Multiple sequence alignment - TraesCS5D01G498800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G498800 chr5D 100.000 3837 0 0 1 3837 528586156 528589992 0.000000e+00 7086.0
1 TraesCS5D01G498800 chr5D 94.569 2044 67 20 785 2793 528414954 528416988 0.000000e+00 3120.0
2 TraesCS5D01G498800 chr5D 90.385 1716 144 16 1052 2753 528296423 528294715 0.000000e+00 2235.0
3 TraesCS5D01G498800 chr5D 94.526 749 38 3 3091 3837 517377585 517376838 0.000000e+00 1153.0
4 TraesCS5D01G498800 chr5D 85.246 183 10 9 112 286 528414161 528414334 5.100000e-39 172.0
5 TraesCS5D01G498800 chr5D 88.189 127 9 3 423 543 326386429 326386555 3.090000e-31 147.0
6 TraesCS5D01G498800 chr5B 93.326 2562 107 27 574 3085 665539229 665541776 0.000000e+00 3725.0
7 TraesCS5D01G498800 chr5B 92.828 2217 88 31 623 2799 665173656 665171471 0.000000e+00 3147.0
8 TraesCS5D01G498800 chr5B 90.023 1714 157 13 1052 2753 665026437 665024726 0.000000e+00 2206.0
9 TraesCS5D01G498800 chr5B 93.210 324 19 2 1 322 665538654 665538976 1.250000e-129 473.0
10 TraesCS5D01G498800 chr5B 92.164 268 17 2 1 268 665184480 665184217 3.620000e-100 375.0
11 TraesCS5D01G498800 chr5B 87.594 266 16 3 170 422 665538976 665539237 3.750000e-75 292.0
12 TraesCS5D01G498800 chr5A 93.166 2517 110 20 621 3083 656670628 656673136 0.000000e+00 3639.0
13 TraesCS5D01G498800 chr5A 94.019 2023 81 10 800 2793 656493954 656495965 0.000000e+00 3029.0
14 TraesCS5D01G498800 chr5A 90.234 1710 145 15 1052 2753 656222598 656220903 0.000000e+00 2213.0
15 TraesCS5D01G498800 chr3D 94.533 750 39 1 3090 3837 430726887 430727636 0.000000e+00 1157.0
16 TraesCS5D01G498800 chr3D 94.400 750 40 1 3090 3837 89782607 89781858 0.000000e+00 1151.0
17 TraesCS5D01G498800 chr3D 94.400 750 40 1 3090 3837 177458327 177459076 0.000000e+00 1151.0
18 TraesCS5D01G498800 chr3D 94.400 750 40 1 3090 3837 450556325 450557074 0.000000e+00 1151.0
19 TraesCS5D01G498800 chr3D 87.097 124 7 5 422 536 45407405 45407528 8.650000e-27 132.0
20 TraesCS5D01G498800 chr2D 94.533 750 39 1 3090 3837 306407744 306406995 0.000000e+00 1157.0
21 TraesCS5D01G498800 chr2D 94.267 750 41 1 3090 3837 313205157 313204408 0.000000e+00 1146.0
22 TraesCS5D01G498800 chr2D 88.722 133 7 4 290 422 458487781 458487657 5.130000e-34 156.0
23 TraesCS5D01G498800 chr2D 82.237 152 17 5 279 422 527309102 527309251 5.210000e-24 122.0
24 TraesCS5D01G498800 chr1D 94.267 750 41 1 3090 3837 225528652 225527903 0.000000e+00 1146.0
25 TraesCS5D01G498800 chr1D 82.243 107 13 4 279 379 486062475 486062581 1.900000e-13 87.9
26 TraesCS5D01G498800 chr6D 94.133 750 42 1 3090 3837 68933344 68932595 0.000000e+00 1140.0
27 TraesCS5D01G498800 chr7B 86.652 442 54 4 1609 2046 706991894 706991454 5.760000e-133 484.0
28 TraesCS5D01G498800 chr2B 83.854 192 30 1 2037 2228 118043646 118043456 8.470000e-42 182.0
29 TraesCS5D01G498800 chr2B 86.667 120 7 4 421 531 741890047 741890166 1.450000e-24 124.0
30 TraesCS5D01G498800 chr2B 95.122 41 1 1 575 615 539345710 539345671 3.200000e-06 63.9
31 TraesCS5D01G498800 chr2B 92.683 41 2 1 575 615 539342881 539342842 1.490000e-04 58.4
32 TraesCS5D01G498800 chr2B 97.143 35 0 1 581 615 539346579 539346546 1.490000e-04 58.4
33 TraesCS5D01G498800 chr7D 89.062 128 7 4 423 543 574065521 574065648 6.640000e-33 152.0
34 TraesCS5D01G498800 chr7D 88.462 130 6 4 423 543 26002467 26002338 8.590000e-32 148.0
35 TraesCS5D01G498800 chr7A 87.402 127 10 2 424 544 521336245 521336371 1.440000e-29 141.0
36 TraesCS5D01G498800 chr7A 80.303 132 21 5 282 412 653678241 653678114 1.130000e-15 95.3
37 TraesCS5D01G498800 chr4B 84.444 135 13 5 414 542 506326523 506326391 4.020000e-25 126.0
38 TraesCS5D01G498800 chr3A 85.039 127 14 3 422 543 31826957 31826831 1.450000e-24 124.0
39 TraesCS5D01G498800 chr3A 83.495 103 13 4 1366 1466 32426561 32426661 4.080000e-15 93.5
40 TraesCS5D01G498800 chr1A 85.246 122 17 1 422 543 527787456 527787336 1.450000e-24 124.0
41 TraesCS5D01G498800 chr3B 89.552 67 5 1 355 421 757972632 757972568 2.460000e-12 84.2
42 TraesCS5D01G498800 chr3B 86.364 66 9 0 2404 2469 537434393 537434328 5.320000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G498800 chr5D 528586156 528589992 3836 False 7086.000000 7086 100.000000 1 3837 1 chr5D.!!$F2 3836
1 TraesCS5D01G498800 chr5D 528294715 528296423 1708 True 2235.000000 2235 90.385000 1052 2753 1 chr5D.!!$R2 1701
2 TraesCS5D01G498800 chr5D 528414161 528416988 2827 False 1646.000000 3120 89.907500 112 2793 2 chr5D.!!$F3 2681
3 TraesCS5D01G498800 chr5D 517376838 517377585 747 True 1153.000000 1153 94.526000 3091 3837 1 chr5D.!!$R1 746
4 TraesCS5D01G498800 chr5B 665171471 665173656 2185 True 3147.000000 3147 92.828000 623 2799 1 chr5B.!!$R2 2176
5 TraesCS5D01G498800 chr5B 665024726 665026437 1711 True 2206.000000 2206 90.023000 1052 2753 1 chr5B.!!$R1 1701
6 TraesCS5D01G498800 chr5B 665538654 665541776 3122 False 1496.666667 3725 91.376667 1 3085 3 chr5B.!!$F1 3084
7 TraesCS5D01G498800 chr5A 656670628 656673136 2508 False 3639.000000 3639 93.166000 621 3083 1 chr5A.!!$F2 2462
8 TraesCS5D01G498800 chr5A 656493954 656495965 2011 False 3029.000000 3029 94.019000 800 2793 1 chr5A.!!$F1 1993
9 TraesCS5D01G498800 chr5A 656220903 656222598 1695 True 2213.000000 2213 90.234000 1052 2753 1 chr5A.!!$R1 1701
10 TraesCS5D01G498800 chr3D 430726887 430727636 749 False 1157.000000 1157 94.533000 3090 3837 1 chr3D.!!$F3 747
11 TraesCS5D01G498800 chr3D 89781858 89782607 749 True 1151.000000 1151 94.400000 3090 3837 1 chr3D.!!$R1 747
12 TraesCS5D01G498800 chr3D 177458327 177459076 749 False 1151.000000 1151 94.400000 3090 3837 1 chr3D.!!$F2 747
13 TraesCS5D01G498800 chr3D 450556325 450557074 749 False 1151.000000 1151 94.400000 3090 3837 1 chr3D.!!$F4 747
14 TraesCS5D01G498800 chr2D 306406995 306407744 749 True 1157.000000 1157 94.533000 3090 3837 1 chr2D.!!$R1 747
15 TraesCS5D01G498800 chr2D 313204408 313205157 749 True 1146.000000 1146 94.267000 3090 3837 1 chr2D.!!$R2 747
16 TraesCS5D01G498800 chr1D 225527903 225528652 749 True 1146.000000 1146 94.267000 3090 3837 1 chr1D.!!$R1 747
17 TraesCS5D01G498800 chr6D 68932595 68933344 749 True 1140.000000 1140 94.133000 3090 3837 1 chr6D.!!$R1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 787 0.036732 TTCTTGTCAAGCTCCGCCAT 59.963 50.0 7.78 0.0 0.0 4.40 F
896 1396 0.173708 CGACCTCTTTTCCTCCTCCG 59.826 60.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2356 0.742281 CGAGGTAGACGACGAGGGAA 60.742 60.000 0.0 0.0 0.0 3.97 R
2894 3477 1.004320 TAAATCCGCACGCACCAGT 60.004 52.632 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.034685 TGGAATATTCATTGCTCAGACATTG 57.965 36.000 17.07 0.00 33.86 2.82
47 48 5.748402 TCATTGCTCAGACATTGGAATACT 58.252 37.500 0.00 0.00 0.00 2.12
48 49 5.587443 TCATTGCTCAGACATTGGAATACTG 59.413 40.000 0.00 0.00 0.00 2.74
58 59 7.777910 CAGACATTGGAATACTGGGGTTTTATA 59.222 37.037 0.00 0.00 0.00 0.98
168 171 5.699001 TGCATATCATACGGCGTAAGAAAAT 59.301 36.000 25.85 19.21 43.02 1.82
170 173 6.128661 GCATATCATACGGCGTAAGAAAATCA 60.129 38.462 25.85 11.31 43.02 2.57
288 447 0.115349 AGACCTCTAGGCAGTGGTGT 59.885 55.000 13.04 8.14 46.32 4.16
316 475 3.322466 AAGTCTGAGGGGGCCGTG 61.322 66.667 0.00 0.00 0.00 4.94
379 551 9.189156 ACTATGCATAGCTTAGATTTGGAAAAA 57.811 29.630 29.60 0.00 38.16 1.94
423 595 6.876789 TCCTAGTTGTTCATATTTTCGCTTCA 59.123 34.615 0.00 0.00 0.00 3.02
424 596 7.064609 TCCTAGTTGTTCATATTTTCGCTTCAG 59.935 37.037 0.00 0.00 0.00 3.02
425 597 6.560253 AGTTGTTCATATTTTCGCTTCAGT 57.440 33.333 0.00 0.00 0.00 3.41
426 598 6.970484 AGTTGTTCATATTTTCGCTTCAGTT 58.030 32.000 0.00 0.00 0.00 3.16
427 599 7.425606 AGTTGTTCATATTTTCGCTTCAGTTT 58.574 30.769 0.00 0.00 0.00 2.66
428 600 7.379529 AGTTGTTCATATTTTCGCTTCAGTTTG 59.620 33.333 0.00 0.00 0.00 2.93
429 601 6.734137 TGTTCATATTTTCGCTTCAGTTTGT 58.266 32.000 0.00 0.00 0.00 2.83
430 602 6.855914 TGTTCATATTTTCGCTTCAGTTTGTC 59.144 34.615 0.00 0.00 0.00 3.18
431 603 6.801539 TCATATTTTCGCTTCAGTTTGTCT 57.198 33.333 0.00 0.00 0.00 3.41
432 604 7.899178 TCATATTTTCGCTTCAGTTTGTCTA 57.101 32.000 0.00 0.00 0.00 2.59
433 605 8.317891 TCATATTTTCGCTTCAGTTTGTCTAA 57.682 30.769 0.00 0.00 0.00 2.10
434 606 8.946085 TCATATTTTCGCTTCAGTTTGTCTAAT 58.054 29.630 0.00 0.00 0.00 1.73
435 607 9.559958 CATATTTTCGCTTCAGTTTGTCTAATT 57.440 29.630 0.00 0.00 0.00 1.40
436 608 9.774742 ATATTTTCGCTTCAGTTTGTCTAATTC 57.225 29.630 0.00 0.00 0.00 2.17
437 609 6.612247 TTTCGCTTCAGTTTGTCTAATTCA 57.388 33.333 0.00 0.00 0.00 2.57
438 610 5.591643 TCGCTTCAGTTTGTCTAATTCAC 57.408 39.130 0.00 0.00 0.00 3.18
439 611 5.053811 TCGCTTCAGTTTGTCTAATTCACA 58.946 37.500 0.00 0.00 0.00 3.58
440 612 5.700832 TCGCTTCAGTTTGTCTAATTCACAT 59.299 36.000 0.00 0.00 0.00 3.21
441 613 6.017933 CGCTTCAGTTTGTCTAATTCACATC 58.982 40.000 0.00 0.00 0.00 3.06
442 614 6.128445 CGCTTCAGTTTGTCTAATTCACATCT 60.128 38.462 0.00 0.00 0.00 2.90
443 615 7.063426 CGCTTCAGTTTGTCTAATTCACATCTA 59.937 37.037 0.00 0.00 0.00 1.98
444 616 8.386606 GCTTCAGTTTGTCTAATTCACATCTAG 58.613 37.037 0.00 0.00 0.00 2.43
445 617 9.645059 CTTCAGTTTGTCTAATTCACATCTAGA 57.355 33.333 0.00 0.00 0.00 2.43
472 644 8.738645 ATTTTCTAAGGATGTCACATCTAACC 57.261 34.615 17.46 1.26 0.00 2.85
473 645 7.496346 TTTCTAAGGATGTCACATCTAACCT 57.504 36.000 17.46 3.80 0.00 3.50
474 646 7.496346 TTCTAAGGATGTCACATCTAACCTT 57.504 36.000 17.46 14.42 39.21 3.50
475 647 7.496346 TCTAAGGATGTCACATCTAACCTTT 57.504 36.000 17.46 5.80 37.44 3.11
476 648 7.556844 TCTAAGGATGTCACATCTAACCTTTC 58.443 38.462 17.46 0.00 37.44 2.62
477 649 5.762179 AGGATGTCACATCTAACCTTTCA 57.238 39.130 17.46 0.00 0.00 2.69
478 650 5.491982 AGGATGTCACATCTAACCTTTCAC 58.508 41.667 17.46 0.00 0.00 3.18
479 651 5.013079 AGGATGTCACATCTAACCTTTCACA 59.987 40.000 17.46 0.00 0.00 3.58
480 652 5.705441 GGATGTCACATCTAACCTTTCACAA 59.295 40.000 17.46 0.00 0.00 3.33
481 653 6.206634 GGATGTCACATCTAACCTTTCACAAA 59.793 38.462 17.46 0.00 0.00 2.83
482 654 7.094205 GGATGTCACATCTAACCTTTCACAAAT 60.094 37.037 17.46 0.00 0.00 2.32
483 655 8.862325 ATGTCACATCTAACCTTTCACAAATA 57.138 30.769 0.00 0.00 0.00 1.40
484 656 8.684386 TGTCACATCTAACCTTTCACAAATAA 57.316 30.769 0.00 0.00 0.00 1.40
485 657 8.783093 TGTCACATCTAACCTTTCACAAATAAG 58.217 33.333 0.00 0.00 0.00 1.73
486 658 8.237267 GTCACATCTAACCTTTCACAAATAAGG 58.763 37.037 0.00 0.00 45.19 2.69
487 659 7.029563 CACATCTAACCTTTCACAAATAAGGC 58.970 38.462 0.00 0.00 43.84 4.35
488 660 6.719370 ACATCTAACCTTTCACAAATAAGGCA 59.281 34.615 0.00 0.00 43.84 4.75
489 661 6.817765 TCTAACCTTTCACAAATAAGGCAG 57.182 37.500 0.00 0.00 43.84 4.85
490 662 3.942130 ACCTTTCACAAATAAGGCAGC 57.058 42.857 0.00 0.00 43.84 5.25
491 663 3.230134 ACCTTTCACAAATAAGGCAGCA 58.770 40.909 0.00 0.00 43.84 4.41
492 664 3.640967 ACCTTTCACAAATAAGGCAGCAA 59.359 39.130 0.00 0.00 43.84 3.91
493 665 3.989817 CCTTTCACAAATAAGGCAGCAAC 59.010 43.478 0.00 0.00 34.96 4.17
494 666 4.501229 CCTTTCACAAATAAGGCAGCAACA 60.501 41.667 0.00 0.00 34.96 3.33
495 667 4.662468 TTCACAAATAAGGCAGCAACAA 57.338 36.364 0.00 0.00 0.00 2.83
496 668 4.241590 TCACAAATAAGGCAGCAACAAG 57.758 40.909 0.00 0.00 0.00 3.16
497 669 3.005684 TCACAAATAAGGCAGCAACAAGG 59.994 43.478 0.00 0.00 0.00 3.61
498 670 3.005684 CACAAATAAGGCAGCAACAAGGA 59.994 43.478 0.00 0.00 0.00 3.36
499 671 3.640967 ACAAATAAGGCAGCAACAAGGAA 59.359 39.130 0.00 0.00 0.00 3.36
500 672 4.100808 ACAAATAAGGCAGCAACAAGGAAA 59.899 37.500 0.00 0.00 0.00 3.13
501 673 4.953940 AATAAGGCAGCAACAAGGAAAA 57.046 36.364 0.00 0.00 0.00 2.29
502 674 4.953940 ATAAGGCAGCAACAAGGAAAAA 57.046 36.364 0.00 0.00 0.00 1.94
541 713 7.538303 AAAAACCACAAACACAATGAAGATC 57.462 32.000 0.00 0.00 0.00 2.75
542 714 5.850557 AACCACAAACACAATGAAGATCA 57.149 34.783 0.00 0.00 0.00 2.92
543 715 6.409524 AACCACAAACACAATGAAGATCAT 57.590 33.333 0.00 0.00 39.09 2.45
544 716 7.523293 AACCACAAACACAATGAAGATCATA 57.477 32.000 0.00 0.00 35.76 2.15
545 717 7.523293 ACCACAAACACAATGAAGATCATAA 57.477 32.000 0.00 0.00 35.76 1.90
546 718 7.370383 ACCACAAACACAATGAAGATCATAAC 58.630 34.615 0.00 0.00 35.76 1.89
547 719 7.231317 ACCACAAACACAATGAAGATCATAACT 59.769 33.333 0.00 0.00 35.76 2.24
548 720 8.729756 CCACAAACACAATGAAGATCATAACTA 58.270 33.333 0.00 0.00 35.76 2.24
570 742 8.615878 ACTATATCACTCTAGATGTGACAGAC 57.384 38.462 20.31 0.00 45.57 3.51
571 743 6.892658 ATATCACTCTAGATGTGACAGACC 57.107 41.667 20.31 0.00 45.57 3.85
572 744 3.357203 TCACTCTAGATGTGACAGACCC 58.643 50.000 16.36 0.00 39.23 4.46
573 745 3.010696 TCACTCTAGATGTGACAGACCCT 59.989 47.826 16.36 0.00 39.23 4.34
574 746 3.766591 CACTCTAGATGTGACAGACCCTT 59.233 47.826 13.84 0.00 37.60 3.95
575 747 4.221703 CACTCTAGATGTGACAGACCCTTT 59.778 45.833 13.84 0.00 37.60 3.11
576 748 4.841246 ACTCTAGATGTGACAGACCCTTTT 59.159 41.667 0.00 0.00 0.00 2.27
577 749 5.308237 ACTCTAGATGTGACAGACCCTTTTT 59.692 40.000 0.00 0.00 0.00 1.94
578 750 5.551233 TCTAGATGTGACAGACCCTTTTTG 58.449 41.667 0.00 0.00 0.00 2.44
579 751 2.887152 AGATGTGACAGACCCTTTTTGC 59.113 45.455 0.00 0.00 0.00 3.68
580 752 2.435372 TGTGACAGACCCTTTTTGCT 57.565 45.000 0.00 0.00 0.00 3.91
581 753 2.733956 TGTGACAGACCCTTTTTGCTT 58.266 42.857 0.00 0.00 0.00 3.91
582 754 3.096092 TGTGACAGACCCTTTTTGCTTT 58.904 40.909 0.00 0.00 0.00 3.51
583 755 3.119173 TGTGACAGACCCTTTTTGCTTTG 60.119 43.478 0.00 0.00 0.00 2.77
584 756 2.430332 TGACAGACCCTTTTTGCTTTGG 59.570 45.455 0.00 0.00 0.00 3.28
585 757 1.138859 ACAGACCCTTTTTGCTTTGGC 59.861 47.619 0.00 0.00 39.26 4.52
586 758 0.758734 AGACCCTTTTTGCTTTGGCC 59.241 50.000 0.00 0.00 37.74 5.36
587 759 0.250295 GACCCTTTTTGCTTTGGCCC 60.250 55.000 0.00 0.00 37.74 5.80
615 787 0.036732 TTCTTGTCAAGCTCCGCCAT 59.963 50.000 7.78 0.00 0.00 4.40
616 788 0.391661 TCTTGTCAAGCTCCGCCATC 60.392 55.000 7.78 0.00 0.00 3.51
637 809 1.472376 GCCTCTAGGTGTGATGTGAGC 60.472 57.143 0.00 0.00 37.57 4.26
656 828 2.159156 AGCGTGAGTTGTGACACACTTA 60.159 45.455 8.05 3.42 42.80 2.24
720 893 4.333926 CCGATTCATTCCCTCAAGAACTTC 59.666 45.833 0.00 0.00 0.00 3.01
767 940 1.658596 CTTTCGTGGATTCGATTCGCA 59.341 47.619 0.00 0.00 39.57 5.10
893 1393 0.178900 ACCCGACCTCTTTTCCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
894 1394 0.537653 CCCGACCTCTTTTCCTCCTC 59.462 60.000 0.00 0.00 0.00 3.71
895 1395 0.537653 CCGACCTCTTTTCCTCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
896 1396 0.173708 CGACCTCTTTTCCTCCTCCG 59.826 60.000 0.00 0.00 0.00 4.63
897 1397 1.268066 GACCTCTTTTCCTCCTCCGT 58.732 55.000 0.00 0.00 0.00 4.69
898 1398 1.205179 GACCTCTTTTCCTCCTCCGTC 59.795 57.143 0.00 0.00 0.00 4.79
899 1399 0.537653 CCTCTTTTCCTCCTCCGTCC 59.462 60.000 0.00 0.00 0.00 4.79
900 1400 1.267121 CTCTTTTCCTCCTCCGTCCA 58.733 55.000 0.00 0.00 0.00 4.02
901 1401 1.834263 CTCTTTTCCTCCTCCGTCCAT 59.166 52.381 0.00 0.00 0.00 3.41
902 1402 1.555075 TCTTTTCCTCCTCCGTCCATG 59.445 52.381 0.00 0.00 0.00 3.66
915 1415 1.800586 CGTCCATGTCACACCAAGAAG 59.199 52.381 0.00 0.00 0.00 2.85
1028 1534 2.744709 GCAGGGTTTAAGCGGCGA 60.745 61.111 12.98 0.00 0.00 5.54
1154 1690 0.397816 ATCCGTAAGCTCCTCTGCCT 60.398 55.000 0.00 0.00 0.00 4.75
1156 1692 1.520342 CGTAAGCTCCTCTGCCTGC 60.520 63.158 0.00 0.00 0.00 4.85
1157 1693 1.153269 GTAAGCTCCTCTGCCTGCC 60.153 63.158 0.00 0.00 0.00 4.85
1158 1694 1.613332 TAAGCTCCTCTGCCTGCCA 60.613 57.895 0.00 0.00 0.00 4.92
1159 1695 1.620739 TAAGCTCCTCTGCCTGCCAG 61.621 60.000 0.00 0.00 43.17 4.85
1166 1711 2.514129 TCTGCCTGCCAGATCTCTC 58.486 57.895 0.00 0.00 45.44 3.20
1168 1713 2.302531 TCTGCCTGCCAGATCTCTCTG 61.303 57.143 0.00 0.00 45.44 3.35
1172 1717 2.109774 CCTGCCAGATCTCTCTGTCTT 58.890 52.381 0.00 0.00 46.33 3.01
1174 1720 3.523547 CTGCCAGATCTCTCTGTCTTTG 58.476 50.000 0.00 0.00 46.33 2.77
1193 1743 1.939934 TGCTCTGTTCGTTTGGTTGAG 59.060 47.619 0.00 0.00 0.00 3.02
1204 1762 0.751277 TTGGTTGAGGGCAGTGTGTG 60.751 55.000 0.00 0.00 0.00 3.82
1808 2384 4.051167 TCTACCTCGCGGGGTGGA 62.051 66.667 37.14 37.14 43.05 4.02
2894 3477 9.882996 ACGTATAGATCGTTCGTGATAATTAAA 57.117 29.630 5.35 0.00 38.38 1.52
2905 3488 4.095610 GTGATAATTAAACTGGTGCGTGC 58.904 43.478 0.00 0.00 0.00 5.34
3009 3599 6.235664 AGTTTCCAAACTAATCCGAAGCTTA 58.764 36.000 0.00 0.00 46.75 3.09
3038 3628 5.953183 TGCAGCACCACTTAAATAATCTTG 58.047 37.500 0.00 0.00 0.00 3.02
3043 3633 6.071391 AGCACCACTTAAATAATCTTGTTGGG 60.071 38.462 0.00 0.00 0.00 4.12
3045 3635 5.777732 ACCACTTAAATAATCTTGTTGGGCA 59.222 36.000 0.00 0.00 0.00 5.36
3046 3636 6.268847 ACCACTTAAATAATCTTGTTGGGCAA 59.731 34.615 0.00 0.00 35.50 4.52
3067 3657 1.131638 TATCCGGGCAGCTGAAATCT 58.868 50.000 20.43 0.00 0.00 2.40
3079 3669 2.847901 CTGAAATCTGCAAAGACGCTG 58.152 47.619 0.00 0.00 0.00 5.18
3085 3675 1.799258 CTGCAAAGACGCTGCCCTTT 61.799 55.000 8.34 8.34 39.13 3.11
3086 3676 0.536233 TGCAAAGACGCTGCCCTTTA 60.536 50.000 12.35 0.00 39.13 1.85
3087 3677 0.169009 GCAAAGACGCTGCCCTTTAG 59.831 55.000 12.35 9.29 33.51 1.85
3088 3678 1.523758 CAAAGACGCTGCCCTTTAGT 58.476 50.000 12.35 0.00 31.98 2.24
3102 3692 2.547855 CCTTTAGTGGCCCAAAAGTTGC 60.548 50.000 16.14 0.00 0.00 4.17
3110 3700 2.027837 GGCCCAAAAGTTGCATGAAGAT 60.028 45.455 0.00 0.00 0.00 2.40
3118 3708 7.011669 CCAAAAGTTGCATGAAGATTTGAACTT 59.988 33.333 0.00 0.00 34.47 2.66
3164 3754 0.032952 TCAACGTCCGGTTCTTCCTG 59.967 55.000 0.00 0.00 36.49 3.86
3176 3766 1.071471 CTTCCTGTCCGCAACACCT 59.929 57.895 0.00 0.00 33.24 4.00
3208 3798 3.181452 GGGGTGTAAGGTGCGGAATATTA 60.181 47.826 0.00 0.00 0.00 0.98
3242 3832 5.130145 CCCCTCATCACTAAGAAACTCATCT 59.870 44.000 0.00 0.00 0.00 2.90
3273 3863 2.443957 CTTGAACTCGGTGCCGTTGC 62.444 60.000 10.60 0.00 40.74 4.17
3362 3952 2.408565 TGTTGGGTCTCACTCTTCCTT 58.591 47.619 0.00 0.00 0.00 3.36
3368 3958 4.080015 TGGGTCTCACTCTTCCTTTTGAAA 60.080 41.667 0.00 0.00 31.06 2.69
3413 4003 7.715266 TGAATAATCATCCACAATCACCAAA 57.285 32.000 0.00 0.00 0.00 3.28
3521 4111 2.435120 TAGTCGTGGGAGGGTGAGCA 62.435 60.000 0.00 0.00 0.00 4.26
3552 4142 3.878778 AGCTTTCCTTCGATACAAGCAT 58.121 40.909 16.75 4.62 41.98 3.79
3587 4177 7.358352 CGATCTTTGGCAAAACTAACATTTGTC 60.358 37.037 14.43 0.00 41.54 3.18
3674 4266 2.275380 GCCAAAGCCATCCCACGTT 61.275 57.895 0.00 0.00 0.00 3.99
3682 4274 4.023726 AGCCATCCCACGTTAACTTTAA 57.976 40.909 3.71 0.00 0.00 1.52
3728 4320 4.753610 AGTGGGTCGCTCTAAAAAGTTAAC 59.246 41.667 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.020731 CATGGTAATATAAAACCCCAGTATTCC 57.979 37.037 4.81 0.00 34.69 3.01
47 48 9.556772 TTAAAACCATGGTAATATAAAACCCCA 57.443 29.630 20.12 0.00 34.69 4.96
81 82 5.683876 TCTTAGCCTTAGTTTGAGAGCAT 57.316 39.130 0.00 0.00 0.00 3.79
84 85 7.492994 GGTTGTATCTTAGCCTTAGTTTGAGAG 59.507 40.741 0.00 0.00 0.00 3.20
286 445 3.056536 CCTCAGACTTGCACTAAGCTACA 60.057 47.826 0.00 0.00 45.94 2.74
288 447 2.497675 CCCTCAGACTTGCACTAAGCTA 59.502 50.000 0.00 0.00 45.94 3.32
379 551 5.308976 AGGAGGGCAAACAATTGATTTTT 57.691 34.783 13.59 0.00 38.94 1.94
380 552 4.980339 AGGAGGGCAAACAATTGATTTT 57.020 36.364 13.59 0.00 38.94 1.82
381 553 5.086621 ACTAGGAGGGCAAACAATTGATTT 58.913 37.500 13.59 6.33 38.94 2.17
446 618 9.832445 GGTTAGATGTGACATCCTTAGAAAATA 57.168 33.333 21.05 2.00 0.00 1.40
447 619 8.552296 AGGTTAGATGTGACATCCTTAGAAAAT 58.448 33.333 21.05 2.95 0.00 1.82
448 620 7.918076 AGGTTAGATGTGACATCCTTAGAAAA 58.082 34.615 21.05 3.24 0.00 2.29
449 621 7.496346 AGGTTAGATGTGACATCCTTAGAAA 57.504 36.000 21.05 4.81 0.00 2.52
450 622 7.496346 AAGGTTAGATGTGACATCCTTAGAA 57.504 36.000 21.05 6.23 32.96 2.10
451 623 7.180229 TGAAAGGTTAGATGTGACATCCTTAGA 59.820 37.037 21.05 6.32 34.10 2.10
452 624 7.278868 GTGAAAGGTTAGATGTGACATCCTTAG 59.721 40.741 21.05 0.00 34.10 2.18
453 625 7.103641 GTGAAAGGTTAGATGTGACATCCTTA 58.896 38.462 21.05 6.22 34.10 2.69
454 626 5.940470 GTGAAAGGTTAGATGTGACATCCTT 59.060 40.000 21.05 14.91 35.68 3.36
455 627 5.013079 TGTGAAAGGTTAGATGTGACATCCT 59.987 40.000 21.05 9.66 0.00 3.24
456 628 5.245531 TGTGAAAGGTTAGATGTGACATCC 58.754 41.667 21.05 7.40 0.00 3.51
457 629 6.801539 TTGTGAAAGGTTAGATGTGACATC 57.198 37.500 17.46 17.46 0.00 3.06
458 630 7.765695 ATTTGTGAAAGGTTAGATGTGACAT 57.234 32.000 0.00 0.00 0.00 3.06
459 631 8.684386 TTATTTGTGAAAGGTTAGATGTGACA 57.316 30.769 0.00 0.00 0.00 3.58
460 632 8.237267 CCTTATTTGTGAAAGGTTAGATGTGAC 58.763 37.037 0.00 0.00 37.96 3.67
461 633 7.094377 GCCTTATTTGTGAAAGGTTAGATGTGA 60.094 37.037 3.28 0.00 43.55 3.58
462 634 7.029563 GCCTTATTTGTGAAAGGTTAGATGTG 58.970 38.462 3.28 0.00 43.55 3.21
463 635 6.719370 TGCCTTATTTGTGAAAGGTTAGATGT 59.281 34.615 3.28 0.00 43.55 3.06
464 636 7.156876 TGCCTTATTTGTGAAAGGTTAGATG 57.843 36.000 3.28 0.00 43.55 2.90
465 637 6.127619 GCTGCCTTATTTGTGAAAGGTTAGAT 60.128 38.462 3.28 0.00 43.55 1.98
466 638 5.183140 GCTGCCTTATTTGTGAAAGGTTAGA 59.817 40.000 3.28 0.00 43.55 2.10
467 639 5.048083 TGCTGCCTTATTTGTGAAAGGTTAG 60.048 40.000 0.00 3.86 43.55 2.34
468 640 4.830046 TGCTGCCTTATTTGTGAAAGGTTA 59.170 37.500 0.00 0.00 43.55 2.85
469 641 3.640967 TGCTGCCTTATTTGTGAAAGGTT 59.359 39.130 0.00 0.00 43.55 3.50
470 642 3.230134 TGCTGCCTTATTTGTGAAAGGT 58.770 40.909 0.00 0.00 43.55 3.50
471 643 3.940209 TGCTGCCTTATTTGTGAAAGG 57.060 42.857 0.00 0.00 44.32 3.11
472 644 4.619973 TGTTGCTGCCTTATTTGTGAAAG 58.380 39.130 0.00 0.00 0.00 2.62
473 645 4.662468 TGTTGCTGCCTTATTTGTGAAA 57.338 36.364 0.00 0.00 0.00 2.69
474 646 4.501229 CCTTGTTGCTGCCTTATTTGTGAA 60.501 41.667 0.00 0.00 0.00 3.18
475 647 3.005684 CCTTGTTGCTGCCTTATTTGTGA 59.994 43.478 0.00 0.00 0.00 3.58
476 648 3.005684 TCCTTGTTGCTGCCTTATTTGTG 59.994 43.478 0.00 0.00 0.00 3.33
477 649 3.230134 TCCTTGTTGCTGCCTTATTTGT 58.770 40.909 0.00 0.00 0.00 2.83
478 650 3.940209 TCCTTGTTGCTGCCTTATTTG 57.060 42.857 0.00 0.00 0.00 2.32
479 651 4.953940 TTTCCTTGTTGCTGCCTTATTT 57.046 36.364 0.00 0.00 0.00 1.40
480 652 4.953940 TTTTCCTTGTTGCTGCCTTATT 57.046 36.364 0.00 0.00 0.00 1.40
481 653 4.953940 TTTTTCCTTGTTGCTGCCTTAT 57.046 36.364 0.00 0.00 0.00 1.73
517 689 7.102346 TGATCTTCATTGTGTTTGTGGTTTTT 58.898 30.769 0.00 0.00 0.00 1.94
518 690 6.638610 TGATCTTCATTGTGTTTGTGGTTTT 58.361 32.000 0.00 0.00 0.00 2.43
519 691 6.219417 TGATCTTCATTGTGTTTGTGGTTT 57.781 33.333 0.00 0.00 0.00 3.27
520 692 5.850557 TGATCTTCATTGTGTTTGTGGTT 57.149 34.783 0.00 0.00 0.00 3.67
521 693 7.231317 AGTTATGATCTTCATTGTGTTTGTGGT 59.769 33.333 0.00 0.00 38.26 4.16
522 694 7.596494 AGTTATGATCTTCATTGTGTTTGTGG 58.404 34.615 0.00 0.00 38.26 4.17
544 716 9.062524 GTCTGTCACATCTAGAGTGATATAGTT 57.937 37.037 20.62 0.00 46.52 2.24
545 717 7.663905 GGTCTGTCACATCTAGAGTGATATAGT 59.336 40.741 20.62 0.30 46.52 2.12
546 718 7.120579 GGGTCTGTCACATCTAGAGTGATATAG 59.879 44.444 20.62 18.41 46.52 1.31
547 719 6.943146 GGGTCTGTCACATCTAGAGTGATATA 59.057 42.308 20.62 12.35 46.52 0.86
548 720 5.772672 GGGTCTGTCACATCTAGAGTGATAT 59.227 44.000 20.62 0.00 46.52 1.63
549 721 5.103898 AGGGTCTGTCACATCTAGAGTGATA 60.104 44.000 20.62 18.01 46.52 2.15
550 722 3.957497 GGGTCTGTCACATCTAGAGTGAT 59.043 47.826 20.62 0.00 46.52 3.06
551 723 3.010696 AGGGTCTGTCACATCTAGAGTGA 59.989 47.826 16.36 16.36 43.23 3.41
552 724 3.360867 AGGGTCTGTCACATCTAGAGTG 58.639 50.000 13.19 13.19 38.32 3.51
553 725 3.748645 AGGGTCTGTCACATCTAGAGT 57.251 47.619 0.00 0.00 0.00 3.24
554 726 5.413309 AAAAGGGTCTGTCACATCTAGAG 57.587 43.478 0.00 0.00 0.00 2.43
555 727 5.551233 CAAAAAGGGTCTGTCACATCTAGA 58.449 41.667 0.00 0.00 0.00 2.43
556 728 4.154918 GCAAAAAGGGTCTGTCACATCTAG 59.845 45.833 0.00 0.00 0.00 2.43
557 729 4.072131 GCAAAAAGGGTCTGTCACATCTA 58.928 43.478 0.00 0.00 0.00 1.98
558 730 2.887152 GCAAAAAGGGTCTGTCACATCT 59.113 45.455 0.00 0.00 0.00 2.90
559 731 2.887152 AGCAAAAAGGGTCTGTCACATC 59.113 45.455 0.00 0.00 0.00 3.06
560 732 2.949447 AGCAAAAAGGGTCTGTCACAT 58.051 42.857 0.00 0.00 0.00 3.21
561 733 2.435372 AGCAAAAAGGGTCTGTCACA 57.565 45.000 0.00 0.00 0.00 3.58
562 734 3.447742 CAAAGCAAAAAGGGTCTGTCAC 58.552 45.455 0.00 0.00 0.00 3.67
563 735 2.430332 CCAAAGCAAAAAGGGTCTGTCA 59.570 45.455 0.00 0.00 0.00 3.58
564 736 2.803133 GCCAAAGCAAAAAGGGTCTGTC 60.803 50.000 0.00 0.00 39.53 3.51
565 737 1.138859 GCCAAAGCAAAAAGGGTCTGT 59.861 47.619 0.00 0.00 39.53 3.41
566 738 1.541015 GGCCAAAGCAAAAAGGGTCTG 60.541 52.381 0.00 0.00 42.56 3.51
567 739 0.758734 GGCCAAAGCAAAAAGGGTCT 59.241 50.000 0.00 0.00 42.56 3.85
568 740 0.250295 GGGCCAAAGCAAAAAGGGTC 60.250 55.000 4.39 0.00 42.56 4.46
569 741 1.705002 GGGGCCAAAGCAAAAAGGGT 61.705 55.000 4.39 0.00 42.56 4.34
570 742 1.073025 GGGGCCAAAGCAAAAAGGG 59.927 57.895 4.39 0.00 42.56 3.95
571 743 1.073025 GGGGGCCAAAGCAAAAAGG 59.927 57.895 4.39 0.00 42.56 3.11
572 744 4.798433 GGGGGCCAAAGCAAAAAG 57.202 55.556 4.39 0.00 42.56 2.27
586 758 2.943199 GCTTGACAAGAATCTCAGGGGG 60.943 54.545 19.51 0.00 0.00 5.40
587 759 2.026449 AGCTTGACAAGAATCTCAGGGG 60.026 50.000 19.51 0.00 0.00 4.79
590 762 2.928757 CGGAGCTTGACAAGAATCTCAG 59.071 50.000 19.51 12.04 0.00 3.35
615 787 0.817654 CACATCACACCTAGAGGCGA 59.182 55.000 0.00 0.00 39.32 5.54
616 788 0.817654 TCACATCACACCTAGAGGCG 59.182 55.000 0.00 0.00 39.32 5.52
720 893 5.060446 GGCCTCGTTTTTGTGATTTTTATCG 59.940 40.000 0.00 0.00 0.00 2.92
893 1393 0.034756 CTTGGTGTGACATGGACGGA 59.965 55.000 0.00 0.00 0.00 4.69
894 1394 0.034756 TCTTGGTGTGACATGGACGG 59.965 55.000 0.00 0.00 0.00 4.79
895 1395 1.800586 CTTCTTGGTGTGACATGGACG 59.199 52.381 0.00 0.00 0.00 4.79
896 1396 1.537202 GCTTCTTGGTGTGACATGGAC 59.463 52.381 0.00 0.00 0.00 4.02
897 1397 1.142667 TGCTTCTTGGTGTGACATGGA 59.857 47.619 0.00 0.00 0.00 3.41
898 1398 1.267806 GTGCTTCTTGGTGTGACATGG 59.732 52.381 0.00 0.00 0.00 3.66
899 1399 1.948834 TGTGCTTCTTGGTGTGACATG 59.051 47.619 0.00 0.00 0.00 3.21
900 1400 2.158769 TCTGTGCTTCTTGGTGTGACAT 60.159 45.455 0.00 0.00 0.00 3.06
901 1401 1.209261 TCTGTGCTTCTTGGTGTGACA 59.791 47.619 0.00 0.00 0.00 3.58
902 1402 1.953559 TCTGTGCTTCTTGGTGTGAC 58.046 50.000 0.00 0.00 0.00 3.67
1028 1534 3.009115 CCCACTCCCCATCACCGT 61.009 66.667 0.00 0.00 0.00 4.83
1113 1637 4.740822 AACATGGCGGCCCTCCAC 62.741 66.667 17.97 0.00 36.26 4.02
1156 1692 3.448301 AGAGCAAAGACAGAGAGATCTGG 59.552 47.826 0.00 0.00 41.76 3.86
1157 1693 4.082081 ACAGAGCAAAGACAGAGAGATCTG 60.082 45.833 0.00 0.00 43.03 2.90
1158 1694 4.088634 ACAGAGCAAAGACAGAGAGATCT 58.911 43.478 0.00 0.00 0.00 2.75
1159 1695 4.454728 ACAGAGCAAAGACAGAGAGATC 57.545 45.455 0.00 0.00 0.00 2.75
1160 1696 4.617995 CGAACAGAGCAAAGACAGAGAGAT 60.618 45.833 0.00 0.00 0.00 2.75
1166 1711 3.546815 CCAAACGAACAGAGCAAAGACAG 60.547 47.826 0.00 0.00 0.00 3.51
1168 1713 2.354821 ACCAAACGAACAGAGCAAAGAC 59.645 45.455 0.00 0.00 0.00 3.01
1172 1717 2.354510 CTCAACCAAACGAACAGAGCAA 59.645 45.455 0.00 0.00 0.00 3.91
1174 1720 1.264288 CCTCAACCAAACGAACAGAGC 59.736 52.381 0.00 0.00 0.00 4.09
1193 1743 0.028902 GAAACGTTCACACACTGCCC 59.971 55.000 0.00 0.00 0.00 5.36
1204 1762 6.020201 CCAAAACCATACAACAAGAAACGTTC 60.020 38.462 0.00 0.00 0.00 3.95
1780 2356 0.742281 CGAGGTAGACGACGAGGGAA 60.742 60.000 0.00 0.00 0.00 3.97
1964 2540 2.044555 CGAGACACCGGAGCTGGTA 61.045 63.158 9.46 0.00 41.38 3.25
2034 2610 4.796231 GCGTCACCGTCGCCAGAT 62.796 66.667 0.00 0.00 46.61 2.90
2736 3312 2.095161 GTCTGCTGCTTGTACGAGTACT 60.095 50.000 11.83 0.00 37.00 2.73
2894 3477 1.004320 TAAATCCGCACGCACCAGT 60.004 52.632 0.00 0.00 0.00 4.00
2905 3488 8.450964 ACATGTTTATCAACTGAACTAAATCCG 58.549 33.333 0.00 0.00 33.58 4.18
2935 3518 7.164662 CACGATCGTCGATTACTAACAAACATA 59.835 37.037 19.84 0.00 43.74 2.29
3009 3599 0.250858 TAAGTGGTGCTGCATGCTGT 60.251 50.000 23.42 6.64 43.37 4.40
3030 3620 5.243730 CCGGATATTTGCCCAACAAGATTAT 59.756 40.000 0.00 0.00 40.06 1.28
3038 3628 1.040339 TGCCCGGATATTTGCCCAAC 61.040 55.000 0.73 0.00 0.00 3.77
3043 3633 0.819259 TCAGCTGCCCGGATATTTGC 60.819 55.000 9.47 0.00 0.00 3.68
3045 3635 2.435372 TTTCAGCTGCCCGGATATTT 57.565 45.000 9.47 0.00 0.00 1.40
3046 3636 2.107204 AGATTTCAGCTGCCCGGATATT 59.893 45.455 9.47 0.00 0.00 1.28
3067 3657 0.536233 TAAAGGGCAGCGTCTTTGCA 60.536 50.000 17.60 0.00 43.28 4.08
3085 3675 1.617850 CATGCAACTTTTGGGCCACTA 59.382 47.619 5.23 0.00 0.00 2.74
3086 3676 0.393820 CATGCAACTTTTGGGCCACT 59.606 50.000 5.23 0.00 0.00 4.00
3087 3677 0.392336 TCATGCAACTTTTGGGCCAC 59.608 50.000 5.23 0.00 0.00 5.01
3088 3678 1.070445 CTTCATGCAACTTTTGGGCCA 59.930 47.619 0.00 0.00 0.00 5.36
3123 3713 0.099436 GATGCGGCAAGAACCATGAC 59.901 55.000 6.82 0.00 0.00 3.06
3131 3721 1.368345 CGTTGATGGATGCGGCAAGA 61.368 55.000 6.82 0.00 0.00 3.02
3164 3754 2.287393 AACAAAAAGGTGTTGCGGAC 57.713 45.000 0.00 0.00 40.22 4.79
3176 3766 3.702045 CACCTTACACCCCTCAACAAAAA 59.298 43.478 0.00 0.00 0.00 1.94
3208 3798 1.002069 TGATGAGGGGGTCAAGCATT 58.998 50.000 0.00 0.00 39.19 3.56
3273 3863 6.456181 GCAAAGATCTTGACGATAAGAAGTGG 60.456 42.308 9.17 2.54 39.87 4.00
3413 4003 4.850386 AGTCTTGGGGGTAGAAAGTATTGT 59.150 41.667 0.00 0.00 0.00 2.71
3521 4111 5.344743 TCGAAGGAAAGCTACATGAGAAT 57.655 39.130 0.00 0.00 0.00 2.40
3552 4142 0.039256 GCCAAAGATCGTGCTTGCAA 60.039 50.000 0.00 0.00 0.00 4.08
3587 4177 2.436646 GGGCATGTCCGTGGACTG 60.437 66.667 19.17 14.91 44.80 3.51
3674 4266 5.065474 GCGACATGCCTAATGGTTAAAGTTA 59.935 40.000 0.00 0.00 40.94 2.24
3682 4274 1.523711 CCGCGACATGCCTAATGGT 60.524 57.895 8.23 0.00 40.94 3.55
3728 4320 3.314357 TGTCGAGAACGGTCTATATGTGG 59.686 47.826 1.02 0.00 40.21 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.