307 2103 528762184 528763984 0.000000e+00 2076
2 TraesCS5D01G499600 chr5D 85.269 1412 186 14 829 2231 528747799 528749197 0.000000e+00 1435
3 TraesCS5D01G499600 chr5D 92.916 367 22 2 307 670 528745747 528746112 6.100000e-147 531
4 TraesCS5D01G499600 chr5B 87.139 1384 160 9 830 2200 665958667 665960045 0.000000e+00 1554
5 TraesCS5D01G499600 chr5B 86.724 1288 136 18 830 2103 665939070 665940336 0.000000e+00 1399
6 TraesCS5D01G499600 chr5B 90.769 715 28 6 14 697 665957864 665958571 0.000000e+00 920
7 TraesCS5D01G499600 chr5B 87.654 405 36 2 307 697 665938545 665938949 2.920000e-125 459
8 TraesCS5D01G499600 chr5B 79.775 356 63 5 2865 3212 665940677 665941031 1.910000e-62 250
9 TraesCS5D01G499600 chr5B 84.496 129 16 2 2724 2848 503868884 503869012 1.210000e-24 124
10 TraesCS5D01G499600 chr6B 83.149 1264 193 16 847 2101 106509354 106510606 0.000000e+00 1136
11 TraesCS5D01G499600 chrUn 82.512 1258 200 13 853 2101 97782359 97783605 0.000000e+00 1086
12 TraesCS5D01G499600 chrUn 73.449 403 55 25 2089 2478 97783705 97784068 1.580000e-18 104
13 TraesCS5D01G499600 chr1D 84.410 898 132 6 1189 2079 476570408 476569512 0.000000e+00 876
14 TraesCS5D01G499600 chr1D 87.755 147 18 0 3031 3177 476568736 476568590 4.260000e-39 172
15 TraesCS5D01G499600 chr1B 83.519 898 140 6 1189 2079 662843672 662842776 0.000000e+00 832
16 TraesCS5D01G499600 chr4A 82.589 224 32 5 2632 2848 674593845 674594068 1.180000e-44 191
17 TraesCS5D01G499600 chr1A 81.633 196 36 0 1182 1377 584840466 584840661 2.560000e-36 163
18 TraesCS5D01G499600 chr2B 79.167 240 32 8 2627 2848 353581071 353581310 2.000000e-32 150
19 TraesCS5D01G499600 chr2B 87.402 127 13 2 2725 2848 737765187 737765061 3.340000e-30 143
20 TraesCS5D01G499600 chr2D 85.294 136 16 3 2716 2848 295161001 295160867 1.550000e-28 137
21 TraesCS5D01G499600 chr2A 78.189 243 31 10 2627 2848 362439281 362439040 5.590000e-28 135
22 TraesCS5D01G499600 chr4B 78.151 238 31 7 2632 2848 70104411 70104648 7.230000e-27 132
23 TraesCS5D01G499600 chr4B 84.252 127 16 3 2725 2848 452717091 452716966 1.570000e-23 121
24 TraesCS5D01G499600 chr5A 76.959 217 25 14 2643 2836 555210948 555210734 2.040000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G499600 chr5D 528802411 528805622 3211 False 5932.000000 5932 100.000000 1 3212 1 chr5D.!!$F2 3211
1 TraesCS5D01G499600 chr5D 528762184 528763984 1800 False 2076.000000 2076 87.671000 307 2103 1 chr5D.!!$F1 1796
2 TraesCS5D01G499600 chr5D 528745747 528749197 3450 False 983.000000 1435 89.092500 307 2231 2 chr5D.!!$F3 1924
3 TraesCS5D01G499600 chr5B 665957864 665960045 2181 False 1237.000000 1554 88.954000 14 2200 2 chr5B.!!$F3 2186
4 TraesCS5D01G499600 chr5B 665938545 665941031 2486 False 702.666667 1399 84.717667 307 3212 3 chr5B.!!$F2 2905
5 TraesCS5D01G499600 chr6B 106509354 106510606 1252 False 1136.000000 1136 83.149000 847 2101 1 chr6B.!!$F1 1254
6 TraesCS5D01G499600 chrUn 97782359 97784068 1709 False 595.000000 1086 77.980500 853 2478 2 chrUn.!!$F1 1625
7 TraesCS5D01G499600 chr1D 476568590 476570408 1818 True 524.000000 876 86.082500 1189 3177 2 chr1D.!!$R1 1988
8 TraesCS5D01G499600 chr1B 662842776 662843672 896 True 832.000000 832 83.519000 1189 2079 1 chr1B.!!$R1 890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
139 140 0.529992 CCGGCGAAGGAATGTAGGAC 60.530 60.0 9.30 0.00 0.0 3.85 F
2003 3611 0.109342 CTTGGACTTGTGGAGCCACT 59.891 55.0 19.47 0.45 46.3 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 3690 0.105760 TCACCCATGGCAACTTTGGT 60.106 50.0 6.09 0.0 40.01 3.67 R
2845 4693 0.550147 AGGTGGGCATAGTGGGAAGT 60.550 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 1.595382 GATGGATGACCGGCGAAGG 60.595 63.158 9.30 0.00 39.42 3.46
139 140 0.529992 CCGGCGAAGGAATGTAGGAC 60.530 60.000 9.30 0.00 0.00 3.85
144 145 2.223735 GCGAAGGAATGTAGGACGATGA 60.224 50.000 0.00 0.00 0.00 2.92
160 161 1.139853 GATGAGAAGACCGAGGGCAAT 59.860 52.381 0.00 0.00 0.00 3.56
192 193 3.280295 ACTCACGACGATTCTGGTCTAT 58.720 45.455 0.00 0.00 32.24 1.98
193 194 4.449131 ACTCACGACGATTCTGGTCTATA 58.551 43.478 0.00 0.00 32.24 1.31
194 195 4.512198 ACTCACGACGATTCTGGTCTATAG 59.488 45.833 0.00 0.00 32.24 1.31
195 196 3.813724 TCACGACGATTCTGGTCTATAGG 59.186 47.826 0.00 0.00 32.24 2.57
196 197 3.564644 CACGACGATTCTGGTCTATAGGT 59.435 47.826 0.00 0.00 32.24 3.08
205 206 3.132289 TCTGGTCTATAGGTTTGCTTCCG 59.868 47.826 0.00 0.00 0.00 4.30
212 213 0.755327 AGGTTTGCTTCCGTTGGCTT 60.755 50.000 0.00 0.00 0.00 4.35
233 234 1.001974 AGCACAGCCGTCAAATACTCA 59.998 47.619 0.00 0.00 0.00 3.41
256 257 1.433837 GCGTTGACGGTTGAACTGGT 61.434 55.000 9.23 0.63 40.23 4.00
258 259 0.661020 GTTGACGGTTGAACTGGTGG 59.339 55.000 9.23 0.00 0.00 4.61
259 260 1.098712 TTGACGGTTGAACTGGTGGC 61.099 55.000 9.23 0.00 0.00 5.01
260 261 2.203294 ACGGTTGAACTGGTGGCC 60.203 61.111 9.23 0.00 0.00 5.36
271 272 2.357593 CTGGTGGCCCAACCTGAACT 62.358 60.000 13.17 0.00 41.27 3.01
587 616 4.941263 AGGACGCTATGTATGAGATCTCTC 59.059 45.833 22.95 13.57 43.15 3.20
655 694 5.091261 AGGTATGTGACTGAACCAAGATC 57.909 43.478 4.81 0.00 34.29 2.75
663 702 6.320926 TGTGACTGAACCAAGATCAAATTTGA 59.679 34.615 22.52 22.52 42.14 2.69
682 725 2.368548 TGACCAGTGCTTGAGCTCTAAA 59.631 45.455 16.19 0.28 42.25 1.85
692 735 2.991250 TGAGCTCTAAATGTTCTGGGC 58.009 47.619 16.19 0.00 0.00 5.36
697 740 2.941720 CTCTAAATGTTCTGGGCAGCTC 59.058 50.000 0.00 0.00 0.00 4.09
710 753 2.019984 GGCAGCTCTTGTTGGAATAGG 58.980 52.381 0.00 0.00 0.00 2.57
714 757 4.095036 GCAGCTCTTGTTGGAATAGGTAAC 59.905 45.833 0.00 0.00 0.00 2.50
717 770 6.375455 CAGCTCTTGTTGGAATAGGTAACAAT 59.625 38.462 0.00 0.00 41.70 2.71
718 771 6.948309 AGCTCTTGTTGGAATAGGTAACAATT 59.052 34.615 0.00 0.00 41.70 2.32
720 773 8.088365 GCTCTTGTTGGAATAGGTAACAATTTT 58.912 33.333 0.00 0.00 41.70 1.82
721 774 9.981114 CTCTTGTTGGAATAGGTAACAATTTTT 57.019 29.630 0.00 0.00 41.70 1.94
795 852 1.893137 ACGTCATGCTCACAGTTCCTA 59.107 47.619 0.00 0.00 0.00 2.94
901 2499 8.429641 TGTATTATCTTATTCCCAGAACTGTCC 58.570 37.037 1.18 0.00 0.00 4.02
903 2501 5.983333 ATCTTATTCCCAGAACTGTCCAT 57.017 39.130 1.18 0.00 0.00 3.41
947 2545 9.478019 GAACATCAAAGTGTACGATAAAATCAG 57.522 33.333 0.00 0.00 0.00 2.90
980 2578 1.975660 TTGCAGTGGTACCCTCAAAC 58.024 50.000 10.07 0.00 0.00 2.93
981 2579 0.840617 TGCAGTGGTACCCTCAAACA 59.159 50.000 10.07 0.00 0.00 2.83
983 2581 1.607148 GCAGTGGTACCCTCAAACAAC 59.393 52.381 10.07 0.00 0.00 3.32
990 2588 3.002965 GGTACCCTCAAACAACTGTTTCG 59.997 47.826 0.00 2.54 45.54 3.46
1020 2618 7.322664 TGAAAATGGCCAATAAGATGAAGAAC 58.677 34.615 10.96 0.00 0.00 3.01
1082 2680 5.591099 TCCTTTCACTTTCATGCAAGAAAC 58.409 37.500 12.82 0.00 34.11 2.78
1105 2703 2.259818 CTCGCGTGCAGGAAGTCT 59.740 61.111 11.29 0.00 0.00 3.24
1145 2743 3.414700 GGCTGTGACGGAAGCACG 61.415 66.667 0.00 0.00 41.36 5.34
1191 2789 2.489329 ACTGGAAATCATGGCTCGTTTG 59.511 45.455 0.00 0.00 0.00 2.93
1287 2885 5.572896 GGCACAATTAGTTTTCAAGGATTCG 59.427 40.000 0.00 0.00 0.00 3.34
1288 2886 5.572896 GCACAATTAGTTTTCAAGGATTCGG 59.427 40.000 0.00 0.00 0.00 4.30
1393 2992 7.712639 CACAACTATCCAATAGCAATAGTCAGT 59.287 37.037 0.00 0.00 35.66 3.41
1433 3032 7.441890 TGATAGAAAATAACCTTCAAACGCA 57.558 32.000 0.00 0.00 0.00 5.24
1442 3041 1.676006 CCTTCAAACGCACCTTTCTGT 59.324 47.619 0.00 0.00 0.00 3.41
1449 3048 3.349488 ACGCACCTTTCTGTTAAAAGC 57.651 42.857 0.00 0.00 35.37 3.51
1488 3087 2.660064 CCTGTGGGAGAGGGAACCG 61.660 68.421 0.00 0.00 46.01 4.44
1542 3141 1.351017 CTGGGTGAAGGGAGCAAAGTA 59.649 52.381 0.00 0.00 0.00 2.24
1581 3180 6.018016 CCACACGAGATGAATATATTGCACAA 60.018 38.462 1.78 0.00 0.00 3.33
1688 3293 0.172352 GCTAGAACTGACAGAGCGCT 59.828 55.000 11.27 11.27 0.00 5.92
1727 3332 2.223782 TGGACATTGCAAAGAAGTGTGC 60.224 45.455 8.96 11.32 41.29 4.57
1838 3446 1.294659 GACGTGCTTGCCTCAGAAGG 61.295 60.000 0.00 0.00 46.44 3.46
1891 3499 5.298197 GCTACTAAGCTATCGCAGTATGA 57.702 43.478 0.00 0.00 45.85 2.15
1932 3540 3.861689 GCTTTGGCTATTGTGCAATCTTC 59.138 43.478 0.18 0.00 35.22 2.87
1946 3554 3.321968 GCAATCTTCCCAAAAGGTCACTT 59.678 43.478 0.00 0.00 38.99 3.16
1961 3569 9.794719 AAAAGGTCACTTTATAGCTAAAGAAGT 57.205 29.630 14.52 12.97 45.85 3.01
1995 3603 2.507484 TGGATTGCTCTTGGACTTGTG 58.493 47.619 0.00 0.00 0.00 3.33
2003 3611 0.109342 CTTGGACTTGTGGAGCCACT 59.891 55.000 19.47 0.45 46.30 4.00
2004 3612 0.179020 TTGGACTTGTGGAGCCACTG 60.179 55.000 19.47 14.30 46.30 3.66
2008 3622 1.002868 CTTGTGGAGCCACTGAGGG 60.003 63.158 19.47 3.19 46.30 4.30
2023 3637 5.163258 CCACTGAGGGCACTCTCTAATAAAT 60.163 44.000 18.70 0.00 44.29 1.40
2076 3690 2.158475 AGGCATGTCCTTCCTTGAACAA 60.158 45.455 0.00 0.00 44.75 2.83
2084 3701 4.159693 GTCCTTCCTTGAACAACCAAAGTT 59.840 41.667 0.00 0.00 36.33 2.66
2146 3886 7.873719 TCAACTGTTTTCTTCAACTTATGGA 57.126 32.000 0.00 0.00 0.00 3.41
2174 3914 5.296283 GCAGATCATATGGTGCATATTCTCC 59.704 44.000 16.23 0.00 35.18 3.71
2200 3962 3.574354 ATTTTGCCAACACCACCATTT 57.426 38.095 0.00 0.00 0.00 2.32
2207 3969 2.559440 CAACACCACCATTTTGTTGGG 58.441 47.619 5.90 0.00 44.18 4.12
2244 4032 4.207891 TGGAGCTCAACATACTTCTTCC 57.792 45.455 17.19 0.00 0.00 3.46
2250 4038 4.691216 GCTCAACATACTTCTTCCGTTCTT 59.309 41.667 0.00 0.00 0.00 2.52
2258 4046 9.159364 ACATACTTCTTCCGTTCTTAAATAACC 57.841 33.333 0.00 0.00 0.00 2.85
2261 4049 6.930722 ACTTCTTCCGTTCTTAAATAACCGAA 59.069 34.615 0.00 0.00 0.00 4.30
2267 4055 8.271312 TCCGTTCTTAAATAACCGAAATTCAT 57.729 30.769 0.00 0.00 0.00 2.57
2268 4056 9.381033 TCCGTTCTTAAATAACCGAAATTCATA 57.619 29.630 0.00 0.00 0.00 2.15
2302 4090 9.367444 ACATCTTAATTAGGTAGAACTTTGACG 57.633 33.333 0.00 0.00 0.00 4.35
2307 4095 3.870633 AGGTAGAACTTTGACGCCTAG 57.129 47.619 0.00 0.00 0.00 3.02
2319 4107 6.762661 ACTTTGACGCCTAGTGTTTTACTAAA 59.237 34.615 0.00 0.00 41.20 1.85
2320 4108 7.443272 ACTTTGACGCCTAGTGTTTTACTAAAT 59.557 33.333 0.00 0.00 41.20 1.40
2321 4109 7.733402 TTGACGCCTAGTGTTTTACTAAATT 57.267 32.000 0.00 0.00 41.20 1.82
2322 4110 7.733402 TGACGCCTAGTGTTTTACTAAATTT 57.267 32.000 0.00 0.00 41.20 1.82
2323 4111 8.830201 TGACGCCTAGTGTTTTACTAAATTTA 57.170 30.769 0.00 0.00 41.20 1.40
2324 4112 8.711457 TGACGCCTAGTGTTTTACTAAATTTAC 58.289 33.333 0.00 0.00 41.20 2.01
2325 4113 8.032952 ACGCCTAGTGTTTTACTAAATTTACC 57.967 34.615 0.00 0.00 41.20 2.85
2326 4114 7.879677 ACGCCTAGTGTTTTACTAAATTTACCT 59.120 33.333 0.00 0.00 41.20 3.08
2327 4115 8.724229 CGCCTAGTGTTTTACTAAATTTACCTT 58.276 33.333 0.00 0.00 41.20 3.50
2347 4150 6.944096 ACCTTTAGTAGCCGATTAAGAACTT 58.056 36.000 0.00 0.00 0.00 2.66
2349 4152 7.333672 ACCTTTAGTAGCCGATTAAGAACTTTG 59.666 37.037 0.00 0.00 0.00 2.77
2430 4236 9.554395 TTCATGTATTTCAAGACAGACTACAAA 57.446 29.630 0.00 0.00 33.15 2.83
2444 4250 6.151985 ACAGACTACAAACCAAATGTTCACAA 59.848 34.615 0.00 0.00 35.67 3.33
2448 4254 4.754322 ACAAACCAAATGTTCACAACCTC 58.246 39.130 0.00 0.00 35.67 3.85
2449 4255 4.221703 ACAAACCAAATGTTCACAACCTCA 59.778 37.500 0.00 0.00 35.67 3.86
2450 4256 4.385358 AACCAAATGTTCACAACCTCAC 57.615 40.909 0.00 0.00 28.45 3.51
2471 4277 2.680352 TCAGTGAGGGCCCGACTC 60.680 66.667 22.95 18.01 35.55 3.36
2479 4285 4.021925 GGCCCGACTCTGCCTTGT 62.022 66.667 0.00 0.00 44.46 3.16
2493 4324 1.892209 CCTTGTTGGCTCCGTAGTTT 58.108 50.000 0.00 0.00 0.00 2.66
2497 4328 3.587797 TGTTGGCTCCGTAGTTTAGAG 57.412 47.619 0.00 0.00 0.00 2.43
2501 4332 2.901839 TGGCTCCGTAGTTTAGAGGTTT 59.098 45.455 0.00 0.00 0.00 3.27
2503 4334 4.082026 TGGCTCCGTAGTTTAGAGGTTTAC 60.082 45.833 0.00 0.00 0.00 2.01
2504 4335 4.082026 GGCTCCGTAGTTTAGAGGTTTACA 60.082 45.833 0.00 0.00 0.00 2.41
2517 4348 2.844348 AGGTTTACATGTCAGGTAGGGG 59.156 50.000 0.00 0.00 0.00 4.79
2518 4349 2.092592 GGTTTACATGTCAGGTAGGGGG 60.093 54.545 0.00 0.00 0.00 5.40
2521 4352 0.983378 ACATGTCAGGTAGGGGGCTC 60.983 60.000 0.00 0.00 0.00 4.70
2522 4353 0.982852 CATGTCAGGTAGGGGGCTCA 60.983 60.000 0.00 0.00 0.00 4.26
2529 4360 2.982488 CAGGTAGGGGGCTCAAGATTAT 59.018 50.000 0.00 0.00 0.00 1.28
2532 4363 2.938956 AGGGGGCTCAAGATTATTCG 57.061 50.000 0.00 0.00 0.00 3.34
2533 4364 2.127708 AGGGGGCTCAAGATTATTCGT 58.872 47.619 0.00 0.00 0.00 3.85
2549 4380 9.626045 AGATTATTCGTTTTGTTGAGAAAATCC 57.374 29.630 0.00 0.00 0.00 3.01
2555 4386 6.972328 TCGTTTTGTTGAGAAAATCCAGAAAG 59.028 34.615 0.00 0.00 0.00 2.62
2559 4390 6.017400 TGTTGAGAAAATCCAGAAAGCATC 57.983 37.500 0.00 0.00 0.00 3.91
2561 4392 4.326826 TGAGAAAATCCAGAAAGCATCGT 58.673 39.130 0.00 0.00 0.00 3.73
2562 4393 4.154737 TGAGAAAATCCAGAAAGCATCGTG 59.845 41.667 0.00 0.00 0.00 4.35
2566 4397 1.808411 TCCAGAAAGCATCGTGAACC 58.192 50.000 0.00 0.00 0.00 3.62
2568 4399 2.086869 CCAGAAAGCATCGTGAACCAT 58.913 47.619 0.00 0.00 0.00 3.55
2570 4401 2.743664 CAGAAAGCATCGTGAACCATCA 59.256 45.455 0.00 0.00 0.00 3.07
2572 4403 3.376234 AGAAAGCATCGTGAACCATCATG 59.624 43.478 0.00 0.00 42.82 3.07
2573 4404 1.019673 AGCATCGTGAACCATCATGC 58.980 50.000 0.00 0.00 41.50 4.06
2581 4429 0.864455 GAACCATCATGCGCTAGAGC 59.136 55.000 12.00 12.00 37.78 4.09
2590 4438 1.656652 TGCGCTAGAGCAGAAAATCC 58.343 50.000 17.82 0.00 42.92 3.01
2591 4439 1.066215 TGCGCTAGAGCAGAAAATCCA 60.066 47.619 17.82 0.00 42.92 3.41
2595 4443 4.797604 GCGCTAGAGCAGAAAATCCATCTA 60.798 45.833 14.09 0.00 42.21 1.98
2616 4464 2.777459 TCTACTCCCTCCATTCTCCC 57.223 55.000 0.00 0.00 0.00 4.30
2622 4470 6.978484 TCTACTCCCTCCATTCTCCCTATATA 59.022 42.308 0.00 0.00 0.00 0.86
2624 4472 7.074807 ACTCCCTCCATTCTCCCTATATATT 57.925 40.000 0.00 0.00 0.00 1.28
2625 4473 6.905776 ACTCCCTCCATTCTCCCTATATATTG 59.094 42.308 0.00 0.00 0.00 1.90
2626 4474 6.212773 TCCCTCCATTCTCCCTATATATTGG 58.787 44.000 6.25 6.25 0.00 3.16
2627 4475 5.370880 CCCTCCATTCTCCCTATATATTGGG 59.629 48.000 22.37 22.37 43.16 4.12
2628 4476 5.163152 CCTCCATTCTCCCTATATATTGGGC 60.163 48.000 23.26 0.00 41.80 5.36
2629 4477 4.726825 TCCATTCTCCCTATATATTGGGCC 59.273 45.833 23.26 0.00 41.80 5.80
2630 4478 4.444876 CCATTCTCCCTATATATTGGGCCG 60.445 50.000 23.26 17.12 41.80 6.13
2631 4479 2.759355 TCTCCCTATATATTGGGCCGG 58.241 52.381 23.26 16.21 41.80 6.13
2632 4480 1.141053 CTCCCTATATATTGGGCCGGC 59.859 57.143 23.26 21.18 41.80 6.13
2633 4481 0.182775 CCCTATATATTGGGCCGGCC 59.817 60.000 38.57 38.57 36.09 6.13
2634 4482 0.916086 CCTATATATTGGGCCGGCCA 59.084 55.000 44.46 28.13 37.98 5.36
2635 4483 1.494721 CCTATATATTGGGCCGGCCAT 59.505 52.381 44.46 32.32 37.98 4.40
2636 4484 2.708861 CCTATATATTGGGCCGGCCATA 59.291 50.000 44.46 33.32 37.98 2.74
2637 4485 3.244561 CCTATATATTGGGCCGGCCATAG 60.245 52.174 44.46 35.32 37.98 2.23
2638 4486 1.663911 TATATTGGGCCGGCCATAGT 58.336 50.000 44.46 30.32 37.98 2.12
2639 4487 0.038166 ATATTGGGCCGGCCATAGTG 59.962 55.000 44.46 0.00 37.98 2.74
2640 4488 2.063015 TATTGGGCCGGCCATAGTGG 62.063 60.000 44.46 0.00 41.55 4.00
2664 4512 7.001695 GCAGTAACTTAGCCAGTAACATAAC 57.998 40.000 0.00 0.00 32.94 1.89
2665 4513 6.237755 GCAGTAACTTAGCCAGTAACATAACG 60.238 42.308 0.00 0.00 32.94 3.18
2666 4514 5.809051 AGTAACTTAGCCAGTAACATAACGC 59.191 40.000 0.00 0.00 32.94 4.84
2667 4515 4.196626 ACTTAGCCAGTAACATAACGCA 57.803 40.909 0.00 0.00 31.97 5.24
2668 4516 3.930848 ACTTAGCCAGTAACATAACGCAC 59.069 43.478 0.00 0.00 31.97 5.34
2669 4517 1.734163 AGCCAGTAACATAACGCACC 58.266 50.000 0.00 0.00 0.00 5.01
2670 4518 0.730840 GCCAGTAACATAACGCACCC 59.269 55.000 0.00 0.00 0.00 4.61
2671 4519 1.375551 CCAGTAACATAACGCACCCC 58.624 55.000 0.00 0.00 0.00 4.95
2672 4520 1.339247 CCAGTAACATAACGCACCCCA 60.339 52.381 0.00 0.00 0.00 4.96
2673 4521 2.428491 CAGTAACATAACGCACCCCAA 58.572 47.619 0.00 0.00 0.00 4.12
2674 4522 2.418628 CAGTAACATAACGCACCCCAAG 59.581 50.000 0.00 0.00 0.00 3.61
2675 4523 1.741145 GTAACATAACGCACCCCAAGG 59.259 52.381 0.00 0.00 40.04 3.61
2692 4540 7.360113 CCCCAAGGTAAATTTGCTTATATGT 57.640 36.000 6.23 0.00 0.00 2.29
2693 4541 7.433680 CCCCAAGGTAAATTTGCTTATATGTC 58.566 38.462 6.23 0.00 0.00 3.06
2694 4542 7.069331 CCCCAAGGTAAATTTGCTTATATGTCA 59.931 37.037 6.23 0.00 0.00 3.58
2695 4543 8.474025 CCCAAGGTAAATTTGCTTATATGTCAA 58.526 33.333 6.23 0.00 0.00 3.18
2696 4544 9.520204 CCAAGGTAAATTTGCTTATATGTCAAG 57.480 33.333 6.23 0.00 0.00 3.02
2697 4545 9.520204 CAAGGTAAATTTGCTTATATGTCAAGG 57.480 33.333 6.23 0.00 0.00 3.61
2698 4546 9.474313 AAGGTAAATTTGCTTATATGTCAAGGA 57.526 29.630 6.23 0.00 0.00 3.36
2699 4547 9.125026 AGGTAAATTTGCTTATATGTCAAGGAG 57.875 33.333 6.23 0.00 0.00 3.69
2700 4548 8.903820 GGTAAATTTGCTTATATGTCAAGGAGT 58.096 33.333 6.23 0.00 0.00 3.85
2706 4554 9.679661 TTTGCTTATATGTCAAGGAGTTAATGA 57.320 29.630 0.00 0.00 0.00 2.57
2707 4555 8.893219 TGCTTATATGTCAAGGAGTTAATGAG 57.107 34.615 0.00 0.00 0.00 2.90
2708 4556 8.704668 TGCTTATATGTCAAGGAGTTAATGAGA 58.295 33.333 0.00 0.00 0.00 3.27
2709 4557 9.547753 GCTTATATGTCAAGGAGTTAATGAGAA 57.452 33.333 0.00 0.00 0.00 2.87
2713 4561 6.918067 TGTCAAGGAGTTAATGAGAAGAGA 57.082 37.500 0.00 0.00 0.00 3.10
2714 4562 6.929625 TGTCAAGGAGTTAATGAGAAGAGAG 58.070 40.000 0.00 0.00 0.00 3.20
2715 4563 6.721668 TGTCAAGGAGTTAATGAGAAGAGAGA 59.278 38.462 0.00 0.00 0.00 3.10
2716 4564 7.398618 TGTCAAGGAGTTAATGAGAAGAGAGAT 59.601 37.037 0.00 0.00 0.00 2.75
2717 4565 7.706179 GTCAAGGAGTTAATGAGAAGAGAGATG 59.294 40.741 0.00 0.00 0.00 2.90
2718 4566 7.398618 TCAAGGAGTTAATGAGAAGAGAGATGT 59.601 37.037 0.00 0.00 0.00 3.06
2719 4567 7.732222 AGGAGTTAATGAGAAGAGAGATGTT 57.268 36.000 0.00 0.00 0.00 2.71
2720 4568 8.144862 AGGAGTTAATGAGAAGAGAGATGTTT 57.855 34.615 0.00 0.00 0.00 2.83
2721 4569 8.040132 AGGAGTTAATGAGAAGAGAGATGTTTG 58.960 37.037 0.00 0.00 0.00 2.93
2722 4570 7.821846 GGAGTTAATGAGAAGAGAGATGTTTGT 59.178 37.037 0.00 0.00 0.00 2.83
2723 4571 8.545229 AGTTAATGAGAAGAGAGATGTTTGTG 57.455 34.615 0.00 0.00 0.00 3.33
2724 4572 8.370940 AGTTAATGAGAAGAGAGATGTTTGTGA 58.629 33.333 0.00 0.00 0.00 3.58
2725 4573 9.160496 GTTAATGAGAAGAGAGATGTTTGTGAT 57.840 33.333 0.00 0.00 0.00 3.06
2728 4576 8.715191 ATGAGAAGAGAGATGTTTGTGATAAC 57.285 34.615 0.00 0.00 0.00 1.89
2729 4577 7.670364 TGAGAAGAGAGATGTTTGTGATAACA 58.330 34.615 0.00 0.00 41.81 2.41
2731 4579 9.809096 GAGAAGAGAGATGTTTGTGATAACATA 57.191 33.333 2.29 0.00 45.98 2.29
2734 4582 9.725019 AAGAGAGATGTTTGTGATAACATAACA 57.275 29.630 11.16 11.16 45.98 2.41
2735 4583 9.155975 AGAGAGATGTTTGTGATAACATAACAC 57.844 33.333 11.05 0.00 45.98 3.32
2736 4584 8.846943 AGAGATGTTTGTGATAACATAACACA 57.153 30.769 11.05 0.00 45.98 3.72
2737 4585 8.721478 AGAGATGTTTGTGATAACATAACACAC 58.279 33.333 11.05 9.30 45.98 3.82
2738 4586 7.816640 AGATGTTTGTGATAACATAACACACC 58.183 34.615 11.05 6.28 45.98 4.16
2739 4587 6.320494 TGTTTGTGATAACATAACACACCC 57.680 37.500 0.00 0.00 42.80 4.61
2740 4588 5.241949 TGTTTGTGATAACATAACACACCCC 59.758 40.000 0.00 0.00 42.80 4.95
2741 4589 4.642466 TGTGATAACATAACACACCCCA 57.358 40.909 0.00 0.00 39.17 4.96
2742 4590 4.986783 TGTGATAACATAACACACCCCAA 58.013 39.130 0.00 0.00 39.17 4.12
2743 4591 5.575157 TGTGATAACATAACACACCCCAAT 58.425 37.500 0.00 0.00 39.17 3.16
2744 4592 6.722328 TGTGATAACATAACACACCCCAATA 58.278 36.000 0.00 0.00 39.17 1.90
2745 4593 6.600032 TGTGATAACATAACACACCCCAATAC 59.400 38.462 0.00 0.00 39.17 1.89
2746 4594 6.600032 GTGATAACATAACACACCCCAATACA 59.400 38.462 0.00 0.00 35.06 2.29
2747 4595 7.121463 GTGATAACATAACACACCCCAATACAA 59.879 37.037 0.00 0.00 35.06 2.41
2748 4596 7.670140 TGATAACATAACACACCCCAATACAAA 59.330 33.333 0.00 0.00 0.00 2.83
2749 4597 6.732896 AACATAACACACCCCAATACAAAA 57.267 33.333 0.00 0.00 0.00 2.44
2750 4598 6.926630 ACATAACACACCCCAATACAAAAT 57.073 33.333 0.00 0.00 0.00 1.82
2751 4599 6.696411 ACATAACACACCCCAATACAAAATG 58.304 36.000 0.00 0.00 0.00 2.32
2752 4600 6.495181 ACATAACACACCCCAATACAAAATGA 59.505 34.615 0.00 0.00 0.00 2.57
2753 4601 5.467035 AACACACCCCAATACAAAATGAG 57.533 39.130 0.00 0.00 0.00 2.90
2754 4602 4.479158 ACACACCCCAATACAAAATGAGT 58.521 39.130 0.00 0.00 0.00 3.41
2755 4603 4.522789 ACACACCCCAATACAAAATGAGTC 59.477 41.667 0.00 0.00 0.00 3.36
2756 4604 4.766891 CACACCCCAATACAAAATGAGTCT 59.233 41.667 0.00 0.00 0.00 3.24
2757 4605 5.943416 CACACCCCAATACAAAATGAGTCTA 59.057 40.000 0.00 0.00 0.00 2.59
2758 4606 5.944007 ACACCCCAATACAAAATGAGTCTAC 59.056 40.000 0.00 0.00 0.00 2.59
2759 4607 5.943416 CACCCCAATACAAAATGAGTCTACA 59.057 40.000 0.00 0.00 0.00 2.74
2760 4608 6.603201 CACCCCAATACAAAATGAGTCTACAT 59.397 38.462 0.00 0.00 0.00 2.29
2761 4609 6.828785 ACCCCAATACAAAATGAGTCTACATC 59.171 38.462 0.00 0.00 0.00 3.06
2762 4610 7.056635 CCCCAATACAAAATGAGTCTACATCT 58.943 38.462 0.00 0.00 0.00 2.90
2763 4611 8.210946 CCCCAATACAAAATGAGTCTACATCTA 58.789 37.037 0.00 0.00 0.00 1.98
2764 4612 9.613428 CCCAATACAAAATGAGTCTACATCTAA 57.387 33.333 0.00 0.00 0.00 2.10
2806 4654 9.031360 CATGATACTACACATGTTACTACCAAC 57.969 37.037 0.00 0.00 38.98 3.77
2807 4655 8.357290 TGATACTACACATGTTACTACCAACT 57.643 34.615 0.00 0.00 0.00 3.16
2808 4656 9.465199 TGATACTACACATGTTACTACCAACTA 57.535 33.333 0.00 0.00 0.00 2.24
2809 4657 9.727627 GATACTACACATGTTACTACCAACTAC 57.272 37.037 0.00 0.00 0.00 2.73
2810 4658 6.615088 ACTACACATGTTACTACCAACTACG 58.385 40.000 0.00 0.00 0.00 3.51
2811 4659 4.813027 ACACATGTTACTACCAACTACGG 58.187 43.478 0.00 0.00 0.00 4.02
2812 4660 4.523943 ACACATGTTACTACCAACTACGGA 59.476 41.667 0.00 0.00 0.00 4.69
2813 4661 5.010922 ACACATGTTACTACCAACTACGGAA 59.989 40.000 0.00 0.00 0.00 4.30
2814 4662 5.575606 CACATGTTACTACCAACTACGGAAG 59.424 44.000 0.00 0.00 0.00 3.46
2816 4664 6.434028 ACATGTTACTACCAACTACGGAAGTA 59.566 38.462 0.00 0.00 46.88 2.24
2830 4678 4.916183 ACGGAAGTAGTAACTGGACTAGT 58.084 43.478 0.00 0.00 46.88 2.57
2831 4679 6.054860 ACGGAAGTAGTAACTGGACTAGTA 57.945 41.667 0.00 0.00 46.88 1.82
2832 4680 6.476378 ACGGAAGTAGTAACTGGACTAGTAA 58.524 40.000 0.00 0.00 46.88 2.24
2833 4681 6.372937 ACGGAAGTAGTAACTGGACTAGTAAC 59.627 42.308 0.00 0.00 46.88 2.50
2834 4682 6.372659 CGGAAGTAGTAACTGGACTAGTAACA 59.627 42.308 0.00 0.00 39.18 2.41
2835 4683 7.066766 CGGAAGTAGTAACTGGACTAGTAACAT 59.933 40.741 0.00 0.00 39.18 2.71
2836 4684 9.401058 GGAAGTAGTAACTGGACTAGTAACATA 57.599 37.037 0.00 0.00 39.18 2.29
2839 4687 8.848182 AGTAGTAACTGGACTAGTAACATATGC 58.152 37.037 1.58 0.00 39.18 3.14
2840 4688 7.655521 AGTAACTGGACTAGTAACATATGCA 57.344 36.000 1.58 0.00 39.18 3.96
2841 4689 8.251383 AGTAACTGGACTAGTAACATATGCAT 57.749 34.615 3.79 3.79 39.18 3.96
2842 4690 8.144478 AGTAACTGGACTAGTAACATATGCATG 58.856 37.037 10.16 0.00 39.18 4.06
2843 4691 6.485830 ACTGGACTAGTAACATATGCATGT 57.514 37.500 10.16 0.00 38.49 3.21
2854 4702 5.116084 ACATATGCATGTTACTTCCCACT 57.884 39.130 10.16 0.00 42.98 4.00
2855 4703 6.247229 ACATATGCATGTTACTTCCCACTA 57.753 37.500 10.16 0.00 42.98 2.74
2856 4704 6.841601 ACATATGCATGTTACTTCCCACTAT 58.158 36.000 10.16 0.00 42.98 2.12
2857 4705 6.712095 ACATATGCATGTTACTTCCCACTATG 59.288 38.462 10.16 2.11 42.98 2.23
2858 4706 3.278574 TGCATGTTACTTCCCACTATGC 58.721 45.455 0.00 0.00 39.72 3.14
2859 4707 2.618709 GCATGTTACTTCCCACTATGCC 59.381 50.000 0.00 0.00 34.85 4.40
2860 4708 3.214328 CATGTTACTTCCCACTATGCCC 58.786 50.000 0.00 0.00 0.00 5.36
2861 4709 2.270858 TGTTACTTCCCACTATGCCCA 58.729 47.619 0.00 0.00 0.00 5.36
2862 4710 2.026636 TGTTACTTCCCACTATGCCCAC 60.027 50.000 0.00 0.00 0.00 4.61
2863 4711 1.209621 TACTTCCCACTATGCCCACC 58.790 55.000 0.00 0.00 0.00 4.61
2871 4719 2.238646 CCACTATGCCCACCTTAGACAA 59.761 50.000 0.00 0.00 0.00 3.18
2873 4721 2.910319 ACTATGCCCACCTTAGACAACA 59.090 45.455 0.00 0.00 0.00 3.33
2875 4723 1.136828 TGCCCACCTTAGACAACACT 58.863 50.000 0.00 0.00 0.00 3.55
2878 4726 2.767505 CCCACCTTAGACAACACTCAC 58.232 52.381 0.00 0.00 0.00 3.51
2880 4728 2.404215 CACCTTAGACAACACTCACCG 58.596 52.381 0.00 0.00 0.00 4.94
2899 4747 3.704566 ACCGGTGTGATATCATGTGTACT 59.295 43.478 6.12 0.00 0.00 2.73
2975 4832 9.095065 ACGTAATAGTATGAAAGGTGTGAATTC 57.905 33.333 0.00 0.00 0.00 2.17
2988 4845 6.638610 AGGTGTGAATTCTGAAGTCTGATAG 58.361 40.000 17.42 0.00 0.00 2.08
3012 4869 8.768957 AGTATGTATACTATTGATGCAGCTTG 57.231 34.615 2.53 0.00 41.55 4.01
3015 4872 2.062971 ACTATTGATGCAGCTTGGGG 57.937 50.000 2.53 0.00 0.00 4.96
3020 4877 2.045926 ATGCAGCTTGGGGACGAC 60.046 61.111 0.00 0.00 0.00 4.34
3027 4884 2.601067 TTGGGGACGACGGCAGTA 60.601 61.111 1.63 0.00 0.00 2.74
3035 4907 3.492137 GGGACGACGGCAGTATATTCTTT 60.492 47.826 1.63 0.00 0.00 2.52
3098 4970 7.002276 TCATGGCTGATGAAATTGACATAGAT 58.998 34.615 0.00 0.00 38.19 1.98
3100 4972 6.124340 TGGCTGATGAAATTGACATAGATGT 58.876 36.000 0.00 0.00 45.16 3.06
3156 5028 8.206325 TCAGAGAAAGCTATTTAATTCAGCAG 57.794 34.615 3.03 0.00 37.78 4.24
3160 5032 8.517062 AGAAAGCTATTTAATTCAGCAGTGAT 57.483 30.769 0.00 0.00 37.78 3.06
3199 5071 4.210331 AGGGCACTACATTTTCATGATCC 58.790 43.478 0.00 0.00 34.11 3.36
3201 5073 4.037208 GGGCACTACATTTTCATGATCCTG 59.963 45.833 0.00 0.00 34.11 3.86
3208 5080 4.529377 ACATTTTCATGATCCTGGCAACTT 59.471 37.500 0.00 0.00 34.11 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.827898 CTCCGAGCCTCCGACACC 61.828 72.222 0.00 0.00 0.00 4.16
2 3 4.500116 GCTCCGAGCCTCCGACAC 62.500 72.222 9.42 0.00 34.48 3.67
4 5 2.579684 AAATGCTCCGAGCCTCCGAC 62.580 60.000 17.81 0.00 41.51 4.79
5 6 1.899437 AAAATGCTCCGAGCCTCCGA 61.899 55.000 17.81 0.00 41.51 4.55
6 7 1.026718 AAAAATGCTCCGAGCCTCCG 61.027 55.000 17.81 0.00 41.51 4.63
7 8 2.873797 AAAAATGCTCCGAGCCTCC 58.126 52.632 17.81 0.00 41.51 4.30
35 36 2.807967 TGTACTGCTGAAGATGTTGTGC 59.192 45.455 0.00 0.00 0.00 4.57
40 41 5.220710 AGTTTCTGTACTGCTGAAGATGT 57.779 39.130 0.00 0.00 36.60 3.06
129 130 4.612943 GGTCTTCTCATCGTCCTACATTC 58.387 47.826 0.00 0.00 0.00 2.67
139 140 1.066587 GCCCTCGGTCTTCTCATCG 59.933 63.158 0.00 0.00 0.00 3.84
144 145 3.305720 TGTATATTGCCCTCGGTCTTCT 58.694 45.455 0.00 0.00 0.00 2.85
160 161 8.015658 CAGAATCGTCGTGAGTTCATATGTATA 58.984 37.037 1.90 0.00 0.00 1.47
192 193 0.109723 AGCCAACGGAAGCAAACCTA 59.890 50.000 0.00 0.00 0.00 3.08
193 194 0.755327 AAGCCAACGGAAGCAAACCT 60.755 50.000 0.00 0.00 0.00 3.50
194 195 0.955905 TAAGCCAACGGAAGCAAACC 59.044 50.000 0.00 0.00 0.00 3.27
195 196 1.666023 GCTAAGCCAACGGAAGCAAAC 60.666 52.381 0.00 0.00 33.38 2.93
196 197 0.596082 GCTAAGCCAACGGAAGCAAA 59.404 50.000 0.00 0.00 33.38 3.68
212 213 2.232696 TGAGTATTTGACGGCTGTGCTA 59.767 45.455 0.80 0.00 0.00 3.49
233 234 1.001633 AGTTCAACCGTCAACGCCTAT 59.998 47.619 0.00 0.00 38.18 2.57
256 257 1.650242 TTGGAGTTCAGGTTGGGCCA 61.650 55.000 0.00 0.00 40.61 5.36
258 259 0.467290 TGTTGGAGTTCAGGTTGGGC 60.467 55.000 0.00 0.00 0.00 5.36
259 260 1.609208 CTGTTGGAGTTCAGGTTGGG 58.391 55.000 0.00 0.00 0.00 4.12
260 261 1.609208 CCTGTTGGAGTTCAGGTTGG 58.391 55.000 3.38 0.00 44.19 3.77
271 272 1.593196 CTTTTCTCACGCCTGTTGGA 58.407 50.000 0.00 0.00 34.57 3.53
326 348 1.153862 CTGCTCACGTCTCTCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
328 350 1.153862 GGCTGCTCACGTCTCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
615 644 0.936297 CTTTTGTGCAGCAGGTTCGC 60.936 55.000 0.00 0.00 0.00 4.70
655 694 3.054878 GCTCAAGCACTGGTCAAATTTG 58.945 45.455 12.15 12.15 41.59 2.32
663 702 3.244700 ACATTTAGAGCTCAAGCACTGGT 60.245 43.478 17.77 0.56 41.86 4.00
682 725 0.403271 ACAAGAGCTGCCCAGAACAT 59.597 50.000 0.00 0.00 0.00 2.71
692 735 5.245531 TGTTACCTATTCCAACAAGAGCTG 58.754 41.667 0.00 0.00 0.00 4.24
733 786 9.354673 TGACTCTCAAAAAGAAATTCCTATGTT 57.645 29.630 0.00 0.00 32.23 2.71
734 787 8.924511 TGACTCTCAAAAAGAAATTCCTATGT 57.075 30.769 0.00 0.00 32.23 2.29
735 788 9.837525 CTTGACTCTCAAAAAGAAATTCCTATG 57.162 33.333 0.00 0.00 35.73 2.23
736 789 9.018582 CCTTGACTCTCAAAAAGAAATTCCTAT 57.981 33.333 0.00 0.00 35.73 2.57
746 799 8.327941 TCATACATTCCTTGACTCTCAAAAAG 57.672 34.615 0.00 0.00 35.73 2.27
823 881 8.833264 CCAACACAACGTAATTATTTTCGTTAG 58.167 33.333 15.50 13.88 43.90 2.34
980 2578 4.739716 CCATTTTCAACCTCGAAACAGTTG 59.260 41.667 9.72 9.72 41.75 3.16
981 2579 4.736464 GCCATTTTCAACCTCGAAACAGTT 60.736 41.667 0.00 0.00 34.68 3.16
983 2581 3.308530 GCCATTTTCAACCTCGAAACAG 58.691 45.455 0.00 0.00 34.68 3.16
990 2588 5.659440 TCTTATTGGCCATTTTCAACCTC 57.341 39.130 6.09 0.00 0.00 3.85
1020 2618 2.630158 CCCTTCAACTGCTCTCTCATG 58.370 52.381 0.00 0.00 0.00 3.07
1105 2703 2.683867 CTGTTGTTTCCCGGTTGTAACA 59.316 45.455 0.00 4.63 0.00 2.41
1145 2743 2.107901 TCCTTATCCCTCCCTACGACTC 59.892 54.545 0.00 0.00 0.00 3.36
1191 2789 2.746362 CTCTTTTGTGATGCTCCCAGAC 59.254 50.000 0.00 0.00 0.00 3.51
1272 2870 4.714632 TGAACTCCGAATCCTTGAAAACT 58.285 39.130 0.00 0.00 0.00 2.66
1287 2885 3.119424 CCCGAGAGTACTCTTTGAACTCC 60.119 52.174 25.86 9.97 40.42 3.85
1288 2886 3.506844 ACCCGAGAGTACTCTTTGAACTC 59.493 47.826 25.86 10.90 40.61 3.01
1393 2992 8.473358 TTTTCTATCATCTGAAGGTCGGTATA 57.527 34.615 0.00 0.00 0.00 1.47
1398 2997 7.928706 AGGTTATTTTCTATCATCTGAAGGTCG 59.071 37.037 0.00 0.00 0.00 4.79
1433 3032 7.658575 TGATTAGTACGCTTTTAACAGAAAGGT 59.341 33.333 0.00 0.00 37.17 3.50
1449 3048 7.805542 CACAGGTCATCTAAGATGATTAGTACG 59.194 40.741 0.00 0.00 0.00 3.67
1488 3087 5.703130 AGTCTTCAACCTTTCTAACTGATGC 59.297 40.000 0.00 0.00 0.00 3.91
1586 3185 0.768221 ATATGGCCCCACCGTCTGAT 60.768 55.000 0.00 0.00 43.94 2.90
1598 3203 2.192263 AGGGAGCTAGCTTATATGGCC 58.808 52.381 20.42 13.13 0.00 5.36
1688 3293 0.824109 CATCCCGACCAGCTCTAACA 59.176 55.000 0.00 0.00 0.00 2.41
1748 3353 6.270231 AGAGTCCAACATATACCCAATAGACC 59.730 42.308 0.00 0.00 0.00 3.85
1815 3423 3.050275 GAGGCAAGCACGTCCCAC 61.050 66.667 0.00 0.00 0.00 4.61
1838 3446 5.619309 GCATGCACATGATGAGGTGAATATC 60.619 44.000 14.21 0.00 41.20 1.63
1932 3540 7.610305 TCTTTAGCTATAAAGTGACCTTTTGGG 59.390 37.037 8.48 0.00 45.46 4.12
1947 3555 9.251440 TGGTGAACTAGAACTTCTTTAGCTATA 57.749 33.333 0.00 0.00 0.00 1.31
1961 3569 4.922206 AGCAATCCATTGGTGAACTAGAA 58.078 39.130 1.86 0.00 45.69 2.10
2003 3611 7.454694 TGCTATATTTATTAGAGAGTGCCCTCA 59.545 37.037 0.00 0.00 40.40 3.86
2004 3612 7.841956 TGCTATATTTATTAGAGAGTGCCCTC 58.158 38.462 0.00 0.00 38.04 4.30
2008 3622 9.868277 ATCACTGCTATATTTATTAGAGAGTGC 57.132 33.333 0.00 0.00 32.85 4.40
2076 3690 0.105760 TCACCCATGGCAACTTTGGT 60.106 50.000 6.09 0.00 40.01 3.67
2084 3701 0.322456 GCAGTAACTCACCCATGGCA 60.322 55.000 6.09 0.00 0.00 4.92
2146 3886 7.396339 AGAATATGCACCATATGATCTGCATTT 59.604 33.333 26.74 20.53 45.91 2.32
2174 3914 3.383761 GTGGTGTTGGCAAAATTCTCAG 58.616 45.455 0.00 0.00 0.00 3.35
2182 3922 2.026822 ACAAAATGGTGGTGTTGGCAAA 60.027 40.909 0.00 0.00 0.00 3.68
2294 4082 4.700700 AGTAAAACACTAGGCGTCAAAGT 58.299 39.130 0.00 0.00 34.98 2.66
2301 4089 8.260270 AGGTAAATTTAGTAAAACACTAGGCG 57.740 34.615 0.00 0.00 40.83 5.52
2319 4107 9.322773 GTTCTTAATCGGCTACTAAAGGTAAAT 57.677 33.333 0.00 0.00 0.00 1.40
2320 4108 8.534496 AGTTCTTAATCGGCTACTAAAGGTAAA 58.466 33.333 0.00 0.00 0.00 2.01
2321 4109 8.071177 AGTTCTTAATCGGCTACTAAAGGTAA 57.929 34.615 0.00 0.00 0.00 2.85
2322 4110 7.651027 AGTTCTTAATCGGCTACTAAAGGTA 57.349 36.000 0.00 0.00 0.00 3.08
2323 4111 6.541934 AGTTCTTAATCGGCTACTAAAGGT 57.458 37.500 0.00 0.00 0.00 3.50
2324 4112 7.548075 TCAAAGTTCTTAATCGGCTACTAAAGG 59.452 37.037 0.00 0.00 0.00 3.11
2325 4113 8.475331 TCAAAGTTCTTAATCGGCTACTAAAG 57.525 34.615 0.00 0.00 0.00 1.85
2326 4114 8.836268 TTCAAAGTTCTTAATCGGCTACTAAA 57.164 30.769 0.00 0.00 0.00 1.85
2327 4115 9.095065 GATTCAAAGTTCTTAATCGGCTACTAA 57.905 33.333 0.00 0.00 0.00 2.24
2328 4116 8.255206 TGATTCAAAGTTCTTAATCGGCTACTA 58.745 33.333 0.00 0.00 32.23 1.82
2329 4117 7.103641 TGATTCAAAGTTCTTAATCGGCTACT 58.896 34.615 0.00 0.00 32.23 2.57
2332 4135 8.682936 ATATGATTCAAAGTTCTTAATCGGCT 57.317 30.769 0.00 0.00 32.23 5.52
2359 4162 9.567776 TCTTAGTTTCATAGGTCATGTTTCAAA 57.432 29.630 0.00 0.00 35.96 2.69
2366 4169 6.108687 TGCAGTCTTAGTTTCATAGGTCATG 58.891 40.000 0.00 0.00 35.81 3.07
2369 4172 8.894768 ATTATGCAGTCTTAGTTTCATAGGTC 57.105 34.615 0.00 0.00 0.00 3.85
2412 4216 7.122055 ACATTTGGTTTGTAGTCTGTCTTGAAA 59.878 33.333 0.00 0.00 0.00 2.69
2415 4219 6.377327 ACATTTGGTTTGTAGTCTGTCTTG 57.623 37.500 0.00 0.00 0.00 3.02
2419 4223 5.650266 TGTGAACATTTGGTTTGTAGTCTGT 59.350 36.000 0.00 0.00 40.63 3.41
2420 4224 6.130298 TGTGAACATTTGGTTTGTAGTCTG 57.870 37.500 0.00 0.00 40.63 3.51
2430 4236 3.360867 TGTGAGGTTGTGAACATTTGGT 58.639 40.909 0.00 0.00 0.00 3.67
2448 4254 1.377725 GGGCCCTCACTGACATGTG 60.378 63.158 17.04 0.00 39.15 3.21
2449 4255 2.959484 CGGGCCCTCACTGACATGT 61.959 63.158 22.43 0.00 0.00 3.21
2450 4256 2.124983 CGGGCCCTCACTGACATG 60.125 66.667 22.43 0.00 0.00 3.21
2464 4270 1.672356 CCAACAAGGCAGAGTCGGG 60.672 63.158 0.00 0.00 0.00 5.14
2478 4284 2.233186 ACCTCTAAACTACGGAGCCAAC 59.767 50.000 0.00 0.00 0.00 3.77
2479 4285 2.532843 ACCTCTAAACTACGGAGCCAA 58.467 47.619 0.00 0.00 0.00 4.52
2488 4319 7.549147 ACCTGACATGTAAACCTCTAAACTA 57.451 36.000 0.00 0.00 0.00 2.24
2493 4324 4.960469 CCCTACCTGACATGTAAACCTCTA 59.040 45.833 0.00 0.00 0.00 2.43
2497 4328 2.092592 CCCCCTACCTGACATGTAAACC 60.093 54.545 0.00 0.00 0.00 3.27
2501 4332 0.341961 AGCCCCCTACCTGACATGTA 59.658 55.000 0.00 0.00 0.00 2.29
2503 4334 0.982852 TGAGCCCCCTACCTGACATG 60.983 60.000 0.00 0.00 0.00 3.21
2504 4335 0.253160 TTGAGCCCCCTACCTGACAT 60.253 55.000 0.00 0.00 0.00 3.06
2517 4348 6.378582 TCAACAAAACGAATAATCTTGAGCC 58.621 36.000 0.00 0.00 0.00 4.70
2518 4349 7.298122 TCTCAACAAAACGAATAATCTTGAGC 58.702 34.615 0.00 0.00 33.62 4.26
2529 4360 6.443934 TCTGGATTTTCTCAACAAAACGAA 57.556 33.333 0.00 0.00 0.00 3.85
2532 4363 6.534793 TGCTTTCTGGATTTTCTCAACAAAAC 59.465 34.615 0.00 0.00 0.00 2.43
2533 4364 6.638610 TGCTTTCTGGATTTTCTCAACAAAA 58.361 32.000 0.00 0.00 0.00 2.44
2548 4379 1.522668 TGGTTCACGATGCTTTCTGG 58.477 50.000 0.00 0.00 0.00 3.86
2549 4380 2.743664 TGATGGTTCACGATGCTTTCTG 59.256 45.455 0.00 0.00 0.00 3.02
2555 4386 0.316442 CGCATGATGGTTCACGATGC 60.316 55.000 0.00 0.00 33.82 3.91
2559 4390 0.578683 CTAGCGCATGATGGTTCACG 59.421 55.000 11.47 0.00 33.85 4.35
2561 4392 1.807755 GCTCTAGCGCATGATGGTTCA 60.808 52.381 11.47 0.00 36.00 3.18
2562 4393 0.864455 GCTCTAGCGCATGATGGTTC 59.136 55.000 11.47 0.00 0.00 3.62
2566 4397 1.861971 TTCTGCTCTAGCGCATGATG 58.138 50.000 11.47 0.00 45.83 3.07
2568 4399 2.385013 TTTTCTGCTCTAGCGCATGA 57.615 45.000 11.47 6.14 45.83 3.07
2570 4401 2.216898 GGATTTTCTGCTCTAGCGCAT 58.783 47.619 11.47 0.00 45.83 4.73
2572 4403 1.656652 TGGATTTTCTGCTCTAGCGC 58.343 50.000 0.00 0.00 45.83 5.92
2573 4404 3.726607 AGATGGATTTTCTGCTCTAGCG 58.273 45.455 0.00 0.00 45.83 4.26
2581 4429 7.972301 AGGGAGTAGAATAGATGGATTTTCTG 58.028 38.462 0.00 0.00 31.29 3.02
2590 4438 6.154363 GGAGAATGGAGGGAGTAGAATAGATG 59.846 46.154 0.00 0.00 0.00 2.90
2591 4439 6.260663 GGAGAATGGAGGGAGTAGAATAGAT 58.739 44.000 0.00 0.00 0.00 1.98
2595 4443 3.211000 AGGGAGAATGGAGGGAGTAGAAT 59.789 47.826 0.00 0.00 0.00 2.40
2632 4480 3.467803 GGCTAAGTTACTGCCACTATGG 58.532 50.000 8.60 0.00 45.46 2.74
2639 4487 3.934068 TGTTACTGGCTAAGTTACTGCC 58.066 45.455 6.76 6.76 46.26 4.85
2640 4488 6.237755 CGTTATGTTACTGGCTAAGTTACTGC 60.238 42.308 9.51 0.00 38.87 4.40
2641 4489 6.237755 GCGTTATGTTACTGGCTAAGTTACTG 60.238 42.308 9.51 0.00 38.87 2.74
2642 4490 5.809051 GCGTTATGTTACTGGCTAAGTTACT 59.191 40.000 9.51 0.00 38.87 2.24
2643 4491 5.577945 TGCGTTATGTTACTGGCTAAGTTAC 59.422 40.000 0.00 0.97 40.56 2.50
2644 4492 5.577945 GTGCGTTATGTTACTGGCTAAGTTA 59.422 40.000 0.00 0.00 40.56 2.24
2645 4493 4.390909 GTGCGTTATGTTACTGGCTAAGTT 59.609 41.667 0.00 0.00 40.56 2.66
2646 4494 3.930848 GTGCGTTATGTTACTGGCTAAGT 59.069 43.478 0.00 0.00 43.40 2.24
2647 4495 3.308866 GGTGCGTTATGTTACTGGCTAAG 59.691 47.826 0.00 0.00 0.00 2.18
2648 4496 3.264104 GGTGCGTTATGTTACTGGCTAA 58.736 45.455 0.00 0.00 0.00 3.09
2649 4497 2.419021 GGGTGCGTTATGTTACTGGCTA 60.419 50.000 0.00 0.00 0.00 3.93
2650 4498 1.677820 GGGTGCGTTATGTTACTGGCT 60.678 52.381 0.00 0.00 0.00 4.75
2651 4499 0.730840 GGGTGCGTTATGTTACTGGC 59.269 55.000 0.00 0.00 0.00 4.85
2652 4500 1.339247 TGGGGTGCGTTATGTTACTGG 60.339 52.381 0.00 0.00 0.00 4.00
2653 4501 2.102070 TGGGGTGCGTTATGTTACTG 57.898 50.000 0.00 0.00 0.00 2.74
2654 4502 2.617021 CCTTGGGGTGCGTTATGTTACT 60.617 50.000 0.00 0.00 0.00 2.24
2655 4503 1.741145 CCTTGGGGTGCGTTATGTTAC 59.259 52.381 0.00 0.00 0.00 2.50
2656 4504 1.351683 ACCTTGGGGTGCGTTATGTTA 59.648 47.619 0.00 0.00 45.43 2.41
2657 4505 0.111639 ACCTTGGGGTGCGTTATGTT 59.888 50.000 0.00 0.00 45.43 2.71
2658 4506 0.985760 TACCTTGGGGTGCGTTATGT 59.014 50.000 0.00 0.00 46.75 2.29
2659 4507 2.116827 TTACCTTGGGGTGCGTTATG 57.883 50.000 0.00 0.00 46.75 1.90
2660 4508 2.883122 TTTACCTTGGGGTGCGTTAT 57.117 45.000 0.00 0.00 46.75 1.89
2661 4509 2.883122 ATTTACCTTGGGGTGCGTTA 57.117 45.000 0.00 0.00 46.75 3.18
2662 4510 2.003937 AATTTACCTTGGGGTGCGTT 57.996 45.000 0.00 0.00 46.75 4.84
2663 4511 1.616374 CAAATTTACCTTGGGGTGCGT 59.384 47.619 0.00 0.00 46.75 5.24
2664 4512 1.671556 GCAAATTTACCTTGGGGTGCG 60.672 52.381 0.00 0.00 46.75 5.34
2665 4513 1.623311 AGCAAATTTACCTTGGGGTGC 59.377 47.619 0.00 0.00 46.75 5.01
2666 4514 5.675684 ATAAGCAAATTTACCTTGGGGTG 57.324 39.130 11.50 0.00 46.75 4.61
2668 4516 7.069331 TGACATATAAGCAAATTTACCTTGGGG 59.931 37.037 11.50 0.00 38.88 4.96
2669 4517 8.006298 TGACATATAAGCAAATTTACCTTGGG 57.994 34.615 11.50 0.00 0.00 4.12
2670 4518 9.520204 CTTGACATATAAGCAAATTTACCTTGG 57.480 33.333 11.50 0.00 0.00 3.61
2671 4519 9.520204 CCTTGACATATAAGCAAATTTACCTTG 57.480 33.333 11.50 1.70 0.00 3.61
2672 4520 9.474313 TCCTTGACATATAAGCAAATTTACCTT 57.526 29.630 7.98 7.98 0.00 3.50
2673 4521 9.125026 CTCCTTGACATATAAGCAAATTTACCT 57.875 33.333 0.00 0.00 0.00 3.08
2674 4522 8.903820 ACTCCTTGACATATAAGCAAATTTACC 58.096 33.333 0.00 0.00 0.00 2.85
2680 4528 9.679661 TCATTAACTCCTTGACATATAAGCAAA 57.320 29.630 0.00 0.00 0.00 3.68
2681 4529 9.330063 CTCATTAACTCCTTGACATATAAGCAA 57.670 33.333 0.00 0.00 0.00 3.91
2682 4530 8.704668 TCTCATTAACTCCTTGACATATAAGCA 58.295 33.333 0.00 0.00 0.00 3.91
2683 4531 9.547753 TTCTCATTAACTCCTTGACATATAAGC 57.452 33.333 0.00 0.00 0.00 3.09
2687 4535 9.206690 TCTCTTCTCATTAACTCCTTGACATAT 57.793 33.333 0.00 0.00 0.00 1.78
2688 4536 8.595362 TCTCTTCTCATTAACTCCTTGACATA 57.405 34.615 0.00 0.00 0.00 2.29
2689 4537 7.398618 TCTCTCTTCTCATTAACTCCTTGACAT 59.601 37.037 0.00 0.00 0.00 3.06
2690 4538 6.721668 TCTCTCTTCTCATTAACTCCTTGACA 59.278 38.462 0.00 0.00 0.00 3.58
2691 4539 7.164230 TCTCTCTTCTCATTAACTCCTTGAC 57.836 40.000 0.00 0.00 0.00 3.18
2692 4540 7.398618 ACATCTCTCTTCTCATTAACTCCTTGA 59.601 37.037 0.00 0.00 0.00 3.02
2693 4541 7.555087 ACATCTCTCTTCTCATTAACTCCTTG 58.445 38.462 0.00 0.00 0.00 3.61
2694 4542 7.732222 ACATCTCTCTTCTCATTAACTCCTT 57.268 36.000 0.00 0.00 0.00 3.36
2695 4543 7.732222 AACATCTCTCTTCTCATTAACTCCT 57.268 36.000 0.00 0.00 0.00 3.69
2696 4544 7.821846 ACAAACATCTCTCTTCTCATTAACTCC 59.178 37.037 0.00 0.00 0.00 3.85
2697 4545 8.655092 CACAAACATCTCTCTTCTCATTAACTC 58.345 37.037 0.00 0.00 0.00 3.01
2698 4546 8.370940 TCACAAACATCTCTCTTCTCATTAACT 58.629 33.333 0.00 0.00 0.00 2.24
2699 4547 8.539770 TCACAAACATCTCTCTTCTCATTAAC 57.460 34.615 0.00 0.00 0.00 2.01
2702 4550 9.160496 GTTATCACAAACATCTCTCTTCTCATT 57.840 33.333 0.00 0.00 0.00 2.57
2703 4551 8.316946 TGTTATCACAAACATCTCTCTTCTCAT 58.683 33.333 0.00 0.00 34.50 2.90
2704 4552 7.670364 TGTTATCACAAACATCTCTCTTCTCA 58.330 34.615 0.00 0.00 34.50 3.27
2705 4553 8.715191 ATGTTATCACAAACATCTCTCTTCTC 57.285 34.615 0.00 0.00 44.79 2.87
2708 4556 9.725019 TGTTATGTTATCACAAACATCTCTCTT 57.275 29.630 5.55 0.00 44.79 2.85
2709 4557 9.155975 GTGTTATGTTATCACAAACATCTCTCT 57.844 33.333 5.55 0.00 44.79 3.10
2710 4558 8.935844 TGTGTTATGTTATCACAAACATCTCTC 58.064 33.333 5.55 3.54 44.79 3.20
2711 4559 8.721478 GTGTGTTATGTTATCACAAACATCTCT 58.279 33.333 5.55 0.00 44.79 3.10
2712 4560 7.962918 GGTGTGTTATGTTATCACAAACATCTC 59.037 37.037 5.55 2.49 44.79 2.75
2713 4561 7.094377 GGGTGTGTTATGTTATCACAAACATCT 60.094 37.037 5.55 0.00 44.79 2.90
2714 4562 7.027161 GGGTGTGTTATGTTATCACAAACATC 58.973 38.462 5.55 2.56 44.79 3.06
2716 4564 5.241949 GGGGTGTGTTATGTTATCACAAACA 59.758 40.000 0.00 4.64 42.39 2.83
2717 4565 5.241949 TGGGGTGTGTTATGTTATCACAAAC 59.758 40.000 0.00 0.00 42.39 2.93
2718 4566 5.386060 TGGGGTGTGTTATGTTATCACAAA 58.614 37.500 0.00 0.00 42.39 2.83
2719 4567 4.986783 TGGGGTGTGTTATGTTATCACAA 58.013 39.130 0.00 0.00 42.39 3.33
2720 4568 4.642466 TGGGGTGTGTTATGTTATCACA 57.358 40.909 0.00 0.00 39.31 3.58
2721 4569 6.600032 TGTATTGGGGTGTGTTATGTTATCAC 59.400 38.462 0.00 0.00 0.00 3.06
2722 4570 6.722328 TGTATTGGGGTGTGTTATGTTATCA 58.278 36.000 0.00 0.00 0.00 2.15
2723 4571 7.633193 TTGTATTGGGGTGTGTTATGTTATC 57.367 36.000 0.00 0.00 0.00 1.75
2724 4572 8.423906 TTTTGTATTGGGGTGTGTTATGTTAT 57.576 30.769 0.00 0.00 0.00 1.89
2725 4573 7.834881 TTTTGTATTGGGGTGTGTTATGTTA 57.165 32.000 0.00 0.00 0.00 2.41
2726 4574 6.732896 TTTTGTATTGGGGTGTGTTATGTT 57.267 33.333 0.00 0.00 0.00 2.71
2727 4575 6.495181 TCATTTTGTATTGGGGTGTGTTATGT 59.505 34.615 0.00 0.00 0.00 2.29
2728 4576 6.929625 TCATTTTGTATTGGGGTGTGTTATG 58.070 36.000 0.00 0.00 0.00 1.90
2729 4577 6.723977 ACTCATTTTGTATTGGGGTGTGTTAT 59.276 34.615 0.00 0.00 0.00 1.89
2730 4578 6.071984 ACTCATTTTGTATTGGGGTGTGTTA 58.928 36.000 0.00 0.00 0.00 2.41
2731 4579 4.898861 ACTCATTTTGTATTGGGGTGTGTT 59.101 37.500 0.00 0.00 0.00 3.32
2732 4580 4.479158 ACTCATTTTGTATTGGGGTGTGT 58.521 39.130 0.00 0.00 0.00 3.72
2733 4581 4.766891 AGACTCATTTTGTATTGGGGTGTG 59.233 41.667 0.00 0.00 0.00 3.82
2734 4582 4.998051 AGACTCATTTTGTATTGGGGTGT 58.002 39.130 0.00 0.00 0.00 4.16
2735 4583 5.943416 TGTAGACTCATTTTGTATTGGGGTG 59.057 40.000 0.00 0.00 0.00 4.61
2736 4584 6.134535 TGTAGACTCATTTTGTATTGGGGT 57.865 37.500 0.00 0.00 0.00 4.95
2737 4585 7.056635 AGATGTAGACTCATTTTGTATTGGGG 58.943 38.462 0.00 0.00 0.00 4.96
2738 4586 9.613428 TTAGATGTAGACTCATTTTGTATTGGG 57.387 33.333 0.00 0.00 0.00 4.12
2780 4628 9.031360 GTTGGTAGTAACATGTGTAGTATCATG 57.969 37.037 0.00 13.25 44.56 3.07
2781 4629 8.978472 AGTTGGTAGTAACATGTGTAGTATCAT 58.022 33.333 0.00 0.00 33.02 2.45
2782 4630 8.357290 AGTTGGTAGTAACATGTGTAGTATCA 57.643 34.615 0.00 5.58 33.02 2.15
2783 4631 9.727627 GTAGTTGGTAGTAACATGTGTAGTATC 57.272 37.037 0.00 3.12 33.02 2.24
2784 4632 8.400947 CGTAGTTGGTAGTAACATGTGTAGTAT 58.599 37.037 0.00 0.00 33.02 2.12
2785 4633 7.148255 CCGTAGTTGGTAGTAACATGTGTAGTA 60.148 40.741 0.00 0.00 33.02 1.82
2786 4634 6.349611 CCGTAGTTGGTAGTAACATGTGTAGT 60.350 42.308 0.00 0.12 33.02 2.73
2787 4635 6.032094 CCGTAGTTGGTAGTAACATGTGTAG 58.968 44.000 0.00 0.00 33.02 2.74
2788 4636 5.709631 TCCGTAGTTGGTAGTAACATGTGTA 59.290 40.000 0.00 0.00 33.02 2.90
2789 4637 4.523943 TCCGTAGTTGGTAGTAACATGTGT 59.476 41.667 0.00 0.00 33.02 3.72
2790 4638 5.063180 TCCGTAGTTGGTAGTAACATGTG 57.937 43.478 0.00 0.00 33.02 3.21
2791 4639 5.244626 ACTTCCGTAGTTGGTAGTAACATGT 59.755 40.000 0.00 0.00 37.81 3.21
2792 4640 5.717119 ACTTCCGTAGTTGGTAGTAACATG 58.283 41.667 0.00 0.00 37.81 3.21
2793 4641 5.990120 ACTTCCGTAGTTGGTAGTAACAT 57.010 39.130 0.00 0.00 37.81 2.71
2794 4642 6.500684 CTACTTCCGTAGTTGGTAGTAACA 57.499 41.667 1.78 0.00 40.16 2.41
2805 4653 7.093289 TACTAGTCCAGTTACTACTTCCGTAGT 60.093 40.741 0.00 9.73 46.27 2.73
2806 4654 6.112058 ACTAGTCCAGTTACTACTTCCGTAG 58.888 44.000 0.00 0.00 40.92 3.51
2807 4655 6.054860 ACTAGTCCAGTTACTACTTCCGTA 57.945 41.667 0.00 0.00 31.59 4.02
2808 4656 4.916183 ACTAGTCCAGTTACTACTTCCGT 58.084 43.478 0.00 0.00 31.59 4.69
2809 4657 6.372659 TGTTACTAGTCCAGTTACTACTTCCG 59.627 42.308 0.00 0.00 37.61 4.30
2810 4658 7.693969 TGTTACTAGTCCAGTTACTACTTCC 57.306 40.000 0.00 0.00 37.61 3.46
2813 4661 8.848182 GCATATGTTACTAGTCCAGTTACTACT 58.152 37.037 0.00 0.00 37.61 2.57
2814 4662 8.627403 TGCATATGTTACTAGTCCAGTTACTAC 58.373 37.037 0.00 0.00 37.61 2.73
2815 4663 8.756486 TGCATATGTTACTAGTCCAGTTACTA 57.244 34.615 0.00 0.00 37.61 1.82
2816 4664 7.655521 TGCATATGTTACTAGTCCAGTTACT 57.344 36.000 0.00 0.00 37.61 2.24
2817 4665 7.926555 ACATGCATATGTTACTAGTCCAGTTAC 59.073 37.037 0.00 0.00 45.01 2.50
2818 4666 8.018537 ACATGCATATGTTACTAGTCCAGTTA 57.981 34.615 0.00 0.00 45.01 2.24
2819 4667 6.889198 ACATGCATATGTTACTAGTCCAGTT 58.111 36.000 0.00 0.00 45.01 3.16
2820 4668 6.485830 ACATGCATATGTTACTAGTCCAGT 57.514 37.500 0.00 0.00 45.01 4.00
2833 4681 6.348786 GCATAGTGGGAAGTAACATGCATATG 60.349 42.308 0.00 0.00 37.74 1.78
2834 4682 5.707298 GCATAGTGGGAAGTAACATGCATAT 59.293 40.000 0.00 0.00 37.74 1.78
2835 4683 5.063204 GCATAGTGGGAAGTAACATGCATA 58.937 41.667 0.00 0.00 37.74 3.14
2836 4684 3.885297 GCATAGTGGGAAGTAACATGCAT 59.115 43.478 0.00 0.00 37.74 3.96
2837 4685 3.278574 GCATAGTGGGAAGTAACATGCA 58.721 45.455 0.00 0.00 37.74 3.96
2838 4686 2.618709 GGCATAGTGGGAAGTAACATGC 59.381 50.000 0.00 0.00 37.23 4.06
2839 4687 3.214328 GGGCATAGTGGGAAGTAACATG 58.786 50.000 0.00 0.00 0.00 3.21
2840 4688 2.849943 TGGGCATAGTGGGAAGTAACAT 59.150 45.455 0.00 0.00 0.00 2.71
2841 4689 2.026636 GTGGGCATAGTGGGAAGTAACA 60.027 50.000 0.00 0.00 0.00 2.41
2842 4690 2.640184 GTGGGCATAGTGGGAAGTAAC 58.360 52.381 0.00 0.00 0.00 2.50
2843 4691 1.562475 GGTGGGCATAGTGGGAAGTAA 59.438 52.381 0.00 0.00 0.00 2.24
2844 4692 1.209621 GGTGGGCATAGTGGGAAGTA 58.790 55.000 0.00 0.00 0.00 2.24
2845 4693 0.550147 AGGTGGGCATAGTGGGAAGT 60.550 55.000 0.00 0.00 0.00 3.01
2846 4694 0.625849 AAGGTGGGCATAGTGGGAAG 59.374 55.000 0.00 0.00 0.00 3.46
2847 4695 1.843851 CTAAGGTGGGCATAGTGGGAA 59.156 52.381 0.00 0.00 0.00 3.97
2848 4696 1.009060 TCTAAGGTGGGCATAGTGGGA 59.991 52.381 0.00 0.00 0.00 4.37
2849 4697 1.141053 GTCTAAGGTGGGCATAGTGGG 59.859 57.143 0.00 0.00 0.00 4.61
2850 4698 1.837439 TGTCTAAGGTGGGCATAGTGG 59.163 52.381 0.00 0.00 0.00 4.00
2851 4699 3.270877 GTTGTCTAAGGTGGGCATAGTG 58.729 50.000 0.00 0.00 0.00 2.74
2852 4700 2.910319 TGTTGTCTAAGGTGGGCATAGT 59.090 45.455 0.00 0.00 0.00 2.12
2853 4701 3.055094 AGTGTTGTCTAAGGTGGGCATAG 60.055 47.826 0.00 0.00 0.00 2.23
2854 4702 2.910319 AGTGTTGTCTAAGGTGGGCATA 59.090 45.455 0.00 0.00 0.00 3.14
2855 4703 1.705186 AGTGTTGTCTAAGGTGGGCAT 59.295 47.619 0.00 0.00 0.00 4.40
2856 4704 1.071699 GAGTGTTGTCTAAGGTGGGCA 59.928 52.381 0.00 0.00 0.00 5.36
2857 4705 1.071699 TGAGTGTTGTCTAAGGTGGGC 59.928 52.381 0.00 0.00 0.00 5.36
2858 4706 2.550208 GGTGAGTGTTGTCTAAGGTGGG 60.550 54.545 0.00 0.00 0.00 4.61
2859 4707 2.767505 GGTGAGTGTTGTCTAAGGTGG 58.232 52.381 0.00 0.00 0.00 4.61
2860 4708 2.404215 CGGTGAGTGTTGTCTAAGGTG 58.596 52.381 0.00 0.00 0.00 4.00
2861 4709 1.343465 CCGGTGAGTGTTGTCTAAGGT 59.657 52.381 0.00 0.00 0.00 3.50
2862 4710 1.343465 ACCGGTGAGTGTTGTCTAAGG 59.657 52.381 6.12 0.00 0.00 2.69
2863 4711 2.404215 CACCGGTGAGTGTTGTCTAAG 58.596 52.381 31.31 0.00 32.89 2.18
2878 4726 4.322080 AGTACACATGATATCACACCGG 57.678 45.455 7.78 0.00 0.00 5.28
2880 4728 6.985188 AACAAGTACACATGATATCACACC 57.015 37.500 7.78 0.00 0.00 4.16
2958 4813 7.388776 CAGACTTCAGAATTCACACCTTTCATA 59.611 37.037 8.44 0.00 0.00 2.15
2964 4819 4.963318 TCAGACTTCAGAATTCACACCT 57.037 40.909 8.44 0.00 0.00 4.00
2966 4821 9.029243 CATACTATCAGACTTCAGAATTCACAC 57.971 37.037 8.44 0.00 0.00 3.82
2967 4822 8.753133 ACATACTATCAGACTTCAGAATTCACA 58.247 33.333 8.44 0.00 0.00 3.58
2988 4845 7.065085 CCCAAGCTGCATCAATAGTATACATAC 59.935 40.741 5.50 0.00 0.00 2.39
3009 4866 1.956629 ATACTGCCGTCGTCCCCAAG 61.957 60.000 0.00 0.00 0.00 3.61
3010 4867 0.683828 TATACTGCCGTCGTCCCCAA 60.684 55.000 0.00 0.00 0.00 4.12
3012 4869 0.677842 AATATACTGCCGTCGTCCCC 59.322 55.000 0.00 0.00 0.00 4.81
3015 4872 6.147581 TGATAAAGAATATACTGCCGTCGTC 58.852 40.000 0.00 0.00 0.00 4.20
3020 4877 6.726258 TGCATGATAAAGAATATACTGCCG 57.274 37.500 0.00 0.00 0.00 5.69
3022 4879 8.180267 GGTCATGCATGATAAAGAATATACTGC 58.820 37.037 30.89 12.58 39.30 4.40
3023 4880 9.445878 AGGTCATGCATGATAAAGAATATACTG 57.554 33.333 30.89 0.00 39.30 2.74
3025 4882 8.671921 CCAGGTCATGCATGATAAAGAATATAC 58.328 37.037 30.89 14.32 39.30 1.47
3027 4884 7.176165 CACCAGGTCATGCATGATAAAGAATAT 59.824 37.037 30.89 9.29 39.30 1.28
3035 4907 1.212441 TGCACCAGGTCATGCATGATA 59.788 47.619 30.89 8.42 46.63 2.15
3074 4946 6.628919 TCTATGTCAATTTCATCAGCCATG 57.371 37.500 0.00 0.00 0.00 3.66
3075 4947 6.776116 ACATCTATGTCAATTTCATCAGCCAT 59.224 34.615 0.00 0.00 35.87 4.40
3098 4970 1.070134 GCATATCGGCAGGTAGGAACA 59.930 52.381 0.00 0.00 0.00 3.18
3100 4972 1.419381 TGCATATCGGCAGGTAGGAA 58.581 50.000 0.00 0.00 39.25 3.36
3134 5006 7.978982 TCACTGCTGAATTAAATAGCTTTCTC 58.021 34.615 0.00 0.00 38.25 2.87
3156 5028 2.029838 ATCTTGGCGAGTGGAATCAC 57.970 50.000 0.77 0.00 43.93 3.06
3160 5032 1.209504 CCCTTATCTTGGCGAGTGGAA 59.790 52.381 0.77 0.00 0.00 3.53
3185 5057 4.091549 AGTTGCCAGGATCATGAAAATGT 58.908 39.130 9.37 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.