Multiple sequence alignment - TraesCS5D01G499100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G499100 chr5D 100.000 5360 0 0 1 5360 528732290 528726931 0.000000e+00 9899.0
1 TraesCS5D01G499100 chr5D 83.813 556 69 9 1858 2412 22424744 22424209 4.790000e-140 508.0
2 TraesCS5D01G499100 chr5D 80.688 378 44 11 1479 1838 22425514 22425148 3.180000e-67 267.0
3 TraesCS5D01G499100 chr5D 79.646 226 42 4 4139 4362 311605335 311605558 5.560000e-35 159.0
4 TraesCS5D01G499100 chr5D 96.629 89 2 1 1858 1946 484040977 484040890 4.330000e-31 147.0
5 TraesCS5D01G499100 chr5A 89.493 2151 131 41 1854 3986 656884302 656882229 0.000000e+00 2632.0
6 TraesCS5D01G499100 chr5A 94.164 1268 47 14 4108 5360 656881955 656880700 0.000000e+00 1906.0
7 TraesCS5D01G499100 chr5A 91.682 541 29 11 1314 1854 656884868 656884344 0.000000e+00 736.0
8 TraesCS5D01G499100 chr5A 85.401 548 42 23 798 1314 656885502 656884962 7.900000e-148 534.0
9 TraesCS5D01G499100 chr5A 92.453 53 3 1 272 323 656891920 656891868 2.070000e-09 75.0
10 TraesCS5D01G499100 chr5A 91.111 45 4 0 212 256 656891960 656891916 1.610000e-05 62.1
11 TraesCS5D01G499100 chr5B 89.019 2140 139 45 1861 3986 665770757 665768700 0.000000e+00 2562.0
12 TraesCS5D01G499100 chr5B 85.424 1132 63 36 527 1613 665772111 665771037 0.000000e+00 1083.0
13 TraesCS5D01G499100 chr5B 95.882 510 21 0 4116 4625 665768602 665768093 0.000000e+00 826.0
14 TraesCS5D01G499100 chr5B 97.842 139 3 0 1719 1857 665770944 665770806 1.930000e-59 241.0
15 TraesCS5D01G499100 chr5B 78.327 263 25 10 221 452 665772498 665772237 2.010000e-29 141.0
16 TraesCS5D01G499100 chr5B 78.505 214 42 4 4139 4350 357552675 357552886 2.600000e-28 137.0
17 TraesCS5D01G499100 chrUn 82.143 812 93 21 1858 2669 22414271 22415030 0.000000e+00 649.0
18 TraesCS5D01G499100 chrUn 88.235 102 10 2 1755 1854 22414125 22414226 2.620000e-23 121.0
19 TraesCS5D01G499100 chr7A 90.278 288 23 4 2151 2438 7714302 7714584 6.560000e-99 372.0
20 TraesCS5D01G499100 chr7A 89.583 288 25 4 2151 2438 709167514 709167796 1.420000e-95 361.0
21 TraesCS5D01G499100 chr7A 83.651 367 35 13 2151 2517 113434929 113434588 6.700000e-84 322.0
22 TraesCS5D01G499100 chr3D 82.474 291 40 5 1858 2148 316554601 316554322 1.490000e-60 244.0
23 TraesCS5D01G499100 chr3D 82.474 291 39 5 1858 2148 449733758 449733480 1.490000e-60 244.0
24 TraesCS5D01G499100 chr3D 95.506 89 3 1 1858 1946 77842344 77842431 2.010000e-29 141.0
25 TraesCS5D01G499100 chr3D 87.963 108 9 3 1750 1854 316554752 316554646 2.030000e-24 124.0
26 TraesCS5D01G499100 chr3D 88.119 101 9 3 1764 1862 77842200 77842299 3.390000e-22 117.0
27 TraesCS5D01G499100 chr4D 96.629 89 2 1 1858 1946 493214953 493215040 4.330000e-31 147.0
28 TraesCS5D01G499100 chr4D 90.000 100 1 1 1764 1854 493214809 493214908 2.620000e-23 121.0
29 TraesCS5D01G499100 chr2B 94.382 89 4 1 1858 1946 765129471 765129384 9.360000e-28 135.0
30 TraesCS5D01G499100 chr2A 94.253 87 4 1 1860 1946 774082451 774082366 1.210000e-26 132.0
31 TraesCS5D01G499100 chr2D 87.963 108 9 3 1750 1854 585068941 585069047 2.030000e-24 124.0
32 TraesCS5D01G499100 chr1D 87.963 108 9 3 1750 1854 443751630 443751736 2.030000e-24 124.0
33 TraesCS5D01G499100 chr6D 86.792 106 10 3 1750 1852 428456951 428456847 1.220000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G499100 chr5D 528726931 528732290 5359 True 9899.0 9899 100.0000 1 5360 1 chr5D.!!$R2 5359
1 TraesCS5D01G499100 chr5D 22424209 22425514 1305 True 387.5 508 82.2505 1479 2412 2 chr5D.!!$R3 933
2 TraesCS5D01G499100 chr5A 656880700 656885502 4802 True 1452.0 2632 90.1850 798 5360 4 chr5A.!!$R1 4562
3 TraesCS5D01G499100 chr5B 665768093 665772498 4405 True 970.6 2562 89.2988 221 4625 5 chr5B.!!$R1 4404
4 TraesCS5D01G499100 chrUn 22414125 22415030 905 False 385.0 649 85.1890 1755 2669 2 chrUn.!!$F1 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.165727 CTTCGCAGCACACGCAATTA 59.834 50.0 0.0 0.0 42.27 1.40 F
1187 1334 0.106918 TCTCCCGCAACCAACTTTGT 60.107 50.0 0.0 0.0 0.00 2.83 F
1188 1335 0.030638 CTCCCGCAACCAACTTTGTG 59.969 55.0 0.0 0.0 36.84 3.33 F
1609 1862 0.246910 GGTTCGTCTCCCCTTCTGTC 59.753 60.0 0.0 0.0 0.00 3.51 F
1650 1903 0.402861 AGGAGGGGTTCAGGTTCCAA 60.403 55.0 0.0 0.0 0.00 3.53 F
1652 1905 0.609406 GAGGGGTTCAGGTTCCAAGC 60.609 60.0 0.0 0.0 0.00 4.01 F
2587 3263 0.679002 CACCATGCCCTCCTTCTGTG 60.679 60.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 1336 0.310854 CAACGGCAGGGTTTCAGTTC 59.689 55.000 0.00 0.00 0.00 3.01 R
2587 3263 0.460284 AACCGATGCCACGACTCATC 60.460 55.000 0.00 0.00 36.60 2.92 R
2873 3550 1.273327 CCAGCATTTTCCCTGTTCCAC 59.727 52.381 0.00 0.00 0.00 4.02 R
2918 3595 3.350909 CTGCACTACACGCCGGCTA 62.351 63.158 26.68 9.49 0.00 3.93 R
3307 3989 4.269844 GTGCAAAACAAAACGGAATCATGT 59.730 37.500 0.00 0.00 0.00 3.21 R
3556 4241 5.211454 TGTTTGCACAGAAACAACATATCG 58.789 37.500 0.00 0.00 41.70 2.92 R
4580 5420 0.100682 TGATCAGGAACGAGCTACGC 59.899 55.000 0.00 0.00 46.94 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.434884 CGTCGACCAGCCAGCAAT 60.435 61.111 10.58 0.00 0.00 3.56
20 21 2.034879 CGTCGACCAGCCAGCAATT 61.035 57.895 10.58 0.00 0.00 2.32
21 22 0.739462 CGTCGACCAGCCAGCAATTA 60.739 55.000 10.58 0.00 0.00 1.40
22 23 1.448985 GTCGACCAGCCAGCAATTAA 58.551 50.000 3.51 0.00 0.00 1.40
23 24 1.810151 GTCGACCAGCCAGCAATTAAA 59.190 47.619 3.51 0.00 0.00 1.52
24 25 2.423538 GTCGACCAGCCAGCAATTAAAT 59.576 45.455 3.51 0.00 0.00 1.40
25 26 3.088532 TCGACCAGCCAGCAATTAAATT 58.911 40.909 0.00 0.00 0.00 1.82
26 27 3.509575 TCGACCAGCCAGCAATTAAATTT 59.490 39.130 0.00 0.00 0.00 1.82
27 28 3.859386 CGACCAGCCAGCAATTAAATTTC 59.141 43.478 0.00 0.00 0.00 2.17
28 29 4.617995 CGACCAGCCAGCAATTAAATTTCA 60.618 41.667 0.00 0.00 0.00 2.69
29 30 4.568956 ACCAGCCAGCAATTAAATTTCAC 58.431 39.130 0.00 0.00 0.00 3.18
30 31 4.040217 ACCAGCCAGCAATTAAATTTCACA 59.960 37.500 0.00 0.00 0.00 3.58
31 32 4.389687 CCAGCCAGCAATTAAATTTCACAC 59.610 41.667 0.00 0.00 0.00 3.82
32 33 4.090354 CAGCCAGCAATTAAATTTCACACG 59.910 41.667 0.00 0.00 0.00 4.49
33 34 3.367630 GCCAGCAATTAAATTTCACACGG 59.632 43.478 0.00 0.00 0.00 4.94
34 35 4.804108 CCAGCAATTAAATTTCACACGGA 58.196 39.130 0.00 0.00 0.00 4.69
35 36 5.410067 CCAGCAATTAAATTTCACACGGAT 58.590 37.500 0.00 0.00 0.00 4.18
36 37 5.868801 CCAGCAATTAAATTTCACACGGATT 59.131 36.000 0.00 0.00 0.00 3.01
37 38 6.368516 CCAGCAATTAAATTTCACACGGATTT 59.631 34.615 0.00 0.00 0.00 2.17
38 39 7.095271 CCAGCAATTAAATTTCACACGGATTTT 60.095 33.333 0.00 0.00 0.00 1.82
39 40 8.920665 CAGCAATTAAATTTCACACGGATTTTA 58.079 29.630 0.00 0.00 0.00 1.52
40 41 8.921670 AGCAATTAAATTTCACACGGATTTTAC 58.078 29.630 0.00 0.00 0.00 2.01
41 42 8.921670 GCAATTAAATTTCACACGGATTTTACT 58.078 29.630 0.00 0.00 0.00 2.24
43 44 7.861176 TTAAATTTCACACGGATTTTACTGC 57.139 32.000 0.00 0.00 0.00 4.40
44 45 5.705609 AATTTCACACGGATTTTACTGCT 57.294 34.783 0.00 0.00 0.00 4.24
45 46 5.705609 ATTTCACACGGATTTTACTGCTT 57.294 34.783 0.00 0.00 0.00 3.91
46 47 4.742438 TTCACACGGATTTTACTGCTTC 57.258 40.909 0.00 0.00 0.00 3.86
47 48 2.734606 TCACACGGATTTTACTGCTTCG 59.265 45.455 0.00 0.00 0.00 3.79
48 49 1.463444 ACACGGATTTTACTGCTTCGC 59.537 47.619 0.00 0.00 0.00 4.70
49 50 1.463056 CACGGATTTTACTGCTTCGCA 59.537 47.619 0.00 0.00 36.92 5.10
59 60 4.312231 GCTTCGCAGCACACGCAA 62.312 61.111 0.97 0.00 46.49 4.85
60 61 2.557805 CTTCGCAGCACACGCAAT 59.442 55.556 0.00 0.00 42.27 3.56
61 62 1.081906 CTTCGCAGCACACGCAATT 60.082 52.632 0.00 0.00 42.27 2.32
62 63 0.165727 CTTCGCAGCACACGCAATTA 59.834 50.000 0.00 0.00 42.27 1.40
63 64 0.588737 TTCGCAGCACACGCAATTAA 59.411 45.000 0.00 0.00 42.27 1.40
64 65 0.801872 TCGCAGCACACGCAATTAAT 59.198 45.000 0.00 0.00 42.27 1.40
65 66 1.198867 TCGCAGCACACGCAATTAATT 59.801 42.857 0.00 0.00 42.27 1.40
66 67 1.984990 CGCAGCACACGCAATTAATTT 59.015 42.857 0.00 0.00 42.27 1.82
67 68 3.120165 TCGCAGCACACGCAATTAATTTA 60.120 39.130 0.00 0.00 42.27 1.40
68 69 3.790820 CGCAGCACACGCAATTAATTTAT 59.209 39.130 0.00 0.00 42.27 1.40
69 70 4.316584 CGCAGCACACGCAATTAATTTATG 60.317 41.667 0.00 0.18 42.27 1.90
70 71 4.562394 GCAGCACACGCAATTAATTTATGT 59.438 37.500 0.00 0.80 42.27 2.29
71 72 5.062058 GCAGCACACGCAATTAATTTATGTT 59.938 36.000 0.00 0.00 42.27 2.71
72 73 6.400940 GCAGCACACGCAATTAATTTATGTTT 60.401 34.615 0.00 0.00 42.27 2.83
73 74 7.508965 CAGCACACGCAATTAATTTATGTTTT 58.491 30.769 0.00 0.00 42.27 2.43
74 75 7.474948 CAGCACACGCAATTAATTTATGTTTTG 59.525 33.333 0.00 1.58 42.27 2.44
75 76 6.735957 GCACACGCAATTAATTTATGTTTTGG 59.264 34.615 0.00 0.00 38.36 3.28
76 77 7.359598 GCACACGCAATTAATTTATGTTTTGGA 60.360 33.333 0.00 0.00 38.36 3.53
77 78 8.491152 CACACGCAATTAATTTATGTTTTGGAA 58.509 29.630 0.00 0.00 0.00 3.53
78 79 8.491950 ACACGCAATTAATTTATGTTTTGGAAC 58.508 29.630 0.00 0.00 36.29 3.62
79 80 7.682055 CACGCAATTAATTTATGTTTTGGAACG 59.318 33.333 0.00 0.00 38.65 3.95
80 81 7.382759 ACGCAATTAATTTATGTTTTGGAACGT 59.617 29.630 0.00 0.00 38.65 3.99
81 82 7.682055 CGCAATTAATTTATGTTTTGGAACGTG 59.318 33.333 0.00 0.00 38.65 4.49
82 83 7.477112 GCAATTAATTTATGTTTTGGAACGTGC 59.523 33.333 0.00 0.00 38.65 5.34
83 84 8.491152 CAATTAATTTATGTTTTGGAACGTGCA 58.509 29.630 0.00 0.00 38.65 4.57
84 85 8.770438 ATTAATTTATGTTTTGGAACGTGCAT 57.230 26.923 0.00 0.00 38.65 3.96
85 86 6.464895 AATTTATGTTTTGGAACGTGCATG 57.535 33.333 3.82 3.82 38.65 4.06
86 87 1.782044 ATGTTTTGGAACGTGCATGC 58.218 45.000 11.82 11.82 38.65 4.06
87 88 0.593518 TGTTTTGGAACGTGCATGCG 60.594 50.000 14.09 1.59 38.65 4.73
88 89 0.317436 GTTTTGGAACGTGCATGCGA 60.317 50.000 14.09 0.00 35.59 5.10
89 90 0.317436 TTTTGGAACGTGCATGCGAC 60.317 50.000 14.09 11.32 35.59 5.19
90 91 2.436997 TTTGGAACGTGCATGCGACG 62.437 55.000 28.73 28.73 42.62 5.12
91 92 4.794241 GGAACGTGCATGCGACGC 62.794 66.667 29.65 14.19 40.56 5.19
99 100 4.833561 CATGCGACGCGTGCGAAG 62.834 66.667 27.33 14.40 38.74 3.79
102 103 4.470050 GCGACGCGTGCGAAGAAG 62.470 66.667 27.00 7.86 42.83 2.85
103 104 3.097728 CGACGCGTGCGAAGAAGT 61.098 61.111 20.70 0.00 42.83 3.01
104 105 2.645510 CGACGCGTGCGAAGAAGTT 61.646 57.895 20.70 0.00 42.83 2.66
105 106 1.154836 GACGCGTGCGAAGAAGTTG 60.155 57.895 20.70 0.00 42.83 3.16
106 107 2.497628 CGCGTGCGAAGAAGTTGC 60.498 61.111 8.89 0.00 42.83 4.17
107 108 2.939022 GCGTGCGAAGAAGTTGCT 59.061 55.556 0.00 0.00 0.00 3.91
108 109 1.154580 GCGTGCGAAGAAGTTGCTC 60.155 57.895 0.00 0.00 0.00 4.26
109 110 1.128611 CGTGCGAAGAAGTTGCTCG 59.871 57.895 0.00 0.00 38.88 5.03
111 112 2.094724 GCGAAGAAGTTGCTCGCG 59.905 61.111 11.23 0.00 39.94 5.87
112 113 2.372690 GCGAAGAAGTTGCTCGCGA 61.373 57.895 9.26 9.26 39.94 5.87
113 114 1.698898 CGAAGAAGTTGCTCGCGAG 59.301 57.895 31.37 31.37 0.00 5.03
114 115 1.678269 CGAAGAAGTTGCTCGCGAGG 61.678 60.000 35.10 18.35 0.00 4.63
115 116 1.355066 GAAGAAGTTGCTCGCGAGGG 61.355 60.000 35.10 14.75 0.00 4.30
143 144 2.514592 CGGAATGGTGCCTGCGAT 60.515 61.111 0.00 0.00 0.00 4.58
144 145 2.827051 CGGAATGGTGCCTGCGATG 61.827 63.158 0.00 0.00 0.00 3.84
145 146 2.410469 GAATGGTGCCTGCGATGC 59.590 61.111 0.00 0.00 0.00 3.91
146 147 3.129913 GAATGGTGCCTGCGATGCC 62.130 63.158 0.00 0.00 0.00 4.40
147 148 3.650298 AATGGTGCCTGCGATGCCT 62.650 57.895 0.00 0.00 0.00 4.75
153 154 3.506096 CCTGCGATGCCTGCTGTG 61.506 66.667 0.00 0.00 0.00 3.66
154 155 2.745100 CTGCGATGCCTGCTGTGT 60.745 61.111 0.00 0.00 0.00 3.72
155 156 2.281692 TGCGATGCCTGCTGTGTT 60.282 55.556 0.00 0.00 0.00 3.32
156 157 1.859427 CTGCGATGCCTGCTGTGTTT 61.859 55.000 0.00 0.00 0.00 2.83
157 158 1.154150 GCGATGCCTGCTGTGTTTC 60.154 57.895 0.00 0.00 0.00 2.78
158 159 1.503542 CGATGCCTGCTGTGTTTCC 59.496 57.895 0.00 0.00 0.00 3.13
159 160 1.236616 CGATGCCTGCTGTGTTTCCA 61.237 55.000 0.00 0.00 0.00 3.53
160 161 0.242017 GATGCCTGCTGTGTTTCCAC 59.758 55.000 0.00 0.00 42.19 4.02
161 162 1.181098 ATGCCTGCTGTGTTTCCACC 61.181 55.000 0.00 0.00 41.09 4.61
162 163 2.564721 GCCTGCTGTGTTTCCACCC 61.565 63.158 0.00 0.00 41.09 4.61
163 164 1.151450 CCTGCTGTGTTTCCACCCT 59.849 57.895 0.00 0.00 41.09 4.34
164 165 0.890996 CCTGCTGTGTTTCCACCCTC 60.891 60.000 0.00 0.00 41.09 4.30
165 166 1.227823 TGCTGTGTTTCCACCCTCG 60.228 57.895 0.00 0.00 41.09 4.63
166 167 1.227853 GCTGTGTTTCCACCCTCGT 60.228 57.895 0.00 0.00 41.09 4.18
167 168 1.228657 GCTGTGTTTCCACCCTCGTC 61.229 60.000 0.00 0.00 41.09 4.20
168 169 0.944311 CTGTGTTTCCACCCTCGTCG 60.944 60.000 0.00 0.00 41.09 5.12
169 170 1.364901 GTGTTTCCACCCTCGTCGA 59.635 57.895 0.00 0.00 35.44 4.20
170 171 0.666577 GTGTTTCCACCCTCGTCGAG 60.667 60.000 15.53 15.53 35.44 4.04
171 172 1.111116 TGTTTCCACCCTCGTCGAGT 61.111 55.000 20.37 1.21 0.00 4.18
172 173 0.666577 GTTTCCACCCTCGTCGAGTG 60.667 60.000 20.37 12.28 0.00 3.51
173 174 0.824595 TTTCCACCCTCGTCGAGTGA 60.825 55.000 20.37 8.82 33.21 3.41
174 175 0.824595 TTCCACCCTCGTCGAGTGAA 60.825 55.000 20.37 13.65 33.21 3.18
175 176 1.080705 CCACCCTCGTCGAGTGAAC 60.081 63.158 20.37 0.00 33.21 3.18
176 177 1.080705 CACCCTCGTCGAGTGAACC 60.081 63.158 20.37 0.00 33.21 3.62
177 178 2.178521 CCCTCGTCGAGTGAACCG 59.821 66.667 20.37 4.40 0.00 4.44
178 179 2.504244 CCTCGTCGAGTGAACCGC 60.504 66.667 20.37 0.00 0.00 5.68
179 180 2.870161 CTCGTCGAGTGAACCGCG 60.870 66.667 14.27 0.00 0.00 6.46
186 187 4.351938 AGTGAACCGCGCGCAGTA 62.352 61.111 32.61 9.13 0.00 2.74
187 188 3.838795 GTGAACCGCGCGCAGTAG 61.839 66.667 32.61 18.36 0.00 2.57
188 189 4.351938 TGAACCGCGCGCAGTAGT 62.352 61.111 32.61 19.06 0.00 2.73
189 190 2.202518 GAACCGCGCGCAGTAGTA 60.203 61.111 32.61 0.00 0.00 1.82
190 191 2.202570 AACCGCGCGCAGTAGTAG 60.203 61.111 32.61 12.66 0.00 2.57
191 192 2.862347 GAACCGCGCGCAGTAGTAGT 62.862 60.000 32.61 10.46 0.00 2.73
192 193 1.647545 AACCGCGCGCAGTAGTAGTA 61.648 55.000 32.61 0.00 0.00 1.82
193 194 1.063006 CCGCGCGCAGTAGTAGTAA 59.937 57.895 32.61 0.00 0.00 2.24
194 195 0.928908 CCGCGCGCAGTAGTAGTAAG 60.929 60.000 32.61 9.66 0.00 2.34
195 196 0.247974 CGCGCGCAGTAGTAGTAAGT 60.248 55.000 32.61 0.00 0.00 2.24
196 197 1.189403 GCGCGCAGTAGTAGTAAGTG 58.811 55.000 29.10 0.00 0.00 3.16
197 198 1.467035 GCGCGCAGTAGTAGTAAGTGT 60.467 52.381 29.10 0.00 0.00 3.55
198 199 2.438583 CGCGCAGTAGTAGTAAGTGTC 58.561 52.381 8.75 0.00 0.00 3.67
199 200 2.159612 CGCGCAGTAGTAGTAAGTGTCA 60.160 50.000 8.75 0.00 0.00 3.58
200 201 3.169733 GCGCAGTAGTAGTAAGTGTCAC 58.830 50.000 0.30 0.00 0.00 3.67
201 202 3.414464 CGCAGTAGTAGTAAGTGTCACG 58.586 50.000 0.00 0.00 0.00 4.35
202 203 3.120408 CGCAGTAGTAGTAAGTGTCACGT 60.120 47.826 0.00 0.00 0.00 4.49
203 204 4.401714 GCAGTAGTAGTAAGTGTCACGTC 58.598 47.826 0.00 0.00 0.00 4.34
204 205 4.083643 GCAGTAGTAGTAAGTGTCACGTCA 60.084 45.833 0.00 0.00 0.00 4.35
205 206 5.561532 GCAGTAGTAGTAAGTGTCACGTCAA 60.562 44.000 0.00 0.00 0.00 3.18
206 207 6.432936 CAGTAGTAGTAAGTGTCACGTCAAA 58.567 40.000 0.00 0.00 0.00 2.69
207 208 6.914215 CAGTAGTAGTAAGTGTCACGTCAAAA 59.086 38.462 0.00 0.00 0.00 2.44
208 209 7.433131 CAGTAGTAGTAAGTGTCACGTCAAAAA 59.567 37.037 0.00 0.00 0.00 1.94
241 242 3.365265 GGCTTCACCAACCGGCAG 61.365 66.667 0.00 0.00 38.86 4.85
243 244 2.672996 CTTCACCAACCGGCAGGG 60.673 66.667 16.37 10.99 43.47 4.45
249 250 3.977244 CAACCGGCAGGGCAACAC 61.977 66.667 8.08 0.00 43.47 3.32
293 295 1.670083 GTGAAGTAAAGGCGGCGGT 60.670 57.895 9.78 0.00 0.00 5.68
296 298 1.359459 GAAGTAAAGGCGGCGGTGAG 61.359 60.000 9.78 0.00 0.00 3.51
297 299 2.047560 GTAAAGGCGGCGGTGAGT 60.048 61.111 9.78 0.00 0.00 3.41
298 300 2.098831 GTAAAGGCGGCGGTGAGTC 61.099 63.158 9.78 0.00 0.00 3.36
305 307 3.371063 GGCGGTGAGTCGACCTGA 61.371 66.667 13.01 0.00 33.35 3.86
307 309 2.179517 CGGTGAGTCGACCTGAGC 59.820 66.667 13.01 5.09 33.35 4.26
392 403 0.410663 TCTCCTACCCCTTTCACCGA 59.589 55.000 0.00 0.00 0.00 4.69
393 404 0.824759 CTCCTACCCCTTTCACCGAG 59.175 60.000 0.00 0.00 0.00 4.63
462 493 4.277593 TTTTGCCTTGCCGGTGCG 62.278 61.111 1.90 0.00 41.78 5.34
483 516 1.154035 GCAAGCCCGGTTTCATTCG 60.154 57.895 0.00 0.00 0.00 3.34
487 520 2.332654 GCCCGGTTTCATTCGCACT 61.333 57.895 0.00 0.00 0.00 4.40
488 521 1.022451 GCCCGGTTTCATTCGCACTA 61.022 55.000 0.00 0.00 0.00 2.74
494 542 1.659098 GTTTCATTCGCACTACGGAGG 59.341 52.381 0.00 0.00 43.89 4.30
513 561 1.375396 CGCTGGACCATTTCACGGA 60.375 57.895 0.00 0.00 0.00 4.69
514 562 1.361668 CGCTGGACCATTTCACGGAG 61.362 60.000 0.00 0.00 0.00 4.63
515 563 1.026718 GCTGGACCATTTCACGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
516 564 0.324943 CTGGACCATTTCACGGAGGT 59.675 55.000 0.00 0.00 37.00 3.85
517 565 0.768622 TGGACCATTTCACGGAGGTT 59.231 50.000 0.00 0.00 33.77 3.50
518 566 1.144093 TGGACCATTTCACGGAGGTTT 59.856 47.619 0.00 0.00 33.77 3.27
519 567 1.810755 GGACCATTTCACGGAGGTTTC 59.189 52.381 0.00 0.00 33.77 2.78
520 568 2.500229 GACCATTTCACGGAGGTTTCA 58.500 47.619 0.00 0.00 33.77 2.69
521 569 2.225727 GACCATTTCACGGAGGTTTCAC 59.774 50.000 0.00 0.00 33.77 3.18
522 570 1.196808 CCATTTCACGGAGGTTTCACG 59.803 52.381 0.00 0.00 0.00 4.35
523 571 1.196808 CATTTCACGGAGGTTTCACGG 59.803 52.381 0.00 0.00 0.00 4.94
525 573 2.358247 CACGGAGGTTTCACGGGG 60.358 66.667 0.00 0.00 0.00 5.73
553 635 2.867429 CAATGAATTCCACGTTCCAGC 58.133 47.619 2.27 0.00 0.00 4.85
555 637 0.400213 TGAATTCCACGTTCCAGCCT 59.600 50.000 2.27 0.00 0.00 4.58
556 638 1.202879 TGAATTCCACGTTCCAGCCTT 60.203 47.619 2.27 0.00 0.00 4.35
557 639 1.468914 GAATTCCACGTTCCAGCCTTC 59.531 52.381 0.00 0.00 0.00 3.46
558 640 0.322546 ATTCCACGTTCCAGCCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
559 641 1.701031 TTCCACGTTCCAGCCTTCCA 61.701 55.000 0.00 0.00 0.00 3.53
561 643 1.371183 CACGTTCCAGCCTTCCAGA 59.629 57.895 0.00 0.00 0.00 3.86
562 644 0.951040 CACGTTCCAGCCTTCCAGAC 60.951 60.000 0.00 0.00 0.00 3.51
564 646 0.671781 CGTTCCAGCCTTCCAGACAG 60.672 60.000 0.00 0.00 0.00 3.51
565 647 0.687354 GTTCCAGCCTTCCAGACAGA 59.313 55.000 0.00 0.00 0.00 3.41
566 648 0.979665 TTCCAGCCTTCCAGACAGAG 59.020 55.000 0.00 0.00 0.00 3.35
567 649 0.906756 TCCAGCCTTCCAGACAGAGG 60.907 60.000 0.00 0.00 0.00 3.69
577 659 5.422214 TTCCAGACAGAGGGAGTAAATTC 57.578 43.478 0.00 0.00 34.02 2.17
599 681 0.460311 ATTCCGATCTCGTCCACCAC 59.540 55.000 0.00 0.00 37.74 4.16
619 701 1.875963 GCACATGCCACCACTGTAC 59.124 57.895 0.00 0.00 34.31 2.90
620 702 1.911293 GCACATGCCACCACTGTACG 61.911 60.000 0.00 0.00 34.31 3.67
621 703 0.320334 CACATGCCACCACTGTACGA 60.320 55.000 0.00 0.00 0.00 3.43
622 704 0.394938 ACATGCCACCACTGTACGAA 59.605 50.000 0.00 0.00 0.00 3.85
623 705 0.796312 CATGCCACCACTGTACGAAC 59.204 55.000 0.00 0.00 0.00 3.95
624 706 0.394938 ATGCCACCACTGTACGAACA 59.605 50.000 0.00 0.00 0.00 3.18
625 707 0.531090 TGCCACCACTGTACGAACAC 60.531 55.000 0.00 0.00 0.00 3.32
642 724 4.473199 GAACACCAGCGAGAAAAATAACC 58.527 43.478 0.00 0.00 0.00 2.85
645 727 3.000727 ACCAGCGAGAAAAATAACCGAG 58.999 45.455 0.00 0.00 0.00 4.63
646 728 2.351726 CCAGCGAGAAAAATAACCGAGG 59.648 50.000 0.00 0.00 0.00 4.63
647 729 2.351726 CAGCGAGAAAAATAACCGAGGG 59.648 50.000 0.00 0.00 0.00 4.30
653 735 6.617879 CGAGAAAAATAACCGAGGGATTTTT 58.382 36.000 20.20 20.20 42.52 1.94
660 742 8.542497 AAATAACCGAGGGATTTTTAAAAAGC 57.458 30.769 18.37 18.37 33.77 3.51
667 749 4.592778 AGGGATTTTTAAAAAGCTCCTGCA 59.407 37.500 25.25 2.92 35.45 4.41
691 773 4.555709 TGGACTGGCGTTGGCGTT 62.556 61.111 0.00 0.00 41.24 4.84
692 774 4.025401 GGACTGGCGTTGGCGTTG 62.025 66.667 0.00 0.00 41.24 4.10
693 775 4.025401 GACTGGCGTTGGCGTTGG 62.025 66.667 0.00 0.00 41.24 3.77
735 817 3.474486 TTGCTTCGTGCCTGCCTGA 62.474 57.895 1.30 0.00 42.00 3.86
737 819 2.684843 GCTTCGTGCCTGCCTGAAG 61.685 63.158 13.16 13.16 40.54 3.02
739 821 4.704833 TCGTGCCTGCCTGAAGCC 62.705 66.667 0.00 0.00 42.71 4.35
740 822 4.711949 CGTGCCTGCCTGAAGCCT 62.712 66.667 0.00 0.00 42.71 4.58
741 823 3.060615 GTGCCTGCCTGAAGCCTG 61.061 66.667 0.00 0.00 42.71 4.85
745 827 3.441290 CTGCCTGAAGCCTGCAGC 61.441 66.667 8.66 3.91 45.09 5.25
784 866 2.122729 CCTCCCCACTCCACTCCA 59.877 66.667 0.00 0.00 0.00 3.86
785 867 2.294078 CCTCCCCACTCCACTCCAC 61.294 68.421 0.00 0.00 0.00 4.02
788 870 3.330720 CCCACTCCACTCCACCCC 61.331 72.222 0.00 0.00 0.00 4.95
789 871 3.330720 CCACTCCACTCCACCCCC 61.331 72.222 0.00 0.00 0.00 5.40
790 872 3.706373 CACTCCACTCCACCCCCG 61.706 72.222 0.00 0.00 0.00 5.73
791 873 4.250170 ACTCCACTCCACCCCCGT 62.250 66.667 0.00 0.00 0.00 5.28
812 896 1.677820 CGGTCTACAAATCACCACCCC 60.678 57.143 0.00 0.00 0.00 4.95
813 897 1.353022 GGTCTACAAATCACCACCCCA 59.647 52.381 0.00 0.00 0.00 4.96
866 950 1.006043 CCCTCTCACCTCACCTGAGTA 59.994 57.143 1.69 0.00 40.48 2.59
897 981 2.348998 CTCCACTTCGCTTGCCCT 59.651 61.111 0.00 0.00 0.00 5.19
937 1054 3.083997 CCTCCCAAGTCCCGAGGG 61.084 72.222 0.65 0.65 44.22 4.30
991 1122 2.430921 CGTGACTGACAGACGCCC 60.431 66.667 10.08 0.00 0.00 6.13
995 1126 3.941657 GACTGACAGACGCCCAGCC 62.942 68.421 10.08 0.00 0.00 4.85
1119 1261 2.516225 GAGTACCCCCGCATTGCC 60.516 66.667 2.41 0.00 0.00 4.52
1163 1305 3.918258 TCGAAATTTATTCACTCGCCG 57.082 42.857 0.00 0.00 0.00 6.46
1184 1331 0.322546 GGATCTCCCGCAACCAACTT 60.323 55.000 0.00 0.00 0.00 2.66
1185 1332 1.534729 GATCTCCCGCAACCAACTTT 58.465 50.000 0.00 0.00 0.00 2.66
1186 1333 1.200020 GATCTCCCGCAACCAACTTTG 59.800 52.381 0.00 0.00 0.00 2.77
1187 1334 0.106918 TCTCCCGCAACCAACTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
1188 1335 0.030638 CTCCCGCAACCAACTTTGTG 59.969 55.000 0.00 0.00 36.84 3.33
1609 1862 0.246910 GGTTCGTCTCCCCTTCTGTC 59.753 60.000 0.00 0.00 0.00 3.51
1650 1903 0.402861 AGGAGGGGTTCAGGTTCCAA 60.403 55.000 0.00 0.00 0.00 3.53
1652 1905 0.609406 GAGGGGTTCAGGTTCCAAGC 60.609 60.000 0.00 0.00 0.00 4.01
1675 1928 6.311445 AGCGTTTGATTTCATCAGTGTACTAG 59.689 38.462 0.00 0.00 40.94 2.57
1676 1929 6.090898 GCGTTTGATTTCATCAGTGTACTAGT 59.909 38.462 0.00 0.00 40.94 2.57
1677 1930 7.274904 GCGTTTGATTTCATCAGTGTACTAGTA 59.725 37.037 0.00 0.00 40.94 1.82
1678 1931 8.799091 CGTTTGATTTCATCAGTGTACTAGTAG 58.201 37.037 1.87 0.00 40.94 2.57
1679 1932 9.640963 GTTTGATTTCATCAGTGTACTAGTAGT 57.359 33.333 8.14 8.14 40.94 2.73
1682 1935 8.900781 TGATTTCATCAGTGTACTAGTAGTACC 58.099 37.037 29.25 22.01 41.19 3.34
1707 1967 1.111277 GTGTTGACCCCTGTGCTTTT 58.889 50.000 0.00 0.00 0.00 2.27
1853 2127 5.295950 CACTTCTGAATTCTGTCTGTCTGT 58.704 41.667 7.05 0.00 0.00 3.41
1871 2529 1.209504 TGTCTGGCTATGTAGGTTGCC 59.790 52.381 0.00 0.00 45.10 4.52
1929 2587 0.919710 GGTGGCTCTTTCCCAGGTAT 59.080 55.000 0.00 0.00 31.89 2.73
1961 2623 4.479993 AGGACGGCCATGCTGCTC 62.480 66.667 11.69 0.00 38.71 4.26
2012 2680 7.767261 AGGCTTATGATTGTTACGCAATTTTA 58.233 30.769 0.00 0.00 46.90 1.52
2224 2893 6.833416 TCCCTGGTAATATTTCAAGACCATTG 59.167 38.462 7.36 3.33 39.40 2.82
2277 2946 3.568007 GGTGTCTGCAATTTACACTGGAA 59.432 43.478 16.26 0.00 42.46 3.53
2301 2977 4.634184 ATTCAGCAATTGAGCAGATCAC 57.366 40.909 10.34 0.00 37.77 3.06
2471 3147 4.486090 AGATATACTACGCAGCATTTCCG 58.514 43.478 0.00 0.00 0.00 4.30
2587 3263 0.679002 CACCATGCCCTCCTTCTGTG 60.679 60.000 0.00 0.00 0.00 3.66
2618 3294 1.086696 CATCGGTTGGCAGGTAACAG 58.913 55.000 0.00 0.00 41.41 3.16
2625 3301 3.290948 TTGGCAGGTAACAGACAACTT 57.709 42.857 0.00 0.00 44.87 2.66
2642 3318 1.285078 ACTTAACCCCTCCATTGCTCC 59.715 52.381 0.00 0.00 0.00 4.70
2670 3346 8.303156 CAGTTAGTCCATCTATCTGAATACTGG 58.697 40.741 6.97 0.00 43.62 4.00
2672 3348 8.861086 GTTAGTCCATCTATCTGAATACTGGAA 58.139 37.037 4.59 0.00 30.97 3.53
2677 3353 6.268617 CCATCTATCTGAATACTGGAAGGACA 59.731 42.308 0.00 0.00 39.30 4.02
2709 3386 7.327032 GCATCTTCTTACCTTCATTTGTTTGTC 59.673 37.037 0.00 0.00 0.00 3.18
2790 3467 5.891551 TGCTCTGTATCTGTGTAAGTGGATA 59.108 40.000 0.00 0.00 0.00 2.59
2796 3473 5.939764 ATCTGTGTAAGTGGATAGCAGAA 57.060 39.130 0.00 0.00 35.54 3.02
2797 3474 5.939764 TCTGTGTAAGTGGATAGCAGAAT 57.060 39.130 0.00 0.00 0.00 2.40
2804 3481 7.171678 GTGTAAGTGGATAGCAGAATATTGGTC 59.828 40.741 0.00 0.00 0.00 4.02
2858 3535 7.619050 ACAGTGTGATCTGAATACTGAAGATT 58.381 34.615 13.20 0.00 40.80 2.40
2859 3536 7.548427 ACAGTGTGATCTGAATACTGAAGATTG 59.452 37.037 13.20 0.00 40.80 2.67
2873 3550 9.950680 ATACTGAAGATTGTTTTTACACTGTTG 57.049 29.630 0.00 0.00 0.00 3.33
2918 3595 2.557317 CTAGGTTTGACACGTGTTGGT 58.443 47.619 24.26 7.34 0.00 3.67
2930 3607 2.262292 GTTGGTAGCCGGCGTGTA 59.738 61.111 23.20 5.06 0.00 2.90
2942 3619 1.726853 GGCGTGTAGTGCAGATTTCT 58.273 50.000 0.00 0.00 0.00 2.52
3114 3796 9.454859 CTGTATTCTTCCAGGAAAAGTTATTCT 57.545 33.333 2.72 0.00 0.00 2.40
3268 3950 3.487372 ACTGAAAGCAAAACTAGGTCCC 58.513 45.455 0.00 0.00 37.60 4.46
3277 3959 3.962718 CAAAACTAGGTCCCGGTATCCTA 59.037 47.826 0.00 8.42 33.34 2.94
3282 3964 6.259346 ACTAGGTCCCGGTATCCTATATAC 57.741 45.833 14.15 0.00 34.01 1.47
3291 3973 9.251440 TCCCGGTATCCTATATACATATATTGC 57.749 37.037 0.00 0.00 31.69 3.56
3307 3989 8.046708 ACATATATTGCTAGGAAAGTGTTGTCA 58.953 33.333 0.00 0.00 0.00 3.58
3352 4037 2.784347 AGTTTTAAGCTCCTGCACCTC 58.216 47.619 0.00 0.00 42.74 3.85
3353 4038 2.106511 AGTTTTAAGCTCCTGCACCTCA 59.893 45.455 0.00 0.00 42.74 3.86
3358 4043 1.227943 GCTCCTGCACCTCACACAA 60.228 57.895 0.00 0.00 39.41 3.33
3458 4143 1.529244 GGGCCCAATAATCGCAGCT 60.529 57.895 19.95 0.00 0.00 4.24
3496 4181 9.056005 TCTCTTTGCATATGTTGGTATGTATTC 57.944 33.333 4.29 0.00 35.09 1.75
3507 4192 8.301252 TGTTGGTATGTATTCTGAAGCTACTA 57.699 34.615 0.00 0.00 0.00 1.82
3543 4228 3.581755 CTGCTTTGTTCATGATGGTTGG 58.418 45.455 0.00 0.00 0.00 3.77
3547 4232 5.479724 TGCTTTGTTCATGATGGTTGGATTA 59.520 36.000 0.00 0.00 0.00 1.75
3666 4351 2.027385 GGATTCTCCTTGTTCATGGGC 58.973 52.381 0.00 0.00 32.53 5.36
3702 4387 6.313905 CACAGTATTTCAATGAGTACACCTCC 59.686 42.308 0.00 0.00 39.65 4.30
3780 4465 6.690194 AATCAAGTGCCAATATCTTCAGTC 57.310 37.500 0.00 0.00 0.00 3.51
3784 4469 6.988580 TCAAGTGCCAATATCTTCAGTCATAG 59.011 38.462 0.00 0.00 0.00 2.23
3802 4487 4.095932 TCATAGTAGCTACCAGTTGACACG 59.904 45.833 20.31 0.00 0.00 4.49
3804 4489 1.067776 GTAGCTACCAGTTGACACGCT 60.068 52.381 13.20 0.00 0.00 5.07
3824 4510 3.189287 GCTTGTGTCAAAGACCATTCGAT 59.811 43.478 0.00 0.00 0.00 3.59
3852 4538 2.905959 TTGCTCTGTGAAATGCGATG 57.094 45.000 0.00 0.00 0.00 3.84
3902 4588 3.533606 ACTGCAGTAATCAGGTGCTAG 57.466 47.619 20.16 0.00 38.09 3.42
3933 4621 6.633500 TTGGCTCAATTATAACAGCATACC 57.367 37.500 12.60 0.47 33.22 2.73
3934 4622 5.689835 TGGCTCAATTATAACAGCATACCA 58.310 37.500 12.60 2.61 33.22 3.25
3935 4623 5.530915 TGGCTCAATTATAACAGCATACCAC 59.469 40.000 12.60 0.00 33.22 4.16
3936 4624 5.530915 GGCTCAATTATAACAGCATACCACA 59.469 40.000 12.60 0.00 33.22 4.17
3937 4625 6.293626 GGCTCAATTATAACAGCATACCACAG 60.294 42.308 12.60 0.00 33.22 3.66
3938 4626 6.260936 GCTCAATTATAACAGCATACCACAGT 59.739 38.462 7.66 0.00 0.00 3.55
3943 4631 0.037326 ACAGCATACCACAGTCCACG 60.037 55.000 0.00 0.00 0.00 4.94
3960 4648 3.377485 TCCACGTAGCACTTGTAGAGATC 59.623 47.826 0.00 0.00 0.00 2.75
4003 4714 5.505181 AACATCTTGGTGGTGATACTCTT 57.495 39.130 0.00 0.00 0.00 2.85
4063 4798 5.646606 TGTTTTTGTGTTGCTTAACTCCTC 58.353 37.500 0.00 0.00 0.00 3.71
4070 4805 3.244561 TGTTGCTTAACTCCTCTTCCTGG 60.245 47.826 0.00 0.00 0.00 4.45
4098 4833 5.378230 TCCTCCTTTCACATGCTGAATAT 57.622 39.130 10.27 0.00 38.74 1.28
4099 4834 5.128205 TCCTCCTTTCACATGCTGAATATG 58.872 41.667 10.27 0.00 38.74 1.78
4100 4835 4.885907 CCTCCTTTCACATGCTGAATATGT 59.114 41.667 10.27 0.00 38.74 2.29
4103 4838 4.037208 CCTTTCACATGCTGAATATGTCCC 59.963 45.833 10.27 0.00 38.74 4.46
4104 4839 3.929955 TCACATGCTGAATATGTCCCA 57.070 42.857 0.00 0.00 36.67 4.37
4105 4840 4.233632 TCACATGCTGAATATGTCCCAA 57.766 40.909 0.00 0.00 36.67 4.12
4164 5004 3.684305 TCAATGACATGATCAACGTGGTC 59.316 43.478 0.00 3.89 41.93 4.02
4350 5190 2.623416 CAACCTCAACAAGTTCTTCCCC 59.377 50.000 0.00 0.00 0.00 4.81
4371 5211 3.468770 CTCCTTCTGATCCATGCTTCTG 58.531 50.000 0.00 0.00 0.00 3.02
4532 5372 8.140112 ACTGTTATGAGAAAATAGAGAGGTGT 57.860 34.615 0.00 0.00 0.00 4.16
4580 5420 7.881643 TGGGTCATCAATAAAACGAAAAATG 57.118 32.000 0.00 0.00 0.00 2.32
4633 5473 1.470098 GCATCTTGTTGAACCGCTGAT 59.530 47.619 0.00 0.00 0.00 2.90
4672 5512 8.896744 AGTATCTACGTATTTAACACTGCACTA 58.103 33.333 0.00 0.00 0.00 2.74
4676 5516 8.131100 TCTACGTATTTAACACTGCACTATACC 58.869 37.037 0.00 0.00 0.00 2.73
4698 5538 5.122082 ACCGAACGTTTAAACTTTGTCTCAA 59.878 36.000 14.14 0.00 0.00 3.02
4745 5585 0.036010 AACATGGACGCTTGAGAGGG 60.036 55.000 0.00 0.00 41.32 4.30
4803 5643 9.155975 CTGTTTAGAGTATGCTAGTTGAAACAT 57.844 33.333 0.00 0.00 0.00 2.71
4811 5651 3.005684 TGCTAGTTGAAACATGGGCAAAG 59.994 43.478 0.00 0.00 0.00 2.77
4852 5692 1.154150 GTCAGCGTTTGCCATCAGC 60.154 57.895 0.00 0.00 44.31 4.26
4895 5735 5.277974 CCGATCAAACTTTCAGTTGTGTGAT 60.278 40.000 0.00 0.00 38.66 3.06
4917 5757 7.330946 GTGATACACTGAGCTGTACAACATTTA 59.669 37.037 0.00 0.00 29.31 1.40
4947 5787 2.603075 AAGCTAATCCTGGGTGCAAA 57.397 45.000 0.00 0.00 0.00 3.68
4973 5813 4.848757 CTTGAAGCAAGCCGATTAATACC 58.151 43.478 0.00 0.00 34.63 2.73
4974 5814 3.879998 TGAAGCAAGCCGATTAATACCA 58.120 40.909 0.00 0.00 0.00 3.25
4975 5815 3.625764 TGAAGCAAGCCGATTAATACCAC 59.374 43.478 0.00 0.00 0.00 4.16
4976 5816 3.560636 AGCAAGCCGATTAATACCACT 57.439 42.857 0.00 0.00 0.00 4.00
4977 5817 3.467803 AGCAAGCCGATTAATACCACTC 58.532 45.455 0.00 0.00 0.00 3.51
4978 5818 2.548480 GCAAGCCGATTAATACCACTCC 59.452 50.000 0.00 0.00 0.00 3.85
4979 5819 3.744530 GCAAGCCGATTAATACCACTCCT 60.745 47.826 0.00 0.00 0.00 3.69
4980 5820 3.753294 AGCCGATTAATACCACTCCTG 57.247 47.619 0.00 0.00 0.00 3.86
4981 5821 2.143925 GCCGATTAATACCACTCCTGC 58.856 52.381 0.00 0.00 0.00 4.85
4982 5822 2.484770 GCCGATTAATACCACTCCTGCA 60.485 50.000 0.00 0.00 0.00 4.41
4983 5823 3.807209 GCCGATTAATACCACTCCTGCAT 60.807 47.826 0.00 0.00 0.00 3.96
4984 5824 4.562757 GCCGATTAATACCACTCCTGCATA 60.563 45.833 0.00 0.00 0.00 3.14
4985 5825 4.929808 CCGATTAATACCACTCCTGCATAC 59.070 45.833 0.00 0.00 0.00 2.39
4986 5826 5.279506 CCGATTAATACCACTCCTGCATACT 60.280 44.000 0.00 0.00 0.00 2.12
4987 5827 6.071560 CCGATTAATACCACTCCTGCATACTA 60.072 42.308 0.00 0.00 0.00 1.82
4989 5829 7.489435 CGATTAATACCACTCCTGCATACTATG 59.511 40.741 0.00 0.00 0.00 2.23
4991 5831 5.991933 ATACCACTCCTGCATACTATGAG 57.008 43.478 0.00 0.00 0.00 2.90
4992 5832 3.647636 ACCACTCCTGCATACTATGAGT 58.352 45.455 0.00 0.00 36.77 3.41
4993 5833 4.804597 ACCACTCCTGCATACTATGAGTA 58.195 43.478 0.00 0.00 34.68 2.59
4994 5834 5.208890 ACCACTCCTGCATACTATGAGTAA 58.791 41.667 0.00 0.00 33.89 2.24
4995 5835 5.841237 ACCACTCCTGCATACTATGAGTAAT 59.159 40.000 0.00 0.00 33.89 1.89
4996 5836 7.010771 ACCACTCCTGCATACTATGAGTAATA 58.989 38.462 0.00 0.00 33.89 0.98
4997 5837 7.676043 ACCACTCCTGCATACTATGAGTAATAT 59.324 37.037 0.00 0.00 33.89 1.28
4998 5838 9.190317 CCACTCCTGCATACTATGAGTAATATA 57.810 37.037 0.00 0.00 33.89 0.86
5000 5840 9.415008 ACTCCTGCATACTATGAGTAATATAGG 57.585 37.037 0.00 0.00 33.89 2.57
5050 5890 4.605183 ACTCCTCTGTATGTGCTTCTACT 58.395 43.478 0.00 0.00 0.00 2.57
5086 5926 4.752604 ACCAACAACAAAAACAACCAAGTC 59.247 37.500 0.00 0.00 0.00 3.01
5106 5946 4.222145 AGTCTTTCTGGTAGTTTCCGCATA 59.778 41.667 0.00 0.00 0.00 3.14
5138 5993 8.419435 GTGCAATTGATTAATATAATGTGTGCG 58.581 33.333 10.34 0.00 0.00 5.34
5179 6034 4.141018 AGTCCAAAACAAGTTGGGATAGGT 60.141 41.667 7.96 0.00 46.89 3.08
5204 6059 1.843368 CTGAAACCCATCAGTGGCAT 58.157 50.000 0.00 0.00 44.62 4.40
5274 6129 6.667558 ATTTCTTAGGTAATCCTAGGTCCG 57.332 41.667 9.08 0.00 45.71 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.739462 TAATTGCTGGCTGGTCGACG 60.739 55.000 9.92 0.00 0.00 5.12
3 4 1.448985 TTAATTGCTGGCTGGTCGAC 58.551 50.000 7.13 7.13 0.00 4.20
4 5 2.192664 TTTAATTGCTGGCTGGTCGA 57.807 45.000 0.00 0.00 0.00 4.20
5 6 3.508744 AATTTAATTGCTGGCTGGTCG 57.491 42.857 0.00 0.00 0.00 4.79
6 7 4.627035 GTGAAATTTAATTGCTGGCTGGTC 59.373 41.667 0.00 0.00 0.00 4.02
7 8 4.040217 TGTGAAATTTAATTGCTGGCTGGT 59.960 37.500 0.00 0.00 0.00 4.00
8 9 4.389687 GTGTGAAATTTAATTGCTGGCTGG 59.610 41.667 0.00 0.00 0.00 4.85
9 10 4.090354 CGTGTGAAATTTAATTGCTGGCTG 59.910 41.667 0.00 0.00 0.00 4.85
10 11 4.236935 CGTGTGAAATTTAATTGCTGGCT 58.763 39.130 0.00 0.00 0.00 4.75
11 12 3.367630 CCGTGTGAAATTTAATTGCTGGC 59.632 43.478 0.00 0.00 0.00 4.85
12 13 4.804108 TCCGTGTGAAATTTAATTGCTGG 58.196 39.130 0.00 0.00 0.00 4.85
13 14 6.949578 AATCCGTGTGAAATTTAATTGCTG 57.050 33.333 0.00 0.00 0.00 4.41
14 15 7.961325 AAAATCCGTGTGAAATTTAATTGCT 57.039 28.000 0.00 0.00 0.00 3.91
15 16 8.921670 AGTAAAATCCGTGTGAAATTTAATTGC 58.078 29.630 0.00 0.00 0.00 3.56
17 18 8.921670 GCAGTAAAATCCGTGTGAAATTTAATT 58.078 29.630 0.00 0.00 0.00 1.40
18 19 8.303876 AGCAGTAAAATCCGTGTGAAATTTAAT 58.696 29.630 0.00 0.00 0.00 1.40
19 20 7.653647 AGCAGTAAAATCCGTGTGAAATTTAA 58.346 30.769 0.00 0.00 0.00 1.52
20 21 7.209471 AGCAGTAAAATCCGTGTGAAATTTA 57.791 32.000 0.00 0.00 0.00 1.40
21 22 6.084326 AGCAGTAAAATCCGTGTGAAATTT 57.916 33.333 0.00 0.00 0.00 1.82
22 23 5.705609 AGCAGTAAAATCCGTGTGAAATT 57.294 34.783 0.00 0.00 0.00 1.82
23 24 5.616866 CGAAGCAGTAAAATCCGTGTGAAAT 60.617 40.000 0.00 0.00 0.00 2.17
24 25 4.319190 CGAAGCAGTAAAATCCGTGTGAAA 60.319 41.667 0.00 0.00 0.00 2.69
25 26 3.185594 CGAAGCAGTAAAATCCGTGTGAA 59.814 43.478 0.00 0.00 0.00 3.18
26 27 2.734606 CGAAGCAGTAAAATCCGTGTGA 59.265 45.455 0.00 0.00 0.00 3.58
27 28 3.103793 CGAAGCAGTAAAATCCGTGTG 57.896 47.619 0.00 0.00 0.00 3.82
43 44 0.165727 TAATTGCGTGTGCTGCGAAG 59.834 50.000 0.00 0.00 43.34 3.79
44 45 0.588737 TTAATTGCGTGTGCTGCGAA 59.411 45.000 0.00 0.00 43.34 4.70
45 46 0.801872 ATTAATTGCGTGTGCTGCGA 59.198 45.000 0.00 0.00 43.34 5.10
46 47 1.616620 AATTAATTGCGTGTGCTGCG 58.383 45.000 0.00 0.00 43.34 5.18
47 48 4.562394 ACATAAATTAATTGCGTGTGCTGC 59.438 37.500 0.39 0.00 43.34 5.25
48 49 6.630676 AACATAAATTAATTGCGTGTGCTG 57.369 33.333 0.39 0.00 43.34 4.41
49 50 7.359933 CCAAAACATAAATTAATTGCGTGTGCT 60.360 33.333 0.39 0.00 43.34 4.40
50 51 6.735957 CCAAAACATAAATTAATTGCGTGTGC 59.264 34.615 0.39 0.00 43.20 4.57
51 52 8.012151 TCCAAAACATAAATTAATTGCGTGTG 57.988 30.769 0.39 0.00 0.00 3.82
52 53 8.491950 GTTCCAAAACATAAATTAATTGCGTGT 58.508 29.630 0.39 4.74 35.36 4.49
53 54 7.682055 CGTTCCAAAACATAAATTAATTGCGTG 59.318 33.333 0.39 4.14 34.93 5.34
54 55 7.382759 ACGTTCCAAAACATAAATTAATTGCGT 59.617 29.630 0.39 0.00 34.93 5.24
55 56 7.682055 CACGTTCCAAAACATAAATTAATTGCG 59.318 33.333 0.39 0.00 34.93 4.85
56 57 7.477112 GCACGTTCCAAAACATAAATTAATTGC 59.523 33.333 0.39 0.00 34.93 3.56
57 58 8.491152 TGCACGTTCCAAAACATAAATTAATTG 58.509 29.630 0.39 0.00 34.93 2.32
58 59 8.594881 TGCACGTTCCAAAACATAAATTAATT 57.405 26.923 0.00 0.00 34.93 1.40
59 60 8.655092 CATGCACGTTCCAAAACATAAATTAAT 58.345 29.630 0.00 0.00 34.93 1.40
60 61 7.359598 GCATGCACGTTCCAAAACATAAATTAA 60.360 33.333 14.21 0.00 34.93 1.40
61 62 6.090088 GCATGCACGTTCCAAAACATAAATTA 59.910 34.615 14.21 0.00 34.93 1.40
62 63 5.107143 GCATGCACGTTCCAAAACATAAATT 60.107 36.000 14.21 0.00 34.93 1.82
63 64 4.388469 GCATGCACGTTCCAAAACATAAAT 59.612 37.500 14.21 0.00 34.93 1.40
64 65 3.738282 GCATGCACGTTCCAAAACATAAA 59.262 39.130 14.21 0.00 34.93 1.40
65 66 3.312828 GCATGCACGTTCCAAAACATAA 58.687 40.909 14.21 0.00 34.93 1.90
66 67 2.666895 CGCATGCACGTTCCAAAACATA 60.667 45.455 19.57 0.00 34.93 2.29
67 68 1.782044 GCATGCACGTTCCAAAACAT 58.218 45.000 14.21 0.00 34.93 2.71
68 69 0.593518 CGCATGCACGTTCCAAAACA 60.594 50.000 19.57 0.00 34.93 2.83
69 70 0.317436 TCGCATGCACGTTCCAAAAC 60.317 50.000 19.57 0.00 0.00 2.43
70 71 0.317436 GTCGCATGCACGTTCCAAAA 60.317 50.000 19.57 0.00 0.00 2.44
71 72 1.281353 GTCGCATGCACGTTCCAAA 59.719 52.632 19.57 0.00 0.00 3.28
72 73 2.942879 GTCGCATGCACGTTCCAA 59.057 55.556 19.57 0.00 0.00 3.53
73 74 3.410516 CGTCGCATGCACGTTCCA 61.411 61.111 24.88 0.00 32.41 3.53
74 75 4.794241 GCGTCGCATGCACGTTCC 62.794 66.667 29.66 17.50 39.54 3.62
82 83 4.833561 CTTCGCACGCGTCGCATG 62.834 66.667 25.50 14.21 40.74 4.06
85 86 4.470050 CTTCTTCGCACGCGTCGC 62.470 66.667 9.86 16.18 40.74 5.19
86 87 2.645510 AACTTCTTCGCACGCGTCG 61.646 57.895 9.86 16.70 40.74 5.12
87 88 1.154836 CAACTTCTTCGCACGCGTC 60.155 57.895 9.86 3.36 40.74 5.19
88 89 2.928361 CAACTTCTTCGCACGCGT 59.072 55.556 5.58 5.58 40.74 6.01
89 90 2.497628 GCAACTTCTTCGCACGCG 60.498 61.111 3.53 3.53 41.35 6.01
90 91 1.154580 GAGCAACTTCTTCGCACGC 60.155 57.895 0.00 0.00 0.00 5.34
91 92 1.128611 CGAGCAACTTCTTCGCACG 59.871 57.895 0.00 0.00 33.73 5.34
94 95 2.094724 CGCGAGCAACTTCTTCGC 59.905 61.111 0.00 7.93 44.99 4.70
95 96 1.678269 CCTCGCGAGCAACTTCTTCG 61.678 60.000 30.49 8.92 0.00 3.79
96 97 1.355066 CCCTCGCGAGCAACTTCTTC 61.355 60.000 30.49 0.00 0.00 2.87
97 98 1.374758 CCCTCGCGAGCAACTTCTT 60.375 57.895 30.49 0.00 0.00 2.52
98 99 2.262915 CCCTCGCGAGCAACTTCT 59.737 61.111 30.49 0.00 0.00 2.85
99 100 3.491652 GCCCTCGCGAGCAACTTC 61.492 66.667 30.49 10.62 0.00 3.01
126 127 2.514592 ATCGCAGGCACCATTCCG 60.515 61.111 0.00 0.00 0.00 4.30
127 128 3.113745 CATCGCAGGCACCATTCC 58.886 61.111 0.00 0.00 0.00 3.01
128 129 2.410469 GCATCGCAGGCACCATTC 59.590 61.111 0.00 0.00 0.00 2.67
129 130 3.142838 GGCATCGCAGGCACCATT 61.143 61.111 0.00 0.00 0.00 3.16
130 131 4.119363 AGGCATCGCAGGCACCAT 62.119 61.111 3.57 0.00 36.37 3.55
136 137 3.506096 CACAGCAGGCATCGCAGG 61.506 66.667 0.00 0.00 0.00 4.85
137 138 1.859427 AAACACAGCAGGCATCGCAG 61.859 55.000 0.00 0.00 0.00 5.18
138 139 1.855213 GAAACACAGCAGGCATCGCA 61.855 55.000 0.00 0.00 0.00 5.10
139 140 1.154150 GAAACACAGCAGGCATCGC 60.154 57.895 0.00 0.00 0.00 4.58
140 141 1.236616 TGGAAACACAGCAGGCATCG 61.237 55.000 0.00 0.00 33.40 3.84
141 142 2.644887 TGGAAACACAGCAGGCATC 58.355 52.632 0.00 0.00 33.40 3.91
142 143 4.927557 TGGAAACACAGCAGGCAT 57.072 50.000 0.00 0.00 33.40 4.40
151 152 3.290504 ACTCGACGAGGGTGGAAACAC 62.291 57.143 27.39 0.00 45.97 3.32
152 153 1.111116 ACTCGACGAGGGTGGAAACA 61.111 55.000 27.39 0.00 33.35 2.83
153 154 1.664306 ACTCGACGAGGGTGGAAAC 59.336 57.895 27.39 0.00 33.35 2.78
154 155 4.186136 ACTCGACGAGGGTGGAAA 57.814 55.556 27.39 0.00 33.35 3.13
159 160 2.623915 CGGTTCACTCGACGAGGGT 61.624 63.158 25.53 5.43 34.23 4.34
160 161 2.178521 CGGTTCACTCGACGAGGG 59.821 66.667 27.39 24.55 33.79 4.30
161 162 2.504244 GCGGTTCACTCGACGAGG 60.504 66.667 27.39 16.57 33.35 4.63
162 163 2.870161 CGCGGTTCACTCGACGAG 60.870 66.667 22.97 22.97 35.52 4.18
169 170 4.351938 TACTGCGCGCGGTTCACT 62.352 61.111 46.03 26.31 36.80 3.41
170 171 3.838795 CTACTGCGCGCGGTTCAC 61.839 66.667 46.03 15.04 36.80 3.18
171 172 2.860690 CTACTACTGCGCGCGGTTCA 62.861 60.000 46.03 30.25 36.80 3.18
172 173 2.202518 TACTACTGCGCGCGGTTC 60.203 61.111 46.03 15.87 36.80 3.62
173 174 1.647545 TACTACTACTGCGCGCGGTT 61.648 55.000 46.03 32.74 36.80 4.44
174 175 1.647545 TTACTACTACTGCGCGCGGT 61.648 55.000 43.10 43.10 39.18 5.68
175 176 0.928908 CTTACTACTACTGCGCGCGG 60.929 60.000 36.88 36.88 0.00 6.46
176 177 0.247974 ACTTACTACTACTGCGCGCG 60.248 55.000 28.44 28.44 0.00 6.86
177 178 1.189403 CACTTACTACTACTGCGCGC 58.811 55.000 27.26 27.26 0.00 6.86
178 179 2.159612 TGACACTTACTACTACTGCGCG 60.160 50.000 0.00 0.00 0.00 6.86
179 180 3.169733 GTGACACTTACTACTACTGCGC 58.830 50.000 0.00 0.00 0.00 6.09
180 181 3.120408 ACGTGACACTTACTACTACTGCG 60.120 47.826 3.68 0.00 0.00 5.18
181 182 4.083643 TGACGTGACACTTACTACTACTGC 60.084 45.833 3.68 0.00 0.00 4.40
182 183 5.602458 TGACGTGACACTTACTACTACTG 57.398 43.478 3.68 0.00 0.00 2.74
183 184 6.624352 TTTGACGTGACACTTACTACTACT 57.376 37.500 3.68 0.00 0.00 2.57
184 185 7.684062 TTTTTGACGTGACACTTACTACTAC 57.316 36.000 3.68 0.00 0.00 2.73
208 209 1.944032 AGCCGTACGTGACACTTTTT 58.056 45.000 15.21 0.00 0.00 1.94
209 210 1.862827 GAAGCCGTACGTGACACTTTT 59.137 47.619 15.21 0.00 0.00 2.27
210 211 1.202440 TGAAGCCGTACGTGACACTTT 60.202 47.619 15.21 0.00 0.00 2.66
211 212 0.386476 TGAAGCCGTACGTGACACTT 59.614 50.000 15.21 9.17 0.00 3.16
212 213 0.318445 GTGAAGCCGTACGTGACACT 60.318 55.000 15.21 0.44 0.00 3.55
213 214 1.280206 GGTGAAGCCGTACGTGACAC 61.280 60.000 15.21 16.54 0.00 3.67
214 215 1.007038 GGTGAAGCCGTACGTGACA 60.007 57.895 15.21 6.09 0.00 3.58
215 216 0.598158 TTGGTGAAGCCGTACGTGAC 60.598 55.000 15.21 3.22 41.21 3.67
216 217 0.598158 GTTGGTGAAGCCGTACGTGA 60.598 55.000 15.21 0.00 41.21 4.35
217 218 1.562575 GGTTGGTGAAGCCGTACGTG 61.563 60.000 15.21 6.95 41.21 4.49
218 219 1.301165 GGTTGGTGAAGCCGTACGT 60.301 57.895 15.21 0.00 41.21 3.57
219 220 2.377310 CGGTTGGTGAAGCCGTACG 61.377 63.158 8.69 8.69 40.53 3.67
252 253 4.910585 CGAGGTACCCATGCCGCC 62.911 72.222 8.74 0.00 35.31 6.13
269 271 2.095843 CCTTTACTTCACGCGCGC 59.904 61.111 32.58 23.91 0.00 6.86
271 273 2.095843 CGCCTTTACTTCACGCGC 59.904 61.111 5.73 0.00 36.02 6.86
272 274 2.776072 CCGCCTTTACTTCACGCG 59.224 61.111 3.53 3.53 42.37 6.01
276 278 1.669760 CACCGCCGCCTTTACTTCA 60.670 57.895 0.00 0.00 0.00 3.02
278 280 1.375523 CTCACCGCCGCCTTTACTT 60.376 57.895 0.00 0.00 0.00 2.24
431 462 1.901650 GCAAAAGCTCGGGTGACTCG 61.902 60.000 0.00 0.00 0.00 4.18
432 463 1.578206 GGCAAAAGCTCGGGTGACTC 61.578 60.000 0.00 0.00 0.00 3.36
462 493 1.250840 AATGAAACCGGGCTTGCCTC 61.251 55.000 6.32 1.47 0.00 4.70
469 502 1.022451 TAGTGCGAATGAAACCGGGC 61.022 55.000 6.32 0.00 0.00 6.13
470 503 0.725117 GTAGTGCGAATGAAACCGGG 59.275 55.000 6.32 0.00 0.00 5.73
471 504 0.368907 CGTAGTGCGAATGAAACCGG 59.631 55.000 0.00 0.00 44.77 5.28
477 510 1.141019 GCCTCCGTAGTGCGAATGA 59.859 57.895 0.81 0.00 44.77 2.57
494 542 2.480555 CGTGAAATGGTCCAGCGC 59.519 61.111 0.00 0.00 0.00 5.92
496 544 1.026718 CCTCCGTGAAATGGTCCAGC 61.027 60.000 0.00 0.00 45.66 4.85
497 545 0.324943 ACCTCCGTGAAATGGTCCAG 59.675 55.000 0.00 0.00 45.66 3.86
513 561 1.614241 CGATCCTCCCCGTGAAACCT 61.614 60.000 0.00 0.00 0.00 3.50
514 562 1.153429 CGATCCTCCCCGTGAAACC 60.153 63.158 0.00 0.00 0.00 3.27
515 563 1.814169 GCGATCCTCCCCGTGAAAC 60.814 63.158 0.00 0.00 0.00 2.78
516 564 1.832719 TTGCGATCCTCCCCGTGAAA 61.833 55.000 0.00 0.00 0.00 2.69
517 565 1.622607 ATTGCGATCCTCCCCGTGAA 61.623 55.000 0.00 0.00 0.00 3.18
518 566 2.063979 ATTGCGATCCTCCCCGTGA 61.064 57.895 0.00 0.00 0.00 4.35
519 567 1.889105 CATTGCGATCCTCCCCGTG 60.889 63.158 0.00 0.00 0.00 4.94
520 568 1.622607 TTCATTGCGATCCTCCCCGT 61.623 55.000 0.00 0.00 0.00 5.28
521 569 0.250467 ATTCATTGCGATCCTCCCCG 60.250 55.000 0.00 0.00 0.00 5.73
522 570 1.882623 GAATTCATTGCGATCCTCCCC 59.117 52.381 0.00 0.00 0.00 4.81
523 571 1.882623 GGAATTCATTGCGATCCTCCC 59.117 52.381 7.93 0.00 0.00 4.30
525 573 2.032549 CGTGGAATTCATTGCGATCCTC 60.033 50.000 7.93 0.00 0.00 3.71
553 635 2.534042 TACTCCCTCTGTCTGGAAGG 57.466 55.000 0.00 0.00 0.00 3.46
555 637 4.225267 GGAATTTACTCCCTCTGTCTGGAA 59.775 45.833 0.00 0.00 0.00 3.53
556 638 3.775316 GGAATTTACTCCCTCTGTCTGGA 59.225 47.826 0.00 0.00 0.00 3.86
557 639 4.143986 GGAATTTACTCCCTCTGTCTGG 57.856 50.000 0.00 0.00 0.00 3.86
567 649 4.974399 AGATCGGAATGGGAATTTACTCC 58.026 43.478 0.00 0.00 34.41 3.85
577 659 0.249489 GTGGACGAGATCGGAATGGG 60.249 60.000 7.22 0.00 44.95 4.00
605 687 0.394938 TGTTCGTACAGTGGTGGCAT 59.605 50.000 0.00 0.00 0.00 4.40
612 694 0.318360 TCGCTGGTGTTCGTACAGTG 60.318 55.000 0.00 0.00 42.45 3.66
613 695 0.039437 CTCGCTGGTGTTCGTACAGT 60.039 55.000 0.00 0.00 34.24 3.55
614 696 0.240145 TCTCGCTGGTGTTCGTACAG 59.760 55.000 0.00 0.00 34.24 2.74
615 697 0.669619 TTCTCGCTGGTGTTCGTACA 59.330 50.000 0.00 0.00 0.00 2.90
616 698 1.774639 TTTCTCGCTGGTGTTCGTAC 58.225 50.000 0.00 0.00 0.00 3.67
619 701 2.969443 ATTTTTCTCGCTGGTGTTCG 57.031 45.000 0.00 0.00 0.00 3.95
620 702 4.473199 GGTTATTTTTCTCGCTGGTGTTC 58.527 43.478 0.00 0.00 0.00 3.18
621 703 3.058501 CGGTTATTTTTCTCGCTGGTGTT 60.059 43.478 0.00 0.00 0.00 3.32
622 704 2.482721 CGGTTATTTTTCTCGCTGGTGT 59.517 45.455 0.00 0.00 0.00 4.16
623 705 2.739913 TCGGTTATTTTTCTCGCTGGTG 59.260 45.455 0.00 0.00 0.00 4.17
624 706 3.000727 CTCGGTTATTTTTCTCGCTGGT 58.999 45.455 0.00 0.00 0.00 4.00
625 707 2.351726 CCTCGGTTATTTTTCTCGCTGG 59.648 50.000 0.00 0.00 0.00 4.85
642 724 5.402398 CAGGAGCTTTTTAAAAATCCCTCG 58.598 41.667 21.71 12.06 30.75 4.63
645 727 4.893608 TGCAGGAGCTTTTTAAAAATCCC 58.106 39.130 21.71 17.64 42.74 3.85
646 728 4.389992 GCTGCAGGAGCTTTTTAAAAATCC 59.610 41.667 19.30 19.30 45.21 3.01
647 729 4.090498 CGCTGCAGGAGCTTTTTAAAAATC 59.910 41.667 17.12 9.83 46.64 2.17
653 735 1.586154 GGCGCTGCAGGAGCTTTTTA 61.586 55.000 17.12 0.00 46.64 1.52
781 863 3.660571 TAGACCGACGGGGGTGGA 61.661 66.667 20.00 0.00 41.40 4.02
784 866 0.906282 ATTTGTAGACCGACGGGGGT 60.906 55.000 20.00 4.42 44.89 4.95
785 867 0.179092 GATTTGTAGACCGACGGGGG 60.179 60.000 20.00 0.00 41.60 5.40
788 870 1.067425 TGGTGATTTGTAGACCGACGG 60.067 52.381 13.61 13.61 31.87 4.79
789 871 1.990563 GTGGTGATTTGTAGACCGACG 59.009 52.381 0.00 0.00 31.87 5.12
790 872 2.344025 GGTGGTGATTTGTAGACCGAC 58.656 52.381 0.00 0.00 31.87 4.79
791 873 1.276989 GGGTGGTGATTTGTAGACCGA 59.723 52.381 0.00 0.00 31.87 4.69
794 878 2.433436 GTGGGGTGGTGATTTGTAGAC 58.567 52.381 0.00 0.00 0.00 2.59
812 896 2.786495 CGTCCTCGAGATGGGGGTG 61.786 68.421 15.71 0.00 39.71 4.61
813 897 2.442272 CGTCCTCGAGATGGGGGT 60.442 66.667 15.71 0.00 39.71 4.95
866 950 0.318762 GTGGAGTGGAAAGCGACTCT 59.681 55.000 7.75 0.00 45.75 3.24
937 1054 2.035442 GTCGCCTCCTTGCTTGGTC 61.035 63.158 0.00 0.00 0.00 4.02
970 1094 1.442857 CGTCTGTCAGTCACGGCTC 60.443 63.158 6.25 0.00 0.00 4.70
1092 1234 2.513897 GGGTACTCACGCCATGGC 60.514 66.667 27.67 27.67 37.85 4.40
1184 1331 1.398692 GCAGGGTTTCAGTTCCACAA 58.601 50.000 0.00 0.00 0.00 3.33
1185 1332 0.467290 GGCAGGGTTTCAGTTCCACA 60.467 55.000 0.00 0.00 0.00 4.17
1186 1333 1.515521 CGGCAGGGTTTCAGTTCCAC 61.516 60.000 0.00 0.00 0.00 4.02
1187 1334 1.228124 CGGCAGGGTTTCAGTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
1188 1335 0.822121 AACGGCAGGGTTTCAGTTCC 60.822 55.000 0.00 0.00 0.00 3.62
1189 1336 0.310854 CAACGGCAGGGTTTCAGTTC 59.689 55.000 0.00 0.00 0.00 3.01
1580 1823 1.406447 GAGACGAACCTGACGACAAC 58.594 55.000 0.00 0.00 34.70 3.32
1609 1862 3.151022 GGGGACTGGCGAGAGGAG 61.151 72.222 1.44 0.00 0.00 3.69
1675 1928 4.216902 GGGGTCAACACAAATTGGTACTAC 59.783 45.833 0.00 0.00 0.00 2.73
1676 1929 4.105057 AGGGGTCAACACAAATTGGTACTA 59.895 41.667 0.00 0.00 0.00 1.82
1677 1930 3.117284 AGGGGTCAACACAAATTGGTACT 60.117 43.478 0.00 0.00 0.00 2.73
1678 1931 3.005367 CAGGGGTCAACACAAATTGGTAC 59.995 47.826 0.00 0.00 0.00 3.34
1679 1932 3.226777 CAGGGGTCAACACAAATTGGTA 58.773 45.455 0.00 0.00 0.00 3.25
1680 1933 2.038659 CAGGGGTCAACACAAATTGGT 58.961 47.619 0.00 0.00 0.00 3.67
1681 1934 2.038659 ACAGGGGTCAACACAAATTGG 58.961 47.619 0.00 0.00 0.00 3.16
1682 1935 2.802774 GCACAGGGGTCAACACAAATTG 60.803 50.000 0.00 0.00 0.00 2.32
1683 1936 1.412343 GCACAGGGGTCAACACAAATT 59.588 47.619 0.00 0.00 0.00 1.82
1871 2529 2.477825 AGACCGATCTCGATGCATTTG 58.522 47.619 0.00 0.00 43.02 2.32
1929 2587 3.205338 CCGTCCTGATGATGCAATGTAA 58.795 45.455 0.00 0.00 0.00 2.41
2012 2680 4.282957 CCAGATGAGGTATGTACTGCAGAT 59.717 45.833 23.35 6.13 0.00 2.90
2100 2768 1.069378 CGGTGAGGAAGAACGCGTAC 61.069 60.000 14.46 3.65 0.00 3.67
2214 2882 6.372659 ACAGCTATTCAGTAACAATGGTCTTG 59.627 38.462 0.00 0.00 0.00 3.02
2258 2927 5.689383 TTCTTCCAGTGTAAATTGCAGAC 57.311 39.130 0.00 0.00 0.00 3.51
2277 2946 4.948004 TGATCTGCTCAATTGCTGAATTCT 59.052 37.500 7.05 0.00 42.49 2.40
2454 3130 2.673074 GCGGAAATGCTGCGTAGTA 58.327 52.632 1.53 0.00 41.66 1.82
2483 3159 5.109903 AGTGTTATTCAGTCAATACTCGGC 58.890 41.667 0.00 0.00 31.97 5.54
2484 3160 5.749109 GGAGTGTTATTCAGTCAATACTCGG 59.251 44.000 0.00 0.00 45.47 4.63
2569 3245 0.842030 TCACAGAAGGAGGGCATGGT 60.842 55.000 0.00 0.00 0.00 3.55
2587 3263 0.460284 AACCGATGCCACGACTCATC 60.460 55.000 0.00 0.00 36.60 2.92
2618 3294 2.492088 GCAATGGAGGGGTTAAGTTGTC 59.508 50.000 0.00 0.00 0.00 3.18
2622 3298 1.285078 GGAGCAATGGAGGGGTTAAGT 59.715 52.381 0.00 0.00 0.00 2.24
2625 3301 1.912220 CGGAGCAATGGAGGGGTTA 59.088 57.895 0.00 0.00 0.00 2.85
2642 3318 4.837896 TCAGATAGATGGACTAACTGCG 57.162 45.455 0.00 0.00 45.45 5.18
2670 3346 7.240414 GTAAGAAGATGCTTACATGTCCTTC 57.760 40.000 0.00 7.18 45.95 3.46
2709 3386 1.750682 GCCAACCCCCTACATAAGCAG 60.751 57.143 0.00 0.00 0.00 4.24
2790 3467 3.285484 CTGCAAGGACCAATATTCTGCT 58.715 45.455 0.00 0.00 0.00 4.24
2796 3473 2.814805 AGCACTGCAAGGACCAATAT 57.185 45.000 3.30 0.00 39.30 1.28
2797 3474 2.584835 AAGCACTGCAAGGACCAATA 57.415 45.000 3.30 0.00 39.30 1.90
2804 3481 9.056005 TGAATAAAGTATATAAGCACTGCAAGG 57.944 33.333 3.30 0.00 39.30 3.61
2832 3509 6.997655 TCTTCAGTATTCAGATCACACTGTT 58.002 36.000 0.00 0.00 38.20 3.16
2833 3510 6.596309 TCTTCAGTATTCAGATCACACTGT 57.404 37.500 0.00 0.00 38.20 3.55
2834 3511 7.548427 ACAATCTTCAGTATTCAGATCACACTG 59.452 37.037 0.00 0.98 38.34 3.66
2858 3535 5.707242 TGTTCCACAACAGTGTAAAAACA 57.293 34.783 0.00 1.13 37.61 2.83
2870 3547 2.365293 AGCATTTTCCCTGTTCCACAAC 59.635 45.455 0.00 0.00 0.00 3.32
2872 3549 1.962807 CAGCATTTTCCCTGTTCCACA 59.037 47.619 0.00 0.00 0.00 4.17
2873 3550 1.273327 CCAGCATTTTCCCTGTTCCAC 59.727 52.381 0.00 0.00 0.00 4.02
2918 3595 3.350909 CTGCACTACACGCCGGCTA 62.351 63.158 26.68 9.49 0.00 3.93
2942 3619 5.104360 AGAGAAGAATAGCATAAACCCAGCA 60.104 40.000 0.00 0.00 0.00 4.41
3134 3816 9.851686 TCTATTAATGTATTCCTCTTGCATTGT 57.148 29.630 0.00 0.00 32.79 2.71
3282 3964 8.338259 GTGACAACACTTTCCTAGCAATATATG 58.662 37.037 0.00 0.00 42.99 1.78
3291 3973 6.128172 GGAATCATGTGACAACACTTTCCTAG 60.128 42.308 0.00 0.00 46.07 3.02
3307 3989 4.269844 GTGCAAAACAAAACGGAATCATGT 59.730 37.500 0.00 0.00 0.00 3.21
3352 4037 8.514594 AGATACAGTTCATGGTTATTTTGTGTG 58.485 33.333 0.00 0.00 0.00 3.82
3353 4038 8.514594 CAGATACAGTTCATGGTTATTTTGTGT 58.485 33.333 0.00 0.00 0.00 3.72
3358 4043 7.013655 GCCATCAGATACAGTTCATGGTTATTT 59.986 37.037 0.00 0.00 34.41 1.40
3507 4192 8.103305 TGAACAAAGCAGGATCTATTCTTTACT 58.897 33.333 0.00 0.00 0.00 2.24
3556 4241 5.211454 TGTTTGCACAGAAACAACATATCG 58.789 37.500 0.00 0.00 41.70 2.92
3666 4351 9.112725 TCATTGAAATACTGTGGAACTGATATG 57.887 33.333 0.00 0.00 39.30 1.78
3766 4451 8.247562 GGTAGCTACTATGACTGAAGATATTGG 58.752 40.741 22.74 0.00 0.00 3.16
3767 4452 8.797438 TGGTAGCTACTATGACTGAAGATATTG 58.203 37.037 22.74 0.00 0.00 1.90
3769 4454 8.167392 ACTGGTAGCTACTATGACTGAAGATAT 58.833 37.037 22.74 0.00 0.00 1.63
3770 4455 7.519057 ACTGGTAGCTACTATGACTGAAGATA 58.481 38.462 22.74 0.00 0.00 1.98
3771 4456 6.369629 ACTGGTAGCTACTATGACTGAAGAT 58.630 40.000 22.74 0.00 0.00 2.40
3772 4457 5.756918 ACTGGTAGCTACTATGACTGAAGA 58.243 41.667 22.74 0.00 0.00 2.87
3773 4458 6.095580 TCAACTGGTAGCTACTATGACTGAAG 59.904 42.308 22.74 5.67 0.00 3.02
3780 4465 4.352039 CGTGTCAACTGGTAGCTACTATG 58.648 47.826 22.74 13.29 0.00 2.23
3784 4469 1.067776 AGCGTGTCAACTGGTAGCTAC 60.068 52.381 15.88 15.88 0.00 3.58
3802 4487 2.548057 TCGAATGGTCTTTGACACAAGC 59.452 45.455 0.07 0.00 33.68 4.01
3804 4489 5.766150 AAATCGAATGGTCTTTGACACAA 57.234 34.783 0.00 0.00 33.68 3.33
3824 4510 6.565811 CGCATTTCACAGAGCAAACTACTAAA 60.566 38.462 0.00 0.00 0.00 1.85
3852 4538 4.691860 ATGCACTATTGTTGTTCTGAGC 57.308 40.909 0.00 0.00 0.00 4.26
3882 4568 2.419297 GCTAGCACCTGATTACTGCAGT 60.419 50.000 25.12 25.12 33.06 4.40
3926 4614 1.476891 CTACGTGGACTGTGGTATGCT 59.523 52.381 0.00 0.00 0.00 3.79
3933 4621 1.139989 CAAGTGCTACGTGGACTGTG 58.860 55.000 1.81 5.55 46.85 3.66
3934 4622 0.750850 ACAAGTGCTACGTGGACTGT 59.249 50.000 1.81 6.12 46.85 3.55
3935 4623 2.228103 TCTACAAGTGCTACGTGGACTG 59.772 50.000 1.81 5.57 46.85 3.51
3937 4625 2.486982 TCTCTACAAGTGCTACGTGGAC 59.513 50.000 1.81 2.13 37.27 4.02
3938 4626 2.786777 TCTCTACAAGTGCTACGTGGA 58.213 47.619 1.81 0.00 31.79 4.02
3943 4631 6.853872 CAGATTACGATCTCTACAAGTGCTAC 59.146 42.308 0.00 0.00 40.67 3.58
3960 4648 7.770801 TGTTTGGAATATCAGTCAGATTACG 57.229 36.000 0.00 0.00 38.19 3.18
4003 4714 6.726490 AGTGAGTGTAAAGAACCTGTAGAA 57.274 37.500 0.00 0.00 0.00 2.10
4053 4788 8.073467 GGATATATCCAGGAAGAGGAGTTAAG 57.927 42.308 24.41 0.00 46.38 1.85
4070 4805 6.705302 TCAGCATGTGAAAGGAGGATATATC 58.295 40.000 3.96 3.96 37.40 1.63
4098 4833 1.072173 CATCAGGTGTCACTTGGGACA 59.928 52.381 14.49 1.05 45.06 4.02
4099 4834 1.072331 ACATCAGGTGTCACTTGGGAC 59.928 52.381 14.49 0.00 35.77 4.46
4100 4835 1.434188 ACATCAGGTGTCACTTGGGA 58.566 50.000 14.49 0.00 35.77 4.37
4103 4838 4.129380 TGAGAAACATCAGGTGTCACTTG 58.871 43.478 8.75 8.75 41.14 3.16
4104 4839 4.422073 TGAGAAACATCAGGTGTCACTT 57.578 40.909 2.35 0.00 41.14 3.16
4105 4840 4.630644 ATGAGAAACATCAGGTGTCACT 57.369 40.909 2.35 0.00 41.14 3.41
4350 5190 3.134262 TCAGAAGCATGGATCAGAAGGAG 59.866 47.826 0.00 0.00 0.00 3.69
4371 5211 2.725206 GTGTCGTTTCCGTTCTCTCTTC 59.275 50.000 0.00 0.00 35.01 2.87
4572 5412 2.418714 GAACGAGCTACGCATTTTTCG 58.581 47.619 5.63 0.00 46.94 3.46
4577 5417 0.530744 TCAGGAACGAGCTACGCATT 59.469 50.000 5.63 0.00 46.94 3.56
4580 5420 0.100682 TGATCAGGAACGAGCTACGC 59.899 55.000 0.00 0.00 46.94 4.42
4590 5430 4.698780 CACAGCTGAAAGATTGATCAGGAA 59.301 41.667 23.35 0.00 42.62 3.36
4633 5473 5.561679 ACGTAGATACTCCAGATAGCATCA 58.438 41.667 0.00 0.00 0.00 3.07
4672 5512 6.479660 TGAGACAAAGTTTAAACGTTCGGTAT 59.520 34.615 15.35 9.65 0.00 2.73
4676 5516 6.016718 TGTTGAGACAAAGTTTAAACGTTCG 58.983 36.000 15.35 13.18 31.49 3.95
4698 5538 3.844211 TCCAAGGTACCAGCTTAGAATGT 59.156 43.478 15.94 0.00 33.64 2.71
4745 5585 5.477637 GGTGACAGGGTTATACTATCCTCTC 59.522 48.000 0.00 0.00 0.00 3.20
4803 5643 0.991146 TGCCTACATCTCTTTGCCCA 59.009 50.000 0.00 0.00 0.00 5.36
4811 5651 0.175760 TTGGTCGCTGCCTACATCTC 59.824 55.000 0.00 0.00 0.00 2.75
4837 5677 2.358615 TCGCTGATGGCAAACGCT 60.359 55.556 0.00 0.00 41.91 5.07
4852 5692 0.951040 GGAAGGACACAAGCTGGTCG 60.951 60.000 0.00 0.00 34.87 4.79
4853 5693 0.606673 GGGAAGGACACAAGCTGGTC 60.607 60.000 0.00 0.00 0.00 4.02
4854 5694 1.456287 GGGAAGGACACAAGCTGGT 59.544 57.895 0.00 0.00 0.00 4.00
4895 5735 7.713507 AGTTTAAATGTTGTACAGCTCAGTGTA 59.286 33.333 11.22 0.00 31.46 2.90
4917 5757 4.935808 CCAGGATTAGCTTACAACGAGTTT 59.064 41.667 0.00 0.00 0.00 2.66
4972 5812 5.791336 TTACTCATAGTATGCAGGAGTGG 57.209 43.478 5.18 0.00 39.07 4.00
4974 5814 9.415008 CCTATATTACTCATAGTATGCAGGAGT 57.585 37.037 5.18 6.39 41.37 3.85
4975 5815 9.634021 TCCTATATTACTCATAGTATGCAGGAG 57.366 37.037 5.18 0.52 29.64 3.69
4976 5816 9.990868 TTCCTATATTACTCATAGTATGCAGGA 57.009 33.333 5.18 4.52 29.64 3.86
4997 5837 9.555727 GCATTATTACTCTTACATGGTTTCCTA 57.444 33.333 0.00 0.00 0.00 2.94
4998 5838 8.052748 TGCATTATTACTCTTACATGGTTTCCT 58.947 33.333 0.00 0.00 0.00 3.36
4999 5839 8.220755 TGCATTATTACTCTTACATGGTTTCC 57.779 34.615 0.00 0.00 0.00 3.13
5013 5853 9.686683 ATACAGAGGAGTTTTTGCATTATTACT 57.313 29.630 0.00 0.00 0.00 2.24
5050 5890 8.693120 TTTTGTTGTTGGTAGATGGTATAACA 57.307 30.769 0.00 0.00 0.00 2.41
5086 5926 6.347725 GCATATATGCGGAAACTACCAGAAAG 60.348 42.308 21.33 0.00 44.67 2.62
5161 6016 5.710567 GCTCTAACCTATCCCAACTTGTTTT 59.289 40.000 0.00 0.00 0.00 2.43
5179 6034 3.307691 CCACTGATGGGTTTCAGCTCTAA 60.308 47.826 1.51 0.00 45.75 2.10
5251 6106 6.379579 TCGGACCTAGGATTACCTAAGAAAT 58.620 40.000 17.98 0.00 46.59 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.