Multiple sequence alignment - TraesCS5D01G498400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G498400 chr5D 100.000 2645 0 0 1 2645 528231634 528228990 0.000000e+00 4885.0
1 TraesCS5D01G498400 chr5D 73.750 480 99 19 1057 1520 212627322 212627790 2.110000e-36 163.0
2 TraesCS5D01G498400 chr5A 86.918 1911 149 48 1 1855 656211743 656209878 0.000000e+00 2050.0
3 TraesCS5D01G498400 chr5A 82.949 217 25 8 2326 2542 656209838 656209634 4.500000e-43 185.0
4 TraesCS5D01G498400 chr5B 91.978 1284 57 28 683 1950 664999073 664997820 0.000000e+00 1759.0
5 TraesCS5D01G498400 chr5B 90.500 200 12 5 2356 2554 664996136 664995943 9.390000e-65 257.0
6 TraesCS5D01G498400 chr2D 86.856 738 78 13 917 1645 167428142 167428869 0.000000e+00 808.0
7 TraesCS5D01G498400 chr2D 79.710 345 70 0 1202 1546 377503398 377503054 1.570000e-62 250.0
8 TraesCS5D01G498400 chr2D 81.111 90 10 3 725 808 167427975 167428063 6.110000e-07 65.8
9 TraesCS5D01G498400 chr2B 86.874 739 76 15 917 1645 230594692 230593965 0.000000e+00 808.0
10 TraesCS5D01G498400 chr2B 80.000 345 69 0 1202 1546 449120461 449120117 3.380000e-64 255.0
11 TraesCS5D01G498400 chr2B 97.297 37 1 0 772 808 230594808 230594772 2.200000e-06 63.9
12 TraesCS5D01G498400 chr2A 87.042 710 76 10 943 1645 183208152 183207452 0.000000e+00 787.0
13 TraesCS5D01G498400 chr2A 76.801 694 89 43 1 671 55933903 55933259 9.130000e-85 324.0
14 TraesCS5D01G498400 chr2A 80.403 347 68 0 1200 1546 511922961 511922615 5.610000e-67 265.0
15 TraesCS5D01G498400 chr2A 80.952 84 13 2 725 808 183208338 183208258 2.200000e-06 63.9
16 TraesCS5D01G498400 chr7B 74.771 654 116 38 32 668 542933379 542934000 5.650000e-62 248.0
17 TraesCS5D01G498400 chr3B 78.961 385 56 17 289 668 803040421 803040785 3.400000e-59 239.0
18 TraesCS5D01G498400 chr3B 79.717 212 32 8 460 671 35714577 35714777 2.740000e-30 143.0
19 TraesCS5D01G498400 chr3B 79.245 212 32 9 460 671 35386737 35386936 1.280000e-28 137.0
20 TraesCS5D01G498400 chr4B 82.710 214 26 7 459 671 619959610 619959813 2.090000e-41 180.0
21 TraesCS5D01G498400 chr6A 80.702 228 31 9 423 646 22411026 22411244 5.860000e-37 165.0
22 TraesCS5D01G498400 chr6A 76.587 252 42 15 426 671 588043500 588043740 3.580000e-24 122.0
23 TraesCS5D01G498400 chrUn 79.717 212 31 9 460 671 202824055 202823856 2.740000e-30 143.0
24 TraesCS5D01G498400 chrUn 79.717 212 31 9 460 671 320755088 320754889 2.740000e-30 143.0
25 TraesCS5D01G498400 chrUn 79.717 212 31 9 460 671 395443206 395443007 2.740000e-30 143.0
26 TraesCS5D01G498400 chr7D 77.447 235 40 9 440 671 220635715 220635491 7.680000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G498400 chr5D 528228990 528231634 2644 True 4885.00 4885 100.0000 1 2645 1 chr5D.!!$R1 2644
1 TraesCS5D01G498400 chr5A 656209634 656211743 2109 True 1117.50 2050 84.9335 1 2542 2 chr5A.!!$R1 2541
2 TraesCS5D01G498400 chr5B 664995943 664999073 3130 True 1008.00 1759 91.2390 683 2554 2 chr5B.!!$R1 1871
3 TraesCS5D01G498400 chr2D 167427975 167428869 894 False 436.90 808 83.9835 725 1645 2 chr2D.!!$F1 920
4 TraesCS5D01G498400 chr2B 230593965 230594808 843 True 435.95 808 92.0855 772 1645 2 chr2B.!!$R2 873
5 TraesCS5D01G498400 chr2A 183207452 183208338 886 True 425.45 787 83.9970 725 1645 2 chr2A.!!$R3 920
6 TraesCS5D01G498400 chr2A 55933259 55933903 644 True 324.00 324 76.8010 1 671 1 chr2A.!!$R1 670
7 TraesCS5D01G498400 chr7B 542933379 542934000 621 False 248.00 248 74.7710 32 668 1 chr7B.!!$F1 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 1072 0.109781 GCTTGATTTCAAAGCGCCGA 60.11 50.0 2.29 0.0 35.15 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2183 3887 0.03759 TCCTGCAGTAACCCGCAAAT 59.962 50.0 13.81 0.0 37.76 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.049474 TGTGGATTCAGAAAATGTTCACGAG 60.049 40.000 0.00 0.00 36.09 4.18
27 28 4.083324 TGGATTCAGAAAATGTTCACGAGC 60.083 41.667 0.00 0.00 36.09 5.03
28 29 3.896648 TTCAGAAAATGTTCACGAGCC 57.103 42.857 0.00 0.00 36.09 4.70
30 31 3.476552 TCAGAAAATGTTCACGAGCCTT 58.523 40.909 0.00 0.00 36.09 4.35
329 353 9.609950 ACTGTTTGTGAATTTCAAAAATTGTTG 57.390 25.926 15.90 1.55 36.14 3.33
350 374 6.071728 TGTTGCACCAAACAATTTCCAAAAAT 60.072 30.769 0.00 0.00 37.12 1.82
376 400 8.786826 ATGTTCGTCAAACCTAGAAATATTGA 57.213 30.769 0.00 0.00 37.03 2.57
377 401 8.786826 TGTTCGTCAAACCTAGAAATATTGAT 57.213 30.769 0.00 0.00 37.03 2.57
568 686 6.703607 ACGATTTCATGATAATGAGAGTGGTC 59.296 38.462 0.00 0.00 31.46 4.02
588 706 4.215827 GGTCGTGTATCTAGGTGATGTAGG 59.784 50.000 0.00 0.00 36.65 3.18
604 722 6.772716 GTGATGTAGGAAAATATGGTCATGGT 59.227 38.462 0.00 0.00 0.00 3.55
608 726 6.772233 TGTAGGAAAATATGGTCATGGTCATG 59.228 38.462 4.67 4.67 40.09 3.07
609 727 5.142639 AGGAAAATATGGTCATGGTCATGG 58.857 41.667 10.61 0.00 39.24 3.66
610 728 4.262164 GGAAAATATGGTCATGGTCATGGC 60.262 45.833 10.61 8.86 42.41 4.40
617 735 0.397394 TCATGGTCATGGCCATTGGG 60.397 55.000 29.36 18.09 46.33 4.12
669 795 0.110373 GCACGGACCGTTTTTGCTAG 60.110 55.000 19.02 4.43 38.32 3.42
673 799 1.868498 CGGACCGTTTTTGCTAGTTGA 59.132 47.619 5.48 0.00 0.00 3.18
679 805 3.500680 CCGTTTTTGCTAGTTGAGGCTAA 59.499 43.478 0.00 0.00 0.00 3.09
681 807 5.506649 CCGTTTTTGCTAGTTGAGGCTAAAA 60.507 40.000 0.00 0.00 39.39 1.52
682 808 5.974751 CGTTTTTGCTAGTTGAGGCTAAAAA 59.025 36.000 8.29 0.00 41.63 1.94
714 840 3.402110 CTCACCTGCACATAGTCAAACA 58.598 45.455 0.00 0.00 0.00 2.83
905 1071 0.387112 TGCTTGATTTCAAAGCGCCG 60.387 50.000 2.29 0.00 35.15 6.46
906 1072 0.109781 GCTTGATTTCAAAGCGCCGA 60.110 50.000 2.29 0.00 35.15 5.54
985 1174 2.550855 CCACACCAAGCACAGTACAGAT 60.551 50.000 0.00 0.00 0.00 2.90
989 1178 2.093447 ACCAAGCACAGTACAGATAGCC 60.093 50.000 0.00 0.00 0.00 3.93
993 1182 1.676529 GCACAGTACAGATAGCCGAGA 59.323 52.381 0.00 0.00 0.00 4.04
1110 1308 1.655654 CGCGCTCATCGTCTACCTG 60.656 63.158 5.56 0.00 41.07 4.00
1659 1857 3.676646 GCACGTGAAGGAAATTACGTACT 59.323 43.478 22.23 0.00 46.62 2.73
1684 1883 3.869246 CGTGCCTACGTGGAAGAAATTAT 59.131 43.478 0.00 0.00 44.99 1.28
1688 1887 5.813672 TGCCTACGTGGAAGAAATTATGTAC 59.186 40.000 0.00 0.00 38.35 2.90
1689 1888 6.047231 GCCTACGTGGAAGAAATTATGTACT 58.953 40.000 0.00 0.00 38.35 2.73
1690 1889 7.147863 TGCCTACGTGGAAGAAATTATGTACTA 60.148 37.037 0.00 0.00 38.35 1.82
1691 1890 7.707893 GCCTACGTGGAAGAAATTATGTACTAA 59.292 37.037 0.00 0.00 38.35 2.24
1692 1891 9.245962 CCTACGTGGAAGAAATTATGTACTAAG 57.754 37.037 0.00 0.00 38.35 2.18
1693 1892 9.798994 CTACGTGGAAGAAATTATGTACTAAGT 57.201 33.333 0.00 0.00 0.00 2.24
1763 1975 9.458374 AAATGTACTTCAATTTTGGAACTAACG 57.542 29.630 0.00 0.00 0.00 3.18
1809 2023 4.974888 CGTCGCATCATGATCTATCTATGG 59.025 45.833 4.86 0.00 0.00 2.74
1811 2025 4.056740 CGCATCATGATCTATCTATGGGC 58.943 47.826 4.86 1.25 0.00 5.36
1820 2034 5.419155 TGATCTATCTATGGGCCGTTAAGAG 59.581 44.000 2.17 0.00 0.00 2.85
1845 2059 6.106673 CGGGCATATATAAGTTCTTCCGAAT 58.893 40.000 0.00 0.00 36.30 3.34
1846 2060 7.262772 CGGGCATATATAAGTTCTTCCGAATA 58.737 38.462 0.00 0.00 36.30 1.75
1870 2084 9.835389 ATATTTAAAATGTAAATGGTGCAGCAT 57.165 25.926 25.20 25.20 0.00 3.79
1897 2111 4.635699 AGTTCTCCCGAATGGTTTAGTT 57.364 40.909 0.00 0.00 34.77 2.24
1901 2115 3.998341 TCTCCCGAATGGTTTAGTTTTCG 59.002 43.478 0.00 0.00 40.34 3.46
1903 2117 3.499157 TCCCGAATGGTTTAGTTTTCGTG 59.501 43.478 0.00 0.00 39.33 4.35
1905 2119 4.460505 CCGAATGGTTTAGTTTTCGTGTC 58.539 43.478 0.00 0.00 39.33 3.67
1918 2132 5.989168 AGTTTTCGTGTCATGTCTCATGTAA 59.011 36.000 9.13 0.00 0.00 2.41
1921 2135 3.057806 TCGTGTCATGTCTCATGTAACGT 60.058 43.478 23.55 0.00 33.82 3.99
2026 3720 3.246699 CGAACGACAACGGGCATATAAAT 59.753 43.478 0.00 0.00 44.46 1.40
2034 3728 5.204833 CAACGGGCATATAAATGTTCTTCG 58.795 41.667 0.00 0.00 35.38 3.79
2047 3741 7.940178 AAATGTTCTTCGGAATGGTTTAAAC 57.060 32.000 9.98 9.98 36.27 2.01
2104 3808 0.938713 TTTGTAGTTTGTCCGCGTGG 59.061 50.000 9.28 9.28 0.00 4.94
2129 3833 3.006537 CGAGAAAACACTAGGGTCTTCCA 59.993 47.826 7.59 0.00 38.24 3.53
2130 3834 4.502604 CGAGAAAACACTAGGGTCTTCCAA 60.503 45.833 7.59 0.00 38.24 3.53
2131 3835 4.715713 AGAAAACACTAGGGTCTTCCAAC 58.284 43.478 7.59 0.00 38.24 3.77
2132 3836 2.833631 AACACTAGGGTCTTCCAACG 57.166 50.000 0.00 0.00 38.24 4.10
2133 3837 0.320697 ACACTAGGGTCTTCCAACGC 59.679 55.000 0.00 0.00 38.24 4.84
2135 3839 1.053424 ACTAGGGTCTTCCAACGCAA 58.947 50.000 0.00 0.00 38.24 4.85
2136 3840 1.418637 ACTAGGGTCTTCCAACGCAAA 59.581 47.619 0.00 0.00 38.24 3.68
2137 3841 2.158726 ACTAGGGTCTTCCAACGCAAAA 60.159 45.455 0.00 0.00 38.24 2.44
2138 3842 1.318576 AGGGTCTTCCAACGCAAAAG 58.681 50.000 0.00 0.00 38.24 2.27
2139 3843 0.318699 GGGTCTTCCAACGCAAAAGC 60.319 55.000 0.00 0.00 35.00 3.51
2140 3844 0.383949 GGTCTTCCAACGCAAAAGCA 59.616 50.000 0.00 0.00 0.00 3.91
2141 3845 1.000274 GGTCTTCCAACGCAAAAGCAT 60.000 47.619 0.00 0.00 0.00 3.79
2142 3846 2.319472 GTCTTCCAACGCAAAAGCATC 58.681 47.619 0.00 0.00 0.00 3.91
2143 3847 1.269448 TCTTCCAACGCAAAAGCATCC 59.731 47.619 0.00 0.00 0.00 3.51
2144 3848 0.316841 TTCCAACGCAAAAGCATCCC 59.683 50.000 0.00 0.00 0.00 3.85
2145 3849 0.825425 TCCAACGCAAAAGCATCCCA 60.825 50.000 0.00 0.00 0.00 4.37
2146 3850 0.033228 CCAACGCAAAAGCATCCCAA 59.967 50.000 0.00 0.00 0.00 4.12
2147 3851 1.139163 CAACGCAAAAGCATCCCAAC 58.861 50.000 0.00 0.00 0.00 3.77
2148 3852 0.749649 AACGCAAAAGCATCCCAACA 59.250 45.000 0.00 0.00 0.00 3.33
2149 3853 0.031994 ACGCAAAAGCATCCCAACAC 59.968 50.000 0.00 0.00 0.00 3.32
2150 3854 0.667184 CGCAAAAGCATCCCAACACC 60.667 55.000 0.00 0.00 0.00 4.16
2151 3855 0.667184 GCAAAAGCATCCCAACACCG 60.667 55.000 0.00 0.00 0.00 4.94
2152 3856 0.958091 CAAAAGCATCCCAACACCGA 59.042 50.000 0.00 0.00 0.00 4.69
2153 3857 1.545582 CAAAAGCATCCCAACACCGAT 59.454 47.619 0.00 0.00 0.00 4.18
2154 3858 1.463674 AAAGCATCCCAACACCGATC 58.536 50.000 0.00 0.00 0.00 3.69
2155 3859 0.620556 AAGCATCCCAACACCGATCT 59.379 50.000 0.00 0.00 0.00 2.75
2156 3860 0.620556 AGCATCCCAACACCGATCTT 59.379 50.000 0.00 0.00 0.00 2.40
2157 3861 1.837439 AGCATCCCAACACCGATCTTA 59.163 47.619 0.00 0.00 0.00 2.10
2158 3862 1.940613 GCATCCCAACACCGATCTTAC 59.059 52.381 0.00 0.00 0.00 2.34
2159 3863 2.420129 GCATCCCAACACCGATCTTACT 60.420 50.000 0.00 0.00 0.00 2.24
2160 3864 3.181469 GCATCCCAACACCGATCTTACTA 60.181 47.826 0.00 0.00 0.00 1.82
2161 3865 4.682320 GCATCCCAACACCGATCTTACTAA 60.682 45.833 0.00 0.00 0.00 2.24
2162 3866 5.424757 CATCCCAACACCGATCTTACTAAA 58.575 41.667 0.00 0.00 0.00 1.85
2163 3867 4.824289 TCCCAACACCGATCTTACTAAAC 58.176 43.478 0.00 0.00 0.00 2.01
2164 3868 4.283978 TCCCAACACCGATCTTACTAAACA 59.716 41.667 0.00 0.00 0.00 2.83
2165 3869 4.998672 CCCAACACCGATCTTACTAAACAA 59.001 41.667 0.00 0.00 0.00 2.83
2166 3870 5.106830 CCCAACACCGATCTTACTAAACAAC 60.107 44.000 0.00 0.00 0.00 3.32
2167 3871 5.467399 CCAACACCGATCTTACTAAACAACA 59.533 40.000 0.00 0.00 0.00 3.33
2168 3872 6.148811 CCAACACCGATCTTACTAAACAACAT 59.851 38.462 0.00 0.00 0.00 2.71
2169 3873 6.963049 ACACCGATCTTACTAAACAACATC 57.037 37.500 0.00 0.00 0.00 3.06
2170 3874 6.460781 ACACCGATCTTACTAAACAACATCA 58.539 36.000 0.00 0.00 0.00 3.07
2171 3875 7.103641 ACACCGATCTTACTAAACAACATCAT 58.896 34.615 0.00 0.00 0.00 2.45
2172 3876 7.064609 ACACCGATCTTACTAAACAACATCATG 59.935 37.037 0.00 0.00 0.00 3.07
2173 3877 7.064609 CACCGATCTTACTAAACAACATCATGT 59.935 37.037 0.00 0.00 34.24 3.21
2174 3878 7.277981 ACCGATCTTACTAAACAACATCATGTC 59.722 37.037 0.00 0.00 31.81 3.06
2175 3879 7.330318 CGATCTTACTAAACAACATCATGTCG 58.670 38.462 0.00 0.00 31.81 4.35
2176 3880 6.961359 TCTTACTAAACAACATCATGTCGG 57.039 37.500 0.00 0.00 31.81 4.79
2177 3881 6.693466 TCTTACTAAACAACATCATGTCGGA 58.307 36.000 0.00 0.00 31.81 4.55
2178 3882 6.588756 TCTTACTAAACAACATCATGTCGGAC 59.411 38.462 0.00 0.00 31.81 4.79
2179 3883 3.678072 ACTAAACAACATCATGTCGGACG 59.322 43.478 3.34 0.00 31.81 4.79
2180 3884 0.796312 AACAACATCATGTCGGACGC 59.204 50.000 3.34 0.00 31.81 5.19
2181 3885 0.320334 ACAACATCATGTCGGACGCA 60.320 50.000 3.34 0.00 0.00 5.24
2182 3886 0.795698 CAACATCATGTCGGACGCAA 59.204 50.000 3.34 0.00 0.00 4.85
2183 3887 1.196581 CAACATCATGTCGGACGCAAA 59.803 47.619 3.34 0.00 0.00 3.68
2184 3888 1.737838 ACATCATGTCGGACGCAAAT 58.262 45.000 3.34 0.00 0.00 2.32
2185 3889 2.083774 ACATCATGTCGGACGCAAATT 58.916 42.857 3.34 0.00 0.00 1.82
2186 3890 2.487762 ACATCATGTCGGACGCAAATTT 59.512 40.909 3.34 0.00 0.00 1.82
2187 3891 2.610219 TCATGTCGGACGCAAATTTG 57.390 45.000 14.03 14.03 0.00 2.32
2205 3909 2.125106 CGGGTTACTGCAGGAGCC 60.125 66.667 23.17 23.17 41.13 4.70
2206 3910 2.954684 CGGGTTACTGCAGGAGCCA 61.955 63.158 30.64 0.00 41.13 4.75
2207 3911 1.378762 GGGTTACTGCAGGAGCCAA 59.621 57.895 30.64 8.30 41.13 4.52
2208 3912 0.251165 GGGTTACTGCAGGAGCCAAA 60.251 55.000 30.64 0.00 41.13 3.28
2209 3913 0.881796 GGTTACTGCAGGAGCCAAAC 59.118 55.000 25.90 8.08 41.13 2.93
2210 3914 1.604604 GTTACTGCAGGAGCCAAACA 58.395 50.000 19.93 0.00 41.13 2.83
2211 3915 2.162681 GTTACTGCAGGAGCCAAACAT 58.837 47.619 19.93 0.00 41.13 2.71
2212 3916 2.113860 TACTGCAGGAGCCAAACATC 57.886 50.000 19.93 0.00 41.13 3.06
2213 3917 0.403271 ACTGCAGGAGCCAAACATCT 59.597 50.000 19.93 0.00 41.13 2.90
2214 3918 0.809385 CTGCAGGAGCCAAACATCTG 59.191 55.000 5.57 0.00 41.13 2.90
2215 3919 0.111061 TGCAGGAGCCAAACATCTGT 59.889 50.000 0.00 0.00 41.13 3.41
2216 3920 1.251251 GCAGGAGCCAAACATCTGTT 58.749 50.000 0.00 0.00 35.56 3.16
2217 3921 2.224744 TGCAGGAGCCAAACATCTGTTA 60.225 45.455 0.00 0.00 41.13 2.41
2218 3922 2.162408 GCAGGAGCCAAACATCTGTTAC 59.838 50.000 0.00 0.00 33.84 2.50
2219 3923 3.411446 CAGGAGCCAAACATCTGTTACA 58.589 45.455 0.00 0.00 37.25 2.41
2220 3924 3.189287 CAGGAGCCAAACATCTGTTACAC 59.811 47.826 0.00 0.00 37.25 2.90
2221 3925 2.159627 GGAGCCAAACATCTGTTACACG 59.840 50.000 0.00 0.00 37.25 4.49
2222 3926 2.151202 AGCCAAACATCTGTTACACGG 58.849 47.619 0.00 0.00 37.25 4.94
2223 3927 1.877443 GCCAAACATCTGTTACACGGT 59.123 47.619 0.00 0.00 37.25 4.83
2224 3928 3.068560 GCCAAACATCTGTTACACGGTA 58.931 45.455 0.00 0.00 37.25 4.02
2225 3929 3.687698 GCCAAACATCTGTTACACGGTAT 59.312 43.478 0.00 0.00 37.25 2.73
2226 3930 4.436852 GCCAAACATCTGTTACACGGTATG 60.437 45.833 0.00 0.00 37.25 2.39
2227 3931 4.932799 CCAAACATCTGTTACACGGTATGA 59.067 41.667 0.00 0.00 37.25 2.15
2228 3932 5.410132 CCAAACATCTGTTACACGGTATGAA 59.590 40.000 0.00 0.00 37.25 2.57
2229 3933 6.093495 CCAAACATCTGTTACACGGTATGAAT 59.907 38.462 0.00 0.00 37.25 2.57
2230 3934 6.662414 AACATCTGTTACACGGTATGAATG 57.338 37.500 0.00 0.00 36.32 2.67
2231 3935 5.972935 ACATCTGTTACACGGTATGAATGA 58.027 37.500 0.00 0.00 0.00 2.57
2232 3936 6.582636 ACATCTGTTACACGGTATGAATGAT 58.417 36.000 0.00 0.00 0.00 2.45
2233 3937 7.047891 ACATCTGTTACACGGTATGAATGATT 58.952 34.615 0.00 0.00 0.00 2.57
2234 3938 8.201464 ACATCTGTTACACGGTATGAATGATTA 58.799 33.333 0.00 0.00 0.00 1.75
2235 3939 7.997107 TCTGTTACACGGTATGAATGATTAC 57.003 36.000 0.00 0.00 0.00 1.89
2236 3940 7.778083 TCTGTTACACGGTATGAATGATTACT 58.222 34.615 0.00 0.00 0.00 2.24
2237 3941 7.919091 TCTGTTACACGGTATGAATGATTACTC 59.081 37.037 0.00 0.00 0.00 2.59
2238 3942 7.778083 TGTTACACGGTATGAATGATTACTCT 58.222 34.615 0.00 0.00 0.00 3.24
2239 3943 7.919091 TGTTACACGGTATGAATGATTACTCTC 59.081 37.037 0.00 0.00 0.00 3.20
2240 3944 6.465439 ACACGGTATGAATGATTACTCTCA 57.535 37.500 0.00 0.00 0.00 3.27
2241 3945 6.273825 ACACGGTATGAATGATTACTCTCAC 58.726 40.000 0.00 0.00 0.00 3.51
2242 3946 6.127451 ACACGGTATGAATGATTACTCTCACA 60.127 38.462 0.00 0.00 0.00 3.58
2243 3947 6.756542 CACGGTATGAATGATTACTCTCACAA 59.243 38.462 0.00 0.00 0.00 3.33
2244 3948 7.277760 CACGGTATGAATGATTACTCTCACAAA 59.722 37.037 0.00 0.00 0.00 2.83
2245 3949 7.822334 ACGGTATGAATGATTACTCTCACAAAA 59.178 33.333 0.00 0.00 0.00 2.44
2246 3950 8.664798 CGGTATGAATGATTACTCTCACAAAAA 58.335 33.333 0.00 0.00 0.00 1.94
2256 3960 9.704098 GATTACTCTCACAAAAATAATCGTTCC 57.296 33.333 0.00 0.00 0.00 3.62
2257 3961 8.842358 TTACTCTCACAAAAATAATCGTTCCT 57.158 30.769 0.00 0.00 0.00 3.36
2258 3962 9.932207 TTACTCTCACAAAAATAATCGTTCCTA 57.068 29.630 0.00 0.00 0.00 2.94
2262 3966 9.542462 TCTCACAAAAATAATCGTTCCTATAGG 57.458 33.333 13.07 13.07 0.00 2.57
2263 3967 9.326413 CTCACAAAAATAATCGTTCCTATAGGT 57.674 33.333 18.51 0.55 36.34 3.08
2264 3968 9.321562 TCACAAAAATAATCGTTCCTATAGGTC 57.678 33.333 18.51 11.69 36.34 3.85
2265 3969 9.104965 CACAAAAATAATCGTTCCTATAGGTCA 57.895 33.333 18.51 4.07 36.34 4.02
2266 3970 9.326413 ACAAAAATAATCGTTCCTATAGGTCAG 57.674 33.333 18.51 10.54 36.34 3.51
2267 3971 9.326413 CAAAAATAATCGTTCCTATAGGTCAGT 57.674 33.333 18.51 3.44 36.34 3.41
2268 3972 9.901172 AAAAATAATCGTTCCTATAGGTCAGTT 57.099 29.630 18.51 10.50 36.34 3.16
2269 3973 8.888579 AAATAATCGTTCCTATAGGTCAGTTG 57.111 34.615 18.51 4.61 36.34 3.16
2270 3974 5.934402 AATCGTTCCTATAGGTCAGTTGT 57.066 39.130 18.51 0.00 36.34 3.32
2271 3975 8.701908 ATAATCGTTCCTATAGGTCAGTTGTA 57.298 34.615 18.51 5.21 36.34 2.41
2272 3976 7.414222 AATCGTTCCTATAGGTCAGTTGTAA 57.586 36.000 18.51 0.00 36.34 2.41
2273 3977 6.199937 TCGTTCCTATAGGTCAGTTGTAAC 57.800 41.667 18.51 11.30 36.34 2.50
2274 3978 5.711506 TCGTTCCTATAGGTCAGTTGTAACA 59.288 40.000 18.51 2.32 36.34 2.41
2275 3979 5.803967 CGTTCCTATAGGTCAGTTGTAACAC 59.196 44.000 18.51 0.00 36.34 3.32
2276 3980 6.349944 CGTTCCTATAGGTCAGTTGTAACACT 60.350 42.308 18.51 0.00 36.34 3.55
2277 3981 6.770746 TCCTATAGGTCAGTTGTAACACTC 57.229 41.667 18.51 0.00 36.34 3.51
2278 3982 6.491383 TCCTATAGGTCAGTTGTAACACTCT 58.509 40.000 18.51 0.00 36.34 3.24
2279 3983 7.636579 TCCTATAGGTCAGTTGTAACACTCTA 58.363 38.462 18.51 0.00 36.34 2.43
2280 3984 8.111545 TCCTATAGGTCAGTTGTAACACTCTAA 58.888 37.037 18.51 0.00 36.34 2.10
2281 3985 8.915036 CCTATAGGTCAGTTGTAACACTCTAAT 58.085 37.037 10.96 0.00 0.00 1.73
2282 3986 9.737427 CTATAGGTCAGTTGTAACACTCTAATG 57.263 37.037 0.00 0.00 0.00 1.90
2283 3987 5.238583 AGGTCAGTTGTAACACTCTAATGC 58.761 41.667 0.00 0.00 0.00 3.56
2284 3988 4.392138 GGTCAGTTGTAACACTCTAATGCC 59.608 45.833 0.00 0.00 0.00 4.40
2285 3989 5.238583 GTCAGTTGTAACACTCTAATGCCT 58.761 41.667 0.00 0.00 0.00 4.75
2286 3990 5.701290 GTCAGTTGTAACACTCTAATGCCTT 59.299 40.000 0.00 0.00 0.00 4.35
2287 3991 5.932303 TCAGTTGTAACACTCTAATGCCTTC 59.068 40.000 0.00 0.00 0.00 3.46
2288 3992 5.934625 CAGTTGTAACACTCTAATGCCTTCT 59.065 40.000 0.00 0.00 0.00 2.85
2289 3993 6.428159 CAGTTGTAACACTCTAATGCCTTCTT 59.572 38.462 0.00 0.00 0.00 2.52
2290 3994 7.602644 CAGTTGTAACACTCTAATGCCTTCTTA 59.397 37.037 0.00 0.00 0.00 2.10
2291 3995 8.154856 AGTTGTAACACTCTAATGCCTTCTTAA 58.845 33.333 0.00 0.00 0.00 1.85
2292 3996 8.947115 GTTGTAACACTCTAATGCCTTCTTAAT 58.053 33.333 0.00 0.00 0.00 1.40
2293 3997 9.515226 TTGTAACACTCTAATGCCTTCTTAATT 57.485 29.630 0.00 0.00 0.00 1.40
2298 4002 9.125026 ACACTCTAATGCCTTCTTAATTAATGG 57.875 33.333 0.00 3.47 0.00 3.16
2299 4003 8.571336 CACTCTAATGCCTTCTTAATTAATGGG 58.429 37.037 0.00 3.15 0.00 4.00
2300 4004 8.282256 ACTCTAATGCCTTCTTAATTAATGGGT 58.718 33.333 0.00 0.00 0.00 4.51
2301 4005 8.463930 TCTAATGCCTTCTTAATTAATGGGTG 57.536 34.615 0.00 0.00 0.00 4.61
2302 4006 8.278639 TCTAATGCCTTCTTAATTAATGGGTGA 58.721 33.333 0.00 0.00 0.00 4.02
2303 4007 6.966534 ATGCCTTCTTAATTAATGGGTGAG 57.033 37.500 0.00 0.00 0.00 3.51
2304 4008 6.073447 TGCCTTCTTAATTAATGGGTGAGA 57.927 37.500 0.00 0.00 0.00 3.27
2305 4009 5.885912 TGCCTTCTTAATTAATGGGTGAGAC 59.114 40.000 0.00 0.00 0.00 3.36
2306 4010 5.885912 GCCTTCTTAATTAATGGGTGAGACA 59.114 40.000 0.00 0.00 0.00 3.41
2307 4011 6.377146 GCCTTCTTAATTAATGGGTGAGACAA 59.623 38.462 0.00 0.00 0.00 3.18
2308 4012 7.093945 GCCTTCTTAATTAATGGGTGAGACAAA 60.094 37.037 0.00 0.00 0.00 2.83
2309 4013 8.802267 CCTTCTTAATTAATGGGTGAGACAAAA 58.198 33.333 0.00 0.00 0.00 2.44
2350 4054 1.505353 CACGTAGTCGACCTGGTCC 59.495 63.158 20.68 8.06 41.61 4.46
2352 4056 0.538057 ACGTAGTCGACCTGGTCCAA 60.538 55.000 20.68 6.86 29.74 3.53
2453 4157 1.073199 ACCTAACAGCCAGCACACC 59.927 57.895 0.00 0.00 0.00 4.16
2455 4159 0.537143 CCTAACAGCCAGCACACCAA 60.537 55.000 0.00 0.00 0.00 3.67
2499 4203 0.914551 CGTCACGTCGTGATCATTCC 59.085 55.000 29.19 15.02 44.63 3.01
2505 4209 2.103094 ACGTCGTGATCATTCCATCCAT 59.897 45.455 0.00 0.00 0.00 3.41
2542 4246 2.685388 GCAAAGGCCATAGGAAGAGTTC 59.315 50.000 5.01 0.00 0.00 3.01
2543 4247 2.939103 CAAAGGCCATAGGAAGAGTTCG 59.061 50.000 5.01 0.00 0.00 3.95
2545 4249 2.188817 AGGCCATAGGAAGAGTTCGTT 58.811 47.619 5.01 0.00 0.00 3.85
2546 4250 3.371965 AGGCCATAGGAAGAGTTCGTTA 58.628 45.455 5.01 0.00 0.00 3.18
2554 4258 2.168728 GGAAGAGTTCGTTAGGGCATCT 59.831 50.000 0.00 0.00 0.00 2.90
2555 4259 3.369576 GGAAGAGTTCGTTAGGGCATCTT 60.370 47.826 0.00 0.00 0.00 2.40
2556 4260 3.528597 AGAGTTCGTTAGGGCATCTTC 57.471 47.619 0.00 0.00 0.00 2.87
2557 4261 2.832129 AGAGTTCGTTAGGGCATCTTCA 59.168 45.455 0.00 0.00 0.00 3.02
2558 4262 3.260884 AGAGTTCGTTAGGGCATCTTCAA 59.739 43.478 0.00 0.00 0.00 2.69
2559 4263 3.600388 AGTTCGTTAGGGCATCTTCAAG 58.400 45.455 0.00 0.00 0.00 3.02
2560 4264 2.678336 GTTCGTTAGGGCATCTTCAAGG 59.322 50.000 0.00 0.00 0.00 3.61
2561 4265 1.017387 CGTTAGGGCATCTTCAAGGC 58.983 55.000 0.00 0.00 0.00 4.35
2562 4266 1.678728 CGTTAGGGCATCTTCAAGGCA 60.679 52.381 0.00 0.00 0.00 4.75
2563 4267 2.019984 GTTAGGGCATCTTCAAGGCAG 58.980 52.381 0.00 0.00 0.00 4.85
2564 4268 1.583556 TAGGGCATCTTCAAGGCAGA 58.416 50.000 0.00 0.00 0.00 4.26
2565 4269 0.924823 AGGGCATCTTCAAGGCAGAT 59.075 50.000 0.00 0.00 0.00 2.90
2566 4270 1.133853 AGGGCATCTTCAAGGCAGATC 60.134 52.381 0.00 0.00 0.00 2.75
2567 4271 1.133853 GGGCATCTTCAAGGCAGATCT 60.134 52.381 0.00 0.00 0.00 2.75
2568 4272 1.948145 GGCATCTTCAAGGCAGATCTG 59.052 52.381 18.84 18.84 0.00 2.90
2569 4273 2.641305 GCATCTTCAAGGCAGATCTGT 58.359 47.619 23.38 2.03 0.00 3.41
2570 4274 3.432749 GGCATCTTCAAGGCAGATCTGTA 60.433 47.826 23.38 2.58 0.00 2.74
2571 4275 4.194640 GCATCTTCAAGGCAGATCTGTAA 58.805 43.478 23.38 9.71 0.00 2.41
2572 4276 4.637534 GCATCTTCAAGGCAGATCTGTAAA 59.362 41.667 23.38 10.02 0.00 2.01
2573 4277 5.448360 GCATCTTCAAGGCAGATCTGTAAAC 60.448 44.000 23.38 11.72 0.00 2.01
2574 4278 4.579869 TCTTCAAGGCAGATCTGTAAACC 58.420 43.478 23.38 15.60 0.00 3.27
2575 4279 4.041567 TCTTCAAGGCAGATCTGTAAACCA 59.958 41.667 23.38 4.37 0.00 3.67
2576 4280 4.574674 TCAAGGCAGATCTGTAAACCAT 57.425 40.909 23.38 6.79 0.00 3.55
2577 4281 4.517285 TCAAGGCAGATCTGTAAACCATC 58.483 43.478 23.38 4.50 0.00 3.51
2578 4282 3.567478 AGGCAGATCTGTAAACCATCC 57.433 47.619 23.38 13.18 0.00 3.51
2579 4283 2.158900 AGGCAGATCTGTAAACCATCCG 60.159 50.000 23.38 0.00 0.00 4.18
2580 4284 1.599542 GCAGATCTGTAAACCATCCGC 59.400 52.381 23.38 1.03 0.00 5.54
2581 4285 2.905075 CAGATCTGTAAACCATCCGCA 58.095 47.619 14.95 0.00 0.00 5.69
2582 4286 3.470709 CAGATCTGTAAACCATCCGCAT 58.529 45.455 14.95 0.00 0.00 4.73
2583 4287 3.879295 CAGATCTGTAAACCATCCGCATT 59.121 43.478 14.95 0.00 0.00 3.56
2584 4288 4.024556 CAGATCTGTAAACCATCCGCATTC 60.025 45.833 14.95 0.00 0.00 2.67
2585 4289 3.342377 TCTGTAAACCATCCGCATTCA 57.658 42.857 0.00 0.00 0.00 2.57
2586 4290 3.884895 TCTGTAAACCATCCGCATTCAT 58.115 40.909 0.00 0.00 0.00 2.57
2587 4291 3.627123 TCTGTAAACCATCCGCATTCATG 59.373 43.478 0.00 0.00 0.00 3.07
2607 4311 4.612412 GACCGCGTTGTCCCACCA 62.612 66.667 4.92 0.00 0.00 4.17
2608 4312 3.894547 GACCGCGTTGTCCCACCAT 62.895 63.158 4.92 0.00 0.00 3.55
2609 4313 2.266372 CCGCGTTGTCCCACCATA 59.734 61.111 4.92 0.00 0.00 2.74
2610 4314 1.376166 CCGCGTTGTCCCACCATAA 60.376 57.895 4.92 0.00 0.00 1.90
2611 4315 0.956410 CCGCGTTGTCCCACCATAAA 60.956 55.000 4.92 0.00 0.00 1.40
2612 4316 0.875728 CGCGTTGTCCCACCATAAAA 59.124 50.000 0.00 0.00 0.00 1.52
2613 4317 1.135803 CGCGTTGTCCCACCATAAAAG 60.136 52.381 0.00 0.00 0.00 2.27
2614 4318 1.883926 GCGTTGTCCCACCATAAAAGT 59.116 47.619 0.00 0.00 0.00 2.66
2615 4319 2.095415 GCGTTGTCCCACCATAAAAGTC 60.095 50.000 0.00 0.00 0.00 3.01
2616 4320 3.142951 CGTTGTCCCACCATAAAAGTCA 58.857 45.455 0.00 0.00 0.00 3.41
2617 4321 3.756434 CGTTGTCCCACCATAAAAGTCAT 59.244 43.478 0.00 0.00 0.00 3.06
2618 4322 4.217550 CGTTGTCCCACCATAAAAGTCATT 59.782 41.667 0.00 0.00 0.00 2.57
2619 4323 5.619086 CGTTGTCCCACCATAAAAGTCATTC 60.619 44.000 0.00 0.00 0.00 2.67
2620 4324 4.991776 TGTCCCACCATAAAAGTCATTCA 58.008 39.130 0.00 0.00 0.00 2.57
2621 4325 5.389520 TGTCCCACCATAAAAGTCATTCAA 58.610 37.500 0.00 0.00 0.00 2.69
2622 4326 5.242838 TGTCCCACCATAAAAGTCATTCAAC 59.757 40.000 0.00 0.00 0.00 3.18
2623 4327 5.242838 GTCCCACCATAAAAGTCATTCAACA 59.757 40.000 0.00 0.00 0.00 3.33
2624 4328 5.242838 TCCCACCATAAAAGTCATTCAACAC 59.757 40.000 0.00 0.00 0.00 3.32
2625 4329 5.153513 CCACCATAAAAGTCATTCAACACG 58.846 41.667 0.00 0.00 0.00 4.49
2626 4330 5.049060 CCACCATAAAAGTCATTCAACACGA 60.049 40.000 0.00 0.00 0.00 4.35
2627 4331 6.079763 CACCATAAAAGTCATTCAACACGAG 58.920 40.000 0.00 0.00 0.00 4.18
2628 4332 5.763204 ACCATAAAAGTCATTCAACACGAGT 59.237 36.000 0.00 0.00 0.00 4.18
2629 4333 6.262273 ACCATAAAAGTCATTCAACACGAGTT 59.738 34.615 0.00 0.00 38.88 3.01
2630 4334 7.138736 CCATAAAAGTCATTCAACACGAGTTT 58.861 34.615 0.00 0.00 35.28 2.66
2631 4335 7.113404 CCATAAAAGTCATTCAACACGAGTTTG 59.887 37.037 0.00 0.00 35.28 2.93
2632 4336 5.560966 AAAGTCATTCAACACGAGTTTGT 57.439 34.783 0.00 0.00 35.28 2.83
2633 4337 6.671614 AAAGTCATTCAACACGAGTTTGTA 57.328 33.333 0.00 0.00 35.28 2.41
2634 4338 6.861065 AAGTCATTCAACACGAGTTTGTAT 57.139 33.333 0.00 0.00 35.28 2.29
2635 4339 6.467723 AGTCATTCAACACGAGTTTGTATC 57.532 37.500 0.00 0.00 35.28 2.24
2636 4340 5.118664 AGTCATTCAACACGAGTTTGTATCG 59.881 40.000 0.00 0.00 45.54 2.92
2637 4341 4.387559 TCATTCAACACGAGTTTGTATCGG 59.612 41.667 0.00 0.00 44.36 4.18
2638 4342 3.374220 TCAACACGAGTTTGTATCGGT 57.626 42.857 0.00 0.00 44.36 4.69
2639 4343 3.719924 TCAACACGAGTTTGTATCGGTT 58.280 40.909 0.00 0.00 44.36 4.44
2640 4344 4.121317 TCAACACGAGTTTGTATCGGTTT 58.879 39.130 0.00 0.00 44.36 3.27
2641 4345 5.288015 TCAACACGAGTTTGTATCGGTTTA 58.712 37.500 0.00 0.00 44.36 2.01
2642 4346 5.175491 TCAACACGAGTTTGTATCGGTTTAC 59.825 40.000 0.00 0.00 44.36 2.01
2643 4347 4.619973 ACACGAGTTTGTATCGGTTTACA 58.380 39.130 0.00 0.00 44.36 2.41
2644 4348 4.682860 ACACGAGTTTGTATCGGTTTACAG 59.317 41.667 0.00 0.00 44.36 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 203 7.094508 TGCAAATCACAAACAGTTTTAGAGA 57.905 32.000 0.00 0.00 0.00 3.10
182 204 7.754069 TTGCAAATCACAAACAGTTTTAGAG 57.246 32.000 0.00 0.00 0.00 2.43
303 327 9.609950 CAACAATTTTTGAAATTCACAAACAGT 57.390 25.926 9.17 8.21 37.05 3.55
304 328 8.577110 GCAACAATTTTTGAAATTCACAAACAG 58.423 29.630 9.17 7.68 37.05 3.16
329 353 7.647228 ACATATTTTTGGAAATTGTTTGGTGC 58.353 30.769 0.00 0.00 36.82 5.01
344 368 9.672086 TTTCTAGGTTTGACGAACATATTTTTG 57.328 29.630 7.86 0.00 40.13 2.44
350 374 9.878667 TCAATATTTCTAGGTTTGACGAACATA 57.121 29.630 7.86 3.99 40.13 2.29
403 427 9.278734 GCAAACATTTTTAAAAATTTCCGAACA 57.721 25.926 20.92 0.00 36.52 3.18
404 428 9.278734 TGCAAACATTTTTAAAAATTTCCGAAC 57.721 25.926 20.92 9.93 36.52 3.95
406 430 9.840427 TTTGCAAACATTTTTAAAAATTTCCGA 57.160 22.222 20.92 5.28 36.52 4.55
555 673 5.763698 CCTAGATACACGACCACTCTCATTA 59.236 44.000 0.00 0.00 0.00 1.90
568 686 6.387041 TTTCCTACATCACCTAGATACACG 57.613 41.667 0.00 0.00 34.43 4.49
588 706 4.262164 GGCCATGACCATGACCATATTTTC 60.262 45.833 11.28 0.00 40.54 2.29
604 722 2.450115 TCATAATCCCCAATGGCCATGA 59.550 45.455 21.63 12.80 0.00 3.07
608 726 6.625532 AAAATATCATAATCCCCAATGGCC 57.374 37.500 0.00 0.00 0.00 5.36
609 727 7.910584 AGAAAAATATCATAATCCCCAATGGC 58.089 34.615 0.00 0.00 0.00 4.40
617 735 9.067986 ACGGGAGAAAGAAAAATATCATAATCC 57.932 33.333 0.00 0.00 0.00 3.01
679 805 4.100808 TGCAGGTGAGCCTTTTACATTTTT 59.899 37.500 0.00 0.00 44.18 1.94
681 807 3.005791 GTGCAGGTGAGCCTTTTACATTT 59.994 43.478 0.00 0.00 44.18 2.32
682 808 2.558359 GTGCAGGTGAGCCTTTTACATT 59.442 45.455 0.00 0.00 44.18 2.71
683 809 2.162681 GTGCAGGTGAGCCTTTTACAT 58.837 47.619 0.00 0.00 44.18 2.29
684 810 1.133945 TGTGCAGGTGAGCCTTTTACA 60.134 47.619 0.00 0.00 44.18 2.41
905 1071 4.484236 CTTCAGTGAGTGAGTGAGTGATC 58.516 47.826 0.00 0.00 35.35 2.92
906 1072 3.257873 CCTTCAGTGAGTGAGTGAGTGAT 59.742 47.826 0.00 0.00 35.35 3.06
985 1174 0.825425 CTCATGGCTCCTCTCGGCTA 60.825 60.000 0.00 0.00 0.00 3.93
989 1178 0.530211 CTTGCTCATGGCTCCTCTCG 60.530 60.000 7.54 0.00 42.39 4.04
993 1182 1.203441 TGTCCTTGCTCATGGCTCCT 61.203 55.000 7.54 0.00 42.39 3.69
1099 1297 1.384989 CGGAGCACCAGGTAGACGAT 61.385 60.000 0.00 0.00 35.59 3.73
1684 1883 8.928733 CAGAAAATTAAACCGCTACTTAGTACA 58.071 33.333 0.00 0.00 0.00 2.90
1688 1887 7.073342 AGCAGAAAATTAAACCGCTACTTAG 57.927 36.000 0.00 0.00 0.00 2.18
1689 1888 7.443259 AAGCAGAAAATTAAACCGCTACTTA 57.557 32.000 0.00 0.00 0.00 2.24
1690 1889 5.959618 AGCAGAAAATTAAACCGCTACTT 57.040 34.783 0.00 0.00 0.00 2.24
1691 1890 5.959618 AAGCAGAAAATTAAACCGCTACT 57.040 34.783 0.00 0.00 0.00 2.57
1692 1891 7.248437 ACATAAGCAGAAAATTAAACCGCTAC 58.752 34.615 0.00 0.00 0.00 3.58
1693 1892 7.335924 AGACATAAGCAGAAAATTAAACCGCTA 59.664 33.333 0.00 0.00 0.00 4.26
1694 1893 6.151144 AGACATAAGCAGAAAATTAAACCGCT 59.849 34.615 0.00 0.00 0.00 5.52
1758 1970 9.941991 CAAAGAAATACAAATTGCAATCGTTAG 57.058 29.630 13.38 3.91 0.00 2.34
1763 1975 6.128580 ACGGCAAAGAAATACAAATTGCAATC 60.129 34.615 13.38 0.00 46.12 2.67
1820 2034 3.617263 CGGAAGAACTTATATATGCCCGC 59.383 47.826 0.00 0.00 0.00 6.13
1846 2060 9.835389 ATATGCTGCACCATTTACATTTTAAAT 57.165 25.926 3.57 0.00 0.00 1.40
1895 2109 4.732285 ACATGAGACATGACACGAAAAC 57.268 40.909 16.86 0.00 0.00 2.43
1897 2111 4.384547 CGTTACATGAGACATGACACGAAA 59.615 41.667 22.39 7.12 33.28 3.46
1901 2115 4.234574 TCACGTTACATGAGACATGACAC 58.765 43.478 16.86 11.45 0.00 3.67
1903 2117 4.733850 TCTCACGTTACATGAGACATGAC 58.266 43.478 7.06 0.00 46.01 3.06
1975 3669 8.565416 GCATGGATATATCATGATGGTATGTTG 58.435 37.037 18.72 9.41 43.25 3.33
1976 3670 8.276477 TGCATGGATATATCATGATGGTATGTT 58.724 33.333 18.72 0.00 43.25 2.71
1977 3671 7.808218 TGCATGGATATATCATGATGGTATGT 58.192 34.615 18.72 1.42 43.25 2.29
1981 3675 5.995897 CGATGCATGGATATATCATGATGGT 59.004 40.000 18.72 9.30 43.25 3.55
2026 3720 5.591067 ACAGTTTAAACCATTCCGAAGAACA 59.409 36.000 14.72 0.00 33.97 3.18
2034 3728 7.816995 TGCATCATTTACAGTTTAAACCATTCC 59.183 33.333 14.72 0.00 0.00 3.01
2078 3772 4.607557 CGCGGACAAACTACAAAGTAGTTG 60.608 45.833 19.71 15.92 43.43 3.16
2095 3799 1.216941 TTTTCTCGTTCCACGCGGAC 61.217 55.000 12.47 2.36 42.67 4.79
2104 3808 4.254402 AGACCCTAGTGTTTTCTCGTTC 57.746 45.455 0.00 0.00 0.00 3.95
2108 3812 4.618920 TGGAAGACCCTAGTGTTTTCTC 57.381 45.455 8.21 1.12 31.82 2.87
2109 3813 4.715713 GTTGGAAGACCCTAGTGTTTTCT 58.284 43.478 8.21 0.00 31.82 2.52
2110 3814 3.497262 CGTTGGAAGACCCTAGTGTTTTC 59.503 47.826 0.68 0.68 35.38 2.29
2111 3815 3.473625 CGTTGGAAGACCCTAGTGTTTT 58.526 45.455 0.00 0.00 35.38 2.43
2133 3837 0.958091 TCGGTGTTGGGATGCTTTTG 59.042 50.000 0.00 0.00 0.00 2.44
2135 3839 1.004745 AGATCGGTGTTGGGATGCTTT 59.995 47.619 0.00 0.00 0.00 3.51
2136 3840 0.620556 AGATCGGTGTTGGGATGCTT 59.379 50.000 0.00 0.00 0.00 3.91
2137 3841 0.620556 AAGATCGGTGTTGGGATGCT 59.379 50.000 0.00 0.00 0.00 3.79
2138 3842 1.940613 GTAAGATCGGTGTTGGGATGC 59.059 52.381 0.00 0.00 0.00 3.91
2139 3843 3.543680 AGTAAGATCGGTGTTGGGATG 57.456 47.619 0.00 0.00 0.00 3.51
2140 3844 5.046159 TGTTTAGTAAGATCGGTGTTGGGAT 60.046 40.000 0.00 0.00 0.00 3.85
2141 3845 4.283978 TGTTTAGTAAGATCGGTGTTGGGA 59.716 41.667 0.00 0.00 0.00 4.37
2142 3846 4.571919 TGTTTAGTAAGATCGGTGTTGGG 58.428 43.478 0.00 0.00 0.00 4.12
2143 3847 5.467399 TGTTGTTTAGTAAGATCGGTGTTGG 59.533 40.000 0.00 0.00 0.00 3.77
2144 3848 6.533819 TGTTGTTTAGTAAGATCGGTGTTG 57.466 37.500 0.00 0.00 0.00 3.33
2145 3849 6.932400 TGATGTTGTTTAGTAAGATCGGTGTT 59.068 34.615 0.00 0.00 32.29 3.32
2146 3850 6.460781 TGATGTTGTTTAGTAAGATCGGTGT 58.539 36.000 0.00 0.00 32.29 4.16
2147 3851 6.961359 TGATGTTGTTTAGTAAGATCGGTG 57.039 37.500 0.00 0.00 32.29 4.94
2148 3852 7.103641 ACATGATGTTGTTTAGTAAGATCGGT 58.896 34.615 0.00 0.00 32.29 4.69
2149 3853 7.515215 CGACATGATGTTGTTTAGTAAGATCGG 60.515 40.741 0.00 0.00 32.29 4.18
2150 3854 7.330318 CGACATGATGTTGTTTAGTAAGATCG 58.670 38.462 0.00 0.00 32.29 3.69
2151 3855 7.491372 TCCGACATGATGTTGTTTAGTAAGATC 59.509 37.037 11.62 0.00 29.69 2.75
2152 3856 7.277981 GTCCGACATGATGTTGTTTAGTAAGAT 59.722 37.037 11.62 0.00 29.69 2.40
2153 3857 6.588756 GTCCGACATGATGTTGTTTAGTAAGA 59.411 38.462 11.62 0.00 29.69 2.10
2154 3858 6.453791 CGTCCGACATGATGTTGTTTAGTAAG 60.454 42.308 11.62 0.00 29.69 2.34
2155 3859 5.346551 CGTCCGACATGATGTTGTTTAGTAA 59.653 40.000 11.62 0.00 29.69 2.24
2156 3860 4.860352 CGTCCGACATGATGTTGTTTAGTA 59.140 41.667 11.62 0.00 29.69 1.82
2157 3861 3.678072 CGTCCGACATGATGTTGTTTAGT 59.322 43.478 11.62 0.00 29.69 2.24
2158 3862 3.483574 GCGTCCGACATGATGTTGTTTAG 60.484 47.826 11.62 2.18 29.69 1.85
2159 3863 2.413796 GCGTCCGACATGATGTTGTTTA 59.586 45.455 11.62 0.00 29.69 2.01
2160 3864 1.196808 GCGTCCGACATGATGTTGTTT 59.803 47.619 11.62 0.00 29.69 2.83
2161 3865 0.796312 GCGTCCGACATGATGTTGTT 59.204 50.000 11.62 0.00 29.69 2.83
2162 3866 0.320334 TGCGTCCGACATGATGTTGT 60.320 50.000 11.62 0.00 29.69 3.32
2163 3867 0.795698 TTGCGTCCGACATGATGTTG 59.204 50.000 5.82 5.82 0.00 3.33
2164 3868 1.518325 TTTGCGTCCGACATGATGTT 58.482 45.000 0.00 0.00 0.00 2.71
2165 3869 1.737838 ATTTGCGTCCGACATGATGT 58.262 45.000 0.00 0.00 0.00 3.06
2166 3870 2.830772 AATTTGCGTCCGACATGATG 57.169 45.000 0.00 0.00 0.00 3.07
2167 3871 2.731968 GCAAATTTGCGTCCGACATGAT 60.732 45.455 26.15 0.00 45.11 2.45
2168 3872 1.400888 GCAAATTTGCGTCCGACATGA 60.401 47.619 26.15 0.00 45.11 3.07
2169 3873 0.984109 GCAAATTTGCGTCCGACATG 59.016 50.000 26.15 0.00 45.11 3.21
2170 3874 3.399879 GCAAATTTGCGTCCGACAT 57.600 47.368 26.15 0.00 45.11 3.06
2171 3875 4.933483 GCAAATTTGCGTCCGACA 57.067 50.000 26.15 0.00 45.11 4.35
2180 3884 2.327568 CTGCAGTAACCCGCAAATTTG 58.672 47.619 14.03 14.03 37.76 2.32
2181 3885 1.272212 CCTGCAGTAACCCGCAAATTT 59.728 47.619 13.81 0.00 37.76 1.82
2182 3886 0.887933 CCTGCAGTAACCCGCAAATT 59.112 50.000 13.81 0.00 37.76 1.82
2183 3887 0.037590 TCCTGCAGTAACCCGCAAAT 59.962 50.000 13.81 0.00 37.76 2.32
2184 3888 0.605319 CTCCTGCAGTAACCCGCAAA 60.605 55.000 13.81 0.00 37.76 3.68
2185 3889 1.003839 CTCCTGCAGTAACCCGCAA 60.004 57.895 13.81 0.00 37.76 4.85
2186 3890 2.662596 CTCCTGCAGTAACCCGCA 59.337 61.111 13.81 0.00 36.52 5.69
2187 3891 2.820037 GCTCCTGCAGTAACCCGC 60.820 66.667 13.81 1.87 39.41 6.13
2188 3892 2.125106 GGCTCCTGCAGTAACCCG 60.125 66.667 13.81 0.00 41.91 5.28
2189 3893 0.251165 TTTGGCTCCTGCAGTAACCC 60.251 55.000 13.81 7.89 41.91 4.11
2190 3894 0.881796 GTTTGGCTCCTGCAGTAACC 59.118 55.000 13.81 10.88 41.91 2.85
2191 3895 1.604604 TGTTTGGCTCCTGCAGTAAC 58.395 50.000 13.81 7.40 41.91 2.50
2192 3896 2.040278 AGATGTTTGGCTCCTGCAGTAA 59.960 45.455 13.81 0.00 41.91 2.24
2193 3897 1.630369 AGATGTTTGGCTCCTGCAGTA 59.370 47.619 13.81 0.00 41.91 2.74
2194 3898 0.403271 AGATGTTTGGCTCCTGCAGT 59.597 50.000 13.81 0.00 41.91 4.40
2195 3899 0.809385 CAGATGTTTGGCTCCTGCAG 59.191 55.000 6.78 6.78 41.91 4.41
2196 3900 0.111061 ACAGATGTTTGGCTCCTGCA 59.889 50.000 0.00 0.00 41.91 4.41
2197 3901 1.251251 AACAGATGTTTGGCTCCTGC 58.749 50.000 0.00 0.00 33.93 4.85
2198 3902 3.189287 GTGTAACAGATGTTTGGCTCCTG 59.811 47.826 3.14 0.00 39.31 3.86
2199 3903 3.412386 GTGTAACAGATGTTTGGCTCCT 58.588 45.455 3.14 0.00 39.31 3.69
2200 3904 2.159627 CGTGTAACAGATGTTTGGCTCC 59.840 50.000 3.14 0.00 39.31 4.70
2201 3905 2.159627 CCGTGTAACAGATGTTTGGCTC 59.840 50.000 3.14 0.00 39.31 4.70
2202 3906 2.151202 CCGTGTAACAGATGTTTGGCT 58.849 47.619 3.14 0.00 39.31 4.75
2203 3907 1.877443 ACCGTGTAACAGATGTTTGGC 59.123 47.619 3.14 0.00 39.31 4.52
2204 3908 4.932799 TCATACCGTGTAACAGATGTTTGG 59.067 41.667 3.14 4.38 39.31 3.28
2205 3909 6.474819 TTCATACCGTGTAACAGATGTTTG 57.525 37.500 3.14 0.00 39.31 2.93
2206 3910 6.876789 TCATTCATACCGTGTAACAGATGTTT 59.123 34.615 3.14 0.00 39.31 2.83
2207 3911 6.403049 TCATTCATACCGTGTAACAGATGTT 58.597 36.000 3.37 3.37 41.73 2.71
2208 3912 5.972935 TCATTCATACCGTGTAACAGATGT 58.027 37.500 0.00 0.00 35.74 3.06
2209 3913 7.482654 AATCATTCATACCGTGTAACAGATG 57.517 36.000 0.00 0.00 35.74 2.90
2210 3914 8.421784 AGTAATCATTCATACCGTGTAACAGAT 58.578 33.333 0.00 0.00 35.74 2.90
2211 3915 7.778083 AGTAATCATTCATACCGTGTAACAGA 58.222 34.615 0.00 0.00 35.74 3.41
2212 3916 7.921214 AGAGTAATCATTCATACCGTGTAACAG 59.079 37.037 0.00 0.00 35.74 3.16
2213 3917 7.778083 AGAGTAATCATTCATACCGTGTAACA 58.222 34.615 0.00 0.00 35.74 2.41
2214 3918 7.919091 TGAGAGTAATCATTCATACCGTGTAAC 59.081 37.037 0.00 0.00 0.00 2.50
2215 3919 7.919091 GTGAGAGTAATCATTCATACCGTGTAA 59.081 37.037 0.00 0.00 0.00 2.41
2216 3920 7.067737 TGTGAGAGTAATCATTCATACCGTGTA 59.932 37.037 0.00 0.00 0.00 2.90
2217 3921 6.127451 TGTGAGAGTAATCATTCATACCGTGT 60.127 38.462 0.00 0.00 0.00 4.49
2218 3922 6.273071 TGTGAGAGTAATCATTCATACCGTG 58.727 40.000 0.00 0.00 0.00 4.94
2219 3923 6.465439 TGTGAGAGTAATCATTCATACCGT 57.535 37.500 0.00 0.00 0.00 4.83
2220 3924 7.770801 TTTGTGAGAGTAATCATTCATACCG 57.229 36.000 0.00 0.00 0.00 4.02
2230 3934 9.704098 GGAACGATTATTTTTGTGAGAGTAATC 57.296 33.333 0.00 0.00 0.00 1.75
2231 3935 9.449719 AGGAACGATTATTTTTGTGAGAGTAAT 57.550 29.630 0.00 0.00 0.00 1.89
2232 3936 8.842358 AGGAACGATTATTTTTGTGAGAGTAA 57.158 30.769 0.00 0.00 0.00 2.24
2236 3940 9.542462 CCTATAGGAACGATTATTTTTGTGAGA 57.458 33.333 14.11 0.00 37.39 3.27
2237 3941 9.326413 ACCTATAGGAACGATTATTTTTGTGAG 57.674 33.333 26.01 0.00 38.94 3.51
2238 3942 9.321562 GACCTATAGGAACGATTATTTTTGTGA 57.678 33.333 26.01 0.00 38.94 3.58
2239 3943 9.104965 TGACCTATAGGAACGATTATTTTTGTG 57.895 33.333 26.01 0.00 38.94 3.33
2240 3944 9.326413 CTGACCTATAGGAACGATTATTTTTGT 57.674 33.333 26.01 0.00 38.94 2.83
2241 3945 9.326413 ACTGACCTATAGGAACGATTATTTTTG 57.674 33.333 26.01 0.12 38.94 2.44
2242 3946 9.901172 AACTGACCTATAGGAACGATTATTTTT 57.099 29.630 26.01 0.00 38.94 1.94
2243 3947 9.326413 CAACTGACCTATAGGAACGATTATTTT 57.674 33.333 26.01 0.00 38.94 1.82
2244 3948 8.483758 ACAACTGACCTATAGGAACGATTATTT 58.516 33.333 26.01 0.00 38.94 1.40
2245 3949 8.019656 ACAACTGACCTATAGGAACGATTATT 57.980 34.615 26.01 0.00 38.94 1.40
2246 3950 7.598759 ACAACTGACCTATAGGAACGATTAT 57.401 36.000 26.01 0.00 38.94 1.28
2247 3951 8.408601 GTTACAACTGACCTATAGGAACGATTA 58.591 37.037 26.01 5.36 38.94 1.75
2248 3952 5.934402 ACAACTGACCTATAGGAACGATT 57.066 39.130 26.01 12.71 38.94 3.34
2249 3953 6.379133 TGTTACAACTGACCTATAGGAACGAT 59.621 38.462 26.01 1.65 38.94 3.73
2250 3954 5.711506 TGTTACAACTGACCTATAGGAACGA 59.288 40.000 26.01 4.88 38.94 3.85
2251 3955 5.803967 GTGTTACAACTGACCTATAGGAACG 59.196 44.000 26.01 13.83 38.94 3.95
2252 3956 6.932947 AGTGTTACAACTGACCTATAGGAAC 58.067 40.000 26.01 17.60 38.94 3.62
2253 3957 6.952358 AGAGTGTTACAACTGACCTATAGGAA 59.048 38.462 26.01 11.77 38.94 3.36
2254 3958 6.491383 AGAGTGTTACAACTGACCTATAGGA 58.509 40.000 26.01 2.65 38.94 2.94
2255 3959 6.777213 AGAGTGTTACAACTGACCTATAGG 57.223 41.667 17.73 17.73 42.17 2.57
2256 3960 9.737427 CATTAGAGTGTTACAACTGACCTATAG 57.263 37.037 0.00 0.00 0.00 1.31
2257 3961 8.195436 GCATTAGAGTGTTACAACTGACCTATA 58.805 37.037 0.00 0.00 0.00 1.31
2258 3962 7.042335 GCATTAGAGTGTTACAACTGACCTAT 58.958 38.462 0.00 0.00 0.00 2.57
2259 3963 6.395629 GCATTAGAGTGTTACAACTGACCTA 58.604 40.000 0.00 0.00 0.00 3.08
2260 3964 5.238583 GCATTAGAGTGTTACAACTGACCT 58.761 41.667 0.00 0.00 0.00 3.85
2261 3965 4.392138 GGCATTAGAGTGTTACAACTGACC 59.608 45.833 0.00 0.00 0.00 4.02
2262 3966 5.238583 AGGCATTAGAGTGTTACAACTGAC 58.761 41.667 0.00 0.00 0.00 3.51
2263 3967 5.483685 AGGCATTAGAGTGTTACAACTGA 57.516 39.130 0.00 0.00 0.00 3.41
2264 3968 5.934625 AGAAGGCATTAGAGTGTTACAACTG 59.065 40.000 0.00 0.00 0.00 3.16
2265 3969 6.115448 AGAAGGCATTAGAGTGTTACAACT 57.885 37.500 0.00 0.00 0.00 3.16
2266 3970 6.803154 AAGAAGGCATTAGAGTGTTACAAC 57.197 37.500 0.00 0.00 0.00 3.32
2267 3971 9.515226 AATTAAGAAGGCATTAGAGTGTTACAA 57.485 29.630 0.00 0.00 0.00 2.41
2272 3976 9.125026 CCATTAATTAAGAAGGCATTAGAGTGT 57.875 33.333 3.94 0.00 0.00 3.55
2273 3977 8.571336 CCCATTAATTAAGAAGGCATTAGAGTG 58.429 37.037 3.94 0.00 0.00 3.51
2274 3978 8.282256 ACCCATTAATTAAGAAGGCATTAGAGT 58.718 33.333 3.94 0.00 0.00 3.24
2275 3979 8.571336 CACCCATTAATTAAGAAGGCATTAGAG 58.429 37.037 3.94 0.00 0.00 2.43
2276 3980 8.278639 TCACCCATTAATTAAGAAGGCATTAGA 58.721 33.333 3.94 0.00 0.00 2.10
2277 3981 8.463930 TCACCCATTAATTAAGAAGGCATTAG 57.536 34.615 3.94 0.00 0.00 1.73
2278 3982 8.278639 TCTCACCCATTAATTAAGAAGGCATTA 58.721 33.333 3.94 0.00 0.00 1.90
2279 3983 7.068716 GTCTCACCCATTAATTAAGAAGGCATT 59.931 37.037 3.94 0.00 0.00 3.56
2280 3984 6.547510 GTCTCACCCATTAATTAAGAAGGCAT 59.452 38.462 3.94 0.00 0.00 4.40
2281 3985 5.885912 GTCTCACCCATTAATTAAGAAGGCA 59.114 40.000 3.94 0.00 0.00 4.75
2282 3986 5.885912 TGTCTCACCCATTAATTAAGAAGGC 59.114 40.000 3.94 0.00 0.00 4.35
2283 3987 7.938140 TTGTCTCACCCATTAATTAAGAAGG 57.062 36.000 3.94 6.71 0.00 3.46
2319 4023 5.967088 GTCGACTACGTGGAAAAACATTTTT 59.033 36.000 8.70 2.00 40.44 1.94
2320 4024 5.504392 GTCGACTACGTGGAAAAACATTTT 58.496 37.500 8.70 0.00 40.69 1.82
2321 4025 4.024641 GGTCGACTACGTGGAAAAACATTT 60.025 41.667 16.46 0.00 40.69 2.32
2322 4026 3.495753 GGTCGACTACGTGGAAAAACATT 59.504 43.478 16.46 0.00 40.69 2.71
2323 4027 3.062042 GGTCGACTACGTGGAAAAACAT 58.938 45.455 16.46 0.00 40.69 2.71
2324 4028 2.101249 AGGTCGACTACGTGGAAAAACA 59.899 45.455 16.46 0.00 40.69 2.83
2325 4029 2.473984 CAGGTCGACTACGTGGAAAAAC 59.526 50.000 16.46 0.00 39.73 2.43
2326 4030 2.746269 CAGGTCGACTACGTGGAAAAA 58.254 47.619 16.46 0.00 39.73 1.94
2327 4031 2.427232 CAGGTCGACTACGTGGAAAA 57.573 50.000 16.46 0.00 39.73 2.29
2336 4040 2.376109 GATCTTGGACCAGGTCGACTA 58.624 52.381 16.46 0.58 32.65 2.59
2337 4041 1.187087 GATCTTGGACCAGGTCGACT 58.813 55.000 16.46 0.00 32.65 4.18
2368 4072 3.066760 TGATCTATCGGCTGTGTGTAGTG 59.933 47.826 0.00 0.00 0.00 2.74
2369 4073 3.288092 TGATCTATCGGCTGTGTGTAGT 58.712 45.455 0.00 0.00 0.00 2.73
2370 4074 3.990318 TGATCTATCGGCTGTGTGTAG 57.010 47.619 0.00 0.00 0.00 2.74
2371 4075 4.501400 CCATTGATCTATCGGCTGTGTGTA 60.501 45.833 0.00 0.00 0.00 2.90
2372 4076 3.461061 CATTGATCTATCGGCTGTGTGT 58.539 45.455 0.00 0.00 0.00 3.72
2453 4157 2.416431 GCTGCCTAATGCCACTTTCTTG 60.416 50.000 0.00 0.00 40.16 3.02
2455 4159 1.467920 GCTGCCTAATGCCACTTTCT 58.532 50.000 0.00 0.00 40.16 2.52
2475 4179 3.909258 ATCACGACGTGACGGCACC 62.909 63.158 31.34 0.84 45.65 5.01
2499 4203 2.945008 AGTACGTTGCATGGAATGGATG 59.055 45.455 21.42 0.00 46.71 3.51
2542 4246 1.017387 GCCTTGAAGATGCCCTAACG 58.983 55.000 0.00 0.00 0.00 3.18
2543 4247 2.019984 CTGCCTTGAAGATGCCCTAAC 58.980 52.381 0.00 0.00 0.00 2.34
2545 4249 1.583556 TCTGCCTTGAAGATGCCCTA 58.416 50.000 0.00 0.00 0.00 3.53
2546 4250 0.924823 ATCTGCCTTGAAGATGCCCT 59.075 50.000 0.00 0.00 33.08 5.19
2554 4258 4.365514 TGGTTTACAGATCTGCCTTGAA 57.634 40.909 22.83 3.86 0.00 2.69
2555 4259 4.517285 GATGGTTTACAGATCTGCCTTGA 58.483 43.478 22.83 3.13 0.00 3.02
2556 4260 3.629398 GGATGGTTTACAGATCTGCCTTG 59.371 47.826 22.83 0.00 0.00 3.61
2557 4261 3.682718 CGGATGGTTTACAGATCTGCCTT 60.683 47.826 22.83 13.01 0.00 4.35
2558 4262 2.158900 CGGATGGTTTACAGATCTGCCT 60.159 50.000 22.83 6.86 0.00 4.75
2559 4263 2.213499 CGGATGGTTTACAGATCTGCC 58.787 52.381 22.83 15.45 0.00 4.85
2560 4264 1.599542 GCGGATGGTTTACAGATCTGC 59.400 52.381 22.83 6.08 40.36 4.26
2561 4265 2.905075 TGCGGATGGTTTACAGATCTG 58.095 47.619 21.37 21.37 0.00 2.90
2562 4266 3.845781 ATGCGGATGGTTTACAGATCT 57.154 42.857 0.00 0.00 0.00 2.75
2563 4267 3.876914 TGAATGCGGATGGTTTACAGATC 59.123 43.478 0.00 0.00 0.00 2.75
2564 4268 3.884895 TGAATGCGGATGGTTTACAGAT 58.115 40.909 0.00 0.00 0.00 2.90
2565 4269 3.342377 TGAATGCGGATGGTTTACAGA 57.658 42.857 0.00 0.00 0.00 3.41
2566 4270 3.793129 GCATGAATGCGGATGGTTTACAG 60.793 47.826 0.00 0.00 44.67 2.74
2567 4271 2.098934 GCATGAATGCGGATGGTTTACA 59.901 45.455 0.00 0.00 44.67 2.41
2568 4272 2.731217 GCATGAATGCGGATGGTTTAC 58.269 47.619 0.00 0.00 44.67 2.01
2597 4301 5.389520 TGAATGACTTTTATGGTGGGACAA 58.610 37.500 0.00 0.00 44.16 3.18
2598 4302 4.991776 TGAATGACTTTTATGGTGGGACA 58.008 39.130 0.00 0.00 0.00 4.02
2599 4303 5.242838 TGTTGAATGACTTTTATGGTGGGAC 59.757 40.000 0.00 0.00 0.00 4.46
2600 4304 5.242838 GTGTTGAATGACTTTTATGGTGGGA 59.757 40.000 0.00 0.00 0.00 4.37
2601 4305 5.469479 GTGTTGAATGACTTTTATGGTGGG 58.531 41.667 0.00 0.00 0.00 4.61
2602 4306 5.049060 TCGTGTTGAATGACTTTTATGGTGG 60.049 40.000 0.00 0.00 0.00 4.61
2603 4307 5.996219 TCGTGTTGAATGACTTTTATGGTG 58.004 37.500 0.00 0.00 0.00 4.17
2604 4308 5.763204 ACTCGTGTTGAATGACTTTTATGGT 59.237 36.000 0.00 0.00 0.00 3.55
2605 4309 6.241207 ACTCGTGTTGAATGACTTTTATGG 57.759 37.500 0.00 0.00 0.00 2.74
2606 4310 7.643764 ACAAACTCGTGTTGAATGACTTTTATG 59.356 33.333 3.24 0.00 36.39 1.90
2607 4311 7.703328 ACAAACTCGTGTTGAATGACTTTTAT 58.297 30.769 3.24 0.00 36.39 1.40
2608 4312 7.079182 ACAAACTCGTGTTGAATGACTTTTA 57.921 32.000 3.24 0.00 36.39 1.52
2609 4313 5.949735 ACAAACTCGTGTTGAATGACTTTT 58.050 33.333 3.24 0.00 36.39 2.27
2610 4314 5.560966 ACAAACTCGTGTTGAATGACTTT 57.439 34.783 3.24 0.00 36.39 2.66
2611 4315 6.346598 CGATACAAACTCGTGTTGAATGACTT 60.347 38.462 3.24 0.00 36.39 3.01
2612 4316 5.118664 CGATACAAACTCGTGTTGAATGACT 59.881 40.000 3.24 0.00 36.39 3.41
2613 4317 5.305812 CGATACAAACTCGTGTTGAATGAC 58.694 41.667 3.24 0.00 36.39 3.06
2614 4318 4.387559 CCGATACAAACTCGTGTTGAATGA 59.612 41.667 3.24 0.00 36.39 2.57
2615 4319 4.151689 ACCGATACAAACTCGTGTTGAATG 59.848 41.667 3.24 1.55 36.39 2.67
2616 4320 4.312443 ACCGATACAAACTCGTGTTGAAT 58.688 39.130 3.24 0.00 36.39 2.57
2617 4321 3.719924 ACCGATACAAACTCGTGTTGAA 58.280 40.909 3.24 0.00 36.39 2.69
2618 4322 3.374220 ACCGATACAAACTCGTGTTGA 57.626 42.857 3.24 0.00 36.39 3.18
2619 4323 4.461992 AAACCGATACAAACTCGTGTTG 57.538 40.909 3.24 1.53 36.39 3.33
2620 4324 5.049167 TGTAAACCGATACAAACTCGTGTT 58.951 37.500 0.00 0.00 38.16 3.32
2621 4325 4.619973 TGTAAACCGATACAAACTCGTGT 58.380 39.130 0.00 0.00 33.02 4.49
2622 4326 5.186404 CTGTAAACCGATACAAACTCGTG 57.814 43.478 0.00 0.00 35.48 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.