Multiple sequence alignment - TraesCS5D01G498600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G498600 chr5D 100.000 4019 0 0 1 4019 528400902 528404920 0.000000e+00 7422.0
1 TraesCS5D01G498600 chr5D 87.828 419 34 9 3545 3956 528555715 528556123 3.630000e-130 475.0
2 TraesCS5D01G498600 chr5D 90.173 173 16 1 1075 1247 291501081 291500910 1.450000e-54 224.0
3 TraesCS5D01G498600 chr5D 81.081 259 20 6 984 1242 28561543 28561772 3.190000e-41 180.0
4 TraesCS5D01G498600 chr5D 84.236 203 13 4 2568 2767 528417125 528417311 3.190000e-41 180.0
5 TraesCS5D01G498600 chr5D 90.179 112 10 1 504 614 545279913 545279802 1.160000e-30 145.0
6 TraesCS5D01G498600 chr5D 90.826 109 6 1 513 621 507553714 507553610 4.190000e-30 143.0
7 TraesCS5D01G498600 chr5B 92.416 3402 136 77 625 3956 665209248 665205899 0.000000e+00 4741.0
8 TraesCS5D01G498600 chr5B 93.750 352 6 4 1 338 704108250 704108599 7.700000e-142 514.0
9 TraesCS5D01G498600 chr5B 92.286 350 7 5 1 336 577080704 577081047 2.810000e-131 479.0
10 TraesCS5D01G498600 chr5B 84.906 265 21 8 2506 2767 665171364 665171116 2.400000e-62 250.0
11 TraesCS5D01G498600 chr5B 90.173 173 16 1 1075 1247 332203005 332202834 1.450000e-54 224.0
12 TraesCS5D01G498600 chr5B 86.813 182 18 3 3585 3765 665522314 665522490 8.810000e-47 198.0
13 TraesCS5D01G498600 chr5B 91.743 109 5 1 509 617 625959563 625959459 9.000000e-32 148.0
14 TraesCS5D01G498600 chr5B 97.183 71 0 2 3950 4019 639978904 639978973 7.060000e-23 119.0
15 TraesCS5D01G498600 chr5B 83.333 114 10 5 3843 3956 665522506 665522610 3.310000e-16 97.1
16 TraesCS5D01G498600 chr5A 90.794 2053 114 39 1956 3956 656467849 656469878 0.000000e+00 2675.0
17 TraesCS5D01G498600 chr5A 90.616 1396 73 28 666 2007 656466458 656467849 0.000000e+00 1799.0
18 TraesCS5D01G498600 chr5A 84.241 514 45 18 3354 3833 656652392 656652903 6.080000e-128 468.0
19 TraesCS5D01G498600 chr5A 90.751 173 15 1 1075 1247 383883161 383882990 3.120000e-56 230.0
20 TraesCS5D01G498600 chr5A 86.607 112 11 3 503 614 641050339 641050446 1.960000e-23 121.0
21 TraesCS5D01G498600 chr7D 94.901 353 2 3 1 338 517560977 517561328 4.570000e-149 538.0
22 TraesCS5D01G498600 chr7D 93.168 161 11 0 1087 1247 477072303 477072463 1.870000e-58 237.0
23 TraesCS5D01G498600 chr7D 91.743 109 5 1 506 614 168427497 168427393 9.000000e-32 148.0
24 TraesCS5D01G498600 chr7D 89.888 89 5 4 3935 4019 475636679 475636767 1.180000e-20 111.0
25 TraesCS5D01G498600 chr7D 83.471 121 14 4 500 618 188820856 188820740 1.530000e-19 108.0
26 TraesCS5D01G498600 chrUn 94.611 334 2 3 1 320 19790651 19790320 1.670000e-138 503.0
27 TraesCS5D01G498600 chrUn 97.183 71 0 2 3950 4019 69252026 69251957 7.060000e-23 119.0
28 TraesCS5D01G498600 chr1A 91.761 352 12 4 1 338 439929014 439929362 1.310000e-129 473.0
29 TraesCS5D01G498600 chr2A 91.501 353 13 3 1 338 577445422 577445772 1.690000e-128 470.0
30 TraesCS5D01G498600 chr2A 91.218 353 14 7 1 338 577442386 577442736 7.870000e-127 464.0
31 TraesCS5D01G498600 chr2A 91.159 328 13 6 1 314 578038259 578038584 7.980000e-117 431.0
32 TraesCS5D01G498600 chr2A 95.946 74 1 2 3948 4019 351669447 351669374 7.060000e-23 119.0
33 TraesCS5D01G498600 chr7A 91.218 353 16 2 1 338 54670615 54670263 2.190000e-127 466.0
34 TraesCS5D01G498600 chr7A 91.193 352 13 6 1 338 266579882 266580229 2.830000e-126 462.0
35 TraesCS5D01G498600 chr6B 91.218 353 15 3 1 338 578003733 578004084 2.190000e-127 466.0
36 TraesCS5D01G498600 chr3A 91.218 353 15 3 1 338 684758816 684758465 2.190000e-127 466.0
37 TraesCS5D01G498600 chr3A 99.401 167 1 0 1080 1246 612987282 612987116 1.810000e-78 303.0
38 TraesCS5D01G498600 chr3A 90.435 115 5 3 502 614 287684672 287684782 3.240000e-31 147.0
39 TraesCS5D01G498600 chr3B 96.335 191 2 5 1080 1269 625202701 625202515 3.900000e-80 309.0
40 TraesCS5D01G498600 chr3B 91.781 73 3 3 503 574 239918166 239918096 9.190000e-17 99.0
41 TraesCS5D01G498600 chr3D 98.802 167 2 0 1080 1246 470731430 470731264 8.440000e-77 298.0
42 TraesCS5D01G498600 chr3D 80.952 252 19 14 991 1242 542666095 542665873 5.340000e-39 172.0
43 TraesCS5D01G498600 chr3D 91.667 108 5 1 507 614 582796856 582796959 3.240000e-31 147.0
44 TraesCS5D01G498600 chr3D 97.222 72 1 1 3949 4019 571046132 571046203 1.960000e-23 121.0
45 TraesCS5D01G498600 chr6A 92.381 105 4 3 510 614 517665550 517665450 3.240000e-31 147.0
46 TraesCS5D01G498600 chr6A 85.496 131 14 3 485 614 237452832 237452958 9.060000e-27 132.0
47 TraesCS5D01G498600 chr2B 92.381 105 4 3 510 614 796952254 796952354 3.240000e-31 147.0
48 TraesCS5D01G498600 chr2B 89.394 66 5 1 501 564 593680730 593680795 9.260000e-12 82.4
49 TraesCS5D01G498600 chr6D 100.000 66 0 0 3954 4019 15121106 15121171 5.450000e-24 122.0
50 TraesCS5D01G498600 chr6D 98.571 70 0 1 3951 4019 332060128 332060059 5.450000e-24 122.0
51 TraesCS5D01G498600 chr4D 98.571 70 0 1 3951 4019 276779807 276779738 5.450000e-24 122.0
52 TraesCS5D01G498600 chr2D 94.737 76 2 2 3945 4019 385857419 385857493 2.540000e-22 117.0
53 TraesCS5D01G498600 chr1D 94.000 50 3 0 1928 1977 420648996 420648947 4.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G498600 chr5D 528400902 528404920 4018 False 7422 7422 100.0000 1 4019 1 chr5D.!!$F2 4018
1 TraesCS5D01G498600 chr5B 665205899 665209248 3349 True 4741 4741 92.4160 625 3956 1 chr5B.!!$R4 3331
2 TraesCS5D01G498600 chr5A 656466458 656469878 3420 False 2237 2675 90.7050 666 3956 2 chr5A.!!$F3 3290
3 TraesCS5D01G498600 chr5A 656652392 656652903 511 False 468 468 84.2410 3354 3833 1 chr5A.!!$F2 479
4 TraesCS5D01G498600 chr2A 577442386 577445772 3386 False 467 470 91.3595 1 338 2 chr2A.!!$F2 337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 632 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.0 0.00 0.0 0.00 2.24 F
1543 1594 0.247736 AAGTAGAGTCTGCAAGGGCG 59.752 55.0 11.07 0.0 45.35 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1906 1.468985 ATACAGTGCTCAGACGCTCT 58.531 50.0 0.0 0.0 34.37 4.09 R
3213 4412 0.250252 TGTGCAAGCAGGATCGAACA 60.250 50.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.704833 GGCAACTGCAGAGCGGGA 62.705 66.667 23.35 0.00 44.36 5.14
84 85 2.669569 GCAACTGCAGAGCGGGAA 60.670 61.111 23.35 0.00 39.57 3.97
85 86 2.260869 GCAACTGCAGAGCGGGAAA 61.261 57.895 23.35 0.00 39.57 3.13
86 87 1.795170 GCAACTGCAGAGCGGGAAAA 61.795 55.000 23.35 0.00 39.57 2.29
89 90 0.883833 ACTGCAGAGCGGGAAAATTG 59.116 50.000 23.35 0.00 39.57 2.32
124 139 6.763610 GTCTTCGAAGTAAAATGGGAGATGAT 59.236 38.462 23.85 0.00 0.00 2.45
298 313 9.679661 TCAGCAAAACCTTGTTCTATATGATTA 57.320 29.630 0.00 0.00 34.79 1.75
338 354 2.323968 TTTCTTTGCTTGGTTTGGCC 57.676 45.000 0.00 0.00 37.90 5.36
339 355 0.467804 TTCTTTGCTTGGTTTGGCCC 59.532 50.000 0.00 0.00 36.04 5.80
340 356 1.071299 CTTTGCTTGGTTTGGCCCC 59.929 57.895 0.00 0.00 36.04 5.80
355 371 3.866582 CCCGCCCCTGCTTAGGAG 61.867 72.222 0.00 0.00 34.43 3.69
370 386 3.745723 GGAGCCACTCCCTCAAAAA 57.254 52.632 1.98 0.00 44.36 1.94
371 387 1.248486 GGAGCCACTCCCTCAAAAAC 58.752 55.000 1.98 0.00 44.36 2.43
372 388 0.875059 GAGCCACTCCCTCAAAAACG 59.125 55.000 0.00 0.00 0.00 3.60
373 389 0.182775 AGCCACTCCCTCAAAAACGT 59.817 50.000 0.00 0.00 0.00 3.99
374 390 0.591659 GCCACTCCCTCAAAAACGTC 59.408 55.000 0.00 0.00 0.00 4.34
375 391 1.814248 GCCACTCCCTCAAAAACGTCT 60.814 52.381 0.00 0.00 0.00 4.18
376 392 2.572290 CCACTCCCTCAAAAACGTCTT 58.428 47.619 0.00 0.00 0.00 3.01
377 393 3.735591 CCACTCCCTCAAAAACGTCTTA 58.264 45.455 0.00 0.00 0.00 2.10
378 394 3.497262 CCACTCCCTCAAAAACGTCTTAC 59.503 47.826 0.00 0.00 0.00 2.34
379 395 4.124238 CACTCCCTCAAAAACGTCTTACA 58.876 43.478 0.00 0.00 0.00 2.41
380 396 4.755123 CACTCCCTCAAAAACGTCTTACAT 59.245 41.667 0.00 0.00 0.00 2.29
381 397 5.238650 CACTCCCTCAAAAACGTCTTACATT 59.761 40.000 0.00 0.00 0.00 2.71
382 398 6.425721 CACTCCCTCAAAAACGTCTTACATTA 59.574 38.462 0.00 0.00 0.00 1.90
383 399 6.426025 ACTCCCTCAAAAACGTCTTACATTAC 59.574 38.462 0.00 0.00 0.00 1.89
384 400 6.527423 TCCCTCAAAAACGTCTTACATTACT 58.473 36.000 0.00 0.00 0.00 2.24
385 401 6.425721 TCCCTCAAAAACGTCTTACATTACTG 59.574 38.462 0.00 0.00 0.00 2.74
386 402 6.204108 CCCTCAAAAACGTCTTACATTACTGT 59.796 38.462 0.00 0.00 39.49 3.55
387 403 7.385752 CCCTCAAAAACGTCTTACATTACTGTA 59.614 37.037 0.00 0.00 36.79 2.74
388 404 8.932791 CCTCAAAAACGTCTTACATTACTGTAT 58.067 33.333 0.00 0.00 37.68 2.29
393 409 9.798994 AAAACGTCTTACATTACTGTATAGAGG 57.201 33.333 1.49 15.33 37.68 3.69
394 410 8.517062 AACGTCTTACATTACTGTATAGAGGT 57.483 34.615 16.07 16.07 40.62 3.85
395 411 9.618890 AACGTCTTACATTACTGTATAGAGGTA 57.381 33.333 18.95 0.00 39.60 3.08
396 412 9.270640 ACGTCTTACATTACTGTATAGAGGTAG 57.729 37.037 18.11 5.09 39.27 3.18
397 413 9.270640 CGTCTTACATTACTGTATAGAGGTAGT 57.729 37.037 1.49 0.00 37.68 2.73
403 419 9.742144 ACATTACTGTATAGAGGTAGTAGATGG 57.258 37.037 1.49 0.00 32.49 3.51
404 420 9.742144 CATTACTGTATAGAGGTAGTAGATGGT 57.258 37.037 1.49 0.00 0.00 3.55
406 422 9.570468 TTACTGTATAGAGGTAGTAGATGGTTG 57.430 37.037 1.49 0.00 0.00 3.77
407 423 7.584532 ACTGTATAGAGGTAGTAGATGGTTGT 58.415 38.462 1.49 0.00 0.00 3.32
408 424 8.721479 ACTGTATAGAGGTAGTAGATGGTTGTA 58.279 37.037 1.49 0.00 0.00 2.41
409 425 9.742144 CTGTATAGAGGTAGTAGATGGTTGTAT 57.258 37.037 0.00 0.00 0.00 2.29
410 426 9.736414 TGTATAGAGGTAGTAGATGGTTGTATC 57.264 37.037 0.00 0.00 0.00 2.24
411 427 9.962809 GTATAGAGGTAGTAGATGGTTGTATCT 57.037 37.037 0.00 0.00 40.39 1.98
413 429 7.156694 AGAGGTAGTAGATGGTTGTATCTCT 57.843 40.000 0.00 0.00 38.35 3.10
414 430 7.588169 AGAGGTAGTAGATGGTTGTATCTCTT 58.412 38.462 0.00 0.00 38.35 2.85
415 431 7.722285 AGAGGTAGTAGATGGTTGTATCTCTTC 59.278 40.741 0.00 0.00 38.35 2.87
416 432 7.588169 AGGTAGTAGATGGTTGTATCTCTTCT 58.412 38.462 0.00 0.00 38.35 2.85
417 433 8.725256 AGGTAGTAGATGGTTGTATCTCTTCTA 58.275 37.037 0.00 0.00 38.35 2.10
418 434 9.523168 GGTAGTAGATGGTTGTATCTCTTCTAT 57.477 37.037 0.00 0.00 38.35 1.98
420 436 7.891561 AGTAGATGGTTGTATCTCTTCTATGC 58.108 38.462 0.00 0.00 38.35 3.14
421 437 5.777802 AGATGGTTGTATCTCTTCTATGCG 58.222 41.667 0.00 0.00 31.97 4.73
422 438 5.303078 AGATGGTTGTATCTCTTCTATGCGT 59.697 40.000 0.00 0.00 31.97 5.24
423 439 4.933330 TGGTTGTATCTCTTCTATGCGTC 58.067 43.478 0.00 0.00 0.00 5.19
424 440 4.645136 TGGTTGTATCTCTTCTATGCGTCT 59.355 41.667 0.00 0.00 0.00 4.18
425 441 5.216648 GGTTGTATCTCTTCTATGCGTCTC 58.783 45.833 0.00 0.00 0.00 3.36
426 442 5.216648 GTTGTATCTCTTCTATGCGTCTCC 58.783 45.833 0.00 0.00 0.00 3.71
427 443 4.461198 TGTATCTCTTCTATGCGTCTCCA 58.539 43.478 0.00 0.00 0.00 3.86
428 444 4.887655 TGTATCTCTTCTATGCGTCTCCAA 59.112 41.667 0.00 0.00 0.00 3.53
429 445 4.582701 ATCTCTTCTATGCGTCTCCAAG 57.417 45.455 0.00 0.00 0.00 3.61
430 446 3.621558 TCTCTTCTATGCGTCTCCAAGA 58.378 45.455 0.00 0.00 0.00 3.02
431 447 3.629855 TCTCTTCTATGCGTCTCCAAGAG 59.370 47.826 8.44 8.44 38.72 2.85
432 448 3.357203 TCTTCTATGCGTCTCCAAGAGT 58.643 45.455 0.00 0.00 0.00 3.24
433 449 3.378742 TCTTCTATGCGTCTCCAAGAGTC 59.621 47.826 0.00 0.00 0.00 3.36
434 450 2.723273 TCTATGCGTCTCCAAGAGTCA 58.277 47.619 0.00 0.00 0.00 3.41
435 451 3.089284 TCTATGCGTCTCCAAGAGTCAA 58.911 45.455 0.00 0.00 0.00 3.18
436 452 3.701542 TCTATGCGTCTCCAAGAGTCAAT 59.298 43.478 0.00 0.00 0.00 2.57
437 453 4.887655 TCTATGCGTCTCCAAGAGTCAATA 59.112 41.667 0.00 0.00 0.00 1.90
438 454 4.679373 ATGCGTCTCCAAGAGTCAATAT 57.321 40.909 0.00 0.00 0.00 1.28
439 455 5.791336 ATGCGTCTCCAAGAGTCAATATA 57.209 39.130 0.00 0.00 0.00 0.86
440 456 5.592104 TGCGTCTCCAAGAGTCAATATAA 57.408 39.130 0.00 0.00 0.00 0.98
441 457 5.972935 TGCGTCTCCAAGAGTCAATATAAA 58.027 37.500 0.00 0.00 0.00 1.40
442 458 5.810587 TGCGTCTCCAAGAGTCAATATAAAC 59.189 40.000 0.00 0.00 0.00 2.01
443 459 6.043411 GCGTCTCCAAGAGTCAATATAAACT 58.957 40.000 0.00 0.00 0.00 2.66
444 460 6.019479 GCGTCTCCAAGAGTCAATATAAACTG 60.019 42.308 0.00 0.00 0.00 3.16
445 461 6.019479 CGTCTCCAAGAGTCAATATAAACTGC 60.019 42.308 0.00 0.00 0.00 4.40
446 462 6.818644 GTCTCCAAGAGTCAATATAAACTGCA 59.181 38.462 0.00 0.00 0.00 4.41
447 463 6.818644 TCTCCAAGAGTCAATATAAACTGCAC 59.181 38.462 0.00 0.00 0.00 4.57
448 464 6.472016 TCCAAGAGTCAATATAAACTGCACA 58.528 36.000 0.00 0.00 0.00 4.57
449 465 7.112122 TCCAAGAGTCAATATAAACTGCACAT 58.888 34.615 0.00 0.00 0.00 3.21
450 466 8.264347 TCCAAGAGTCAATATAAACTGCACATA 58.736 33.333 0.00 0.00 0.00 2.29
451 467 8.892723 CCAAGAGTCAATATAAACTGCACATAA 58.107 33.333 0.00 0.00 0.00 1.90
454 470 9.113838 AGAGTCAATATAAACTGCACATAAAGG 57.886 33.333 0.00 0.00 0.00 3.11
455 471 9.109393 GAGTCAATATAAACTGCACATAAAGGA 57.891 33.333 0.00 0.00 0.00 3.36
456 472 9.113838 AGTCAATATAAACTGCACATAAAGGAG 57.886 33.333 0.00 0.00 0.00 3.69
457 473 7.857885 GTCAATATAAACTGCACATAAAGGAGC 59.142 37.037 0.00 0.00 0.00 4.70
458 474 7.555914 TCAATATAAACTGCACATAAAGGAGCA 59.444 33.333 0.00 0.00 35.43 4.26
459 475 8.355169 CAATATAAACTGCACATAAAGGAGCAT 58.645 33.333 0.00 0.00 36.28 3.79
460 476 9.573166 AATATAAACTGCACATAAAGGAGCATA 57.427 29.630 0.00 0.00 36.28 3.14
461 477 5.567138 AAACTGCACATAAAGGAGCATAC 57.433 39.130 0.00 0.00 36.28 2.39
462 478 4.494091 ACTGCACATAAAGGAGCATACT 57.506 40.909 0.00 0.00 36.28 2.12
463 479 4.194640 ACTGCACATAAAGGAGCATACTG 58.805 43.478 0.00 0.00 36.28 2.74
464 480 4.080919 ACTGCACATAAAGGAGCATACTGA 60.081 41.667 0.00 0.00 36.28 3.41
465 481 4.842574 TGCACATAAAGGAGCATACTGAA 58.157 39.130 0.00 0.00 31.05 3.02
466 482 5.252547 TGCACATAAAGGAGCATACTGAAA 58.747 37.500 0.00 0.00 31.05 2.69
467 483 5.709631 TGCACATAAAGGAGCATACTGAAAA 59.290 36.000 0.00 0.00 31.05 2.29
468 484 6.377996 TGCACATAAAGGAGCATACTGAAAAT 59.622 34.615 0.00 0.00 31.05 1.82
469 485 6.694411 GCACATAAAGGAGCATACTGAAAATG 59.306 38.462 0.00 0.00 0.00 2.32
470 486 7.198390 CACATAAAGGAGCATACTGAAAATGG 58.802 38.462 0.00 0.00 0.00 3.16
471 487 6.322201 ACATAAAGGAGCATACTGAAAATGGG 59.678 38.462 0.00 0.00 0.00 4.00
472 488 4.591321 AAGGAGCATACTGAAAATGGGA 57.409 40.909 0.00 0.00 0.00 4.37
473 489 3.891049 AGGAGCATACTGAAAATGGGAC 58.109 45.455 0.00 0.00 0.00 4.46
474 490 2.952310 GGAGCATACTGAAAATGGGACC 59.048 50.000 0.00 0.00 0.00 4.46
475 491 2.952310 GAGCATACTGAAAATGGGACCC 59.048 50.000 2.45 2.45 0.00 4.46
476 492 1.676006 GCATACTGAAAATGGGACCCG 59.324 52.381 5.91 0.00 0.00 5.28
477 493 2.682563 GCATACTGAAAATGGGACCCGA 60.683 50.000 5.91 0.00 0.00 5.14
478 494 3.616219 CATACTGAAAATGGGACCCGAA 58.384 45.455 5.91 0.00 0.00 4.30
479 495 2.899303 ACTGAAAATGGGACCCGAAT 57.101 45.000 5.91 0.00 0.00 3.34
480 496 5.373222 CATACTGAAAATGGGACCCGAATA 58.627 41.667 5.91 0.00 0.00 1.75
481 497 4.519906 ACTGAAAATGGGACCCGAATAT 57.480 40.909 5.91 0.00 0.00 1.28
482 498 4.867086 ACTGAAAATGGGACCCGAATATT 58.133 39.130 5.91 0.00 0.00 1.28
483 499 5.269189 ACTGAAAATGGGACCCGAATATTT 58.731 37.500 5.91 3.33 0.00 1.40
484 500 5.127031 ACTGAAAATGGGACCCGAATATTTG 59.873 40.000 5.91 0.00 0.00 2.32
485 501 5.020132 TGAAAATGGGACCCGAATATTTGT 58.980 37.500 5.91 0.00 0.00 2.83
486 502 5.105554 TGAAAATGGGACCCGAATATTTGTG 60.106 40.000 5.91 0.00 0.00 3.33
487 503 3.662759 ATGGGACCCGAATATTTGTGT 57.337 42.857 5.91 0.00 0.00 3.72
488 504 3.443145 TGGGACCCGAATATTTGTGTT 57.557 42.857 5.91 0.00 0.00 3.32
489 505 3.768878 TGGGACCCGAATATTTGTGTTT 58.231 40.909 5.91 0.00 0.00 2.83
490 506 4.153411 TGGGACCCGAATATTTGTGTTTT 58.847 39.130 5.91 0.00 0.00 2.43
491 507 5.322754 TGGGACCCGAATATTTGTGTTTTA 58.677 37.500 5.91 0.00 0.00 1.52
492 508 5.952947 TGGGACCCGAATATTTGTGTTTTAT 59.047 36.000 5.91 0.00 0.00 1.40
493 509 7.117397 TGGGACCCGAATATTTGTGTTTTATA 58.883 34.615 5.91 0.00 0.00 0.98
494 510 7.780745 TGGGACCCGAATATTTGTGTTTTATAT 59.219 33.333 5.91 0.00 0.00 0.86
495 511 9.287373 GGGACCCGAATATTTGTGTTTTATATA 57.713 33.333 0.00 0.00 0.00 0.86
530 546 5.767277 AAAAATACTCCCTCCGTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
531 547 5.767277 AAAATACTCCCTCCGTCCTAAAA 57.233 39.130 0.00 0.00 0.00 1.52
532 548 5.970501 AAATACTCCCTCCGTCCTAAAAT 57.029 39.130 0.00 0.00 0.00 1.82
533 549 7.441903 AAAATACTCCCTCCGTCCTAAAATA 57.558 36.000 0.00 0.00 0.00 1.40
534 550 7.441903 AAATACTCCCTCCGTCCTAAAATAA 57.558 36.000 0.00 0.00 0.00 1.40
535 551 6.667558 ATACTCCCTCCGTCCTAAAATAAG 57.332 41.667 0.00 0.00 0.00 1.73
536 552 4.359996 ACTCCCTCCGTCCTAAAATAAGT 58.640 43.478 0.00 0.00 0.00 2.24
537 553 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
538 554 4.355549 TCCCTCCGTCCTAAAATAAGTGA 58.644 43.478 0.00 0.00 0.00 3.41
539 555 4.161001 TCCCTCCGTCCTAAAATAAGTGAC 59.839 45.833 0.00 0.00 0.00 3.67
540 556 4.161754 CCCTCCGTCCTAAAATAAGTGACT 59.838 45.833 0.00 0.00 0.00 3.41
541 557 5.349809 CCTCCGTCCTAAAATAAGTGACTC 58.650 45.833 0.00 0.00 0.00 3.36
542 558 5.105473 CCTCCGTCCTAAAATAAGTGACTCA 60.105 44.000 0.00 0.00 0.00 3.41
543 559 6.349243 TCCGTCCTAAAATAAGTGACTCAA 57.651 37.500 0.00 0.00 0.00 3.02
544 560 6.161381 TCCGTCCTAAAATAAGTGACTCAAC 58.839 40.000 0.00 0.00 0.00 3.18
545 561 6.014840 TCCGTCCTAAAATAAGTGACTCAACT 60.015 38.462 0.00 0.00 0.00 3.16
546 562 6.649557 CCGTCCTAAAATAAGTGACTCAACTT 59.350 38.462 0.00 0.00 42.89 2.66
547 563 7.172703 CCGTCCTAAAATAAGTGACTCAACTTT 59.827 37.037 0.00 0.00 40.77 2.66
548 564 9.199982 CGTCCTAAAATAAGTGACTCAACTTTA 57.800 33.333 0.00 0.00 40.77 1.85
585 601 9.023967 AGTACGTACAAAGTTAGTACAAACTTG 57.976 33.333 26.55 0.00 46.40 3.16
586 602 9.019764 GTACGTACAAAGTTAGTACAAACTTGA 57.980 33.333 20.67 0.00 46.40 3.02
587 603 8.123445 ACGTACAAAGTTAGTACAAACTTGAG 57.877 34.615 2.97 2.71 46.40 3.02
588 604 7.761249 ACGTACAAAGTTAGTACAAACTTGAGT 59.239 33.333 2.97 7.58 46.40 3.41
589 605 8.264632 CGTACAAAGTTAGTACAAACTTGAGTC 58.735 37.037 2.97 0.00 46.40 3.36
590 606 9.090692 GTACAAAGTTAGTACAAACTTGAGTCA 57.909 33.333 2.97 0.00 46.40 3.41
591 607 7.971455 ACAAAGTTAGTACAAACTTGAGTCAC 58.029 34.615 2.97 0.00 46.40 3.67
592 608 7.822822 ACAAAGTTAGTACAAACTTGAGTCACT 59.177 33.333 2.97 0.00 46.40 3.41
593 609 8.665685 CAAAGTTAGTACAAACTTGAGTCACTT 58.334 33.333 2.97 0.00 46.40 3.16
594 610 9.880157 AAAGTTAGTACAAACTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
596 612 9.694137 AGTTAGTACAAACTTGAGTCACTTATC 57.306 33.333 0.00 0.00 36.26 1.75
597 613 9.694137 GTTAGTACAAACTTGAGTCACTTATCT 57.306 33.333 0.00 0.00 37.15 1.98
599 615 8.594881 AGTACAAACTTGAGTCACTTATCTTG 57.405 34.615 0.00 0.00 29.00 3.02
600 616 6.867662 ACAAACTTGAGTCACTTATCTTGG 57.132 37.500 0.00 0.00 0.00 3.61
601 617 5.765182 ACAAACTTGAGTCACTTATCTTGGG 59.235 40.000 0.00 0.00 0.00 4.12
602 618 5.825593 AACTTGAGTCACTTATCTTGGGA 57.174 39.130 0.00 0.00 0.00 4.37
603 619 5.153950 ACTTGAGTCACTTATCTTGGGAC 57.846 43.478 0.00 0.00 0.00 4.46
604 620 3.868757 TGAGTCACTTATCTTGGGACG 57.131 47.619 0.00 0.00 33.84 4.79
605 621 2.496070 TGAGTCACTTATCTTGGGACGG 59.504 50.000 0.00 0.00 33.84 4.79
606 622 2.758979 GAGTCACTTATCTTGGGACGGA 59.241 50.000 0.00 0.00 33.84 4.69
607 623 2.761208 AGTCACTTATCTTGGGACGGAG 59.239 50.000 0.00 0.00 33.84 4.63
608 624 2.108168 TCACTTATCTTGGGACGGAGG 58.892 52.381 0.00 0.00 0.00 4.30
609 625 1.139058 CACTTATCTTGGGACGGAGGG 59.861 57.143 0.00 0.00 0.00 4.30
610 626 1.007963 ACTTATCTTGGGACGGAGGGA 59.992 52.381 0.00 0.00 0.00 4.20
611 627 1.689273 CTTATCTTGGGACGGAGGGAG 59.311 57.143 0.00 0.00 0.00 4.30
612 628 0.635009 TATCTTGGGACGGAGGGAGT 59.365 55.000 0.00 0.00 0.00 3.85
613 629 0.635009 ATCTTGGGACGGAGGGAGTA 59.365 55.000 0.00 0.00 0.00 2.59
614 630 0.324091 TCTTGGGACGGAGGGAGTAC 60.324 60.000 0.00 0.00 0.00 2.73
615 631 0.324460 CTTGGGACGGAGGGAGTACT 60.324 60.000 0.00 0.00 0.00 2.73
616 632 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
617 633 0.613853 TGGGACGGAGGGAGTACTTG 60.614 60.000 0.00 0.00 0.00 3.16
618 634 0.614134 GGGACGGAGGGAGTACTTGT 60.614 60.000 0.00 0.00 0.00 3.16
619 635 1.264295 GGACGGAGGGAGTACTTGTT 58.736 55.000 0.00 0.00 0.00 2.83
620 636 2.450476 GGACGGAGGGAGTACTTGTTA 58.550 52.381 0.00 0.00 0.00 2.41
621 637 3.029570 GGACGGAGGGAGTACTTGTTAT 58.970 50.000 0.00 0.00 0.00 1.89
622 638 4.210331 GGACGGAGGGAGTACTTGTTATA 58.790 47.826 0.00 0.00 0.00 0.98
623 639 4.646492 GGACGGAGGGAGTACTTGTTATAA 59.354 45.833 0.00 0.00 0.00 0.98
647 663 0.257039 CCTCTCCCTGACCCCAAATG 59.743 60.000 0.00 0.00 0.00 2.32
649 665 1.849039 CTCTCCCTGACCCCAAATGAT 59.151 52.381 0.00 0.00 0.00 2.45
654 670 4.349365 TCCCTGACCCCAAATGATAAAAC 58.651 43.478 0.00 0.00 0.00 2.43
658 674 5.336690 CCTGACCCCAAATGATAAAACAGTG 60.337 44.000 0.00 0.00 0.00 3.66
687 706 9.586435 CCCATCTAAAAATAAAAGGTTGATGAC 57.414 33.333 0.00 0.00 32.95 3.06
730 750 9.970395 TCATCAATAATTAATCAGCAACCATTC 57.030 29.630 0.00 0.00 0.00 2.67
1014 1059 0.255318 ACCTACCGACTGATCTCCGT 59.745 55.000 0.00 0.00 0.00 4.69
1030 1075 2.473760 CGTCTCGGCTGGATCTCGT 61.474 63.158 0.00 0.00 0.00 4.18
1340 1390 1.496403 ATGCATGCGCTCTCGATGTG 61.496 55.000 14.09 0.00 39.64 3.21
1342 1392 2.587194 ATGCGCTCTCGATGTGCC 60.587 61.111 9.73 6.23 39.88 5.01
1543 1594 0.247736 AAGTAGAGTCTGCAAGGGCG 59.752 55.000 11.07 0.00 45.35 6.13
1549 1600 3.241530 TCTGCAAGGGCGGTGTCT 61.242 61.111 0.00 0.00 46.81 3.41
1592 1661 6.404293 GCTTTTATAGCGTCCATTTTTCCTCA 60.404 38.462 0.00 0.00 40.71 3.86
1757 1876 0.318614 ACATTTGGTTTTCGCTGGCG 60.319 50.000 8.80 8.80 41.35 5.69
1760 1879 1.167155 TTTGGTTTTCGCTGGCGCTA 61.167 50.000 7.64 0.00 39.59 4.26
1841 1961 1.518929 GATCGGAGCTTTCGATGTTCG 59.481 52.381 24.02 0.00 45.81 3.95
1873 1993 3.596214 CACGGCCTGTTTATGTAGAAGT 58.404 45.455 0.00 0.00 0.00 3.01
1898 2019 7.552687 GTGGTTCTTGATCAATCTATTACACCA 59.447 37.037 8.96 9.24 0.00 4.17
1925 2046 9.675464 ATGTTCCTAAATATAAGACGTTTTGGA 57.325 29.630 0.83 0.00 35.81 3.53
2066 2389 4.523943 AGCATAGTCAGACCTCATGATCTC 59.476 45.833 0.00 0.00 0.00 2.75
2276 3311 4.530553 TGATTACAGGTAGAAGGCAAGACA 59.469 41.667 0.00 0.00 0.00 3.41
2516 3551 2.900546 GTCAGTTCAGGAGGAAGAAGGA 59.099 50.000 0.00 0.00 35.82 3.36
2926 3962 2.273370 AGATACCGTGTGTAGTTGCG 57.727 50.000 0.00 0.00 31.61 4.85
3012 4189 9.927668 ATGTTTCCTTTCAGGTATATGTTTTTG 57.072 29.630 0.00 0.00 36.53 2.44
3037 4216 6.093633 GTCCTAAAACATTATATGCCCCGATC 59.906 42.308 0.00 0.00 0.00 3.69
3053 4232 1.364626 GATCACCGGAGCAGCAACAG 61.365 60.000 9.46 0.00 0.00 3.16
3109 4296 4.142534 GGATTGTGGTGTCATCTGAACATG 60.143 45.833 0.00 0.00 0.00 3.21
3120 4308 4.929211 TCATCTGAACATGTTTGTCCTACG 59.071 41.667 13.36 0.00 34.06 3.51
3123 4311 4.988540 TCTGAACATGTTTGTCCTACGAAG 59.011 41.667 13.36 0.00 34.06 3.79
3153 4350 5.038033 TCGTAAACATTGTTCTTGCAAACC 58.962 37.500 0.00 0.00 31.63 3.27
3155 4352 3.518634 AACATTGTTCTTGCAAACCGT 57.481 38.095 0.00 0.00 31.63 4.83
3193 4392 5.939883 TGTTCCTCTTTGTATGGTTCATCTG 59.060 40.000 0.00 0.00 0.00 2.90
3194 4393 5.762179 TCCTCTTTGTATGGTTCATCTGT 57.238 39.130 0.00 0.00 0.00 3.41
3195 4394 6.126863 TCCTCTTTGTATGGTTCATCTGTT 57.873 37.500 0.00 0.00 0.00 3.16
3196 4395 6.173339 TCCTCTTTGTATGGTTCATCTGTTC 58.827 40.000 0.00 0.00 0.00 3.18
3197 4396 5.355350 CCTCTTTGTATGGTTCATCTGTTCC 59.645 44.000 0.00 0.00 0.00 3.62
3198 4397 6.126863 TCTTTGTATGGTTCATCTGTTCCT 57.873 37.500 0.00 0.00 0.00 3.36
3199 4398 6.173339 TCTTTGTATGGTTCATCTGTTCCTC 58.827 40.000 0.00 0.00 0.00 3.71
3200 4399 5.762179 TTGTATGGTTCATCTGTTCCTCT 57.238 39.130 0.00 0.00 0.00 3.69
3201 4400 5.762179 TGTATGGTTCATCTGTTCCTCTT 57.238 39.130 0.00 0.00 0.00 2.85
3202 4401 6.126863 TGTATGGTTCATCTGTTCCTCTTT 57.873 37.500 0.00 0.00 0.00 2.52
3203 4402 5.939883 TGTATGGTTCATCTGTTCCTCTTTG 59.060 40.000 0.00 0.00 0.00 2.77
3204 4403 4.437682 TGGTTCATCTGTTCCTCTTTGT 57.562 40.909 0.00 0.00 0.00 2.83
3205 4404 5.560722 TGGTTCATCTGTTCCTCTTTGTA 57.439 39.130 0.00 0.00 0.00 2.41
3206 4405 6.126863 TGGTTCATCTGTTCCTCTTTGTAT 57.873 37.500 0.00 0.00 0.00 2.29
3207 4406 5.939883 TGGTTCATCTGTTCCTCTTTGTATG 59.060 40.000 0.00 0.00 0.00 2.39
3208 4407 5.355350 GGTTCATCTGTTCCTCTTTGTATGG 59.645 44.000 0.00 0.00 0.00 2.74
3209 4408 5.102953 TCATCTGTTCCTCTTTGTATGGG 57.897 43.478 0.00 0.00 0.00 4.00
3210 4409 4.536090 TCATCTGTTCCTCTTTGTATGGGT 59.464 41.667 0.00 0.00 0.00 4.51
3211 4410 4.993705 TCTGTTCCTCTTTGTATGGGTT 57.006 40.909 0.00 0.00 0.00 4.11
3212 4411 5.319043 TCTGTTCCTCTTTGTATGGGTTT 57.681 39.130 0.00 0.00 0.00 3.27
3213 4412 5.701224 TCTGTTCCTCTTTGTATGGGTTTT 58.299 37.500 0.00 0.00 0.00 2.43
3214 4413 5.534654 TCTGTTCCTCTTTGTATGGGTTTTG 59.465 40.000 0.00 0.00 0.00 2.44
3215 4414 5.205056 TGTTCCTCTTTGTATGGGTTTTGT 58.795 37.500 0.00 0.00 0.00 2.83
3216 4415 5.659079 TGTTCCTCTTTGTATGGGTTTTGTT 59.341 36.000 0.00 0.00 0.00 2.83
3217 4416 6.183360 TGTTCCTCTTTGTATGGGTTTTGTTC 60.183 38.462 0.00 0.00 0.00 3.18
3293 4502 3.455327 TGGTCGTTTTCGTGTAATGTGA 58.545 40.909 0.00 0.00 44.46 3.58
3295 4504 3.120786 GGTCGTTTTCGTGTAATGTGAGG 60.121 47.826 0.00 0.00 44.46 3.86
3330 4568 5.603750 AGATATAGATGCCCCAGATTACCA 58.396 41.667 0.00 0.00 0.00 3.25
3371 4609 6.406692 TGCTCCTATATCTTGTAGTGTTCC 57.593 41.667 0.00 0.00 0.00 3.62
3410 4648 3.126858 GCTATCCGAACATCTTGCAAACA 59.873 43.478 0.00 0.00 0.00 2.83
3616 4882 2.360483 TGTTTCCACGTTGCATTGTCAT 59.640 40.909 0.00 0.00 0.00 3.06
3624 4895 5.079406 CACGTTGCATTGTCATTACAGTAC 58.921 41.667 0.00 0.00 36.83 2.73
3689 4961 8.078596 CCTTAAATCTCCTTTGAACTTTCAGTG 58.921 37.037 0.00 0.00 38.61 3.66
3753 5026 0.718904 CATTCCGCGACGTTTCATCA 59.281 50.000 8.23 0.00 0.00 3.07
3805 5080 2.027745 TCAGATGCCCAGTCTTTCAGAC 60.028 50.000 0.00 0.00 45.38 3.51
3984 5615 3.676093 CAGAAAGACTGTAAGGGAACCC 58.324 50.000 0.94 0.94 45.84 4.11
3985 5616 3.328050 CAGAAAGACTGTAAGGGAACCCT 59.672 47.826 6.57 6.57 45.84 4.34
3986 5617 4.202472 CAGAAAGACTGTAAGGGAACCCTT 60.202 45.833 25.52 25.52 45.84 3.95
3987 5618 5.012768 CAGAAAGACTGTAAGGGAACCCTTA 59.987 44.000 23.61 23.61 45.83 2.69
4001 5632 6.937436 GGAACCCTTACAGTATAATTGGTG 57.063 41.667 0.00 0.00 0.00 4.17
4002 5633 5.298527 GGAACCCTTACAGTATAATTGGTGC 59.701 44.000 0.00 0.00 0.00 5.01
4003 5634 5.444744 ACCCTTACAGTATAATTGGTGCA 57.555 39.130 0.00 0.00 0.00 4.57
4004 5635 5.822204 ACCCTTACAGTATAATTGGTGCAA 58.178 37.500 0.00 0.00 0.00 4.08
4005 5636 5.650703 ACCCTTACAGTATAATTGGTGCAAC 59.349 40.000 0.00 0.00 0.00 4.17
4006 5637 5.650266 CCCTTACAGTATAATTGGTGCAACA 59.350 40.000 0.00 0.00 39.98 3.33
4007 5638 6.151985 CCCTTACAGTATAATTGGTGCAACAA 59.848 38.462 21.46 21.46 39.98 2.83
4008 5639 7.309499 CCCTTACAGTATAATTGGTGCAACAAA 60.309 37.037 23.14 6.25 39.98 2.83
4009 5640 7.540745 CCTTACAGTATAATTGGTGCAACAAAC 59.459 37.037 23.14 15.04 39.98 2.93
4010 5641 5.778862 ACAGTATAATTGGTGCAACAAACC 58.221 37.500 23.14 7.62 39.98 3.27
4011 5642 5.167845 CAGTATAATTGGTGCAACAAACCC 58.832 41.667 23.14 7.99 39.98 4.11
4012 5643 4.835615 AGTATAATTGGTGCAACAAACCCA 59.164 37.500 23.14 3.95 39.98 4.51
4013 5644 4.696479 ATAATTGGTGCAACAAACCCAA 57.304 36.364 23.14 14.03 39.98 4.12
4014 5645 3.356529 AATTGGTGCAACAAACCCAAA 57.643 38.095 23.14 0.00 40.16 3.28
4015 5646 3.574354 ATTGGTGCAACAAACCCAAAT 57.426 38.095 23.14 0.00 40.16 2.32
4016 5647 3.356529 TTGGTGCAACAAACCCAAATT 57.643 38.095 16.46 0.00 39.98 1.82
4017 5648 2.636830 TGGTGCAACAAACCCAAATTG 58.363 42.857 0.00 0.00 39.98 2.32
4018 5649 1.333308 GGTGCAACAAACCCAAATTGC 59.667 47.619 0.00 0.94 46.08 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.318120 GCAACCTGTCAACCATTGGG 59.682 55.000 7.78 0.00 41.29 4.12
163 178 9.033711 TCATCAGAAGATATCTTAGCTGCTAAT 57.966 33.333 21.32 11.09 35.73 1.73
164 179 8.414629 TCATCAGAAGATATCTTAGCTGCTAA 57.585 34.615 21.32 20.04 35.73 3.09
215 230 0.107654 AAGTGGCCTCTACGATTGCC 60.108 55.000 7.96 0.00 44.27 4.52
219 234 9.490379 CTATTAATTTAAAGTGGCCTCTACGAT 57.510 33.333 7.96 0.00 0.00 3.73
267 282 3.763897 AGAACAAGGTTTTGCTGAAGTGT 59.236 39.130 0.00 0.00 37.85 3.55
307 322 5.807011 CCAAGCAAAGAAAAAGAATATCCGG 59.193 40.000 0.00 0.00 0.00 5.14
308 323 6.389906 ACCAAGCAAAGAAAAAGAATATCCG 58.610 36.000 0.00 0.00 0.00 4.18
316 332 3.065233 GGCCAAACCAAGCAAAGAAAAAG 59.935 43.478 0.00 0.00 38.86 2.27
353 369 0.875059 CGTTTTTGAGGGAGTGGCTC 59.125 55.000 0.00 0.00 0.00 4.70
354 370 0.182775 ACGTTTTTGAGGGAGTGGCT 59.817 50.000 0.00 0.00 0.00 4.75
355 371 0.591659 GACGTTTTTGAGGGAGTGGC 59.408 55.000 0.00 0.00 0.00 5.01
356 372 2.256117 AGACGTTTTTGAGGGAGTGG 57.744 50.000 0.00 0.00 0.00 4.00
357 373 4.124238 TGTAAGACGTTTTTGAGGGAGTG 58.876 43.478 0.00 0.00 0.00 3.51
358 374 4.411256 TGTAAGACGTTTTTGAGGGAGT 57.589 40.909 0.00 0.00 0.00 3.85
359 375 5.941948 AATGTAAGACGTTTTTGAGGGAG 57.058 39.130 0.00 0.00 0.00 4.30
360 376 6.425721 CAGTAATGTAAGACGTTTTTGAGGGA 59.574 38.462 0.00 0.00 0.00 4.20
361 377 6.204108 ACAGTAATGTAAGACGTTTTTGAGGG 59.796 38.462 0.00 0.00 0.00 4.30
362 378 7.186021 ACAGTAATGTAAGACGTTTTTGAGG 57.814 36.000 0.00 0.00 0.00 3.86
367 383 9.798994 CCTCTATACAGTAATGTAAGACGTTTT 57.201 33.333 7.17 0.00 0.00 2.43
368 384 8.964772 ACCTCTATACAGTAATGTAAGACGTTT 58.035 33.333 7.17 0.00 0.00 3.60
369 385 8.517062 ACCTCTATACAGTAATGTAAGACGTT 57.483 34.615 7.17 0.00 0.00 3.99
370 386 9.270640 CTACCTCTATACAGTAATGTAAGACGT 57.729 37.037 7.17 12.24 0.00 4.34
371 387 9.270640 ACTACCTCTATACAGTAATGTAAGACG 57.729 37.037 7.17 8.03 0.00 4.18
377 393 9.742144 CCATCTACTACCTCTATACAGTAATGT 57.258 37.037 0.00 0.00 0.00 2.71
378 394 9.742144 ACCATCTACTACCTCTATACAGTAATG 57.258 37.037 0.00 0.00 0.00 1.90
380 396 9.570468 CAACCATCTACTACCTCTATACAGTAA 57.430 37.037 0.00 0.00 0.00 2.24
381 397 8.721479 ACAACCATCTACTACCTCTATACAGTA 58.279 37.037 0.00 0.00 0.00 2.74
382 398 7.584532 ACAACCATCTACTACCTCTATACAGT 58.415 38.462 0.00 0.00 0.00 3.55
383 399 9.742144 ATACAACCATCTACTACCTCTATACAG 57.258 37.037 0.00 0.00 0.00 2.74
384 400 9.736414 GATACAACCATCTACTACCTCTATACA 57.264 37.037 0.00 0.00 0.00 2.29
385 401 9.962809 AGATACAACCATCTACTACCTCTATAC 57.037 37.037 0.00 0.00 33.41 1.47
387 403 8.896658 AGAGATACAACCATCTACTACCTCTAT 58.103 37.037 0.00 0.00 35.37 1.98
388 404 8.277720 AGAGATACAACCATCTACTACCTCTA 57.722 38.462 0.00 0.00 35.37 2.43
389 405 7.156694 AGAGATACAACCATCTACTACCTCT 57.843 40.000 0.00 0.00 35.37 3.69
390 406 7.722285 AGAAGAGATACAACCATCTACTACCTC 59.278 40.741 0.00 0.00 35.37 3.85
391 407 7.588169 AGAAGAGATACAACCATCTACTACCT 58.412 38.462 0.00 0.00 35.37 3.08
392 408 7.826918 AGAAGAGATACAACCATCTACTACC 57.173 40.000 0.00 0.00 35.37 3.18
394 410 9.015367 GCATAGAAGAGATACAACCATCTACTA 57.985 37.037 0.00 0.00 35.37 1.82
395 411 7.308891 CGCATAGAAGAGATACAACCATCTACT 60.309 40.741 0.00 0.00 35.37 2.57
396 412 6.804295 CGCATAGAAGAGATACAACCATCTAC 59.196 42.308 0.00 0.00 35.37 2.59
397 413 6.490381 ACGCATAGAAGAGATACAACCATCTA 59.510 38.462 0.00 0.00 35.37 1.98
398 414 5.303078 ACGCATAGAAGAGATACAACCATCT 59.697 40.000 0.00 0.00 37.99 2.90
399 415 5.533482 ACGCATAGAAGAGATACAACCATC 58.467 41.667 0.00 0.00 0.00 3.51
400 416 5.303078 AGACGCATAGAAGAGATACAACCAT 59.697 40.000 0.00 0.00 0.00 3.55
401 417 4.645136 AGACGCATAGAAGAGATACAACCA 59.355 41.667 0.00 0.00 0.00 3.67
402 418 5.189659 AGACGCATAGAAGAGATACAACC 57.810 43.478 0.00 0.00 0.00 3.77
403 419 5.216648 GGAGACGCATAGAAGAGATACAAC 58.783 45.833 0.00 0.00 0.00 3.32
404 420 4.887655 TGGAGACGCATAGAAGAGATACAA 59.112 41.667 0.00 0.00 0.00 2.41
405 421 4.461198 TGGAGACGCATAGAAGAGATACA 58.539 43.478 0.00 0.00 0.00 2.29
406 422 5.239744 TCTTGGAGACGCATAGAAGAGATAC 59.760 44.000 0.00 0.00 0.00 2.24
407 423 5.377478 TCTTGGAGACGCATAGAAGAGATA 58.623 41.667 0.00 0.00 0.00 1.98
408 424 4.211125 TCTTGGAGACGCATAGAAGAGAT 58.789 43.478 0.00 0.00 0.00 2.75
409 425 3.621558 TCTTGGAGACGCATAGAAGAGA 58.378 45.455 0.00 0.00 0.00 3.10
410 426 3.380004 ACTCTTGGAGACGCATAGAAGAG 59.620 47.826 0.00 0.00 41.37 2.85
411 427 3.357203 ACTCTTGGAGACGCATAGAAGA 58.643 45.455 1.31 0.00 33.32 2.87
412 428 3.129462 TGACTCTTGGAGACGCATAGAAG 59.871 47.826 1.31 0.00 33.32 2.85
413 429 3.089284 TGACTCTTGGAGACGCATAGAA 58.911 45.455 1.31 0.00 33.32 2.10
414 430 2.723273 TGACTCTTGGAGACGCATAGA 58.277 47.619 1.31 0.00 33.32 1.98
415 431 3.510388 TTGACTCTTGGAGACGCATAG 57.490 47.619 1.31 0.00 33.32 2.23
416 432 5.791336 ATATTGACTCTTGGAGACGCATA 57.209 39.130 1.31 0.00 33.32 3.14
417 433 4.679373 ATATTGACTCTTGGAGACGCAT 57.321 40.909 1.31 0.00 33.32 4.73
418 434 5.592104 TTATATTGACTCTTGGAGACGCA 57.408 39.130 1.31 0.00 33.32 5.24
419 435 6.019479 CAGTTTATATTGACTCTTGGAGACGC 60.019 42.308 1.31 0.00 33.32 5.19
420 436 6.019479 GCAGTTTATATTGACTCTTGGAGACG 60.019 42.308 1.31 0.00 33.32 4.18
421 437 6.818644 TGCAGTTTATATTGACTCTTGGAGAC 59.181 38.462 1.31 0.00 33.32 3.36
422 438 6.818644 GTGCAGTTTATATTGACTCTTGGAGA 59.181 38.462 1.31 0.00 33.32 3.71
423 439 6.595326 TGTGCAGTTTATATTGACTCTTGGAG 59.405 38.462 0.00 0.00 35.52 3.86
424 440 6.472016 TGTGCAGTTTATATTGACTCTTGGA 58.528 36.000 0.00 0.00 0.00 3.53
425 441 6.741992 TGTGCAGTTTATATTGACTCTTGG 57.258 37.500 0.00 0.00 0.00 3.61
428 444 9.113838 CCTTTATGTGCAGTTTATATTGACTCT 57.886 33.333 0.00 0.00 0.00 3.24
429 445 9.109393 TCCTTTATGTGCAGTTTATATTGACTC 57.891 33.333 0.00 0.00 0.00 3.36
430 446 9.113838 CTCCTTTATGTGCAGTTTATATTGACT 57.886 33.333 0.00 0.00 0.00 3.41
431 447 7.857885 GCTCCTTTATGTGCAGTTTATATTGAC 59.142 37.037 0.00 0.00 0.00 3.18
432 448 7.555914 TGCTCCTTTATGTGCAGTTTATATTGA 59.444 33.333 0.00 0.00 0.00 2.57
433 449 7.706159 TGCTCCTTTATGTGCAGTTTATATTG 58.294 34.615 0.00 0.00 0.00 1.90
434 450 7.880160 TGCTCCTTTATGTGCAGTTTATATT 57.120 32.000 0.00 0.00 0.00 1.28
435 451 9.003658 GTATGCTCCTTTATGTGCAGTTTATAT 57.996 33.333 0.00 0.00 38.87 0.86
436 452 8.210946 AGTATGCTCCTTTATGTGCAGTTTATA 58.789 33.333 0.00 0.00 38.87 0.98
437 453 7.012704 CAGTATGCTCCTTTATGTGCAGTTTAT 59.987 37.037 0.00 0.00 38.87 1.40
438 454 6.316140 CAGTATGCTCCTTTATGTGCAGTTTA 59.684 38.462 0.00 0.00 38.87 2.01
439 455 5.124457 CAGTATGCTCCTTTATGTGCAGTTT 59.876 40.000 0.00 0.00 38.87 2.66
440 456 4.637534 CAGTATGCTCCTTTATGTGCAGTT 59.362 41.667 0.00 0.00 38.87 3.16
441 457 4.080919 TCAGTATGCTCCTTTATGTGCAGT 60.081 41.667 0.00 0.00 38.87 4.40
442 458 4.445453 TCAGTATGCTCCTTTATGTGCAG 58.555 43.478 0.00 0.00 38.87 4.41
443 459 4.486125 TCAGTATGCTCCTTTATGTGCA 57.514 40.909 0.00 0.00 39.83 4.57
444 460 5.818136 TTTCAGTATGCTCCTTTATGTGC 57.182 39.130 0.00 0.00 34.76 4.57
445 461 7.198390 CCATTTTCAGTATGCTCCTTTATGTG 58.802 38.462 0.00 0.00 34.76 3.21
446 462 6.322201 CCCATTTTCAGTATGCTCCTTTATGT 59.678 38.462 0.00 0.00 34.76 2.29
447 463 6.547141 TCCCATTTTCAGTATGCTCCTTTATG 59.453 38.462 0.00 0.00 34.76 1.90
448 464 6.547510 GTCCCATTTTCAGTATGCTCCTTTAT 59.452 38.462 0.00 0.00 34.76 1.40
449 465 5.885912 GTCCCATTTTCAGTATGCTCCTTTA 59.114 40.000 0.00 0.00 34.76 1.85
450 466 4.706962 GTCCCATTTTCAGTATGCTCCTTT 59.293 41.667 0.00 0.00 34.76 3.11
451 467 4.273318 GTCCCATTTTCAGTATGCTCCTT 58.727 43.478 0.00 0.00 34.76 3.36
452 468 3.372025 GGTCCCATTTTCAGTATGCTCCT 60.372 47.826 0.00 0.00 34.76 3.69
453 469 2.952310 GGTCCCATTTTCAGTATGCTCC 59.048 50.000 0.00 0.00 34.76 4.70
454 470 2.952310 GGGTCCCATTTTCAGTATGCTC 59.048 50.000 1.78 0.00 34.76 4.26
455 471 2.683742 CGGGTCCCATTTTCAGTATGCT 60.684 50.000 9.12 0.00 34.76 3.79
456 472 1.676006 CGGGTCCCATTTTCAGTATGC 59.324 52.381 9.12 0.00 34.76 3.14
457 473 3.275617 TCGGGTCCCATTTTCAGTATG 57.724 47.619 9.12 0.00 37.54 2.39
458 474 4.519906 ATTCGGGTCCCATTTTCAGTAT 57.480 40.909 9.12 0.00 0.00 2.12
459 475 5.640158 ATATTCGGGTCCCATTTTCAGTA 57.360 39.130 9.12 0.00 0.00 2.74
460 476 2.899303 ATTCGGGTCCCATTTTCAGT 57.101 45.000 9.12 0.00 0.00 3.41
461 477 5.127031 ACAAATATTCGGGTCCCATTTTCAG 59.873 40.000 9.12 0.00 0.00 3.02
462 478 5.020132 ACAAATATTCGGGTCCCATTTTCA 58.980 37.500 9.12 0.00 0.00 2.69
463 479 5.105513 ACACAAATATTCGGGTCCCATTTTC 60.106 40.000 9.12 0.00 0.00 2.29
464 480 4.775253 ACACAAATATTCGGGTCCCATTTT 59.225 37.500 9.12 0.00 0.00 1.82
465 481 4.349365 ACACAAATATTCGGGTCCCATTT 58.651 39.130 9.12 3.39 0.00 2.32
466 482 3.976015 ACACAAATATTCGGGTCCCATT 58.024 40.909 9.12 0.00 0.00 3.16
467 483 3.662759 ACACAAATATTCGGGTCCCAT 57.337 42.857 9.12 0.00 0.00 4.00
468 484 3.443145 AACACAAATATTCGGGTCCCA 57.557 42.857 9.12 0.00 0.00 4.37
469 485 4.794278 AAAACACAAATATTCGGGTCCC 57.206 40.909 0.00 0.00 0.00 4.46
508 524 5.767277 TTTAGGACGGAGGGAGTATTTTT 57.233 39.130 0.00 0.00 0.00 1.94
509 525 5.767277 TTTTAGGACGGAGGGAGTATTTT 57.233 39.130 0.00 0.00 0.00 1.82
510 526 5.970501 ATTTTAGGACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
511 527 6.614496 ACTTATTTTAGGACGGAGGGAGTATT 59.386 38.462 0.00 0.00 0.00 1.89
512 528 6.041751 CACTTATTTTAGGACGGAGGGAGTAT 59.958 42.308 0.00 0.00 0.00 2.12
513 529 5.361857 CACTTATTTTAGGACGGAGGGAGTA 59.638 44.000 0.00 0.00 0.00 2.59
514 530 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
515 531 4.404715 TCACTTATTTTAGGACGGAGGGAG 59.595 45.833 0.00 0.00 0.00 4.30
516 532 4.161001 GTCACTTATTTTAGGACGGAGGGA 59.839 45.833 0.00 0.00 0.00 4.20
517 533 4.161754 AGTCACTTATTTTAGGACGGAGGG 59.838 45.833 0.00 0.00 33.84 4.30
518 534 5.105473 TGAGTCACTTATTTTAGGACGGAGG 60.105 44.000 0.00 0.00 33.84 4.30
519 535 5.962433 TGAGTCACTTATTTTAGGACGGAG 58.038 41.667 0.00 0.00 33.84 4.63
520 536 5.988310 TGAGTCACTTATTTTAGGACGGA 57.012 39.130 0.00 0.00 33.84 4.69
521 537 6.164176 AGTTGAGTCACTTATTTTAGGACGG 58.836 40.000 0.00 0.00 33.84 4.79
522 538 7.653767 AAGTTGAGTCACTTATTTTAGGACG 57.346 36.000 0.00 0.00 35.10 4.79
559 575 9.023967 CAAGTTTGTACTAACTTTGTACGTACT 57.976 33.333 26.14 8.34 43.85 2.73
560 576 9.019764 TCAAGTTTGTACTAACTTTGTACGTAC 57.980 33.333 26.14 18.90 43.85 3.67
561 577 9.236691 CTCAAGTTTGTACTAACTTTGTACGTA 57.763 33.333 26.14 10.04 43.85 3.57
562 578 7.761249 ACTCAAGTTTGTACTAACTTTGTACGT 59.239 33.333 26.14 17.21 43.85 3.57
563 579 8.123445 ACTCAAGTTTGTACTAACTTTGTACG 57.877 34.615 26.14 17.26 43.85 3.67
564 580 9.090692 TGACTCAAGTTTGTACTAACTTTGTAC 57.909 33.333 26.14 19.04 43.85 2.90
565 581 9.090692 GTGACTCAAGTTTGTACTAACTTTGTA 57.909 33.333 26.14 16.32 43.85 2.41
566 582 7.822822 AGTGACTCAAGTTTGTACTAACTTTGT 59.177 33.333 26.14 25.01 43.85 2.83
567 583 8.197988 AGTGACTCAAGTTTGTACTAACTTTG 57.802 34.615 26.14 22.84 43.85 2.77
568 584 8.788325 AAGTGACTCAAGTTTGTACTAACTTT 57.212 30.769 26.14 15.97 43.85 2.66
570 586 9.694137 GATAAGTGACTCAAGTTTGTACTAACT 57.306 33.333 15.68 15.68 39.97 2.24
571 587 9.694137 AGATAAGTGACTCAAGTTTGTACTAAC 57.306 33.333 11.62 11.62 33.17 2.34
573 589 9.692749 CAAGATAAGTGACTCAAGTTTGTACTA 57.307 33.333 0.00 0.00 33.17 1.82
574 590 7.657761 CCAAGATAAGTGACTCAAGTTTGTACT 59.342 37.037 0.00 0.00 35.68 2.73
575 591 7.095187 CCCAAGATAAGTGACTCAAGTTTGTAC 60.095 40.741 0.00 0.00 0.00 2.90
576 592 6.934645 CCCAAGATAAGTGACTCAAGTTTGTA 59.065 38.462 0.00 0.00 0.00 2.41
577 593 5.765182 CCCAAGATAAGTGACTCAAGTTTGT 59.235 40.000 0.00 0.00 0.00 2.83
578 594 5.997746 TCCCAAGATAAGTGACTCAAGTTTG 59.002 40.000 0.00 0.00 0.00 2.93
579 595 5.998363 GTCCCAAGATAAGTGACTCAAGTTT 59.002 40.000 0.00 0.00 0.00 2.66
580 596 5.552178 GTCCCAAGATAAGTGACTCAAGTT 58.448 41.667 0.00 0.00 0.00 2.66
581 597 4.322049 CGTCCCAAGATAAGTGACTCAAGT 60.322 45.833 0.00 0.00 0.00 3.16
582 598 4.177026 CGTCCCAAGATAAGTGACTCAAG 58.823 47.826 0.00 0.00 0.00 3.02
583 599 3.056107 CCGTCCCAAGATAAGTGACTCAA 60.056 47.826 0.00 0.00 0.00 3.02
584 600 2.496070 CCGTCCCAAGATAAGTGACTCA 59.504 50.000 0.00 0.00 0.00 3.41
585 601 2.758979 TCCGTCCCAAGATAAGTGACTC 59.241 50.000 0.00 0.00 0.00 3.36
586 602 2.761208 CTCCGTCCCAAGATAAGTGACT 59.239 50.000 0.00 0.00 0.00 3.41
587 603 2.159085 CCTCCGTCCCAAGATAAGTGAC 60.159 54.545 0.00 0.00 0.00 3.67
588 604 2.108168 CCTCCGTCCCAAGATAAGTGA 58.892 52.381 0.00 0.00 0.00 3.41
589 605 1.139058 CCCTCCGTCCCAAGATAAGTG 59.861 57.143 0.00 0.00 0.00 3.16
590 606 1.007963 TCCCTCCGTCCCAAGATAAGT 59.992 52.381 0.00 0.00 0.00 2.24
591 607 1.689273 CTCCCTCCGTCCCAAGATAAG 59.311 57.143 0.00 0.00 0.00 1.73
592 608 1.007963 ACTCCCTCCGTCCCAAGATAA 59.992 52.381 0.00 0.00 0.00 1.75
593 609 0.635009 ACTCCCTCCGTCCCAAGATA 59.365 55.000 0.00 0.00 0.00 1.98
594 610 0.635009 TACTCCCTCCGTCCCAAGAT 59.365 55.000 0.00 0.00 0.00 2.40
595 611 0.324091 GTACTCCCTCCGTCCCAAGA 60.324 60.000 0.00 0.00 0.00 3.02
596 612 0.324460 AGTACTCCCTCCGTCCCAAG 60.324 60.000 0.00 0.00 0.00 3.61
597 613 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
598 614 0.613853 CAAGTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
599 615 0.614134 ACAAGTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
600 616 1.264295 AACAAGTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
601 617 5.841957 TTATAACAAGTACTCCCTCCGTC 57.158 43.478 0.00 0.00 0.00 4.79
602 618 7.201947 GGTTATTATAACAAGTACTCCCTCCGT 60.202 40.741 15.80 0.00 0.00 4.69
603 619 7.150640 GGTTATTATAACAAGTACTCCCTCCG 58.849 42.308 15.80 0.00 0.00 4.63
604 620 7.291885 AGGGTTATTATAACAAGTACTCCCTCC 59.708 40.741 15.80 4.51 35.98 4.30
605 621 8.260099 AGGGTTATTATAACAAGTACTCCCTC 57.740 38.462 15.80 0.00 35.98 4.30
606 622 8.072480 AGAGGGTTATTATAACAAGTACTCCCT 58.928 37.037 15.80 9.50 42.33 4.20
607 623 8.260099 AGAGGGTTATTATAACAAGTACTCCC 57.740 38.462 15.80 6.25 0.00 4.30
608 624 8.366401 GGAGAGGGTTATTATAACAAGTACTCC 58.634 40.741 15.80 17.74 0.00 3.85
609 625 8.366401 GGGAGAGGGTTATTATAACAAGTACTC 58.634 40.741 15.80 14.12 0.00 2.59
610 626 8.072480 AGGGAGAGGGTTATTATAACAAGTACT 58.928 37.037 15.80 7.89 0.00 2.73
611 627 8.148999 CAGGGAGAGGGTTATTATAACAAGTAC 58.851 40.741 15.80 5.28 0.00 2.73
612 628 8.069356 TCAGGGAGAGGGTTATTATAACAAGTA 58.931 37.037 15.80 0.00 0.00 2.24
613 629 6.906901 TCAGGGAGAGGGTTATTATAACAAGT 59.093 38.462 15.80 0.97 0.00 3.16
614 630 7.217906 GTCAGGGAGAGGGTTATTATAACAAG 58.782 42.308 15.80 0.00 0.00 3.16
615 631 6.100714 GGTCAGGGAGAGGGTTATTATAACAA 59.899 42.308 15.80 0.00 0.00 2.83
616 632 5.605488 GGTCAGGGAGAGGGTTATTATAACA 59.395 44.000 15.80 0.00 0.00 2.41
617 633 5.012871 GGGTCAGGGAGAGGGTTATTATAAC 59.987 48.000 6.56 6.56 0.00 1.89
618 634 5.160386 GGGTCAGGGAGAGGGTTATTATAA 58.840 45.833 0.00 0.00 0.00 0.98
619 635 4.451760 GGGGTCAGGGAGAGGGTTATTATA 60.452 50.000 0.00 0.00 0.00 0.98
620 636 3.599348 GGGTCAGGGAGAGGGTTATTAT 58.401 50.000 0.00 0.00 0.00 1.28
621 637 2.361070 GGGGTCAGGGAGAGGGTTATTA 60.361 54.545 0.00 0.00 0.00 0.98
622 638 1.628327 GGGGTCAGGGAGAGGGTTATT 60.628 57.143 0.00 0.00 0.00 1.40
623 639 0.029989 GGGGTCAGGGAGAGGGTTAT 60.030 60.000 0.00 0.00 0.00 1.89
654 670 8.971073 ACCTTTTATTTTTAGATGGGATCACTG 58.029 33.333 0.00 0.00 0.00 3.66
815 842 2.026729 GTGGAGGAAGGAAGGAAGGAAG 60.027 54.545 0.00 0.00 0.00 3.46
816 843 1.985895 GTGGAGGAAGGAAGGAAGGAA 59.014 52.381 0.00 0.00 0.00 3.36
817 844 1.657804 GTGGAGGAAGGAAGGAAGGA 58.342 55.000 0.00 0.00 0.00 3.36
818 845 0.621082 GGTGGAGGAAGGAAGGAAGG 59.379 60.000 0.00 0.00 0.00 3.46
819 846 0.621082 GGGTGGAGGAAGGAAGGAAG 59.379 60.000 0.00 0.00 0.00 3.46
939 974 3.140814 GGATCCGGCAAAGGTGGC 61.141 66.667 0.00 0.00 46.67 5.01
970 1005 1.373536 AAGGGAGAAAGGGAAGGGAC 58.626 55.000 0.00 0.00 0.00 4.46
1014 1059 3.829048 GACGAGATCCAGCCGAGA 58.171 61.111 0.00 0.00 0.00 4.04
1264 1309 0.110147 CCCTAGATCGTGATCGCGAC 60.110 60.000 31.68 23.57 43.99 5.19
1340 1390 4.271291 GGAACGATCTAGATCAAAACAGGC 59.729 45.833 27.97 10.71 37.69 4.85
1342 1392 6.968131 TTGGAACGATCTAGATCAAAACAG 57.032 37.500 27.97 15.25 37.69 3.16
1446 1496 3.490590 GGCACACACAACACAATGATGAA 60.491 43.478 0.00 0.00 0.00 2.57
1447 1497 2.034432 GGCACACACAACACAATGATGA 59.966 45.455 0.00 0.00 0.00 2.92
1543 1594 6.258947 GCCAGATCTGATTTAAAGTAGACACC 59.741 42.308 24.62 1.54 0.00 4.16
1592 1661 9.651913 TCACAATTGCTAGTTTCTTTTCTTTTT 57.348 25.926 5.05 0.00 0.00 1.94
1757 1876 3.790123 GCGTCAGCCATTCAAATTCTAGC 60.790 47.826 0.00 0.00 37.42 3.42
1760 1879 2.161855 TGCGTCAGCCATTCAAATTCT 58.838 42.857 0.00 0.00 44.33 2.40
1787 1906 1.468985 ATACAGTGCTCAGACGCTCT 58.531 50.000 0.00 0.00 34.37 4.09
1841 1961 2.507324 GGCCGTGCTTCGAGAGAC 60.507 66.667 0.00 0.00 41.84 3.36
1873 1993 7.629157 TGGTGTAATAGATTGATCAAGAACCA 58.371 34.615 14.54 13.60 0.00 3.67
1915 2036 3.049912 GGCAGTTCAAATCCAAAACGTC 58.950 45.455 0.00 0.00 0.00 4.34
1917 2038 3.090952 TGGCAGTTCAAATCCAAAACG 57.909 42.857 0.00 0.00 0.00 3.60
1925 2046 3.380004 TGAGACGTTTTGGCAGTTCAAAT 59.620 39.130 0.00 0.00 36.63 2.32
2148 2472 6.682746 TCACTTGCTAAAACAAAACTTGTCA 58.317 32.000 0.00 0.00 44.59 3.58
2276 3311 7.628234 CAGTATCCCATATCTGAGCCTTAATT 58.372 38.462 0.00 0.00 0.00 1.40
2516 3551 2.191400 TCCTTCTCTGCTAATGCCTGT 58.809 47.619 0.00 0.00 38.71 4.00
2899 3935 1.829222 ACACACGGTATCTACCAAGGG 59.171 52.381 7.16 2.16 46.80 3.95
3012 4189 5.310451 TCGGGGCATATAATGTTTTAGGAC 58.690 41.667 0.00 0.00 0.00 3.85
3019 4197 3.686016 GGTGATCGGGGCATATAATGTT 58.314 45.455 0.00 0.00 0.00 2.71
3037 4216 2.281070 ACTGTTGCTGCTCCGGTG 60.281 61.111 0.00 0.00 0.00 4.94
3048 4227 8.811017 ACAAGAGATAGATATATCCCACTGTTG 58.189 37.037 23.06 23.06 34.01 3.33
3134 4322 3.616379 CACGGTTTGCAAGAACAATGTTT 59.384 39.130 0.00 0.00 0.00 2.83
3153 4350 4.105727 CAGATGAGCTGCTCCACG 57.894 61.111 25.61 8.86 37.90 4.94
3193 4392 5.784578 ACAAAACCCATACAAAGAGGAAC 57.215 39.130 0.00 0.00 0.00 3.62
3194 4393 5.009210 CGAACAAAACCCATACAAAGAGGAA 59.991 40.000 0.00 0.00 0.00 3.36
3195 4394 4.517453 CGAACAAAACCCATACAAAGAGGA 59.483 41.667 0.00 0.00 0.00 3.71
3196 4395 4.517453 TCGAACAAAACCCATACAAAGAGG 59.483 41.667 0.00 0.00 0.00 3.69
3197 4396 5.682943 TCGAACAAAACCCATACAAAGAG 57.317 39.130 0.00 0.00 0.00 2.85
3198 4397 5.182380 GGATCGAACAAAACCCATACAAAGA 59.818 40.000 0.00 0.00 0.00 2.52
3199 4398 5.183140 AGGATCGAACAAAACCCATACAAAG 59.817 40.000 0.00 0.00 0.00 2.77
3200 4399 5.048364 CAGGATCGAACAAAACCCATACAAA 60.048 40.000 0.00 0.00 0.00 2.83
3201 4400 4.457603 CAGGATCGAACAAAACCCATACAA 59.542 41.667 0.00 0.00 0.00 2.41
3202 4401 4.006989 CAGGATCGAACAAAACCCATACA 58.993 43.478 0.00 0.00 0.00 2.29
3203 4402 3.181500 GCAGGATCGAACAAAACCCATAC 60.181 47.826 0.00 0.00 0.00 2.39
3204 4403 3.013921 GCAGGATCGAACAAAACCCATA 58.986 45.455 0.00 0.00 0.00 2.74
3205 4404 1.818674 GCAGGATCGAACAAAACCCAT 59.181 47.619 0.00 0.00 0.00 4.00
3206 4405 1.202879 AGCAGGATCGAACAAAACCCA 60.203 47.619 0.00 0.00 0.00 4.51
3207 4406 1.534729 AGCAGGATCGAACAAAACCC 58.465 50.000 0.00 0.00 0.00 4.11
3208 4407 2.922335 GCAAGCAGGATCGAACAAAACC 60.922 50.000 0.00 0.00 0.00 3.27
3209 4408 2.287547 TGCAAGCAGGATCGAACAAAAC 60.288 45.455 0.00 0.00 0.00 2.43
3210 4409 1.952990 TGCAAGCAGGATCGAACAAAA 59.047 42.857 0.00 0.00 0.00 2.44
3211 4410 1.266718 GTGCAAGCAGGATCGAACAAA 59.733 47.619 0.00 0.00 0.00 2.83
3212 4411 0.874390 GTGCAAGCAGGATCGAACAA 59.126 50.000 0.00 0.00 0.00 2.83
3213 4412 0.250252 TGTGCAAGCAGGATCGAACA 60.250 50.000 0.00 0.00 0.00 3.18
3214 4413 1.089920 ATGTGCAAGCAGGATCGAAC 58.910 50.000 0.00 0.00 0.00 3.95
3215 4414 1.739466 GAATGTGCAAGCAGGATCGAA 59.261 47.619 0.00 0.00 0.00 3.71
3216 4415 1.065926 AGAATGTGCAAGCAGGATCGA 60.066 47.619 0.00 0.00 0.00 3.59
3217 4416 1.329906 GAGAATGTGCAAGCAGGATCG 59.670 52.381 0.00 0.00 0.00 3.69
3293 4502 4.820775 TCTATATCTTGGAACTGGAGCCT 58.179 43.478 0.00 0.00 0.00 4.58
3295 4504 4.934602 GCATCTATATCTTGGAACTGGAGC 59.065 45.833 0.00 0.00 0.00 4.70
3330 4568 1.471119 CATCCCATTGCTGCTGTTCT 58.529 50.000 0.00 0.00 0.00 3.01
3410 4648 1.988956 CCAGGTGAGCTGCTCCTCT 60.989 63.158 25.61 19.02 38.41 3.69
3452 4690 2.298629 CGCGAGCAGGATCATCGTG 61.299 63.158 0.00 2.77 40.10 4.35
3453 4691 2.026734 CGCGAGCAGGATCATCGT 59.973 61.111 0.00 0.00 38.66 3.73
3616 4882 2.176889 GCCTCTGGACCTGTACTGTAA 58.823 52.381 0.00 0.00 0.00 2.41
3624 4895 4.087892 CCGTGGCCTCTGGACCTG 62.088 72.222 3.32 0.00 0.00 4.00
3689 4961 1.869767 CATAAAGGCGGAGATGAGTGC 59.130 52.381 0.00 0.00 0.00 4.40
3962 5593 6.644663 AAGGGTTCCCTTACAGTCTTTCTGT 61.645 44.000 20.22 5.82 46.13 3.41
3963 5594 3.328050 AGGGTTCCCTTACAGTCTTTCTG 59.672 47.826 4.31 0.00 40.60 3.02
3964 5595 3.599348 AGGGTTCCCTTACAGTCTTTCT 58.401 45.455 4.31 0.00 31.29 2.52
3974 5605 7.406739 ACCAATTATACTGTAAGGGTTCCCTTA 59.593 37.037 22.17 22.17 43.90 2.69
3975 5606 6.218938 ACCAATTATACTGTAAGGGTTCCCTT 59.781 38.462 24.08 24.08 46.89 3.95
3976 5607 5.734634 ACCAATTATACTGTAAGGGTTCCCT 59.265 40.000 4.31 4.31 39.30 4.20
3977 5608 5.826208 CACCAATTATACTGTAAGGGTTCCC 59.174 44.000 0.00 0.00 39.30 3.97
3978 5609 5.298527 GCACCAATTATACTGTAAGGGTTCC 59.701 44.000 0.00 0.00 39.30 3.62
3979 5610 5.883673 TGCACCAATTATACTGTAAGGGTTC 59.116 40.000 0.00 0.00 39.30 3.62
3980 5611 5.822204 TGCACCAATTATACTGTAAGGGTT 58.178 37.500 0.00 0.00 39.30 4.11
3981 5612 5.444744 TGCACCAATTATACTGTAAGGGT 57.555 39.130 0.00 0.00 39.30 4.34
3982 5613 5.650266 TGTTGCACCAATTATACTGTAAGGG 59.350 40.000 0.00 0.00 39.30 3.95
3983 5614 6.751514 TGTTGCACCAATTATACTGTAAGG 57.248 37.500 0.00 0.00 39.30 2.69
3984 5615 7.540745 GGTTTGTTGCACCAATTATACTGTAAG 59.459 37.037 0.00 0.00 35.28 2.34
3985 5616 7.371936 GGTTTGTTGCACCAATTATACTGTAA 58.628 34.615 0.00 0.00 34.04 2.41
3986 5617 6.071840 GGGTTTGTTGCACCAATTATACTGTA 60.072 38.462 0.00 0.00 35.80 2.74
3987 5618 5.279256 GGGTTTGTTGCACCAATTATACTGT 60.279 40.000 0.00 0.00 35.80 3.55
3988 5619 5.167845 GGGTTTGTTGCACCAATTATACTG 58.832 41.667 0.00 0.00 35.80 2.74
3989 5620 4.835615 TGGGTTTGTTGCACCAATTATACT 59.164 37.500 0.00 0.00 35.80 2.12
3990 5621 5.140747 TGGGTTTGTTGCACCAATTATAC 57.859 39.130 0.00 0.00 35.80 1.47
3991 5622 5.808366 TTGGGTTTGTTGCACCAATTATA 57.192 34.783 0.00 0.00 38.02 0.98
3992 5623 4.696479 TTGGGTTTGTTGCACCAATTAT 57.304 36.364 0.00 0.00 38.02 1.28
3993 5624 4.487714 TTTGGGTTTGTTGCACCAATTA 57.512 36.364 0.00 0.00 42.09 1.40
3994 5625 3.356529 TTTGGGTTTGTTGCACCAATT 57.643 38.095 0.00 0.00 42.09 2.32
3995 5626 3.574354 ATTTGGGTTTGTTGCACCAAT 57.426 38.095 0.00 0.00 42.09 3.16
3996 5627 3.012518 CAATTTGGGTTTGTTGCACCAA 58.987 40.909 0.00 0.00 40.94 3.67
3997 5628 2.636830 CAATTTGGGTTTGTTGCACCA 58.363 42.857 0.00 0.00 35.80 4.17
3998 5629 1.333308 GCAATTTGGGTTTGTTGCACC 59.667 47.619 4.26 0.00 44.63 5.01
3999 5630 2.753989 GCAATTTGGGTTTGTTGCAC 57.246 45.000 4.26 0.00 44.63 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.