Multiple sequence alignment - TraesCS5D01G499500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G499500 chr5D 100.000 2300 0 0 1 2300 528801758 528804057 0.000000e+00 4248
1 TraesCS5D01G499500 chr5D 87.078 1362 132 18 960 2300 528762184 528763522 0.000000e+00 1500
2 TraesCS5D01G499500 chr5D 86.220 820 103 7 1482 2300 528747799 528748609 0.000000e+00 880
3 TraesCS5D01G499500 chr5D 92.916 367 22 2 960 1323 528745747 528746112 4.350000e-147 531
4 TraesCS5D01G499500 chr5D 93.559 295 19 0 1 295 528791496 528791790 7.540000e-120 440
5 TraesCS5D01G499500 chr5B 90.154 843 35 8 539 1350 665957746 665958571 0.000000e+00 1053
6 TraesCS5D01G499500 chr5B 88.121 825 86 7 1483 2300 665958667 665959486 0.000000e+00 970
7 TraesCS5D01G499500 chr5B 86.303 825 86 12 1483 2300 665939070 665939874 0.000000e+00 872
8 TraesCS5D01G499500 chr5B 87.654 405 36 2 960 1350 665938545 665938949 2.080000e-125 459
9 TraesCS5D01G499500 chr5B 88.750 160 12 1 361 520 665950235 665950388 8.390000e-45 191
10 TraesCS5D01G499500 chr6B 82.346 810 126 13 1500 2300 106509354 106510155 0.000000e+00 688
11 TraesCS5D01G499500 chrUn 81.343 804 133 12 1506 2300 97782359 97783154 2.490000e-179 638
12 TraesCS5D01G499500 chr1D 86.052 466 57 4 1842 2300 476570408 476569944 5.710000e-136 494
13 TraesCS5D01G499500 chr1B 85.622 466 59 4 1842 2300 662843672 662843208 1.240000e-132 483
14 TraesCS5D01G499500 chr1A 81.633 196 36 0 1835 2030 584840466 584840661 1.830000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G499500 chr5D 528801758 528804057 2299 False 4248.0 4248 100.0000 1 2300 1 chr5D.!!$F3 2299
1 TraesCS5D01G499500 chr5D 528762184 528763522 1338 False 1500.0 1500 87.0780 960 2300 1 chr5D.!!$F1 1340
2 TraesCS5D01G499500 chr5D 528745747 528748609 2862 False 705.5 880 89.5680 960 2300 2 chr5D.!!$F4 1340
3 TraesCS5D01G499500 chr5B 665957746 665959486 1740 False 1011.5 1053 89.1375 539 2300 2 chr5B.!!$F3 1761
4 TraesCS5D01G499500 chr5B 665938545 665939874 1329 False 665.5 872 86.9785 960 2300 2 chr5B.!!$F2 1340
5 TraesCS5D01G499500 chr6B 106509354 106510155 801 False 688.0 688 82.3460 1500 2300 1 chr6B.!!$F1 800
6 TraesCS5D01G499500 chrUn 97782359 97783154 795 False 638.0 638 81.3430 1506 2300 1 chrUn.!!$F1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.03213 CCTACTCACGCACACACACT 59.968 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1378 0.403271 ACAAGAGCTGCCCAGAACAT 59.597 50.0 0.0 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.437289 TTGCTATTGAGAATTAATGGCGG 57.563 39.130 0.00 0.00 42.68 6.13
24 25 4.713553 TGCTATTGAGAATTAATGGCGGA 58.286 39.130 0.00 0.00 42.68 5.54
25 26 5.316167 TGCTATTGAGAATTAATGGCGGAT 58.684 37.500 0.00 0.00 42.68 4.18
26 27 5.769662 TGCTATTGAGAATTAATGGCGGATT 59.230 36.000 0.00 0.00 42.68 3.01
27 28 6.088824 GCTATTGAGAATTAATGGCGGATTG 58.911 40.000 0.00 0.00 33.42 2.67
28 29 3.988379 TGAGAATTAATGGCGGATTGC 57.012 42.857 0.00 0.00 45.38 3.56
38 39 3.444657 GCGGATTGCAAGCTATTCG 57.555 52.632 15.27 10.52 45.45 3.34
39 40 0.937304 GCGGATTGCAAGCTATTCGA 59.063 50.000 18.77 0.00 45.45 3.71
40 41 1.070309 GCGGATTGCAAGCTATTCGAG 60.070 52.381 18.77 1.25 45.45 4.04
56 57 5.873179 ATTCGAGCTAAAATTTGAACCGA 57.127 34.783 0.00 0.00 0.00 4.69
57 58 4.921470 TCGAGCTAAAATTTGAACCGAG 57.079 40.909 0.00 0.00 0.00 4.63
58 59 3.682858 TCGAGCTAAAATTTGAACCGAGG 59.317 43.478 0.00 0.00 0.00 4.63
59 60 3.682858 CGAGCTAAAATTTGAACCGAGGA 59.317 43.478 0.00 0.00 0.00 3.71
60 61 4.153475 CGAGCTAAAATTTGAACCGAGGAA 59.847 41.667 0.00 0.00 0.00 3.36
61 62 5.629079 AGCTAAAATTTGAACCGAGGAAG 57.371 39.130 0.00 0.00 0.00 3.46
62 63 4.459337 AGCTAAAATTTGAACCGAGGAAGG 59.541 41.667 0.00 0.00 37.30 3.46
63 64 4.380550 GCTAAAATTTGAACCGAGGAAGGG 60.381 45.833 0.00 0.00 35.02 3.95
64 65 2.215942 AATTTGAACCGAGGAAGGGG 57.784 50.000 0.00 0.00 35.02 4.79
65 66 1.368374 ATTTGAACCGAGGAAGGGGA 58.632 50.000 0.00 0.00 35.02 4.81
66 67 1.368374 TTTGAACCGAGGAAGGGGAT 58.632 50.000 0.00 0.00 35.02 3.85
67 68 0.909623 TTGAACCGAGGAAGGGGATC 59.090 55.000 0.00 0.00 35.02 3.36
68 69 1.327690 TGAACCGAGGAAGGGGATCG 61.328 60.000 0.00 0.00 36.24 3.69
71 72 4.199804 CGAGGAAGGGGATCGGAT 57.800 61.111 0.00 0.00 32.93 4.18
72 73 1.968310 CGAGGAAGGGGATCGGATC 59.032 63.158 9.54 9.54 32.93 3.36
88 89 2.355717 GATCCTATCCAGCTACACGC 57.644 55.000 0.00 0.00 39.57 5.34
89 90 1.613925 GATCCTATCCAGCTACACGCA 59.386 52.381 0.00 0.00 42.61 5.24
90 91 0.744874 TCCTATCCAGCTACACGCAC 59.255 55.000 0.00 0.00 42.61 5.34
91 92 0.459899 CCTATCCAGCTACACGCACA 59.540 55.000 0.00 0.00 42.61 4.57
92 93 1.134818 CCTATCCAGCTACACGCACAA 60.135 52.381 0.00 0.00 42.61 3.33
93 94 2.196749 CTATCCAGCTACACGCACAAG 58.803 52.381 0.00 0.00 42.61 3.16
94 95 1.021390 ATCCAGCTACACGCACAAGC 61.021 55.000 0.00 0.00 42.61 4.01
95 96 2.680913 CCAGCTACACGCACAAGCC 61.681 63.158 0.00 0.00 42.61 4.35
96 97 2.738521 AGCTACACGCACAAGCCG 60.739 61.111 0.00 0.00 42.61 5.52
97 98 3.041940 GCTACACGCACAAGCCGT 61.042 61.111 0.00 0.00 38.92 5.68
112 113 2.583593 CGTGCTCCGGCTTCTAGC 60.584 66.667 5.17 5.17 41.46 3.42
121 122 3.801129 GCTTCTAGCCGTTCTGCC 58.199 61.111 0.00 0.00 34.48 4.85
122 123 1.079127 GCTTCTAGCCGTTCTGCCA 60.079 57.895 0.00 0.00 34.48 4.92
123 124 1.086634 GCTTCTAGCCGTTCTGCCAG 61.087 60.000 0.00 0.00 34.48 4.85
124 125 1.079127 TTCTAGCCGTTCTGCCAGC 60.079 57.895 0.00 0.00 0.00 4.85
125 126 1.826340 TTCTAGCCGTTCTGCCAGCA 61.826 55.000 0.00 0.00 0.00 4.41
126 127 1.153289 CTAGCCGTTCTGCCAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
127 128 1.434622 CTAGCCGTTCTGCCAGCATG 61.435 60.000 0.00 0.00 0.00 4.06
138 139 4.547859 CAGCATGGCCCTACTCAC 57.452 61.111 0.00 0.00 0.00 3.51
139 140 1.522355 CAGCATGGCCCTACTCACG 60.522 63.158 0.00 0.00 0.00 4.35
140 141 2.897350 GCATGGCCCTACTCACGC 60.897 66.667 0.00 0.00 0.00 5.34
141 142 2.584064 CATGGCCCTACTCACGCA 59.416 61.111 0.00 0.00 0.00 5.24
142 143 1.815421 CATGGCCCTACTCACGCAC 60.815 63.158 0.00 0.00 0.00 5.34
143 144 2.290287 ATGGCCCTACTCACGCACA 61.290 57.895 0.00 0.00 0.00 4.57
144 145 2.434359 GGCCCTACTCACGCACAC 60.434 66.667 0.00 0.00 0.00 3.82
145 146 2.342279 GCCCTACTCACGCACACA 59.658 61.111 0.00 0.00 0.00 3.72
146 147 2.027625 GCCCTACTCACGCACACAC 61.028 63.158 0.00 0.00 0.00 3.82
147 148 1.365999 CCCTACTCACGCACACACA 59.634 57.895 0.00 0.00 0.00 3.72
148 149 0.944311 CCCTACTCACGCACACACAC 60.944 60.000 0.00 0.00 0.00 3.82
149 150 0.032130 CCTACTCACGCACACACACT 59.968 55.000 0.00 0.00 0.00 3.55
150 151 1.131771 CTACTCACGCACACACACTG 58.868 55.000 0.00 0.00 0.00 3.66
151 152 0.249280 TACTCACGCACACACACTGG 60.249 55.000 0.00 0.00 0.00 4.00
152 153 1.521457 CTCACGCACACACACTGGT 60.521 57.895 0.00 0.00 0.00 4.00
153 154 1.078778 TCACGCACACACACTGGTT 60.079 52.632 0.00 0.00 0.00 3.67
154 155 0.675208 TCACGCACACACACTGGTTT 60.675 50.000 0.00 0.00 0.00 3.27
155 156 1.010580 CACGCACACACACTGGTTTA 58.989 50.000 0.00 0.00 0.00 2.01
156 157 1.398739 CACGCACACACACTGGTTTAA 59.601 47.619 0.00 0.00 0.00 1.52
157 158 1.668751 ACGCACACACACTGGTTTAAG 59.331 47.619 0.00 0.00 0.00 1.85
158 159 1.668751 CGCACACACACTGGTTTAAGT 59.331 47.619 0.00 0.00 0.00 2.24
159 160 2.867368 CGCACACACACTGGTTTAAGTA 59.133 45.455 0.00 0.00 0.00 2.24
160 161 3.496884 CGCACACACACTGGTTTAAGTAT 59.503 43.478 0.00 0.00 0.00 2.12
161 162 4.377022 CGCACACACACTGGTTTAAGTATC 60.377 45.833 0.00 0.00 0.00 2.24
162 163 4.513692 GCACACACACTGGTTTAAGTATCA 59.486 41.667 0.00 0.00 0.00 2.15
163 164 5.334105 GCACACACACTGGTTTAAGTATCAG 60.334 44.000 0.00 0.00 0.00 2.90
164 165 5.758296 CACACACACTGGTTTAAGTATCAGT 59.242 40.000 0.00 0.00 40.62 3.41
165 166 6.260050 CACACACACTGGTTTAAGTATCAGTT 59.740 38.462 0.00 0.00 38.27 3.16
166 167 7.439955 CACACACACTGGTTTAAGTATCAGTTA 59.560 37.037 0.00 0.00 38.27 2.24
167 168 7.440255 ACACACACTGGTTTAAGTATCAGTTAC 59.560 37.037 0.00 0.00 38.27 2.50
168 169 7.439955 CACACACTGGTTTAAGTATCAGTTACA 59.560 37.037 0.00 0.00 38.27 2.41
169 170 7.656137 ACACACTGGTTTAAGTATCAGTTACAG 59.344 37.037 0.00 0.00 38.27 2.74
170 171 7.656137 CACACTGGTTTAAGTATCAGTTACAGT 59.344 37.037 0.00 0.00 38.27 3.55
171 172 8.018677 CACTGGTTTAAGTATCAGTTACAGTG 57.981 38.462 0.00 0.00 43.76 3.66
172 173 7.959175 ACTGGTTTAAGTATCAGTTACAGTGA 58.041 34.615 0.00 0.00 37.18 3.41
173 174 8.594550 ACTGGTTTAAGTATCAGTTACAGTGAT 58.405 33.333 0.00 0.00 40.99 3.06
181 182 8.172352 AGTATCAGTTACAGTGATATGAGTCC 57.828 38.462 0.00 0.00 41.16 3.85
182 183 7.780271 AGTATCAGTTACAGTGATATGAGTCCA 59.220 37.037 0.00 0.00 41.16 4.02
183 184 7.609097 ATCAGTTACAGTGATATGAGTCCAT 57.391 36.000 0.00 0.00 36.55 3.41
184 185 7.423844 TCAGTTACAGTGATATGAGTCCATT 57.576 36.000 0.00 0.00 34.31 3.16
185 186 7.851228 TCAGTTACAGTGATATGAGTCCATTT 58.149 34.615 0.00 0.00 34.31 2.32
186 187 8.977412 TCAGTTACAGTGATATGAGTCCATTTA 58.023 33.333 0.00 0.00 34.31 1.40
187 188 9.254133 CAGTTACAGTGATATGAGTCCATTTAG 57.746 37.037 0.00 0.00 34.31 1.85
188 189 8.424918 AGTTACAGTGATATGAGTCCATTTAGG 58.575 37.037 0.00 0.00 39.47 2.69
189 190 5.615289 ACAGTGATATGAGTCCATTTAGGC 58.385 41.667 0.00 0.00 37.29 3.93
190 191 4.999950 CAGTGATATGAGTCCATTTAGGCC 59.000 45.833 0.00 0.00 37.29 5.19
191 192 4.042187 AGTGATATGAGTCCATTTAGGCCC 59.958 45.833 0.00 0.00 37.29 5.80
192 193 3.980022 TGATATGAGTCCATTTAGGCCCA 59.020 43.478 0.00 0.00 37.29 5.36
193 194 4.042062 TGATATGAGTCCATTTAGGCCCAG 59.958 45.833 0.00 0.00 37.29 4.45
194 195 0.255890 TGAGTCCATTTAGGCCCAGC 59.744 55.000 0.00 0.00 37.29 4.85
195 196 0.255890 GAGTCCATTTAGGCCCAGCA 59.744 55.000 0.00 0.00 37.29 4.41
196 197 0.704076 AGTCCATTTAGGCCCAGCAA 59.296 50.000 0.00 0.00 37.29 3.91
197 198 1.106285 GTCCATTTAGGCCCAGCAAG 58.894 55.000 0.00 0.00 37.29 4.01
198 199 0.684153 TCCATTTAGGCCCAGCAAGC 60.684 55.000 0.00 0.00 37.29 4.01
205 206 2.827642 GCCCAGCAAGCCTAGCAG 60.828 66.667 0.00 0.00 0.00 4.24
206 207 2.124403 CCCAGCAAGCCTAGCAGG 60.124 66.667 0.00 0.00 38.28 4.85
238 239 4.785453 GACGGGGCCTGGCTGAAG 62.785 72.222 19.68 10.19 0.00 3.02
241 242 3.984732 GGGGCCTGGCTGAAGGTT 61.985 66.667 19.68 0.00 39.75 3.50
242 243 2.677875 GGGCCTGGCTGAAGGTTG 60.678 66.667 19.68 0.00 39.75 3.77
243 244 2.436109 GGCCTGGCTGAAGGTTGA 59.564 61.111 19.68 0.00 39.75 3.18
244 245 1.228552 GGCCTGGCTGAAGGTTGAA 60.229 57.895 19.68 0.00 39.75 2.69
245 246 1.527433 GGCCTGGCTGAAGGTTGAAC 61.527 60.000 19.68 0.00 39.75 3.18
246 247 1.527433 GCCTGGCTGAAGGTTGAACC 61.527 60.000 12.43 6.16 39.75 3.62
257 258 1.809684 GGTTGAACCTCTCTTTCCCG 58.190 55.000 7.20 0.00 34.73 5.14
258 259 1.157585 GTTGAACCTCTCTTTCCCGC 58.842 55.000 0.00 0.00 0.00 6.13
259 260 0.320421 TTGAACCTCTCTTTCCCGCG 60.320 55.000 0.00 0.00 0.00 6.46
260 261 2.047179 AACCTCTCTTTCCCGCGC 60.047 61.111 0.00 0.00 0.00 6.86
261 262 3.607370 AACCTCTCTTTCCCGCGCC 62.607 63.158 0.00 0.00 0.00 6.53
262 263 4.082523 CCTCTCTTTCCCGCGCCA 62.083 66.667 0.00 0.00 0.00 5.69
263 264 2.815647 CTCTCTTTCCCGCGCCAC 60.816 66.667 0.00 0.00 0.00 5.01
264 265 4.388499 TCTCTTTCCCGCGCCACC 62.388 66.667 0.00 0.00 0.00 4.61
265 266 4.394712 CTCTTTCCCGCGCCACCT 62.395 66.667 0.00 0.00 0.00 4.00
266 267 4.697756 TCTTTCCCGCGCCACCTG 62.698 66.667 0.00 0.00 0.00 4.00
268 269 4.572571 TTTCCCGCGCCACCTGTT 62.573 61.111 0.00 0.00 0.00 3.16
274 275 3.730761 GCGCCACCTGTTCAGCTG 61.731 66.667 7.63 7.63 0.00 4.24
275 276 3.052082 CGCCACCTGTTCAGCTGG 61.052 66.667 15.13 9.16 41.41 4.85
276 277 2.431683 GCCACCTGTTCAGCTGGA 59.568 61.111 15.13 0.46 39.25 3.86
277 278 1.673665 GCCACCTGTTCAGCTGGAG 60.674 63.158 15.13 7.57 39.25 3.86
278 279 1.757306 CCACCTGTTCAGCTGGAGT 59.243 57.895 15.13 0.00 39.25 3.85
279 280 0.321122 CCACCTGTTCAGCTGGAGTC 60.321 60.000 15.13 0.00 39.25 3.36
280 281 0.683973 CACCTGTTCAGCTGGAGTCT 59.316 55.000 15.13 0.00 39.25 3.24
281 282 0.972883 ACCTGTTCAGCTGGAGTCTC 59.027 55.000 15.13 0.00 39.25 3.36
282 283 1.265236 CCTGTTCAGCTGGAGTCTCT 58.735 55.000 15.13 0.00 38.33 3.10
283 284 1.622811 CCTGTTCAGCTGGAGTCTCTT 59.377 52.381 15.13 0.00 38.33 2.85
284 285 2.612471 CCTGTTCAGCTGGAGTCTCTTG 60.612 54.545 15.13 0.00 38.33 3.02
285 286 2.298446 CTGTTCAGCTGGAGTCTCTTGA 59.702 50.000 15.13 0.00 0.00 3.02
286 287 2.902486 TGTTCAGCTGGAGTCTCTTGAT 59.098 45.455 15.13 0.00 0.00 2.57
287 288 3.056250 TGTTCAGCTGGAGTCTCTTGATC 60.056 47.826 15.13 0.00 0.00 2.92
288 289 1.747924 TCAGCTGGAGTCTCTTGATCG 59.252 52.381 15.13 0.00 0.00 3.69
289 290 1.476085 CAGCTGGAGTCTCTTGATCGT 59.524 52.381 5.57 0.00 0.00 3.73
290 291 2.094286 CAGCTGGAGTCTCTTGATCGTT 60.094 50.000 5.57 0.00 0.00 3.85
291 292 2.094286 AGCTGGAGTCTCTTGATCGTTG 60.094 50.000 0.00 0.00 0.00 4.10
292 293 2.094494 GCTGGAGTCTCTTGATCGTTGA 60.094 50.000 0.00 0.00 0.00 3.18
293 294 3.506810 CTGGAGTCTCTTGATCGTTGAC 58.493 50.000 0.00 0.00 0.00 3.18
294 295 2.890945 TGGAGTCTCTTGATCGTTGACA 59.109 45.455 0.00 0.00 0.00 3.58
295 296 3.057245 TGGAGTCTCTTGATCGTTGACAG 60.057 47.826 0.00 0.00 0.00 3.51
296 297 3.057174 GGAGTCTCTTGATCGTTGACAGT 60.057 47.826 0.00 0.00 0.00 3.55
297 298 3.906998 AGTCTCTTGATCGTTGACAGTG 58.093 45.455 9.48 0.00 0.00 3.66
298 299 3.570125 AGTCTCTTGATCGTTGACAGTGA 59.430 43.478 0.00 0.00 0.00 3.41
299 300 3.670991 GTCTCTTGATCGTTGACAGTGAC 59.329 47.826 0.00 0.00 0.00 3.67
300 301 2.989840 CTCTTGATCGTTGACAGTGACC 59.010 50.000 0.00 0.00 0.00 4.02
301 302 2.069273 CTTGATCGTTGACAGTGACCC 58.931 52.381 0.00 0.00 0.00 4.46
302 303 1.044611 TGATCGTTGACAGTGACCCA 58.955 50.000 0.00 0.00 0.00 4.51
303 304 1.623311 TGATCGTTGACAGTGACCCAT 59.377 47.619 0.00 0.00 0.00 4.00
304 305 2.829120 TGATCGTTGACAGTGACCCATA 59.171 45.455 0.00 0.00 0.00 2.74
305 306 3.119137 TGATCGTTGACAGTGACCCATAG 60.119 47.826 0.00 0.00 0.00 2.23
306 307 1.067142 TCGTTGACAGTGACCCATAGC 60.067 52.381 0.00 0.00 0.00 2.97
307 308 1.739067 GTTGACAGTGACCCATAGCC 58.261 55.000 0.00 0.00 0.00 3.93
308 309 1.279271 GTTGACAGTGACCCATAGCCT 59.721 52.381 0.00 0.00 0.00 4.58
309 310 0.904649 TGACAGTGACCCATAGCCTG 59.095 55.000 0.00 0.00 0.00 4.85
310 311 0.179000 GACAGTGACCCATAGCCTGG 59.821 60.000 0.00 0.00 45.51 4.45
311 312 0.547712 ACAGTGACCCATAGCCTGGT 60.548 55.000 0.00 0.00 44.30 4.00
312 313 0.107508 CAGTGACCCATAGCCTGGTG 60.108 60.000 0.00 0.00 44.30 4.17
313 314 0.252696 AGTGACCCATAGCCTGGTGA 60.253 55.000 0.00 0.00 44.30 4.02
314 315 0.179000 GTGACCCATAGCCTGGTGAG 59.821 60.000 0.00 0.00 44.30 3.51
315 316 0.982852 TGACCCATAGCCTGGTGAGG 60.983 60.000 0.00 0.00 44.30 3.86
316 317 0.983378 GACCCATAGCCTGGTGAGGT 60.983 60.000 0.00 0.00 44.30 3.85
317 318 1.274703 ACCCATAGCCTGGTGAGGTG 61.275 60.000 0.00 0.00 44.30 4.00
318 319 1.274703 CCCATAGCCTGGTGAGGTGT 61.275 60.000 0.00 0.00 44.30 4.16
319 320 0.179000 CCATAGCCTGGTGAGGTGTC 59.821 60.000 0.00 0.00 42.15 3.67
320 321 0.179100 CATAGCCTGGTGAGGTGTCG 60.179 60.000 0.00 0.00 42.15 4.35
321 322 1.330655 ATAGCCTGGTGAGGTGTCGG 61.331 60.000 0.00 0.00 42.15 4.79
322 323 2.435120 TAGCCTGGTGAGGTGTCGGA 62.435 60.000 0.00 0.00 42.15 4.55
323 324 2.657237 CCTGGTGAGGTGTCGGAC 59.343 66.667 0.00 0.00 34.16 4.79
324 325 2.657237 CTGGTGAGGTGTCGGACC 59.343 66.667 5.55 0.00 46.58 4.46
332 333 4.595538 GTGTCGGACCACGTGGCA 62.596 66.667 34.26 20.38 44.69 4.92
333 334 3.851128 TGTCGGACCACGTGGCAA 61.851 61.111 34.26 14.31 44.69 4.52
334 335 2.358247 GTCGGACCACGTGGCAAT 60.358 61.111 34.26 15.85 44.69 3.56
335 336 2.358125 TCGGACCACGTGGCAATG 60.358 61.111 34.26 20.74 44.69 2.82
336 337 4.101790 CGGACCACGTGGCAATGC 62.102 66.667 34.26 19.10 39.32 3.56
337 338 2.672996 GGACCACGTGGCAATGCT 60.673 61.111 34.26 14.16 39.32 3.79
338 339 2.562912 GACCACGTGGCAATGCTG 59.437 61.111 34.26 8.61 39.32 4.41
339 340 2.981560 GACCACGTGGCAATGCTGG 61.982 63.158 34.26 8.02 39.32 4.85
340 341 2.672651 CCACGTGGCAATGCTGGA 60.673 61.111 24.02 0.00 0.00 3.86
341 342 2.267351 CCACGTGGCAATGCTGGAA 61.267 57.895 24.02 0.00 0.00 3.53
342 343 1.597797 CCACGTGGCAATGCTGGAAT 61.598 55.000 24.02 0.00 0.00 3.01
343 344 0.457166 CACGTGGCAATGCTGGAATG 60.457 55.000 7.95 0.00 0.00 2.67
344 345 1.517694 CGTGGCAATGCTGGAATGC 60.518 57.895 4.82 0.02 39.33 3.56
348 349 3.953201 GCAATGCTGGAATGCCTAC 57.047 52.632 0.00 0.00 34.03 3.18
349 350 1.105457 GCAATGCTGGAATGCCTACA 58.895 50.000 0.00 0.00 34.03 2.74
350 351 1.477700 GCAATGCTGGAATGCCTACAA 59.522 47.619 0.00 0.00 34.03 2.41
351 352 2.094078 GCAATGCTGGAATGCCTACAAA 60.094 45.455 0.00 0.00 34.03 2.83
352 353 3.431207 GCAATGCTGGAATGCCTACAAAT 60.431 43.478 0.00 0.00 34.03 2.32
353 354 4.116961 CAATGCTGGAATGCCTACAAATG 58.883 43.478 0.00 0.00 34.31 2.32
354 355 2.806434 TGCTGGAATGCCTACAAATGT 58.194 42.857 0.00 0.00 34.31 2.71
355 356 3.164268 TGCTGGAATGCCTACAAATGTT 58.836 40.909 0.00 0.00 34.31 2.71
356 357 3.056678 TGCTGGAATGCCTACAAATGTTG 60.057 43.478 0.00 0.00 34.31 3.33
357 358 3.193267 GCTGGAATGCCTACAAATGTTGA 59.807 43.478 0.00 0.00 34.31 3.18
358 359 4.321899 GCTGGAATGCCTACAAATGTTGAA 60.322 41.667 0.00 0.00 34.31 2.69
359 360 5.782047 CTGGAATGCCTACAAATGTTGAAA 58.218 37.500 0.00 0.00 34.31 2.69
360 361 6.357579 TGGAATGCCTACAAATGTTGAAAT 57.642 33.333 0.00 0.00 34.31 2.17
361 362 6.767456 TGGAATGCCTACAAATGTTGAAATT 58.233 32.000 0.00 0.00 34.31 1.82
362 363 7.901029 TGGAATGCCTACAAATGTTGAAATTA 58.099 30.769 0.00 0.00 34.31 1.40
363 364 8.538701 TGGAATGCCTACAAATGTTGAAATTAT 58.461 29.630 0.00 0.00 34.31 1.28
367 368 8.815565 TGCCTACAAATGTTGAAATTATAGGA 57.184 30.769 0.00 0.00 33.87 2.94
368 369 9.420118 TGCCTACAAATGTTGAAATTATAGGAT 57.580 29.630 0.00 0.00 33.87 3.24
369 370 9.683069 GCCTACAAATGTTGAAATTATAGGATG 57.317 33.333 0.00 0.00 33.87 3.51
371 372 9.683069 CTACAAATGTTGAAATTATAGGATGGC 57.317 33.333 0.00 0.00 0.00 4.40
372 373 8.310122 ACAAATGTTGAAATTATAGGATGGCT 57.690 30.769 0.00 0.00 0.00 4.75
373 374 8.199449 ACAAATGTTGAAATTATAGGATGGCTG 58.801 33.333 0.00 0.00 0.00 4.85
374 375 8.415553 CAAATGTTGAAATTATAGGATGGCTGA 58.584 33.333 0.00 0.00 0.00 4.26
375 376 8.537728 AATGTTGAAATTATAGGATGGCTGAA 57.462 30.769 0.00 0.00 0.00 3.02
376 377 8.716674 ATGTTGAAATTATAGGATGGCTGAAT 57.283 30.769 0.00 0.00 0.00 2.57
377 378 9.812347 ATGTTGAAATTATAGGATGGCTGAATA 57.188 29.630 0.00 0.00 0.00 1.75
378 379 9.812347 TGTTGAAATTATAGGATGGCTGAATAT 57.188 29.630 0.00 0.00 0.00 1.28
384 385 8.585471 ATTATAGGATGGCTGAATATTTGTGG 57.415 34.615 0.00 0.00 0.00 4.17
385 386 4.255510 AGGATGGCTGAATATTTGTGGT 57.744 40.909 0.00 0.00 0.00 4.16
386 387 3.956199 AGGATGGCTGAATATTTGTGGTG 59.044 43.478 0.00 0.00 0.00 4.17
387 388 3.701040 GGATGGCTGAATATTTGTGGTGT 59.299 43.478 0.00 0.00 0.00 4.16
388 389 4.887071 GGATGGCTGAATATTTGTGGTGTA 59.113 41.667 0.00 0.00 0.00 2.90
389 390 5.221048 GGATGGCTGAATATTTGTGGTGTAC 60.221 44.000 0.00 0.00 0.00 2.90
390 391 4.917385 TGGCTGAATATTTGTGGTGTACT 58.083 39.130 0.00 0.00 0.00 2.73
391 392 6.056090 TGGCTGAATATTTGTGGTGTACTA 57.944 37.500 0.00 0.00 0.00 1.82
392 393 6.477253 TGGCTGAATATTTGTGGTGTACTAA 58.523 36.000 0.00 0.00 0.00 2.24
393 394 7.116075 TGGCTGAATATTTGTGGTGTACTAAT 58.884 34.615 0.00 0.00 38.15 1.73
394 395 7.282224 TGGCTGAATATTTGTGGTGTACTAATC 59.718 37.037 0.00 0.00 36.41 1.75
395 396 7.499232 GGCTGAATATTTGTGGTGTACTAATCT 59.501 37.037 0.00 0.00 36.41 2.40
396 397 9.542462 GCTGAATATTTGTGGTGTACTAATCTA 57.458 33.333 0.00 0.00 36.41 1.98
400 401 9.623000 AATATTTGTGGTGTACTAATCTAACCC 57.377 33.333 0.00 0.00 36.41 4.11
401 402 6.436738 TTTGTGGTGTACTAATCTAACCCA 57.563 37.500 0.00 0.00 0.00 4.51
402 403 5.410355 TGTGGTGTACTAATCTAACCCAC 57.590 43.478 0.00 0.00 41.11 4.61
403 404 5.088730 TGTGGTGTACTAATCTAACCCACT 58.911 41.667 0.00 0.00 41.27 4.00
404 405 5.544948 TGTGGTGTACTAATCTAACCCACTT 59.455 40.000 0.00 0.00 41.27 3.16
405 406 6.104665 GTGGTGTACTAATCTAACCCACTTC 58.895 44.000 0.00 0.00 38.42 3.01
406 407 5.781306 TGGTGTACTAATCTAACCCACTTCA 59.219 40.000 0.00 0.00 0.00 3.02
407 408 6.270463 TGGTGTACTAATCTAACCCACTTCAA 59.730 38.462 0.00 0.00 0.00 2.69
408 409 6.592994 GGTGTACTAATCTAACCCACTTCAAC 59.407 42.308 0.00 0.00 0.00 3.18
409 410 7.384477 GTGTACTAATCTAACCCACTTCAACT 58.616 38.462 0.00 0.00 0.00 3.16
410 411 7.544915 GTGTACTAATCTAACCCACTTCAACTC 59.455 40.741 0.00 0.00 0.00 3.01
411 412 5.721232 ACTAATCTAACCCACTTCAACTCG 58.279 41.667 0.00 0.00 0.00 4.18
412 413 2.450609 TCTAACCCACTTCAACTCGC 57.549 50.000 0.00 0.00 0.00 5.03
413 414 1.968493 TCTAACCCACTTCAACTCGCT 59.032 47.619 0.00 0.00 0.00 4.93
414 415 2.367567 TCTAACCCACTTCAACTCGCTT 59.632 45.455 0.00 0.00 0.00 4.68
415 416 2.052782 AACCCACTTCAACTCGCTTT 57.947 45.000 0.00 0.00 0.00 3.51
416 417 2.052782 ACCCACTTCAACTCGCTTTT 57.947 45.000 0.00 0.00 0.00 2.27
417 418 3.202829 ACCCACTTCAACTCGCTTTTA 57.797 42.857 0.00 0.00 0.00 1.52
418 419 3.139077 ACCCACTTCAACTCGCTTTTAG 58.861 45.455 0.00 0.00 0.00 1.85
419 420 2.484264 CCCACTTCAACTCGCTTTTAGG 59.516 50.000 0.00 0.00 0.00 2.69
420 421 3.139077 CCACTTCAACTCGCTTTTAGGT 58.861 45.455 0.00 0.00 0.00 3.08
421 422 4.312443 CCACTTCAACTCGCTTTTAGGTA 58.688 43.478 0.00 0.00 0.00 3.08
422 423 4.151867 CCACTTCAACTCGCTTTTAGGTAC 59.848 45.833 0.00 0.00 0.00 3.34
423 424 3.985925 ACTTCAACTCGCTTTTAGGTACG 59.014 43.478 0.00 0.00 0.00 3.67
424 425 2.950433 TCAACTCGCTTTTAGGTACGG 58.050 47.619 0.00 0.00 0.00 4.02
425 426 1.392510 CAACTCGCTTTTAGGTACGGC 59.607 52.381 0.00 0.00 0.00 5.68
426 427 0.893447 ACTCGCTTTTAGGTACGGCT 59.107 50.000 0.00 0.00 0.00 5.52
427 428 1.278238 CTCGCTTTTAGGTACGGCTG 58.722 55.000 0.00 0.00 0.00 4.85
428 429 0.889994 TCGCTTTTAGGTACGGCTGA 59.110 50.000 0.00 0.00 0.00 4.26
429 430 1.135199 TCGCTTTTAGGTACGGCTGAG 60.135 52.381 0.00 0.00 0.00 3.35
430 431 1.007580 GCTTTTAGGTACGGCTGAGC 58.992 55.000 0.00 0.00 0.00 4.26
431 432 1.405661 GCTTTTAGGTACGGCTGAGCT 60.406 52.381 3.72 0.45 0.00 4.09
432 433 2.935676 GCTTTTAGGTACGGCTGAGCTT 60.936 50.000 3.72 0.00 0.00 3.74
433 434 2.667473 TTTAGGTACGGCTGAGCTTC 57.333 50.000 3.72 0.00 0.00 3.86
434 435 1.848652 TTAGGTACGGCTGAGCTTCT 58.151 50.000 3.72 0.00 0.00 2.85
435 436 1.390565 TAGGTACGGCTGAGCTTCTC 58.609 55.000 3.72 0.00 0.00 2.87
436 437 1.226717 GGTACGGCTGAGCTTCTCG 60.227 63.158 3.72 1.26 32.35 4.04
437 438 1.874466 GTACGGCTGAGCTTCTCGC 60.874 63.158 3.72 0.00 39.57 5.03
438 439 2.340328 TACGGCTGAGCTTCTCGCA 61.340 57.895 3.72 0.00 42.61 5.10
439 440 2.271607 TACGGCTGAGCTTCTCGCAG 62.272 60.000 3.72 0.00 44.19 5.18
440 441 2.575993 GGCTGAGCTTCTCGCAGA 59.424 61.111 3.72 0.00 44.12 4.26
441 442 1.079543 GGCTGAGCTTCTCGCAGAA 60.080 57.895 3.72 0.00 44.12 3.02
442 443 1.357991 GGCTGAGCTTCTCGCAGAAC 61.358 60.000 3.72 0.00 44.12 3.01
443 444 0.389687 GCTGAGCTTCTCGCAGAACT 60.390 55.000 0.00 0.00 44.12 3.01
444 445 1.627879 CTGAGCTTCTCGCAGAACTC 58.372 55.000 0.00 14.23 44.12 3.01
445 446 0.961753 TGAGCTTCTCGCAGAACTCA 59.038 50.000 16.94 16.94 42.61 3.41
446 447 1.067985 TGAGCTTCTCGCAGAACTCAG 60.068 52.381 16.94 4.16 42.61 3.35
447 448 1.201181 GAGCTTCTCGCAGAACTCAGA 59.799 52.381 15.18 0.00 42.61 3.27
448 449 1.824230 AGCTTCTCGCAGAACTCAGAT 59.176 47.619 0.00 0.00 42.61 2.90
449 450 2.233431 AGCTTCTCGCAGAACTCAGATT 59.767 45.455 0.00 0.00 42.61 2.40
450 451 2.999355 GCTTCTCGCAGAACTCAGATTT 59.001 45.455 0.00 0.00 38.92 2.17
451 452 4.081972 AGCTTCTCGCAGAACTCAGATTTA 60.082 41.667 0.00 0.00 42.61 1.40
452 453 4.808364 GCTTCTCGCAGAACTCAGATTTAT 59.192 41.667 0.00 0.00 38.92 1.40
453 454 5.980116 GCTTCTCGCAGAACTCAGATTTATA 59.020 40.000 0.00 0.00 38.92 0.98
454 455 6.143758 GCTTCTCGCAGAACTCAGATTTATAG 59.856 42.308 0.00 0.00 38.92 1.31
455 456 6.078202 TCTCGCAGAACTCAGATTTATAGG 57.922 41.667 0.00 0.00 34.09 2.57
456 457 5.594725 TCTCGCAGAACTCAGATTTATAGGT 59.405 40.000 0.00 0.00 34.09 3.08
457 458 5.592054 TCGCAGAACTCAGATTTATAGGTG 58.408 41.667 0.00 0.00 0.00 4.00
458 459 5.127194 TCGCAGAACTCAGATTTATAGGTGT 59.873 40.000 0.00 0.00 0.00 4.16
459 460 5.812642 CGCAGAACTCAGATTTATAGGTGTT 59.187 40.000 0.00 0.00 0.00 3.32
460 461 6.313905 CGCAGAACTCAGATTTATAGGTGTTT 59.686 38.462 0.00 0.00 0.00 2.83
461 462 7.467623 GCAGAACTCAGATTTATAGGTGTTTG 58.532 38.462 0.00 0.00 0.00 2.93
462 463 7.334421 GCAGAACTCAGATTTATAGGTGTTTGA 59.666 37.037 0.00 0.00 0.00 2.69
463 464 9.219603 CAGAACTCAGATTTATAGGTGTTTGAA 57.780 33.333 0.00 0.00 0.00 2.69
464 465 9.965902 AGAACTCAGATTTATAGGTGTTTGAAT 57.034 29.630 0.00 0.00 0.00 2.57
549 550 4.693566 TGTAAAACTGGAATGGAGCTAACG 59.306 41.667 0.00 0.00 0.00 3.18
584 585 4.201940 TGTGCACAACTGAAGAGAAATGTG 60.202 41.667 19.28 0.00 40.72 3.21
586 587 4.274214 TGCACAACTGAAGAGAAATGTGAG 59.726 41.667 7.80 0.00 40.32 3.51
605 606 6.115446 TGTGAGCAAAAGAATGTATAGGGAG 58.885 40.000 0.00 0.00 0.00 4.30
612 613 9.343539 GCAAAAGAATGTATAGGGAGTAGATTT 57.656 33.333 0.00 0.00 0.00 2.17
629 630 8.943594 AGTAGATTTTATAGGTAGTCTCCAGG 57.056 38.462 0.00 0.00 0.00 4.45
638 639 2.290134 GGTAGTCTCCAGGGACCAAAAC 60.290 54.545 0.00 0.00 36.95 2.43
651 652 1.270678 ACCAAAACGCACTCTCCCTAC 60.271 52.381 0.00 0.00 0.00 3.18
664 665 3.617368 CCTACAGGGTGTCGGAGG 58.383 66.667 0.00 0.00 35.42 4.30
665 666 2.722201 CCTACAGGGTGTCGGAGGC 61.722 68.421 0.00 0.00 35.42 4.70
782 783 1.595382 GATGGATGACCGGCGAAGG 60.595 63.158 9.30 0.00 39.42 3.46
792 793 0.529992 CCGGCGAAGGAATGTAGGAC 60.530 60.000 9.30 0.00 0.00 3.85
797 798 2.223735 GCGAAGGAATGTAGGACGATGA 60.224 50.000 0.00 0.00 0.00 2.92
813 814 1.139853 GATGAGAAGACCGAGGGCAAT 59.860 52.381 0.00 0.00 0.00 3.56
845 846 3.280295 ACTCACGACGATTCTGGTCTAT 58.720 45.455 0.00 0.00 32.24 1.98
846 847 4.449131 ACTCACGACGATTCTGGTCTATA 58.551 43.478 0.00 0.00 32.24 1.31
847 848 4.512198 ACTCACGACGATTCTGGTCTATAG 59.488 45.833 0.00 0.00 32.24 1.31
848 849 3.813724 TCACGACGATTCTGGTCTATAGG 59.186 47.826 0.00 0.00 32.24 2.57
849 850 3.564644 CACGACGATTCTGGTCTATAGGT 59.435 47.826 0.00 0.00 32.24 3.08
858 859 3.132289 TCTGGTCTATAGGTTTGCTTCCG 59.868 47.826 0.00 0.00 0.00 4.30
865 866 0.755327 AGGTTTGCTTCCGTTGGCTT 60.755 50.000 0.00 0.00 0.00 4.35
886 887 1.001974 AGCACAGCCGTCAAATACTCA 59.998 47.619 0.00 0.00 0.00 3.41
909 910 1.433837 GCGTTGACGGTTGAACTGGT 61.434 55.000 9.23 0.63 40.23 4.00
911 912 0.661020 GTTGACGGTTGAACTGGTGG 59.339 55.000 9.23 0.00 0.00 4.61
912 913 1.098712 TTGACGGTTGAACTGGTGGC 61.099 55.000 9.23 0.00 0.00 5.01
913 914 2.203294 ACGGTTGAACTGGTGGCC 60.203 61.111 9.23 0.00 0.00 5.36
924 925 2.357593 CTGGTGGCCCAACCTGAACT 62.358 60.000 13.17 0.00 41.27 3.01
1240 1269 4.941263 AGGACGCTATGTATGAGATCTCTC 59.059 45.833 22.95 13.57 43.15 3.20
1308 1347 5.091261 AGGTATGTGACTGAACCAAGATC 57.909 43.478 4.81 0.00 34.29 2.75
1316 1355 6.320926 TGTGACTGAACCAAGATCAAATTTGA 59.679 34.615 22.52 22.52 42.14 2.69
1335 1378 2.368548 TGACCAGTGCTTGAGCTCTAAA 59.631 45.455 16.19 0.28 42.25 1.85
1345 1388 2.991250 TGAGCTCTAAATGTTCTGGGC 58.009 47.619 16.19 0.00 0.00 5.36
1350 1393 2.941720 CTCTAAATGTTCTGGGCAGCTC 59.058 50.000 0.00 0.00 0.00 4.09
1363 1406 2.019984 GGCAGCTCTTGTTGGAATAGG 58.980 52.381 0.00 0.00 0.00 2.57
1367 1410 4.095036 GCAGCTCTTGTTGGAATAGGTAAC 59.905 45.833 0.00 0.00 0.00 2.50
1370 1423 6.375455 CAGCTCTTGTTGGAATAGGTAACAAT 59.625 38.462 0.00 0.00 41.70 2.71
1371 1424 6.948309 AGCTCTTGTTGGAATAGGTAACAATT 59.052 34.615 0.00 0.00 41.70 2.32
1373 1426 8.088365 GCTCTTGTTGGAATAGGTAACAATTTT 58.912 33.333 0.00 0.00 41.70 1.82
1374 1427 9.981114 CTCTTGTTGGAATAGGTAACAATTTTT 57.019 29.630 0.00 0.00 41.70 1.94
1448 1505 1.893137 ACGTCATGCTCACAGTTCCTA 59.107 47.619 0.00 0.00 0.00 2.94
1554 3152 8.429641 TGTATTATCTTATTCCCAGAACTGTCC 58.570 37.037 1.18 0.00 0.00 4.02
1556 3154 5.983333 ATCTTATTCCCAGAACTGTCCAT 57.017 39.130 1.18 0.00 0.00 3.41
1600 3198 9.478019 GAACATCAAAGTGTACGATAAAATCAG 57.522 33.333 0.00 0.00 0.00 2.90
1633 3231 1.975660 TTGCAGTGGTACCCTCAAAC 58.024 50.000 10.07 0.00 0.00 2.93
1634 3232 0.840617 TGCAGTGGTACCCTCAAACA 59.159 50.000 10.07 0.00 0.00 2.83
1636 3234 1.607148 GCAGTGGTACCCTCAAACAAC 59.393 52.381 10.07 0.00 0.00 3.32
1643 3241 3.002965 GGTACCCTCAAACAACTGTTTCG 59.997 47.826 0.00 2.54 45.54 3.46
1673 3271 7.322664 TGAAAATGGCCAATAAGATGAAGAAC 58.677 34.615 10.96 0.00 0.00 3.01
1735 3333 5.591099 TCCTTTCACTTTCATGCAAGAAAC 58.409 37.500 12.82 0.00 34.11 2.78
1758 3356 2.259818 CTCGCGTGCAGGAAGTCT 59.740 61.111 11.29 0.00 0.00 3.24
1798 3396 3.414700 GGCTGTGACGGAAGCACG 61.415 66.667 0.00 0.00 41.36 5.34
1844 3442 2.489329 ACTGGAAATCATGGCTCGTTTG 59.511 45.455 0.00 0.00 0.00 2.93
1940 3538 5.572896 GGCACAATTAGTTTTCAAGGATTCG 59.427 40.000 0.00 0.00 0.00 3.34
1941 3539 5.572896 GCACAATTAGTTTTCAAGGATTCGG 59.427 40.000 0.00 0.00 0.00 4.30
2046 3645 7.712639 CACAACTATCCAATAGCAATAGTCAGT 59.287 37.037 0.00 0.00 35.66 3.41
2086 3685 7.441890 TGATAGAAAATAACCTTCAAACGCA 57.558 32.000 0.00 0.00 0.00 5.24
2095 3694 1.676006 CCTTCAAACGCACCTTTCTGT 59.324 47.619 0.00 0.00 0.00 3.41
2102 3701 3.349488 ACGCACCTTTCTGTTAAAAGC 57.651 42.857 0.00 0.00 35.37 3.51
2141 3740 2.660064 CCTGTGGGAGAGGGAACCG 61.660 68.421 0.00 0.00 46.01 4.44
2195 3794 1.351017 CTGGGTGAAGGGAGCAAAGTA 59.649 52.381 0.00 0.00 0.00 2.24
2234 3833 6.018016 CCACACGAGATGAATATATTGCACAA 60.018 38.462 1.78 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.239306 TCCGCCATTAATTCTCAATAGCAAG 59.761 40.000 0.00 0.00 0.00 4.01
1 2 5.129634 TCCGCCATTAATTCTCAATAGCAA 58.870 37.500 0.00 0.00 0.00 3.91
2 3 4.713553 TCCGCCATTAATTCTCAATAGCA 58.286 39.130 0.00 0.00 0.00 3.49
3 4 5.886960 ATCCGCCATTAATTCTCAATAGC 57.113 39.130 0.00 0.00 0.00 2.97
4 5 6.088824 GCAATCCGCCATTAATTCTCAATAG 58.911 40.000 0.00 0.00 32.94 1.73
5 6 5.534278 TGCAATCCGCCATTAATTCTCAATA 59.466 36.000 0.00 0.00 41.33 1.90
6 7 4.341806 TGCAATCCGCCATTAATTCTCAAT 59.658 37.500 0.00 0.00 41.33 2.57
7 8 3.698539 TGCAATCCGCCATTAATTCTCAA 59.301 39.130 0.00 0.00 41.33 3.02
8 9 3.286353 TGCAATCCGCCATTAATTCTCA 58.714 40.909 0.00 0.00 41.33 3.27
9 10 3.988379 TGCAATCCGCCATTAATTCTC 57.012 42.857 0.00 0.00 41.33 2.87
10 11 3.491447 GCTTGCAATCCGCCATTAATTCT 60.491 43.478 0.00 0.00 41.33 2.40
11 12 2.796593 GCTTGCAATCCGCCATTAATTC 59.203 45.455 0.00 0.00 41.33 2.17
12 13 2.431782 AGCTTGCAATCCGCCATTAATT 59.568 40.909 0.00 0.00 41.33 1.40
13 14 2.034124 AGCTTGCAATCCGCCATTAAT 58.966 42.857 0.00 0.00 41.33 1.40
14 15 1.473258 AGCTTGCAATCCGCCATTAA 58.527 45.000 0.00 0.00 41.33 1.40
15 16 2.340210 TAGCTTGCAATCCGCCATTA 57.660 45.000 0.00 0.00 41.33 1.90
16 17 1.696063 ATAGCTTGCAATCCGCCATT 58.304 45.000 0.00 0.00 41.33 3.16
17 18 1.610522 GAATAGCTTGCAATCCGCCAT 59.389 47.619 0.00 0.00 41.33 4.40
18 19 1.024271 GAATAGCTTGCAATCCGCCA 58.976 50.000 0.00 0.00 41.33 5.69
19 20 0.040958 CGAATAGCTTGCAATCCGCC 60.041 55.000 0.00 0.00 41.33 6.13
20 21 0.937304 TCGAATAGCTTGCAATCCGC 59.063 50.000 0.00 0.00 42.89 5.54
21 22 2.937994 CTCGAATAGCTTGCAATCCG 57.062 50.000 0.00 0.00 0.00 4.18
32 33 7.000575 TCGGTTCAAATTTTAGCTCGAATAG 57.999 36.000 0.00 0.00 0.00 1.73
33 34 6.036735 CCTCGGTTCAAATTTTAGCTCGAATA 59.963 38.462 0.00 0.00 0.00 1.75
34 35 5.163754 CCTCGGTTCAAATTTTAGCTCGAAT 60.164 40.000 0.00 0.00 0.00 3.34
35 36 4.153475 CCTCGGTTCAAATTTTAGCTCGAA 59.847 41.667 0.00 0.00 0.00 3.71
36 37 3.682858 CCTCGGTTCAAATTTTAGCTCGA 59.317 43.478 0.00 0.00 0.00 4.04
37 38 3.682858 TCCTCGGTTCAAATTTTAGCTCG 59.317 43.478 0.00 0.00 0.00 5.03
38 39 5.392057 CCTTCCTCGGTTCAAATTTTAGCTC 60.392 44.000 0.00 0.00 0.00 4.09
39 40 4.459337 CCTTCCTCGGTTCAAATTTTAGCT 59.541 41.667 0.00 0.00 0.00 3.32
40 41 4.380550 CCCTTCCTCGGTTCAAATTTTAGC 60.381 45.833 0.00 0.00 0.00 3.09
41 42 4.157840 CCCCTTCCTCGGTTCAAATTTTAG 59.842 45.833 0.00 0.00 0.00 1.85
42 43 4.083565 CCCCTTCCTCGGTTCAAATTTTA 58.916 43.478 0.00 0.00 0.00 1.52
43 44 2.897326 CCCCTTCCTCGGTTCAAATTTT 59.103 45.455 0.00 0.00 0.00 1.82
44 45 2.109304 TCCCCTTCCTCGGTTCAAATTT 59.891 45.455 0.00 0.00 0.00 1.82
45 46 1.708551 TCCCCTTCCTCGGTTCAAATT 59.291 47.619 0.00 0.00 0.00 1.82
46 47 1.368374 TCCCCTTCCTCGGTTCAAAT 58.632 50.000 0.00 0.00 0.00 2.32
47 48 1.280998 GATCCCCTTCCTCGGTTCAAA 59.719 52.381 0.00 0.00 0.00 2.69
48 49 0.909623 GATCCCCTTCCTCGGTTCAA 59.090 55.000 0.00 0.00 0.00 2.69
49 50 1.327690 CGATCCCCTTCCTCGGTTCA 61.328 60.000 0.00 0.00 0.00 3.18
50 51 1.442148 CGATCCCCTTCCTCGGTTC 59.558 63.158 0.00 0.00 0.00 3.62
51 52 2.064581 CCGATCCCCTTCCTCGGTT 61.065 63.158 2.18 0.00 45.30 4.44
52 53 2.444140 CCGATCCCCTTCCTCGGT 60.444 66.667 2.18 0.00 45.30 4.69
54 55 1.536943 GGATCCGATCCCCTTCCTCG 61.537 65.000 15.75 0.00 43.88 4.63
55 56 2.367529 GGATCCGATCCCCTTCCTC 58.632 63.158 15.75 0.00 43.88 3.71
56 57 4.650085 GGATCCGATCCCCTTCCT 57.350 61.111 15.75 0.00 43.88 3.36
67 68 4.586815 GCGTGTAGCTGGATAGGATCCG 62.587 59.091 5.98 0.00 44.25 4.18
68 69 1.067495 GCGTGTAGCTGGATAGGATCC 60.067 57.143 2.48 2.48 42.65 3.36
69 70 2.355717 GCGTGTAGCTGGATAGGATC 57.644 55.000 0.00 0.00 44.04 3.36
80 81 3.295228 CACGGCTTGTGCGTGTAGC 62.295 63.158 0.00 0.00 42.70 3.58
81 82 2.853210 CACGGCTTGTGCGTGTAG 59.147 61.111 0.00 0.00 42.70 2.74
95 96 2.583593 GCTAGAAGCCGGAGCACG 60.584 66.667 5.05 0.00 43.56 5.34
104 105 1.079127 TGGCAGAACGGCTAGAAGC 60.079 57.895 0.00 0.00 41.89 3.86
105 106 1.086634 GCTGGCAGAACGGCTAGAAG 61.087 60.000 20.86 0.00 44.26 2.85
106 107 1.079127 GCTGGCAGAACGGCTAGAA 60.079 57.895 20.86 0.00 44.26 2.10
107 108 1.617018 ATGCTGGCAGAACGGCTAGA 61.617 55.000 20.86 1.18 44.26 2.43
108 109 1.153289 ATGCTGGCAGAACGGCTAG 60.153 57.895 20.86 6.04 44.32 3.42
109 110 1.450134 CATGCTGGCAGAACGGCTA 60.450 57.895 20.86 0.00 43.17 3.93
110 111 2.749044 CATGCTGGCAGAACGGCT 60.749 61.111 20.86 0.00 43.17 5.52
111 112 3.818787 CCATGCTGGCAGAACGGC 61.819 66.667 20.86 3.24 43.06 5.68
120 121 1.153086 GTGAGTAGGGCCATGCTGG 60.153 63.158 14.31 0.00 41.55 4.85
121 122 1.522355 CGTGAGTAGGGCCATGCTG 60.522 63.158 14.31 0.00 0.00 4.41
122 123 2.903357 CGTGAGTAGGGCCATGCT 59.097 61.111 8.05 8.05 0.00 3.79
123 124 2.897350 GCGTGAGTAGGGCCATGC 60.897 66.667 6.18 0.00 38.01 4.06
124 125 1.815421 GTGCGTGAGTAGGGCCATG 60.815 63.158 6.18 0.00 0.00 3.66
125 126 2.290287 TGTGCGTGAGTAGGGCCAT 61.290 57.895 6.18 0.00 0.00 4.40
126 127 2.920384 TGTGCGTGAGTAGGGCCA 60.920 61.111 6.18 0.00 0.00 5.36
127 128 2.434359 GTGTGCGTGAGTAGGGCC 60.434 66.667 0.00 0.00 0.00 5.80
128 129 2.027625 GTGTGTGCGTGAGTAGGGC 61.028 63.158 0.00 0.00 0.00 5.19
129 130 0.944311 GTGTGTGTGCGTGAGTAGGG 60.944 60.000 0.00 0.00 0.00 3.53
130 131 0.032130 AGTGTGTGTGCGTGAGTAGG 59.968 55.000 0.00 0.00 0.00 3.18
131 132 1.131771 CAGTGTGTGTGCGTGAGTAG 58.868 55.000 0.00 0.00 0.00 2.57
132 133 0.249280 CCAGTGTGTGTGCGTGAGTA 60.249 55.000 0.00 0.00 0.00 2.59
133 134 1.521457 CCAGTGTGTGTGCGTGAGT 60.521 57.895 0.00 0.00 0.00 3.41
134 135 1.089481 AACCAGTGTGTGTGCGTGAG 61.089 55.000 0.00 0.00 0.00 3.51
135 136 0.675208 AAACCAGTGTGTGTGCGTGA 60.675 50.000 0.00 0.00 0.00 4.35
136 137 1.010580 TAAACCAGTGTGTGTGCGTG 58.989 50.000 0.00 0.00 0.00 5.34
137 138 1.668751 CTTAAACCAGTGTGTGTGCGT 59.331 47.619 0.00 0.00 0.00 5.24
138 139 1.668751 ACTTAAACCAGTGTGTGTGCG 59.331 47.619 0.00 0.00 0.00 5.34
139 140 4.513692 TGATACTTAAACCAGTGTGTGTGC 59.486 41.667 0.00 0.00 0.00 4.57
140 141 5.758296 ACTGATACTTAAACCAGTGTGTGTG 59.242 40.000 0.00 0.00 38.32 3.82
141 142 5.925509 ACTGATACTTAAACCAGTGTGTGT 58.074 37.500 0.00 0.00 38.32 3.72
142 143 6.861065 AACTGATACTTAAACCAGTGTGTG 57.139 37.500 0.00 0.00 39.52 3.82
143 144 7.502696 TGTAACTGATACTTAAACCAGTGTGT 58.497 34.615 0.00 0.00 39.52 3.72
144 145 7.656137 ACTGTAACTGATACTTAAACCAGTGTG 59.344 37.037 0.00 0.00 39.52 3.82
145 146 7.656137 CACTGTAACTGATACTTAAACCAGTGT 59.344 37.037 0.00 0.00 39.52 3.55
146 147 7.870954 TCACTGTAACTGATACTTAAACCAGTG 59.129 37.037 0.00 0.00 39.52 3.66
147 148 7.959175 TCACTGTAACTGATACTTAAACCAGT 58.041 34.615 0.00 0.00 41.14 4.00
155 156 8.634444 GGACTCATATCACTGTAACTGATACTT 58.366 37.037 0.00 0.00 34.23 2.24
156 157 7.780271 TGGACTCATATCACTGTAACTGATACT 59.220 37.037 0.00 0.00 34.23 2.12
157 158 7.941919 TGGACTCATATCACTGTAACTGATAC 58.058 38.462 0.00 0.00 34.23 2.24
158 159 8.712228 ATGGACTCATATCACTGTAACTGATA 57.288 34.615 0.00 0.00 35.55 2.15
159 160 7.609097 ATGGACTCATATCACTGTAACTGAT 57.391 36.000 0.00 0.00 32.91 2.90
160 161 7.423844 AATGGACTCATATCACTGTAACTGA 57.576 36.000 0.00 0.00 32.44 3.41
161 162 9.254133 CTAAATGGACTCATATCACTGTAACTG 57.746 37.037 0.00 0.00 32.44 3.16
162 163 8.424918 CCTAAATGGACTCATATCACTGTAACT 58.575 37.037 0.00 0.00 38.35 2.24
163 164 7.171678 GCCTAAATGGACTCATATCACTGTAAC 59.828 40.741 0.00 0.00 38.35 2.50
164 165 7.217200 GCCTAAATGGACTCATATCACTGTAA 58.783 38.462 0.00 0.00 38.35 2.41
165 166 6.239600 GGCCTAAATGGACTCATATCACTGTA 60.240 42.308 0.00 0.00 41.93 2.74
166 167 5.455326 GGCCTAAATGGACTCATATCACTGT 60.455 44.000 0.00 0.00 41.93 3.55
167 168 4.999950 GGCCTAAATGGACTCATATCACTG 59.000 45.833 0.00 0.00 41.93 3.66
168 169 4.042187 GGGCCTAAATGGACTCATATCACT 59.958 45.833 0.84 0.00 45.52 3.41
169 170 4.202461 TGGGCCTAAATGGACTCATATCAC 60.202 45.833 4.53 0.00 45.52 3.06
170 171 3.980022 TGGGCCTAAATGGACTCATATCA 59.020 43.478 4.53 0.00 45.52 2.15
171 172 4.583871 CTGGGCCTAAATGGACTCATATC 58.416 47.826 4.53 0.00 45.52 1.63
172 173 3.245052 GCTGGGCCTAAATGGACTCATAT 60.245 47.826 4.53 0.00 45.52 1.78
173 174 2.106511 GCTGGGCCTAAATGGACTCATA 59.893 50.000 4.53 0.00 45.52 2.15
174 175 1.133668 GCTGGGCCTAAATGGACTCAT 60.134 52.381 4.53 0.00 45.52 2.90
175 176 0.255890 GCTGGGCCTAAATGGACTCA 59.744 55.000 4.53 0.00 45.52 3.41
176 177 0.255890 TGCTGGGCCTAAATGGACTC 59.744 55.000 4.53 0.00 45.52 3.36
177 178 0.704076 TTGCTGGGCCTAAATGGACT 59.296 50.000 4.53 0.00 45.52 3.85
178 179 1.106285 CTTGCTGGGCCTAAATGGAC 58.894 55.000 4.53 0.00 45.48 4.02
179 180 0.684153 GCTTGCTGGGCCTAAATGGA 60.684 55.000 4.53 0.00 38.35 3.41
180 181 1.679559 GGCTTGCTGGGCCTAAATGG 61.680 60.000 4.53 0.00 45.57 3.16
181 182 1.818555 GGCTTGCTGGGCCTAAATG 59.181 57.895 4.53 0.00 45.57 2.32
182 183 4.362479 GGCTTGCTGGGCCTAAAT 57.638 55.556 4.53 0.00 45.57 1.40
188 189 2.827642 CTGCTAGGCTTGCTGGGC 60.828 66.667 20.97 4.30 0.00 5.36
189 190 2.124403 CCTGCTAGGCTTGCTGGG 60.124 66.667 29.64 22.39 43.07 4.45
221 222 4.785453 CTTCAGCCAGGCCCCGTC 62.785 72.222 8.22 0.00 0.00 4.79
224 225 3.984732 AACCTTCAGCCAGGCCCC 61.985 66.667 8.22 0.00 37.47 5.80
225 226 2.677875 CAACCTTCAGCCAGGCCC 60.678 66.667 8.22 0.00 37.47 5.80
226 227 1.228552 TTCAACCTTCAGCCAGGCC 60.229 57.895 8.22 0.00 37.47 5.19
227 228 1.527433 GGTTCAACCTTCAGCCAGGC 61.527 60.000 1.84 1.84 37.47 4.85
228 229 2.646121 GGTTCAACCTTCAGCCAGG 58.354 57.895 0.00 0.00 40.23 4.45
238 239 1.809684 CGGGAAAGAGAGGTTCAACC 58.190 55.000 0.00 0.00 38.99 3.77
239 240 1.157585 GCGGGAAAGAGAGGTTCAAC 58.842 55.000 0.00 0.00 0.00 3.18
240 241 0.320421 CGCGGGAAAGAGAGGTTCAA 60.320 55.000 0.00 0.00 0.00 2.69
241 242 1.292223 CGCGGGAAAGAGAGGTTCA 59.708 57.895 0.00 0.00 0.00 3.18
242 243 2.101233 GCGCGGGAAAGAGAGGTTC 61.101 63.158 8.83 0.00 0.00 3.62
243 244 2.047179 GCGCGGGAAAGAGAGGTT 60.047 61.111 8.83 0.00 0.00 3.50
244 245 4.083862 GGCGCGGGAAAGAGAGGT 62.084 66.667 8.83 0.00 0.00 3.85
245 246 4.082523 TGGCGCGGGAAAGAGAGG 62.083 66.667 8.83 0.00 0.00 3.69
246 247 2.815647 GTGGCGCGGGAAAGAGAG 60.816 66.667 8.83 0.00 0.00 3.20
247 248 4.388499 GGTGGCGCGGGAAAGAGA 62.388 66.667 8.83 0.00 0.00 3.10
248 249 4.394712 AGGTGGCGCGGGAAAGAG 62.395 66.667 8.83 0.00 0.00 2.85
249 250 4.697756 CAGGTGGCGCGGGAAAGA 62.698 66.667 8.83 0.00 0.00 2.52
251 252 4.572571 AACAGGTGGCGCGGGAAA 62.573 61.111 8.83 0.00 0.00 3.13
262 263 0.972883 GAGACTCCAGCTGAACAGGT 59.027 55.000 17.39 6.01 40.20 4.00
263 264 1.265236 AGAGACTCCAGCTGAACAGG 58.735 55.000 17.39 0.00 0.00 4.00
264 265 2.298446 TCAAGAGACTCCAGCTGAACAG 59.702 50.000 17.39 10.43 0.00 3.16
265 266 2.319844 TCAAGAGACTCCAGCTGAACA 58.680 47.619 17.39 0.00 0.00 3.18
266 267 3.520569 GATCAAGAGACTCCAGCTGAAC 58.479 50.000 17.39 3.30 0.00 3.18
267 268 2.165234 CGATCAAGAGACTCCAGCTGAA 59.835 50.000 17.39 0.00 0.00 3.02
268 269 1.747924 CGATCAAGAGACTCCAGCTGA 59.252 52.381 17.39 0.00 0.00 4.26
269 270 1.476085 ACGATCAAGAGACTCCAGCTG 59.524 52.381 6.78 6.78 0.00 4.24
270 271 1.846007 ACGATCAAGAGACTCCAGCT 58.154 50.000 0.00 0.00 0.00 4.24
271 272 2.094494 TCAACGATCAAGAGACTCCAGC 60.094 50.000 0.00 0.00 0.00 4.85
272 273 3.057245 TGTCAACGATCAAGAGACTCCAG 60.057 47.826 0.00 0.00 0.00 3.86
273 274 2.890945 TGTCAACGATCAAGAGACTCCA 59.109 45.455 0.00 0.00 0.00 3.86
274 275 3.057174 ACTGTCAACGATCAAGAGACTCC 60.057 47.826 0.00 0.00 0.00 3.85
275 276 3.917380 CACTGTCAACGATCAAGAGACTC 59.083 47.826 0.00 0.00 0.00 3.36
276 277 3.570125 TCACTGTCAACGATCAAGAGACT 59.430 43.478 0.00 0.00 0.00 3.24
277 278 3.670991 GTCACTGTCAACGATCAAGAGAC 59.329 47.826 0.00 0.00 0.00 3.36
278 279 3.305403 GGTCACTGTCAACGATCAAGAGA 60.305 47.826 0.00 0.00 0.00 3.10
279 280 2.989840 GGTCACTGTCAACGATCAAGAG 59.010 50.000 0.00 0.00 0.00 2.85
280 281 2.288825 GGGTCACTGTCAACGATCAAGA 60.289 50.000 0.00 0.00 0.00 3.02
281 282 2.069273 GGGTCACTGTCAACGATCAAG 58.931 52.381 0.00 0.00 0.00 3.02
282 283 1.414550 TGGGTCACTGTCAACGATCAA 59.585 47.619 0.00 0.00 0.00 2.57
283 284 1.044611 TGGGTCACTGTCAACGATCA 58.955 50.000 0.00 0.00 0.00 2.92
284 285 2.386661 ATGGGTCACTGTCAACGATC 57.613 50.000 0.00 0.00 0.00 3.69
285 286 2.418746 GCTATGGGTCACTGTCAACGAT 60.419 50.000 0.00 0.00 0.00 3.73
286 287 1.067142 GCTATGGGTCACTGTCAACGA 60.067 52.381 0.00 0.00 0.00 3.85
287 288 1.359848 GCTATGGGTCACTGTCAACG 58.640 55.000 0.00 0.00 0.00 4.10
288 289 1.279271 AGGCTATGGGTCACTGTCAAC 59.721 52.381 0.00 0.00 0.00 3.18
289 290 1.278985 CAGGCTATGGGTCACTGTCAA 59.721 52.381 0.00 0.00 0.00 3.18
290 291 0.904649 CAGGCTATGGGTCACTGTCA 59.095 55.000 0.00 0.00 0.00 3.58
291 292 0.179000 CCAGGCTATGGGTCACTGTC 59.821 60.000 0.95 0.00 46.36 3.51
292 293 2.300996 CCAGGCTATGGGTCACTGT 58.699 57.895 0.95 0.00 46.36 3.55
301 302 0.179100 CGACACCTCACCAGGCTATG 60.179 60.000 0.00 0.00 45.05 2.23
302 303 1.330655 CCGACACCTCACCAGGCTAT 61.331 60.000 0.00 0.00 45.05 2.97
303 304 1.982395 CCGACACCTCACCAGGCTA 60.982 63.158 0.00 0.00 45.05 3.93
304 305 3.314331 CCGACACCTCACCAGGCT 61.314 66.667 0.00 0.00 45.05 4.58
305 306 3.311110 TCCGACACCTCACCAGGC 61.311 66.667 0.00 0.00 45.05 4.85
306 307 2.657237 GTCCGACACCTCACCAGG 59.343 66.667 0.00 0.00 46.87 4.45
307 308 2.207229 TGGTCCGACACCTCACCAG 61.207 63.158 0.00 0.00 46.98 4.00
308 309 2.123208 TGGTCCGACACCTCACCA 60.123 61.111 0.00 0.00 46.98 4.17
309 310 2.342648 GTGGTCCGACACCTCACC 59.657 66.667 0.00 0.00 46.98 4.02
310 311 2.049433 CGTGGTCCGACACCTCAC 60.049 66.667 0.00 0.00 46.98 3.51
311 312 2.520020 ACGTGGTCCGACACCTCA 60.520 61.111 0.00 0.00 46.98 3.86
312 313 2.049433 CACGTGGTCCGACACCTC 60.049 66.667 7.95 1.21 46.98 3.85
313 314 3.612681 CCACGTGGTCCGACACCT 61.613 66.667 26.95 0.00 46.98 4.00
315 316 4.595538 TGCCACGTGGTCCGACAC 62.596 66.667 33.92 16.89 40.70 3.67
316 317 3.171828 ATTGCCACGTGGTCCGACA 62.172 57.895 33.92 20.75 40.70 4.35
317 318 2.358247 ATTGCCACGTGGTCCGAC 60.358 61.111 33.92 18.34 40.70 4.79
318 319 2.358125 CATTGCCACGTGGTCCGA 60.358 61.111 33.92 19.28 40.70 4.55
319 320 4.101790 GCATTGCCACGTGGTCCG 62.102 66.667 33.92 20.90 44.03 4.79
320 321 2.672996 AGCATTGCCACGTGGTCC 60.673 61.111 33.92 19.82 37.57 4.46
321 322 2.562912 CAGCATTGCCACGTGGTC 59.437 61.111 33.92 25.53 37.57 4.02
322 323 2.974692 TTCCAGCATTGCCACGTGGT 62.975 55.000 33.92 13.66 37.57 4.16
323 324 1.597797 ATTCCAGCATTGCCACGTGG 61.598 55.000 30.66 30.66 38.53 4.94
324 325 0.457166 CATTCCAGCATTGCCACGTG 60.457 55.000 9.08 9.08 0.00 4.49
325 326 1.885157 CATTCCAGCATTGCCACGT 59.115 52.632 4.70 0.00 0.00 4.49
326 327 1.517694 GCATTCCAGCATTGCCACG 60.518 57.895 4.70 0.00 0.00 4.94
327 328 4.507879 GCATTCCAGCATTGCCAC 57.492 55.556 4.70 0.00 0.00 5.01
330 331 1.105457 TGTAGGCATTCCAGCATTGC 58.895 50.000 0.00 0.00 35.83 3.56
331 332 3.872511 TTTGTAGGCATTCCAGCATTG 57.127 42.857 0.00 0.00 35.83 2.82
332 333 3.770933 ACATTTGTAGGCATTCCAGCATT 59.229 39.130 0.00 0.00 35.83 3.56
333 334 3.368248 ACATTTGTAGGCATTCCAGCAT 58.632 40.909 0.00 0.00 35.83 3.79
334 335 2.806434 ACATTTGTAGGCATTCCAGCA 58.194 42.857 0.00 0.00 35.83 4.41
335 336 3.193267 TCAACATTTGTAGGCATTCCAGC 59.807 43.478 0.00 0.00 33.74 4.85
336 337 5.389859 TTCAACATTTGTAGGCATTCCAG 57.610 39.130 0.00 0.00 33.74 3.86
337 338 5.798125 TTTCAACATTTGTAGGCATTCCA 57.202 34.783 0.00 0.00 33.74 3.53
338 339 8.947055 ATAATTTCAACATTTGTAGGCATTCC 57.053 30.769 0.00 0.00 0.00 3.01
341 342 9.420118 TCCTATAATTTCAACATTTGTAGGCAT 57.580 29.630 0.00 0.00 30.54 4.40
342 343 8.815565 TCCTATAATTTCAACATTTGTAGGCA 57.184 30.769 0.00 0.00 30.54 4.75
343 344 9.683069 CATCCTATAATTTCAACATTTGTAGGC 57.317 33.333 0.00 0.00 30.54 3.93
345 346 9.683069 GCCATCCTATAATTTCAACATTTGTAG 57.317 33.333 0.00 0.00 0.00 2.74
346 347 9.420118 AGCCATCCTATAATTTCAACATTTGTA 57.580 29.630 0.00 0.00 0.00 2.41
347 348 8.199449 CAGCCATCCTATAATTTCAACATTTGT 58.801 33.333 0.00 0.00 0.00 2.83
348 349 8.415553 TCAGCCATCCTATAATTTCAACATTTG 58.584 33.333 0.00 0.00 0.00 2.32
349 350 8.537728 TCAGCCATCCTATAATTTCAACATTT 57.462 30.769 0.00 0.00 0.00 2.32
350 351 8.537728 TTCAGCCATCCTATAATTTCAACATT 57.462 30.769 0.00 0.00 0.00 2.71
351 352 8.716674 ATTCAGCCATCCTATAATTTCAACAT 57.283 30.769 0.00 0.00 0.00 2.71
352 353 9.812347 ATATTCAGCCATCCTATAATTTCAACA 57.188 29.630 0.00 0.00 0.00 3.33
358 359 9.028284 CCACAAATATTCAGCCATCCTATAATT 57.972 33.333 0.00 0.00 0.00 1.40
359 360 8.172741 ACCACAAATATTCAGCCATCCTATAAT 58.827 33.333 0.00 0.00 0.00 1.28
360 361 7.448161 CACCACAAATATTCAGCCATCCTATAA 59.552 37.037 0.00 0.00 0.00 0.98
361 362 6.942005 CACCACAAATATTCAGCCATCCTATA 59.058 38.462 0.00 0.00 0.00 1.31
362 363 5.771666 CACCACAAATATTCAGCCATCCTAT 59.228 40.000 0.00 0.00 0.00 2.57
363 364 5.132502 CACCACAAATATTCAGCCATCCTA 58.867 41.667 0.00 0.00 0.00 2.94
364 365 3.956199 CACCACAAATATTCAGCCATCCT 59.044 43.478 0.00 0.00 0.00 3.24
365 366 3.701040 ACACCACAAATATTCAGCCATCC 59.299 43.478 0.00 0.00 0.00 3.51
366 367 4.989279 ACACCACAAATATTCAGCCATC 57.011 40.909 0.00 0.00 0.00 3.51
367 368 5.509498 AGTACACCACAAATATTCAGCCAT 58.491 37.500 0.00 0.00 0.00 4.40
368 369 4.917385 AGTACACCACAAATATTCAGCCA 58.083 39.130 0.00 0.00 0.00 4.75
369 370 6.995511 TTAGTACACCACAAATATTCAGCC 57.004 37.500 0.00 0.00 0.00 4.85
370 371 8.438676 AGATTAGTACACCACAAATATTCAGC 57.561 34.615 0.00 0.00 0.00 4.26
374 375 9.623000 GGGTTAGATTAGTACACCACAAATATT 57.377 33.333 0.00 0.00 0.00 1.28
375 376 8.774183 TGGGTTAGATTAGTACACCACAAATAT 58.226 33.333 0.00 0.00 0.00 1.28
376 377 8.042515 GTGGGTTAGATTAGTACACCACAAATA 58.957 37.037 0.00 0.00 44.80 1.40
377 378 6.882678 GTGGGTTAGATTAGTACACCACAAAT 59.117 38.462 0.00 0.00 44.80 2.32
378 379 6.232692 GTGGGTTAGATTAGTACACCACAAA 58.767 40.000 0.00 0.00 44.80 2.83
379 380 5.797051 GTGGGTTAGATTAGTACACCACAA 58.203 41.667 0.00 0.00 44.80 3.33
380 381 5.410355 GTGGGTTAGATTAGTACACCACA 57.590 43.478 0.00 0.00 44.80 4.17
381 382 5.672421 AGTGGGTTAGATTAGTACACCAC 57.328 43.478 0.00 0.00 45.56 4.16
382 383 5.781306 TGAAGTGGGTTAGATTAGTACACCA 59.219 40.000 0.00 0.00 0.00 4.17
383 384 6.290294 TGAAGTGGGTTAGATTAGTACACC 57.710 41.667 0.00 0.00 0.00 4.16
384 385 7.384477 AGTTGAAGTGGGTTAGATTAGTACAC 58.616 38.462 0.00 0.00 0.00 2.90
385 386 7.549147 AGTTGAAGTGGGTTAGATTAGTACA 57.451 36.000 0.00 0.00 0.00 2.90
386 387 6.750963 CGAGTTGAAGTGGGTTAGATTAGTAC 59.249 42.308 0.00 0.00 0.00 2.73
387 388 6.626623 GCGAGTTGAAGTGGGTTAGATTAGTA 60.627 42.308 0.00 0.00 0.00 1.82
388 389 5.721232 CGAGTTGAAGTGGGTTAGATTAGT 58.279 41.667 0.00 0.00 0.00 2.24
389 390 4.567159 GCGAGTTGAAGTGGGTTAGATTAG 59.433 45.833 0.00 0.00 0.00 1.73
390 391 4.222145 AGCGAGTTGAAGTGGGTTAGATTA 59.778 41.667 0.00 0.00 0.00 1.75
391 392 3.008049 AGCGAGTTGAAGTGGGTTAGATT 59.992 43.478 0.00 0.00 0.00 2.40
392 393 2.567615 AGCGAGTTGAAGTGGGTTAGAT 59.432 45.455 0.00 0.00 0.00 1.98
393 394 1.968493 AGCGAGTTGAAGTGGGTTAGA 59.032 47.619 0.00 0.00 0.00 2.10
394 395 2.457366 AGCGAGTTGAAGTGGGTTAG 57.543 50.000 0.00 0.00 0.00 2.34
395 396 2.922740 AAGCGAGTTGAAGTGGGTTA 57.077 45.000 0.00 0.00 0.00 2.85
396 397 2.052782 AAAGCGAGTTGAAGTGGGTT 57.947 45.000 0.00 0.00 0.00 4.11
397 398 2.052782 AAAAGCGAGTTGAAGTGGGT 57.947 45.000 0.00 0.00 0.00 4.51
398 399 2.484264 CCTAAAAGCGAGTTGAAGTGGG 59.516 50.000 0.00 0.00 0.00 4.61
399 400 3.139077 ACCTAAAAGCGAGTTGAAGTGG 58.861 45.455 0.00 0.00 0.00 4.00
400 401 4.143389 CGTACCTAAAAGCGAGTTGAAGTG 60.143 45.833 0.00 0.00 0.00 3.16
401 402 3.985925 CGTACCTAAAAGCGAGTTGAAGT 59.014 43.478 0.00 0.00 0.00 3.01
402 403 3.367025 CCGTACCTAAAAGCGAGTTGAAG 59.633 47.826 0.00 0.00 0.00 3.02
403 404 3.319755 CCGTACCTAAAAGCGAGTTGAA 58.680 45.455 0.00 0.00 0.00 2.69
404 405 2.927871 GCCGTACCTAAAAGCGAGTTGA 60.928 50.000 0.00 0.00 0.00 3.18
405 406 1.392510 GCCGTACCTAAAAGCGAGTTG 59.607 52.381 0.00 0.00 0.00 3.16
406 407 1.274447 AGCCGTACCTAAAAGCGAGTT 59.726 47.619 0.00 0.00 0.00 3.01
407 408 0.893447 AGCCGTACCTAAAAGCGAGT 59.107 50.000 0.00 0.00 0.00 4.18
408 409 1.135199 TCAGCCGTACCTAAAAGCGAG 60.135 52.381 0.00 0.00 0.00 5.03
409 410 0.889994 TCAGCCGTACCTAAAAGCGA 59.110 50.000 0.00 0.00 0.00 4.93
410 411 1.278238 CTCAGCCGTACCTAAAAGCG 58.722 55.000 0.00 0.00 0.00 4.68
411 412 1.007580 GCTCAGCCGTACCTAAAAGC 58.992 55.000 0.00 0.00 0.00 3.51
412 413 2.674796 AGCTCAGCCGTACCTAAAAG 57.325 50.000 0.00 0.00 0.00 2.27
413 414 2.565834 AGAAGCTCAGCCGTACCTAAAA 59.434 45.455 0.00 0.00 0.00 1.52
414 415 2.165845 GAGAAGCTCAGCCGTACCTAAA 59.834 50.000 0.00 0.00 0.00 1.85
415 416 1.749634 GAGAAGCTCAGCCGTACCTAA 59.250 52.381 0.00 0.00 0.00 2.69
416 417 1.390565 GAGAAGCTCAGCCGTACCTA 58.609 55.000 0.00 0.00 0.00 3.08
417 418 1.658686 CGAGAAGCTCAGCCGTACCT 61.659 60.000 0.00 0.00 0.00 3.08
418 419 1.226717 CGAGAAGCTCAGCCGTACC 60.227 63.158 0.00 0.00 0.00 3.34
419 420 1.874466 GCGAGAAGCTCAGCCGTAC 60.874 63.158 0.00 0.00 44.04 3.67
420 421 2.490217 GCGAGAAGCTCAGCCGTA 59.510 61.111 0.00 0.00 44.04 4.02
425 426 2.985589 CTGAGTTCTGCGAGAAGCTCAG 60.986 54.545 23.46 23.46 44.20 3.35
430 431 6.640499 CCTATAAATCTGAGTTCTGCGAGAAG 59.360 42.308 0.00 0.00 34.42 2.85
431 432 6.096987 ACCTATAAATCTGAGTTCTGCGAGAA 59.903 38.462 0.00 0.00 0.00 2.87
432 433 5.594725 ACCTATAAATCTGAGTTCTGCGAGA 59.405 40.000 0.00 0.00 0.00 4.04
433 434 5.689514 CACCTATAAATCTGAGTTCTGCGAG 59.310 44.000 0.00 0.00 0.00 5.03
434 435 5.127194 ACACCTATAAATCTGAGTTCTGCGA 59.873 40.000 0.00 0.00 0.00 5.10
435 436 5.352284 ACACCTATAAATCTGAGTTCTGCG 58.648 41.667 0.00 0.00 0.00 5.18
436 437 7.334421 TCAAACACCTATAAATCTGAGTTCTGC 59.666 37.037 0.00 0.00 0.00 4.26
437 438 8.777865 TCAAACACCTATAAATCTGAGTTCTG 57.222 34.615 0.00 0.00 0.00 3.02
438 439 9.965902 ATTCAAACACCTATAAATCTGAGTTCT 57.034 29.630 0.00 0.00 0.00 3.01
517 518 9.923143 CTCCATTCCAGTTTTACATCGTATATA 57.077 33.333 0.00 0.00 0.00 0.86
518 519 7.387948 GCTCCATTCCAGTTTTACATCGTATAT 59.612 37.037 0.00 0.00 0.00 0.86
519 520 6.704493 GCTCCATTCCAGTTTTACATCGTATA 59.296 38.462 0.00 0.00 0.00 1.47
520 521 5.527582 GCTCCATTCCAGTTTTACATCGTAT 59.472 40.000 0.00 0.00 0.00 3.06
521 522 4.873827 GCTCCATTCCAGTTTTACATCGTA 59.126 41.667 0.00 0.00 0.00 3.43
522 523 3.689649 GCTCCATTCCAGTTTTACATCGT 59.310 43.478 0.00 0.00 0.00 3.73
523 524 3.941483 AGCTCCATTCCAGTTTTACATCG 59.059 43.478 0.00 0.00 0.00 3.84
524 525 6.456988 CGTTAGCTCCATTCCAGTTTTACATC 60.457 42.308 0.00 0.00 0.00 3.06
525 526 5.354234 CGTTAGCTCCATTCCAGTTTTACAT 59.646 40.000 0.00 0.00 0.00 2.29
526 527 4.693566 CGTTAGCTCCATTCCAGTTTTACA 59.306 41.667 0.00 0.00 0.00 2.41
527 528 4.694037 ACGTTAGCTCCATTCCAGTTTTAC 59.306 41.667 0.00 0.00 0.00 2.01
528 529 4.901868 ACGTTAGCTCCATTCCAGTTTTA 58.098 39.130 0.00 0.00 0.00 1.52
529 530 3.751518 ACGTTAGCTCCATTCCAGTTTT 58.248 40.909 0.00 0.00 0.00 2.43
530 531 3.418684 ACGTTAGCTCCATTCCAGTTT 57.581 42.857 0.00 0.00 0.00 2.66
531 532 3.767673 TCTACGTTAGCTCCATTCCAGTT 59.232 43.478 0.00 0.00 0.00 3.16
532 533 3.362706 TCTACGTTAGCTCCATTCCAGT 58.637 45.455 0.00 0.00 0.00 4.00
533 534 3.797184 GCTCTACGTTAGCTCCATTCCAG 60.797 52.174 13.63 0.00 37.01 3.86
534 535 2.100916 GCTCTACGTTAGCTCCATTCCA 59.899 50.000 13.63 0.00 37.01 3.53
535 536 2.745102 GCTCTACGTTAGCTCCATTCC 58.255 52.381 13.63 0.00 37.01 3.01
536 537 2.386249 CGCTCTACGTTAGCTCCATTC 58.614 52.381 17.33 0.00 37.85 2.67
537 538 2.493713 CGCTCTACGTTAGCTCCATT 57.506 50.000 17.33 0.00 37.85 3.16
549 550 1.853319 GTGCACACACACGCTCTAC 59.147 57.895 13.17 0.00 46.61 2.59
584 585 7.727181 TCTACTCCCTATACATTCTTTTGCTC 58.273 38.462 0.00 0.00 0.00 4.26
586 587 8.910351 AATCTACTCCCTATACATTCTTTTGC 57.090 34.615 0.00 0.00 0.00 3.68
605 606 7.949006 TCCCTGGAGACTACCTATAAAATCTAC 59.051 40.741 0.00 0.00 0.00 2.59
612 613 3.795545 TGGTCCCTGGAGACTACCTATAA 59.204 47.826 12.89 0.00 36.95 0.98
615 616 1.690010 TGGTCCCTGGAGACTACCTA 58.310 55.000 12.89 0.00 36.95 3.08
616 617 0.790993 TTGGTCCCTGGAGACTACCT 59.209 55.000 12.89 0.00 36.95 3.08
629 630 1.235281 GGGAGAGTGCGTTTTGGTCC 61.235 60.000 0.00 0.00 0.00 4.46
651 652 4.135153 CGAGCCTCCGACACCCTG 62.135 72.222 0.00 0.00 0.00 4.45
658 659 1.899437 AAAATGCTCCGAGCCTCCGA 61.899 55.000 17.81 0.00 41.51 4.55
659 660 1.026718 AAAAATGCTCCGAGCCTCCG 61.027 55.000 17.81 0.00 41.51 4.63
660 661 2.873797 AAAAATGCTCCGAGCCTCC 58.126 52.632 17.81 0.00 41.51 4.30
688 689 2.807967 TGTACTGCTGAAGATGTTGTGC 59.192 45.455 0.00 0.00 0.00 4.57
693 694 5.220710 AGTTTCTGTACTGCTGAAGATGT 57.779 39.130 0.00 0.00 36.60 3.06
782 783 4.612943 GGTCTTCTCATCGTCCTACATTC 58.387 47.826 0.00 0.00 0.00 2.67
792 793 1.066587 GCCCTCGGTCTTCTCATCG 59.933 63.158 0.00 0.00 0.00 3.84
797 798 3.305720 TGTATATTGCCCTCGGTCTTCT 58.694 45.455 0.00 0.00 0.00 2.85
813 814 8.015658 CAGAATCGTCGTGAGTTCATATGTATA 58.984 37.037 1.90 0.00 0.00 1.47
845 846 0.109723 AGCCAACGGAAGCAAACCTA 59.890 50.000 0.00 0.00 0.00 3.08
846 847 0.755327 AAGCCAACGGAAGCAAACCT 60.755 50.000 0.00 0.00 0.00 3.50
847 848 0.955905 TAAGCCAACGGAAGCAAACC 59.044 50.000 0.00 0.00 0.00 3.27
848 849 1.666023 GCTAAGCCAACGGAAGCAAAC 60.666 52.381 0.00 0.00 33.38 2.93
849 850 0.596082 GCTAAGCCAACGGAAGCAAA 59.404 50.000 0.00 0.00 33.38 3.68
865 866 2.232696 TGAGTATTTGACGGCTGTGCTA 59.767 45.455 0.80 0.00 0.00 3.49
886 887 1.001633 AGTTCAACCGTCAACGCCTAT 59.998 47.619 0.00 0.00 38.18 2.57
909 910 1.650242 TTGGAGTTCAGGTTGGGCCA 61.650 55.000 0.00 0.00 40.61 5.36
911 912 0.467290 TGTTGGAGTTCAGGTTGGGC 60.467 55.000 0.00 0.00 0.00 5.36
912 913 1.609208 CTGTTGGAGTTCAGGTTGGG 58.391 55.000 0.00 0.00 0.00 4.12
913 914 1.609208 CCTGTTGGAGTTCAGGTTGG 58.391 55.000 3.38 0.00 44.19 3.77
924 925 1.593196 CTTTTCTCACGCCTGTTGGA 58.407 50.000 0.00 0.00 34.57 3.53
979 1001 1.153862 CTGCTCACGTCTCTCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
981 1003 1.153862 GGCTGCTCACGTCTCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
1268 1297 0.936297 CTTTTGTGCAGCAGGTTCGC 60.936 55.000 0.00 0.00 0.00 4.70
1308 1347 3.054878 GCTCAAGCACTGGTCAAATTTG 58.945 45.455 12.15 12.15 41.59 2.32
1316 1355 3.244700 ACATTTAGAGCTCAAGCACTGGT 60.245 43.478 17.77 0.56 41.86 4.00
1335 1378 0.403271 ACAAGAGCTGCCCAGAACAT 59.597 50.000 0.00 0.00 0.00 2.71
1345 1388 5.245531 TGTTACCTATTCCAACAAGAGCTG 58.754 41.667 0.00 0.00 0.00 4.24
1386 1439 9.354673 TGACTCTCAAAAAGAAATTCCTATGTT 57.645 29.630 0.00 0.00 32.23 2.71
1387 1440 8.924511 TGACTCTCAAAAAGAAATTCCTATGT 57.075 30.769 0.00 0.00 32.23 2.29
1388 1441 9.837525 CTTGACTCTCAAAAAGAAATTCCTATG 57.162 33.333 0.00 0.00 35.73 2.23
1389 1442 9.018582 CCTTGACTCTCAAAAAGAAATTCCTAT 57.981 33.333 0.00 0.00 35.73 2.57
1399 1452 8.327941 TCATACATTCCTTGACTCTCAAAAAG 57.672 34.615 0.00 0.00 35.73 2.27
1476 1534 8.833264 CCAACACAACGTAATTATTTTCGTTAG 58.167 33.333 15.50 13.88 43.90 2.34
1633 3231 4.739716 CCATTTTCAACCTCGAAACAGTTG 59.260 41.667 9.72 9.72 41.75 3.16
1634 3232 4.736464 GCCATTTTCAACCTCGAAACAGTT 60.736 41.667 0.00 0.00 34.68 3.16
1636 3234 3.308530 GCCATTTTCAACCTCGAAACAG 58.691 45.455 0.00 0.00 34.68 3.16
1643 3241 5.659440 TCTTATTGGCCATTTTCAACCTC 57.341 39.130 6.09 0.00 0.00 3.85
1673 3271 2.630158 CCCTTCAACTGCTCTCTCATG 58.370 52.381 0.00 0.00 0.00 3.07
1758 3356 2.683867 CTGTTGTTTCCCGGTTGTAACA 59.316 45.455 0.00 4.63 0.00 2.41
1798 3396 2.107901 TCCTTATCCCTCCCTACGACTC 59.892 54.545 0.00 0.00 0.00 3.36
1844 3442 2.746362 CTCTTTTGTGATGCTCCCAGAC 59.254 50.000 0.00 0.00 0.00 3.51
1925 3523 4.714632 TGAACTCCGAATCCTTGAAAACT 58.285 39.130 0.00 0.00 0.00 2.66
1940 3538 3.119424 CCCGAGAGTACTCTTTGAACTCC 60.119 52.174 25.86 9.97 40.42 3.85
1941 3539 3.506844 ACCCGAGAGTACTCTTTGAACTC 59.493 47.826 25.86 10.90 40.61 3.01
2046 3645 8.473358 TTTTCTATCATCTGAAGGTCGGTATA 57.527 34.615 0.00 0.00 0.00 1.47
2051 3650 7.928706 AGGTTATTTTCTATCATCTGAAGGTCG 59.071 37.037 0.00 0.00 0.00 4.79
2086 3685 7.658575 TGATTAGTACGCTTTTAACAGAAAGGT 59.341 33.333 0.00 0.00 37.17 3.50
2102 3701 7.805542 CACAGGTCATCTAAGATGATTAGTACG 59.194 40.741 0.00 0.00 0.00 3.67
2141 3740 5.703130 AGTCTTCAACCTTTCTAACTGATGC 59.297 40.000 0.00 0.00 0.00 3.91
2239 3838 0.768221 ATATGGCCCCACCGTCTGAT 60.768 55.000 0.00 0.00 43.94 2.90
2251 3856 2.192263 AGGGAGCTAGCTTATATGGCC 58.808 52.381 20.42 13.13 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.