Multiple sequence alignment - TraesCS5D01G498100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G498100 chr5D 100.000 4082 0 0 1 4082 528141000 528145081 0.000000e+00 7539.0
1 TraesCS5D01G498100 chr5D 84.744 2091 267 28 971 3029 527907202 527905132 0.000000e+00 2047.0
2 TraesCS5D01G498100 chr5A 94.839 3720 150 18 386 4082 655989480 655993180 0.000000e+00 5768.0
3 TraesCS5D01G498100 chr5A 85.228 2085 260 29 971 3031 655463867 655461807 0.000000e+00 2100.0
4 TraesCS5D01G498100 chr5A 76.570 589 128 8 2092 2672 597687192 597686606 8.520000e-82 315.0
5 TraesCS5D01G498100 chr5A 76.384 271 51 8 441 702 566605368 566605102 2.560000e-27 134.0
6 TraesCS5D01G498100 chr5B 96.267 1634 52 5 2451 4082 664948980 664950606 0.000000e+00 2671.0
7 TraesCS5D01G498100 chr5B 85.089 2079 258 30 983 3029 664685028 664682970 0.000000e+00 2074.0
8 TraesCS5D01G498100 chr5B 92.227 669 39 9 386 1045 664948314 664948978 0.000000e+00 935.0
9 TraesCS5D01G498100 chrUn 84.906 1219 141 24 1770 2959 263457706 263458910 0.000000e+00 1192.0
10 TraesCS5D01G498100 chrUn 95.513 156 5 1 3792 3945 147292144 147292299 8.760000e-62 248.0
11 TraesCS5D01G498100 chrUn 96.078 153 4 1 3795 3945 436598101 436597949 8.760000e-62 248.0
12 TraesCS5D01G498100 chrUn 94.872 156 6 1 3792 3945 147140686 147140841 4.080000e-60 243.0
13 TraesCS5D01G498100 chrUn 80.357 168 18 13 486 643 104628137 104628299 3.330000e-21 113.0
14 TraesCS5D01G498100 chr1A 93.586 343 7 2 46 388 544498709 544498382 7.880000e-137 497.0
15 TraesCS5D01G498100 chr1A 82.667 300 46 6 2371 2667 334448049 334448345 1.130000e-65 261.0
16 TraesCS5D01G498100 chr1A 100.000 38 0 0 1 38 544498740 544498703 2.040000e-08 71.3
17 TraesCS5D01G498100 chr6B 96.795 156 3 1 3792 3945 62220971 62221126 4.050000e-65 259.0
18 TraesCS5D01G498100 chr6B 96.154 156 4 1 3792 3945 647635591 647635746 1.880000e-63 254.0
19 TraesCS5D01G498100 chr6B 76.142 197 37 6 507 700 107174985 107175174 1.210000e-15 95.3
20 TraesCS5D01G498100 chr7B 96.154 156 4 1 3792 3945 670987245 670987400 1.880000e-63 254.0
21 TraesCS5D01G498100 chr7B 96.154 156 4 1 3792 3945 671242744 671242899 1.880000e-63 254.0
22 TraesCS5D01G498100 chr1D 80.844 308 53 6 2354 2658 294227451 294227755 1.900000e-58 237.0
23 TraesCS5D01G498100 chr7D 80.727 275 37 13 436 701 597572349 597572616 2.490000e-47 200.0
24 TraesCS5D01G498100 chr7D 78.947 266 49 5 442 701 60494780 60494516 1.510000e-39 174.0
25 TraesCS5D01G498100 chr3A 79.899 199 30 7 441 633 682997773 682997579 1.980000e-28 137.0
26 TraesCS5D01G498100 chr2D 75.746 268 52 9 441 699 647763099 647763362 5.540000e-24 122.0
27 TraesCS5D01G498100 chr2A 74.632 272 55 10 436 699 194116139 194116404 1.550000e-19 108.0
28 TraesCS5D01G498100 chr2B 77.358 106 22 2 1391 1495 551638199 551638303 1.230000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G498100 chr5D 528141000 528145081 4081 False 7539 7539 100.000 1 4082 1 chr5D.!!$F1 4081
1 TraesCS5D01G498100 chr5D 527905132 527907202 2070 True 2047 2047 84.744 971 3029 1 chr5D.!!$R1 2058
2 TraesCS5D01G498100 chr5A 655989480 655993180 3700 False 5768 5768 94.839 386 4082 1 chr5A.!!$F1 3696
3 TraesCS5D01G498100 chr5A 655461807 655463867 2060 True 2100 2100 85.228 971 3031 1 chr5A.!!$R3 2060
4 TraesCS5D01G498100 chr5A 597686606 597687192 586 True 315 315 76.570 2092 2672 1 chr5A.!!$R2 580
5 TraesCS5D01G498100 chr5B 664682970 664685028 2058 True 2074 2074 85.089 983 3029 1 chr5B.!!$R1 2046
6 TraesCS5D01G498100 chr5B 664948314 664950606 2292 False 1803 2671 94.247 386 4082 2 chr5B.!!$F1 3696
7 TraesCS5D01G498100 chrUn 263457706 263458910 1204 False 1192 1192 84.906 1770 2959 1 chrUn.!!$F4 1189

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.031449 GAGAGGCTATCGCACAGACC 59.969 60.0 0.00 0.0 38.10 3.85 F
283 284 0.107410 TGCCCATATCCGCGAGTTTT 60.107 50.0 8.23 0.0 0.00 2.43 F
2040 2099 0.188587 ACGGCCCTCATAGGATCAGA 59.811 55.0 0.00 0.0 37.67 3.27 F
2160 2219 0.321653 AGGTTGCCGTCAAGGTGATC 60.322 55.0 0.00 0.0 43.70 2.92 F
2301 2360 0.654160 TCGTCTACGACTACATGCCG 59.346 55.0 0.14 0.0 44.22 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2064 2123 0.250553 TGAGGTCGCGGAAACCATTT 60.251 50.000 16.76 0.0 39.39 2.32 R
2232 2291 0.690762 GGAGGAGTTGCACCAGGTTA 59.309 55.000 0.00 0.0 0.00 2.85 R
2916 2981 1.047002 CTCCAAGATCCTCTGGCGAT 58.953 55.000 1.93 0.0 0.00 4.58 R
2974 3039 1.450531 AACGACACTCCGACGAACCT 61.451 55.000 0.00 0.0 36.58 3.50 R
3564 3629 1.671556 GGTGGCGCCAACCAATTTAAG 60.672 52.381 34.88 0.0 42.70 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.342279 CAGCGTTGACTTCCCCGA 59.658 61.111 0.00 0.00 0.00 5.14
18 19 2.027625 CAGCGTTGACTTCCCCGAC 61.028 63.158 0.00 0.00 0.00 4.79
19 20 2.207924 AGCGTTGACTTCCCCGACT 61.208 57.895 0.00 0.00 0.00 4.18
20 21 1.737008 GCGTTGACTTCCCCGACTC 60.737 63.158 0.00 0.00 0.00 3.36
21 22 1.965219 CGTTGACTTCCCCGACTCT 59.035 57.895 0.00 0.00 0.00 3.24
22 23 0.109226 CGTTGACTTCCCCGACTCTC 60.109 60.000 0.00 0.00 0.00 3.20
23 24 0.246910 GTTGACTTCCCCGACTCTCC 59.753 60.000 0.00 0.00 0.00 3.71
24 25 1.248785 TTGACTTCCCCGACTCTCCG 61.249 60.000 0.00 0.00 0.00 4.63
25 26 1.378250 GACTTCCCCGACTCTCCGA 60.378 63.158 0.00 0.00 0.00 4.55
26 27 1.378124 GACTTCCCCGACTCTCCGAG 61.378 65.000 0.00 0.00 35.52 4.63
27 28 1.077644 CTTCCCCGACTCTCCGAGA 60.078 63.158 0.00 0.00 33.32 4.04
28 29 1.378124 CTTCCCCGACTCTCCGAGAC 61.378 65.000 0.00 0.00 33.32 3.36
29 30 2.829458 CCCCGACTCTCCGAGACC 60.829 72.222 0.00 0.00 33.32 3.85
30 31 3.203412 CCCGACTCTCCGAGACCG 61.203 72.222 0.00 1.57 33.32 4.79
40 41 4.082523 CGAGACCGGCCATGGTGT 62.083 66.667 14.67 8.53 44.01 4.16
41 42 2.125106 GAGACCGGCCATGGTGTC 60.125 66.667 14.67 16.79 44.01 3.67
42 43 2.607750 AGACCGGCCATGGTGTCT 60.608 61.111 21.01 21.01 44.01 3.41
43 44 2.125106 GACCGGCCATGGTGTCTC 60.125 66.667 14.67 0.00 44.01 3.36
44 45 3.682292 GACCGGCCATGGTGTCTCC 62.682 68.421 14.67 4.30 44.01 3.71
45 46 4.838152 CCGGCCATGGTGTCTCCG 62.838 72.222 17.92 17.92 39.52 4.63
52 53 4.408821 TGGTGTCTCCGCCATGGC 62.409 66.667 27.67 27.67 46.25 4.40
53 54 4.408821 GGTGTCTCCGCCATGGCA 62.409 66.667 34.93 16.95 41.16 4.92
54 55 3.127533 GTGTCTCCGCCATGGCAC 61.128 66.667 34.93 25.08 42.06 5.01
55 56 3.321648 TGTCTCCGCCATGGCACT 61.322 61.111 34.93 0.00 42.06 4.40
56 57 2.821366 GTCTCCGCCATGGCACTG 60.821 66.667 34.93 22.39 42.06 3.66
57 58 4.783621 TCTCCGCCATGGCACTGC 62.784 66.667 34.93 9.22 42.06 4.40
58 59 4.790962 CTCCGCCATGGCACTGCT 62.791 66.667 34.93 0.00 42.06 4.24
59 60 4.349503 TCCGCCATGGCACTGCTT 62.350 61.111 34.93 0.00 42.06 3.91
60 61 3.818787 CCGCCATGGCACTGCTTC 61.819 66.667 34.93 4.54 42.06 3.86
61 62 4.170062 CGCCATGGCACTGCTTCG 62.170 66.667 34.93 13.38 42.06 3.79
62 63 3.058160 GCCATGGCACTGCTTCGT 61.058 61.111 32.08 0.00 41.49 3.85
63 64 3.044059 GCCATGGCACTGCTTCGTC 62.044 63.158 32.08 0.00 41.49 4.20
64 65 2.401766 CCATGGCACTGCTTCGTCC 61.402 63.158 0.00 0.00 0.00 4.79
65 66 2.045926 ATGGCACTGCTTCGTCCC 60.046 61.111 0.00 0.00 0.00 4.46
66 67 2.894257 ATGGCACTGCTTCGTCCCA 61.894 57.895 0.00 0.00 0.00 4.37
67 68 2.743928 GGCACTGCTTCGTCCCAG 60.744 66.667 0.00 0.00 35.26 4.45
68 69 2.743928 GCACTGCTTCGTCCCAGG 60.744 66.667 0.00 0.00 33.43 4.45
69 70 2.743928 CACTGCTTCGTCCCAGGC 60.744 66.667 0.00 0.00 33.43 4.85
70 71 4.379243 ACTGCTTCGTCCCAGGCG 62.379 66.667 0.00 0.00 33.43 5.52
71 72 4.379243 CTGCTTCGTCCCAGGCGT 62.379 66.667 0.00 0.00 0.00 5.68
72 73 4.373116 TGCTTCGTCCCAGGCGTC 62.373 66.667 0.00 0.00 0.00 5.19
74 75 4.052229 CTTCGTCCCAGGCGTCGT 62.052 66.667 0.00 0.00 0.00 4.34
75 76 3.966026 CTTCGTCCCAGGCGTCGTC 62.966 68.421 0.00 0.00 0.00 4.20
77 78 4.052229 CGTCCCAGGCGTCGTCTT 62.052 66.667 0.00 0.00 0.00 3.01
78 79 2.126031 GTCCCAGGCGTCGTCTTC 60.126 66.667 0.00 0.00 0.00 2.87
79 80 3.379445 TCCCAGGCGTCGTCTTCC 61.379 66.667 0.00 0.00 0.00 3.46
80 81 3.382832 CCCAGGCGTCGTCTTCCT 61.383 66.667 0.00 0.00 0.00 3.36
81 82 2.182030 CCAGGCGTCGTCTTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
82 83 2.202492 CAGGCGTCGTCTTCCTCG 60.202 66.667 0.00 0.00 0.00 4.63
83 84 2.672307 AGGCGTCGTCTTCCTCGT 60.672 61.111 0.00 0.00 0.00 4.18
84 85 2.504244 GGCGTCGTCTTCCTCGTG 60.504 66.667 0.00 0.00 0.00 4.35
85 86 2.504244 GCGTCGTCTTCCTCGTGG 60.504 66.667 0.00 0.00 0.00 4.94
86 87 2.504244 CGTCGTCTTCCTCGTGGC 60.504 66.667 0.00 0.00 0.00 5.01
87 88 2.126031 GTCGTCTTCCTCGTGGCC 60.126 66.667 0.00 0.00 0.00 5.36
88 89 3.744719 TCGTCTTCCTCGTGGCCG 61.745 66.667 0.00 0.00 0.00 6.13
89 90 4.796231 CGTCTTCCTCGTGGCCGG 62.796 72.222 0.00 0.00 33.95 6.13
90 91 3.692406 GTCTTCCTCGTGGCCGGT 61.692 66.667 1.90 0.00 33.95 5.28
91 92 3.691342 TCTTCCTCGTGGCCGGTG 61.691 66.667 1.90 0.00 33.95 4.94
92 93 4.760047 CTTCCTCGTGGCCGGTGG 62.760 72.222 1.90 3.06 33.95 4.61
109 110 3.372730 GCCAAGATGCCACGCCAA 61.373 61.111 0.00 0.00 0.00 4.52
110 111 2.879907 CCAAGATGCCACGCCAAG 59.120 61.111 0.00 0.00 0.00 3.61
111 112 2.180017 CAAGATGCCACGCCAAGC 59.820 61.111 0.00 0.00 0.00 4.01
112 113 2.034687 AAGATGCCACGCCAAGCT 59.965 55.556 0.00 0.00 0.00 3.74
113 114 1.026182 CAAGATGCCACGCCAAGCTA 61.026 55.000 0.00 0.00 0.00 3.32
114 115 0.322456 AAGATGCCACGCCAAGCTAA 60.322 50.000 0.00 0.00 0.00 3.09
115 116 1.026718 AGATGCCACGCCAAGCTAAC 61.027 55.000 0.00 0.00 0.00 2.34
116 117 1.993369 GATGCCACGCCAAGCTAACC 61.993 60.000 0.00 0.00 0.00 2.85
117 118 2.359975 GCCACGCCAAGCTAACCT 60.360 61.111 0.00 0.00 0.00 3.50
118 119 2.690778 GCCACGCCAAGCTAACCTG 61.691 63.158 0.00 0.00 0.00 4.00
119 120 1.302511 CCACGCCAAGCTAACCTGT 60.303 57.895 0.00 0.00 0.00 4.00
120 121 1.298859 CCACGCCAAGCTAACCTGTC 61.299 60.000 0.00 0.00 0.00 3.51
121 122 1.374252 ACGCCAAGCTAACCTGTCG 60.374 57.895 0.00 0.00 0.00 4.35
122 123 1.374252 CGCCAAGCTAACCTGTCGT 60.374 57.895 0.00 0.00 0.00 4.34
123 124 0.108992 CGCCAAGCTAACCTGTCGTA 60.109 55.000 0.00 0.00 0.00 3.43
124 125 1.356938 GCCAAGCTAACCTGTCGTAC 58.643 55.000 0.00 0.00 0.00 3.67
125 126 2.005560 GCCAAGCTAACCTGTCGTACC 61.006 57.143 0.00 0.00 0.00 3.34
126 127 1.549170 CCAAGCTAACCTGTCGTACCT 59.451 52.381 0.00 0.00 0.00 3.08
127 128 2.607187 CAAGCTAACCTGTCGTACCTG 58.393 52.381 0.00 0.00 0.00 4.00
128 129 1.183549 AGCTAACCTGTCGTACCTGG 58.816 55.000 0.00 0.00 0.00 4.45
129 130 0.893447 GCTAACCTGTCGTACCTGGT 59.107 55.000 4.05 4.05 38.19 4.00
130 131 1.135170 GCTAACCTGTCGTACCTGGTC 60.135 57.143 0.63 0.00 35.82 4.02
131 132 1.131883 CTAACCTGTCGTACCTGGTCG 59.868 57.143 0.63 7.49 35.82 4.79
132 133 2.151049 AACCTGTCGTACCTGGTCGC 62.151 60.000 0.63 4.70 35.82 5.19
133 134 2.202440 CTGTCGTACCTGGTCGCG 60.202 66.667 0.63 10.05 0.00 5.87
134 135 3.678717 CTGTCGTACCTGGTCGCGG 62.679 68.421 18.96 12.45 0.00 6.46
165 166 4.365505 GGCCGCCGCTCCTAGATC 62.366 72.222 0.00 0.00 34.44 2.75
166 167 4.365505 GCCGCCGCTCCTAGATCC 62.366 72.222 0.00 0.00 0.00 3.36
167 168 3.686045 CCGCCGCTCCTAGATCCC 61.686 72.222 0.00 0.00 0.00 3.85
168 169 3.686045 CGCCGCTCCTAGATCCCC 61.686 72.222 0.00 0.00 0.00 4.81
169 170 3.315140 GCCGCTCCTAGATCCCCC 61.315 72.222 0.00 0.00 0.00 5.40
170 171 2.992114 CCGCTCCTAGATCCCCCG 60.992 72.222 0.00 0.00 0.00 5.73
171 172 3.686045 CGCTCCTAGATCCCCCGC 61.686 72.222 0.00 0.00 0.00 6.13
172 173 3.315140 GCTCCTAGATCCCCCGCC 61.315 72.222 0.00 0.00 0.00 6.13
173 174 2.992114 CTCCTAGATCCCCCGCCG 60.992 72.222 0.00 0.00 0.00 6.46
176 177 3.996124 CTAGATCCCCCGCCGCTG 61.996 72.222 0.00 0.00 0.00 5.18
190 191 3.782244 GCTGCCGCACTCAACGAG 61.782 66.667 0.00 0.00 35.78 4.18
191 192 2.049156 CTGCCGCACTCAACGAGA 60.049 61.111 0.00 0.00 33.32 4.04
203 204 3.321497 CTCAACGAGAGGAAAAGTGAGG 58.679 50.000 0.00 0.00 40.84 3.86
204 205 2.037251 TCAACGAGAGGAAAAGTGAGGG 59.963 50.000 0.00 0.00 0.00 4.30
205 206 0.977395 ACGAGAGGAAAAGTGAGGGG 59.023 55.000 0.00 0.00 0.00 4.79
206 207 1.267121 CGAGAGGAAAAGTGAGGGGA 58.733 55.000 0.00 0.00 0.00 4.81
207 208 1.205893 CGAGAGGAAAAGTGAGGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
208 209 1.557371 GAGAGGAAAAGTGAGGGGAGG 59.443 57.143 0.00 0.00 0.00 4.30
209 210 1.132365 AGAGGAAAAGTGAGGGGAGGT 60.132 52.381 0.00 0.00 0.00 3.85
210 211 2.113777 AGAGGAAAAGTGAGGGGAGGTA 59.886 50.000 0.00 0.00 0.00 3.08
211 212 2.910977 GAGGAAAAGTGAGGGGAGGTAA 59.089 50.000 0.00 0.00 0.00 2.85
212 213 2.643304 AGGAAAAGTGAGGGGAGGTAAC 59.357 50.000 0.00 0.00 0.00 2.50
213 214 2.614734 GGAAAAGTGAGGGGAGGTAACG 60.615 54.545 0.00 0.00 46.39 3.18
214 215 2.019807 AAAGTGAGGGGAGGTAACGA 57.980 50.000 0.00 0.00 46.39 3.85
215 216 1.558233 AAGTGAGGGGAGGTAACGAG 58.442 55.000 0.00 0.00 46.39 4.18
216 217 0.971447 AGTGAGGGGAGGTAACGAGC 60.971 60.000 0.00 0.00 46.39 5.03
217 218 2.050350 TGAGGGGAGGTAACGAGCG 61.050 63.158 0.00 0.00 46.39 5.03
218 219 1.751927 GAGGGGAGGTAACGAGCGA 60.752 63.158 0.00 0.00 46.39 4.93
219 220 1.726533 GAGGGGAGGTAACGAGCGAG 61.727 65.000 0.00 0.00 46.39 5.03
220 221 1.751927 GGGGAGGTAACGAGCGAGA 60.752 63.158 0.00 0.00 46.39 4.04
221 222 1.318158 GGGGAGGTAACGAGCGAGAA 61.318 60.000 0.00 0.00 46.39 2.87
222 223 0.100861 GGGAGGTAACGAGCGAGAAG 59.899 60.000 0.00 0.00 46.39 2.85
223 224 1.093159 GGAGGTAACGAGCGAGAAGA 58.907 55.000 0.00 0.00 46.39 2.87
224 225 1.471684 GGAGGTAACGAGCGAGAAGAA 59.528 52.381 0.00 0.00 46.39 2.52
225 226 2.094854 GGAGGTAACGAGCGAGAAGAAA 60.095 50.000 0.00 0.00 46.39 2.52
226 227 3.572584 GAGGTAACGAGCGAGAAGAAAA 58.427 45.455 0.00 0.00 46.39 2.29
227 228 3.315418 AGGTAACGAGCGAGAAGAAAAC 58.685 45.455 0.00 0.00 46.39 2.43
228 229 2.090195 GGTAACGAGCGAGAAGAAAACG 59.910 50.000 0.00 0.00 0.00 3.60
229 230 2.129823 AACGAGCGAGAAGAAAACGA 57.870 45.000 0.00 0.00 0.00 3.85
230 231 2.349297 ACGAGCGAGAAGAAAACGAT 57.651 45.000 0.00 0.00 0.00 3.73
231 232 2.673833 ACGAGCGAGAAGAAAACGATT 58.326 42.857 0.00 0.00 0.00 3.34
232 233 2.662156 ACGAGCGAGAAGAAAACGATTC 59.338 45.455 0.00 0.00 0.00 2.52
233 234 2.283951 CGAGCGAGAAGAAAACGATTCG 60.284 50.000 4.14 4.14 32.97 3.34
234 235 1.993370 AGCGAGAAGAAAACGATTCGG 59.007 47.619 11.29 0.00 0.00 4.30
235 236 1.725164 GCGAGAAGAAAACGATTCGGT 59.275 47.619 11.29 0.00 0.00 4.69
236 237 2.472397 GCGAGAAGAAAACGATTCGGTG 60.472 50.000 11.29 0.00 0.00 4.94
237 238 2.984471 CGAGAAGAAAACGATTCGGTGA 59.016 45.455 11.29 0.00 0.00 4.02
238 239 3.059570 CGAGAAGAAAACGATTCGGTGAG 59.940 47.826 11.29 0.00 0.00 3.51
239 240 4.235360 GAGAAGAAAACGATTCGGTGAGA 58.765 43.478 11.29 0.00 0.00 3.27
240 241 4.238514 AGAAGAAAACGATTCGGTGAGAG 58.761 43.478 11.29 0.00 0.00 3.20
241 242 2.960819 AGAAAACGATTCGGTGAGAGG 58.039 47.619 11.29 0.00 0.00 3.69
242 243 1.393883 GAAAACGATTCGGTGAGAGGC 59.606 52.381 11.29 0.00 0.00 4.70
243 244 0.608640 AAACGATTCGGTGAGAGGCT 59.391 50.000 11.29 0.00 0.00 4.58
244 245 1.471119 AACGATTCGGTGAGAGGCTA 58.529 50.000 11.29 0.00 0.00 3.93
245 246 1.693627 ACGATTCGGTGAGAGGCTAT 58.306 50.000 11.29 0.00 0.00 2.97
246 247 1.609555 ACGATTCGGTGAGAGGCTATC 59.390 52.381 11.29 1.27 0.00 2.08
247 248 1.400371 CGATTCGGTGAGAGGCTATCG 60.400 57.143 4.47 1.19 0.00 2.92
248 249 0.315568 ATTCGGTGAGAGGCTATCGC 59.684 55.000 14.06 14.06 0.00 4.58
249 250 1.035385 TTCGGTGAGAGGCTATCGCA 61.035 55.000 22.60 1.92 38.10 5.10
253 254 3.191182 TGAGAGGCTATCGCACAGA 57.809 52.632 4.47 0.00 38.10 3.41
254 255 0.741326 TGAGAGGCTATCGCACAGAC 59.259 55.000 4.47 0.00 38.10 3.51
255 256 0.031449 GAGAGGCTATCGCACAGACC 59.969 60.000 0.00 0.00 38.10 3.85
256 257 1.299468 GAGGCTATCGCACAGACCG 60.299 63.158 0.00 0.00 38.10 4.79
257 258 1.725557 GAGGCTATCGCACAGACCGA 61.726 60.000 0.00 0.00 39.24 4.69
258 259 1.141019 GGCTATCGCACAGACCGAA 59.859 57.895 0.00 0.00 38.31 4.30
259 260 1.146358 GGCTATCGCACAGACCGAAC 61.146 60.000 0.00 0.00 38.31 3.95
260 261 1.472276 GCTATCGCACAGACCGAACG 61.472 60.000 0.00 0.00 38.31 3.95
261 262 0.866061 CTATCGCACAGACCGAACGG 60.866 60.000 11.83 11.83 38.31 4.44
262 263 2.274232 TATCGCACAGACCGAACGGG 62.274 60.000 17.44 2.59 38.31 5.28
263 264 4.351938 CGCACAGACCGAACGGGA 62.352 66.667 17.44 0.00 39.97 5.14
264 265 2.264794 GCACAGACCGAACGGGAT 59.735 61.111 17.44 2.61 39.97 3.85
265 266 2.100631 GCACAGACCGAACGGGATG 61.101 63.158 17.44 15.99 39.97 3.51
266 267 2.100631 CACAGACCGAACGGGATGC 61.101 63.158 17.44 4.25 39.97 3.91
267 268 2.511600 CAGACCGAACGGGATGCC 60.512 66.667 17.44 0.00 39.97 4.40
268 269 3.782443 AGACCGAACGGGATGCCC 61.782 66.667 17.44 0.00 41.09 5.36
269 270 4.090588 GACCGAACGGGATGCCCA 62.091 66.667 17.44 0.00 45.83 5.36
270 271 3.400599 GACCGAACGGGATGCCCAT 62.401 63.158 17.44 0.00 45.83 4.00
271 272 2.035237 GACCGAACGGGATGCCCATA 62.035 60.000 17.44 0.00 45.83 2.74
272 273 1.374947 CCGAACGGGATGCCCATAT 59.625 57.895 5.25 0.00 45.83 1.78
273 274 0.673644 CCGAACGGGATGCCCATATC 60.674 60.000 5.25 0.00 45.83 1.63
274 275 0.673644 CGAACGGGATGCCCATATCC 60.674 60.000 0.00 0.00 45.83 2.59
275 276 0.673644 GAACGGGATGCCCATATCCG 60.674 60.000 16.02 16.02 45.83 4.18
276 277 2.436646 CGGGATGCCCATATCCGC 60.437 66.667 0.00 0.00 45.83 5.54
277 278 2.436646 GGGATGCCCATATCCGCG 60.437 66.667 0.00 0.00 46.19 6.46
278 279 2.662596 GGATGCCCATATCCGCGA 59.337 61.111 8.23 0.00 37.48 5.87
279 280 1.448540 GGATGCCCATATCCGCGAG 60.449 63.158 8.23 0.00 37.48 5.03
280 281 1.293498 GATGCCCATATCCGCGAGT 59.707 57.895 8.23 0.00 0.00 4.18
281 282 0.320771 GATGCCCATATCCGCGAGTT 60.321 55.000 8.23 0.00 0.00 3.01
282 283 0.108585 ATGCCCATATCCGCGAGTTT 59.891 50.000 8.23 0.00 0.00 2.66
283 284 0.107410 TGCCCATATCCGCGAGTTTT 60.107 50.000 8.23 0.00 0.00 2.43
284 285 1.021968 GCCCATATCCGCGAGTTTTT 58.978 50.000 8.23 0.00 0.00 1.94
285 286 1.268539 GCCCATATCCGCGAGTTTTTG 60.269 52.381 8.23 0.00 0.00 2.44
286 287 1.333619 CCCATATCCGCGAGTTTTTGG 59.666 52.381 8.23 6.74 0.00 3.28
287 288 1.268539 CCATATCCGCGAGTTTTTGGC 60.269 52.381 8.23 0.00 0.00 4.52
291 292 2.127383 CGCGAGTTTTTGGCGGAC 60.127 61.111 0.00 0.00 45.69 4.79
292 293 2.127383 GCGAGTTTTTGGCGGACG 60.127 61.111 0.00 0.00 0.00 4.79
293 294 2.600475 GCGAGTTTTTGGCGGACGA 61.600 57.895 0.00 0.00 0.00 4.20
294 295 1.491563 CGAGTTTTTGGCGGACGAG 59.508 57.895 0.00 0.00 0.00 4.18
295 296 1.206831 GAGTTTTTGGCGGACGAGC 59.793 57.895 0.00 0.00 0.00 5.03
296 297 2.127383 GTTTTTGGCGGACGAGCG 60.127 61.111 0.00 0.00 38.18 5.03
297 298 3.350612 TTTTTGGCGGACGAGCGG 61.351 61.111 0.00 0.00 38.18 5.52
298 299 3.811118 TTTTTGGCGGACGAGCGGA 62.811 57.895 0.00 0.00 38.18 5.54
299 300 4.735132 TTTGGCGGACGAGCGGAG 62.735 66.667 0.00 0.00 38.18 4.63
314 315 2.691409 CGGAGCCTAAGTTTCATGGA 57.309 50.000 0.00 0.00 0.00 3.41
315 316 2.985896 CGGAGCCTAAGTTTCATGGAA 58.014 47.619 0.00 0.00 0.00 3.53
316 317 3.545703 CGGAGCCTAAGTTTCATGGAAT 58.454 45.455 0.00 0.00 0.00 3.01
317 318 4.703897 CGGAGCCTAAGTTTCATGGAATA 58.296 43.478 0.00 0.00 0.00 1.75
318 319 5.308825 CGGAGCCTAAGTTTCATGGAATAT 58.691 41.667 0.00 0.00 0.00 1.28
319 320 5.765182 CGGAGCCTAAGTTTCATGGAATATT 59.235 40.000 0.00 0.00 0.00 1.28
320 321 6.073003 CGGAGCCTAAGTTTCATGGAATATTC 60.073 42.308 6.93 6.93 0.00 1.75
335 336 5.836347 GGAATATTCCAAGAATCTGGTTGC 58.164 41.667 26.61 0.00 46.76 4.17
336 337 5.595952 GGAATATTCCAAGAATCTGGTTGCT 59.404 40.000 26.61 0.00 46.76 3.91
337 338 6.460676 GGAATATTCCAAGAATCTGGTTGCTG 60.461 42.308 26.61 0.00 46.76 4.41
338 339 3.507162 TTCCAAGAATCTGGTTGCTGA 57.493 42.857 0.00 0.00 37.74 4.26
339 340 3.726557 TCCAAGAATCTGGTTGCTGAT 57.273 42.857 0.00 0.00 37.74 2.90
340 341 4.842531 TCCAAGAATCTGGTTGCTGATA 57.157 40.909 0.00 0.00 37.74 2.15
341 342 5.378230 TCCAAGAATCTGGTTGCTGATAT 57.622 39.130 0.00 0.00 37.74 1.63
342 343 5.371526 TCCAAGAATCTGGTTGCTGATATC 58.628 41.667 0.00 0.00 37.74 1.63
343 344 4.518211 CCAAGAATCTGGTTGCTGATATCC 59.482 45.833 0.00 0.00 0.00 2.59
344 345 4.363991 AGAATCTGGTTGCTGATATCCC 57.636 45.455 0.00 0.00 0.00 3.85
345 346 3.979347 AGAATCTGGTTGCTGATATCCCT 59.021 43.478 0.00 0.00 0.00 4.20
346 347 4.041444 AGAATCTGGTTGCTGATATCCCTC 59.959 45.833 0.00 0.00 0.00 4.30
347 348 2.050144 TCTGGTTGCTGATATCCCTCC 58.950 52.381 0.00 0.00 0.00 4.30
348 349 2.053244 CTGGTTGCTGATATCCCTCCT 58.947 52.381 0.00 0.00 0.00 3.69
349 350 2.038295 CTGGTTGCTGATATCCCTCCTC 59.962 54.545 0.00 0.00 0.00 3.71
350 351 1.001406 GGTTGCTGATATCCCTCCTCG 59.999 57.143 0.00 0.00 0.00 4.63
351 352 1.689273 GTTGCTGATATCCCTCCTCGT 59.311 52.381 0.00 0.00 0.00 4.18
352 353 1.621992 TGCTGATATCCCTCCTCGTC 58.378 55.000 0.00 0.00 0.00 4.20
353 354 0.892063 GCTGATATCCCTCCTCGTCC 59.108 60.000 0.00 0.00 0.00 4.79
354 355 1.823648 GCTGATATCCCTCCTCGTCCA 60.824 57.143 0.00 0.00 0.00 4.02
355 356 2.813907 CTGATATCCCTCCTCGTCCAT 58.186 52.381 0.00 0.00 0.00 3.41
356 357 3.878131 GCTGATATCCCTCCTCGTCCATA 60.878 52.174 0.00 0.00 0.00 2.74
357 358 4.344978 CTGATATCCCTCCTCGTCCATAA 58.655 47.826 0.00 0.00 0.00 1.90
358 359 4.747583 TGATATCCCTCCTCGTCCATAAA 58.252 43.478 0.00 0.00 0.00 1.40
359 360 4.527038 TGATATCCCTCCTCGTCCATAAAC 59.473 45.833 0.00 0.00 0.00 2.01
360 361 1.492764 TCCCTCCTCGTCCATAAACC 58.507 55.000 0.00 0.00 0.00 3.27
361 362 1.200519 CCCTCCTCGTCCATAAACCA 58.799 55.000 0.00 0.00 0.00 3.67
362 363 1.557832 CCCTCCTCGTCCATAAACCAA 59.442 52.381 0.00 0.00 0.00 3.67
363 364 2.026636 CCCTCCTCGTCCATAAACCAAA 60.027 50.000 0.00 0.00 0.00 3.28
364 365 3.007635 CCTCCTCGTCCATAAACCAAAC 58.992 50.000 0.00 0.00 0.00 2.93
365 366 3.558321 CCTCCTCGTCCATAAACCAAACA 60.558 47.826 0.00 0.00 0.00 2.83
366 367 3.670625 TCCTCGTCCATAAACCAAACAG 58.329 45.455 0.00 0.00 0.00 3.16
367 368 2.161609 CCTCGTCCATAAACCAAACAGC 59.838 50.000 0.00 0.00 0.00 4.40
368 369 3.074412 CTCGTCCATAAACCAAACAGCT 58.926 45.455 0.00 0.00 0.00 4.24
369 370 2.811431 TCGTCCATAAACCAAACAGCTG 59.189 45.455 13.48 13.48 0.00 4.24
370 371 2.095263 CGTCCATAAACCAAACAGCTGG 60.095 50.000 19.93 2.94 42.68 4.85
377 378 3.191182 CCAAACAGCTGGTATCCCC 57.809 57.895 19.93 0.00 0.00 4.81
378 379 0.625849 CCAAACAGCTGGTATCCCCT 59.374 55.000 19.93 0.00 0.00 4.79
379 380 1.005924 CCAAACAGCTGGTATCCCCTT 59.994 52.381 19.93 0.00 0.00 3.95
380 381 2.241176 CCAAACAGCTGGTATCCCCTTA 59.759 50.000 19.93 0.00 0.00 2.69
381 382 3.308832 CCAAACAGCTGGTATCCCCTTAA 60.309 47.826 19.93 0.00 0.00 1.85
382 383 4.340617 CAAACAGCTGGTATCCCCTTAAA 58.659 43.478 19.93 0.00 0.00 1.52
383 384 4.668138 AACAGCTGGTATCCCCTTAAAA 57.332 40.909 19.93 0.00 0.00 1.52
384 385 4.668138 ACAGCTGGTATCCCCTTAAAAA 57.332 40.909 19.93 0.00 0.00 1.94
468 471 6.330278 TCTCTCCGTTCAATAATGTAGTGTG 58.670 40.000 0.00 0.00 0.00 3.82
469 472 4.868171 TCTCCGTTCAATAATGTAGTGTGC 59.132 41.667 0.00 0.00 0.00 4.57
474 477 6.905076 CCGTTCAATAATGTAGTGTGCATAAC 59.095 38.462 0.00 0.00 0.00 1.89
516 522 7.202526 ACATCACAAATTGACCAAGTTTGTAG 58.797 34.615 0.00 12.91 42.35 2.74
563 569 8.900511 ATGTCAAACATAAATCACTTGATTCG 57.099 30.769 4.94 0.81 37.32 3.34
690 700 9.371136 CTATATGCACTACAATATGAAACGGAT 57.629 33.333 0.00 0.00 0.00 4.18
739 749 9.442033 GTTAGTTACAAGGTATTTTGACACAAC 57.558 33.333 0.00 0.00 0.00 3.32
890 902 3.222354 GACGCACCCTTGACCTCGT 62.222 63.158 0.00 0.00 0.00 4.18
896 908 2.286523 CCCTTGACCTCGTGCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
917 929 2.398554 CCAATGCCGTCCACTTCCG 61.399 63.158 0.00 0.00 0.00 4.30
932 944 0.957395 TTCCGCCGACGACTACTTCT 60.957 55.000 0.00 0.00 43.93 2.85
1045 1060 1.506907 TTCGGTCCTCCTCCTCCTCA 61.507 60.000 0.00 0.00 0.00 3.86
1252 1273 0.985490 GCCCATCTCCTTCTCCACCT 60.985 60.000 0.00 0.00 0.00 4.00
1431 1452 2.027751 GCCGTCGAGCTGGATACC 59.972 66.667 0.38 0.00 0.00 2.73
1707 1728 1.021390 CATGCCACGTCAACCTCTCC 61.021 60.000 0.00 0.00 0.00 3.71
1843 1864 3.378399 GACCTCTCCAAGCTCCCGC 62.378 68.421 0.00 0.00 0.00 6.13
1872 1899 2.029918 GTCGTCGGGATCATCATCATCA 60.030 50.000 0.00 0.00 0.00 3.07
1944 1979 2.191641 GTGATCCTGCTCCTGGCC 59.808 66.667 0.00 0.00 40.92 5.36
2013 2069 2.541466 GAGGAGGAAGAAGACTGGGAA 58.459 52.381 0.00 0.00 0.00 3.97
2019 2078 4.349365 AGGAAGAAGACTGGGAAGTAGAG 58.651 47.826 0.00 0.00 0.00 2.43
2031 2090 2.308690 GAAGTAGAGTACGGCCCTCAT 58.691 52.381 9.79 0.00 0.00 2.90
2040 2099 0.188587 ACGGCCCTCATAGGATCAGA 59.811 55.000 0.00 0.00 37.67 3.27
2055 2114 3.072184 GGATCAGATACAAGGACCTGCAT 59.928 47.826 0.00 0.00 0.00 3.96
2057 2116 2.171237 TCAGATACAAGGACCTGCATGG 59.829 50.000 0.00 0.00 42.93 3.66
2158 2217 1.070786 GAGGTTGCCGTCAAGGTGA 59.929 57.895 0.00 0.00 43.70 4.02
2160 2219 0.321653 AGGTTGCCGTCAAGGTGATC 60.322 55.000 0.00 0.00 43.70 2.92
2301 2360 0.654160 TCGTCTACGACTACATGCCG 59.346 55.000 0.14 0.00 44.22 5.69
2361 2426 2.125188 GAGCTGAGCTGGGAGCAC 60.125 66.667 13.71 0.00 45.56 4.40
2433 2498 2.205749 TGGGAGCAGGTGGTGGTA 59.794 61.111 0.00 0.00 36.87 3.25
2856 2921 3.372730 CACCCGGACCCGTTACGA 61.373 66.667 6.24 0.00 37.81 3.43
2967 3032 3.989787 TTCGAGCACAGCGAGGCA 61.990 61.111 0.00 0.00 39.14 4.75
3072 3137 2.097038 CGAGAAACGGCAGCTCCTG 61.097 63.158 0.00 0.00 38.46 3.86
3133 3198 4.389374 CAACTGCGGTTTCCCATAGATAT 58.611 43.478 8.58 0.00 32.73 1.63
3143 3208 8.092068 CGGTTTCCCATAGATATACACACATAA 58.908 37.037 0.00 0.00 0.00 1.90
3293 3358 1.444895 CACAGGCAAAATCGGCAGC 60.445 57.895 0.00 0.00 0.00 5.25
3371 3436 4.475135 GCGGACAGGGAAGAGGCC 62.475 72.222 0.00 0.00 0.00 5.19
3383 3448 2.486907 GGAAGAGGCCAGAGGATGAATG 60.487 54.545 5.01 0.00 0.00 2.67
3387 3452 2.106166 GAGGCCAGAGGATGAATGTCAT 59.894 50.000 5.01 0.00 40.34 3.06
3564 3629 4.606457 AGACATGAAGAAAGCAATACGC 57.394 40.909 0.00 0.00 42.91 4.42
3584 3649 0.318762 TTAAATTGGTTGGCGCCACC 59.681 50.000 32.95 31.05 38.42 4.61
3668 3733 5.529060 GCTGGAACTTCAAGGGATACATAAG 59.471 44.000 0.00 0.00 39.74 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.027625 GTCGGGGAAGTCAACGCTG 61.028 63.158 0.00 0.00 0.00 5.18
1 2 2.156051 GAGTCGGGGAAGTCAACGCT 62.156 60.000 0.00 0.00 0.00 5.07
2 3 1.737008 GAGTCGGGGAAGTCAACGC 60.737 63.158 0.00 0.00 0.00 4.84
3 4 0.109226 GAGAGTCGGGGAAGTCAACG 60.109 60.000 0.00 0.00 0.00 4.10
4 5 0.246910 GGAGAGTCGGGGAAGTCAAC 59.753 60.000 0.00 0.00 0.00 3.18
5 6 1.248785 CGGAGAGTCGGGGAAGTCAA 61.249 60.000 0.00 0.00 0.00 3.18
6 7 1.677966 CGGAGAGTCGGGGAAGTCA 60.678 63.158 0.00 0.00 0.00 3.41
7 8 1.378250 TCGGAGAGTCGGGGAAGTC 60.378 63.158 0.00 0.00 0.00 3.01
8 9 2.761844 TCGGAGAGTCGGGGAAGT 59.238 61.111 0.00 0.00 0.00 3.01
23 24 4.082523 ACACCATGGCCGGTCTCG 62.083 66.667 13.04 0.00 37.07 4.04
24 25 2.125106 GACACCATGGCCGGTCTC 60.125 66.667 13.04 0.00 37.07 3.36
25 26 2.607750 AGACACCATGGCCGGTCT 60.608 61.111 22.07 22.07 37.07 3.85
26 27 2.125106 GAGACACCATGGCCGGTC 60.125 66.667 13.04 16.86 37.07 4.79
27 28 3.717294 GGAGACACCATGGCCGGT 61.717 66.667 13.04 7.94 41.07 5.28
28 29 4.838152 CGGAGACACCATGGCCGG 62.838 72.222 13.04 0.00 38.40 6.13
31 32 4.408821 TGGCGGAGACACCATGGC 62.409 66.667 13.04 0.00 34.89 4.40
39 40 2.821366 CAGTGCCATGGCGGAGAC 60.821 66.667 30.87 22.74 45.51 3.36
40 41 4.783621 GCAGTGCCATGGCGGAGA 62.784 66.667 30.87 11.60 45.51 3.71
41 42 4.790962 AGCAGTGCCATGGCGGAG 62.791 66.667 30.87 22.46 45.51 4.63
42 43 4.349503 AAGCAGTGCCATGGCGGA 62.350 61.111 30.87 12.84 45.51 5.54
43 44 3.818787 GAAGCAGTGCCATGGCGG 61.819 66.667 30.87 22.89 45.51 6.13
44 45 4.170062 CGAAGCAGTGCCATGGCG 62.170 66.667 30.87 18.31 45.51 5.69
45 46 3.044059 GACGAAGCAGTGCCATGGC 62.044 63.158 30.54 30.54 42.35 4.40
46 47 2.401766 GGACGAAGCAGTGCCATGG 61.402 63.158 12.58 7.63 0.00 3.66
47 48 3.181367 GGACGAAGCAGTGCCATG 58.819 61.111 12.58 3.86 0.00 3.66
51 52 2.743928 CCTGGGACGAAGCAGTGC 60.744 66.667 7.13 7.13 0.00 4.40
52 53 2.743928 GCCTGGGACGAAGCAGTG 60.744 66.667 0.00 0.00 0.00 3.66
53 54 4.379243 CGCCTGGGACGAAGCAGT 62.379 66.667 0.00 0.00 0.00 4.40
54 55 4.379243 ACGCCTGGGACGAAGCAG 62.379 66.667 9.58 0.00 0.00 4.24
55 56 4.373116 GACGCCTGGGACGAAGCA 62.373 66.667 9.58 0.00 0.00 3.91
57 58 3.966026 GACGACGCCTGGGACGAAG 62.966 68.421 12.23 3.86 0.00 3.79
58 59 4.047059 GACGACGCCTGGGACGAA 62.047 66.667 12.23 0.00 0.00 3.85
60 61 3.966026 GAAGACGACGCCTGGGACG 62.966 68.421 0.00 4.75 0.00 4.79
61 62 2.126031 GAAGACGACGCCTGGGAC 60.126 66.667 0.00 0.00 0.00 4.46
62 63 3.379445 GGAAGACGACGCCTGGGA 61.379 66.667 0.00 0.00 0.00 4.37
63 64 3.358076 GAGGAAGACGACGCCTGGG 62.358 68.421 7.02 0.00 30.70 4.45
64 65 2.182030 GAGGAAGACGACGCCTGG 59.818 66.667 7.02 0.00 30.70 4.45
65 66 2.202492 CGAGGAAGACGACGCCTG 60.202 66.667 7.02 0.00 30.70 4.85
66 67 2.672307 ACGAGGAAGACGACGCCT 60.672 61.111 0.00 2.49 33.97 5.52
67 68 2.504244 CACGAGGAAGACGACGCC 60.504 66.667 0.00 0.00 34.70 5.68
68 69 2.504244 CCACGAGGAAGACGACGC 60.504 66.667 0.00 0.00 36.89 5.19
69 70 2.504244 GCCACGAGGAAGACGACG 60.504 66.667 1.86 0.00 36.89 5.12
70 71 2.126031 GGCCACGAGGAAGACGAC 60.126 66.667 1.86 0.00 36.89 4.34
71 72 3.744719 CGGCCACGAGGAAGACGA 61.745 66.667 2.24 0.00 44.60 4.20
72 73 4.796231 CCGGCCACGAGGAAGACG 62.796 72.222 2.24 0.94 44.60 4.18
73 74 3.692406 ACCGGCCACGAGGAAGAC 61.692 66.667 0.00 0.00 44.60 3.01
74 75 3.691342 CACCGGCCACGAGGAAGA 61.691 66.667 0.00 0.00 44.60 2.87
75 76 4.760047 CCACCGGCCACGAGGAAG 62.760 72.222 0.00 0.00 44.60 3.46
92 93 3.346631 CTTGGCGTGGCATCTTGGC 62.347 63.158 0.00 0.00 44.03 4.52
93 94 2.879907 CTTGGCGTGGCATCTTGG 59.120 61.111 0.00 0.00 0.00 3.61
94 95 1.026182 TAGCTTGGCGTGGCATCTTG 61.026 55.000 0.00 0.00 0.00 3.02
95 96 0.322456 TTAGCTTGGCGTGGCATCTT 60.322 50.000 0.00 0.00 0.00 2.40
96 97 1.026718 GTTAGCTTGGCGTGGCATCT 61.027 55.000 0.00 0.78 0.00 2.90
97 98 1.429423 GTTAGCTTGGCGTGGCATC 59.571 57.895 0.00 0.00 0.00 3.91
98 99 2.046285 GGTTAGCTTGGCGTGGCAT 61.046 57.895 0.00 0.00 0.00 4.40
99 100 2.671619 GGTTAGCTTGGCGTGGCA 60.672 61.111 0.00 0.00 0.00 4.92
100 101 2.359975 AGGTTAGCTTGGCGTGGC 60.360 61.111 0.00 0.00 0.00 5.01
101 102 1.298859 GACAGGTTAGCTTGGCGTGG 61.299 60.000 0.00 0.00 0.00 4.94
102 103 1.626654 CGACAGGTTAGCTTGGCGTG 61.627 60.000 8.84 3.61 46.42 5.34
103 104 1.374252 CGACAGGTTAGCTTGGCGT 60.374 57.895 8.84 0.00 46.42 5.68
104 105 3.474806 CGACAGGTTAGCTTGGCG 58.525 61.111 1.88 1.88 46.41 5.69
105 106 1.356938 GTACGACAGGTTAGCTTGGC 58.643 55.000 0.00 0.00 0.00 4.52
106 107 1.549170 AGGTACGACAGGTTAGCTTGG 59.451 52.381 0.00 0.00 0.00 3.61
107 108 2.607187 CAGGTACGACAGGTTAGCTTG 58.393 52.381 0.00 0.00 0.00 4.01
108 109 1.549170 CCAGGTACGACAGGTTAGCTT 59.451 52.381 0.00 0.00 0.00 3.74
109 110 1.183549 CCAGGTACGACAGGTTAGCT 58.816 55.000 0.00 0.00 0.00 3.32
110 111 0.893447 ACCAGGTACGACAGGTTAGC 59.107 55.000 0.00 0.00 0.00 3.09
111 112 1.131883 CGACCAGGTACGACAGGTTAG 59.868 57.143 0.00 0.00 33.77 2.34
112 113 1.167851 CGACCAGGTACGACAGGTTA 58.832 55.000 0.00 0.00 33.77 2.85
113 114 1.962144 CGACCAGGTACGACAGGTT 59.038 57.895 0.00 0.00 33.77 3.50
114 115 2.633509 GCGACCAGGTACGACAGGT 61.634 63.158 13.67 0.00 37.00 4.00
115 116 2.181021 GCGACCAGGTACGACAGG 59.819 66.667 13.67 0.00 0.00 4.00
116 117 2.202440 CGCGACCAGGTACGACAG 60.202 66.667 0.00 2.97 0.00 3.51
117 118 3.740397 CCGCGACCAGGTACGACA 61.740 66.667 8.23 0.00 0.00 4.35
148 149 4.365505 GATCTAGGAGCGGCGGCC 62.366 72.222 13.24 9.54 41.24 6.13
149 150 4.365505 GGATCTAGGAGCGGCGGC 62.366 72.222 9.78 8.43 40.37 6.53
150 151 3.686045 GGGATCTAGGAGCGGCGG 61.686 72.222 9.78 0.00 0.00 6.13
151 152 3.686045 GGGGATCTAGGAGCGGCG 61.686 72.222 0.51 0.51 0.00 6.46
152 153 3.315140 GGGGGATCTAGGAGCGGC 61.315 72.222 0.00 0.00 0.00 6.53
153 154 2.992114 CGGGGGATCTAGGAGCGG 60.992 72.222 0.00 0.00 0.00 5.52
154 155 3.686045 GCGGGGGATCTAGGAGCG 61.686 72.222 0.00 0.00 0.00 5.03
155 156 3.315140 GGCGGGGGATCTAGGAGC 61.315 72.222 0.00 0.00 0.00 4.70
156 157 2.992114 CGGCGGGGGATCTAGGAG 60.992 72.222 0.00 0.00 0.00 3.69
159 160 3.996124 CAGCGGCGGGGGATCTAG 61.996 72.222 9.78 0.00 0.00 2.43
173 174 3.782244 CTCGTTGAGTGCGGCAGC 61.782 66.667 1.18 0.31 45.41 5.25
174 175 2.049156 TCTCGTTGAGTGCGGCAG 60.049 61.111 1.18 0.00 0.00 4.85
175 176 2.049156 CTCTCGTTGAGTGCGGCA 60.049 61.111 0.00 0.00 37.99 5.69
176 177 2.765250 TTCCTCTCGTTGAGTGCGGC 62.765 60.000 0.00 0.00 41.11 6.53
177 178 0.319555 TTTCCTCTCGTTGAGTGCGG 60.320 55.000 7.25 0.00 41.11 5.69
178 179 1.457303 CTTTTCCTCTCGTTGAGTGCG 59.543 52.381 7.25 0.00 41.11 5.34
179 180 2.221981 CACTTTTCCTCTCGTTGAGTGC 59.778 50.000 7.25 0.00 41.11 4.40
180 181 3.717707 TCACTTTTCCTCTCGTTGAGTG 58.282 45.455 7.25 0.00 41.11 3.51
181 182 3.243907 CCTCACTTTTCCTCTCGTTGAGT 60.244 47.826 7.25 0.00 41.11 3.41
182 183 3.321497 CCTCACTTTTCCTCTCGTTGAG 58.679 50.000 0.00 0.00 42.30 3.02
183 184 2.037251 CCCTCACTTTTCCTCTCGTTGA 59.963 50.000 0.00 0.00 0.00 3.18
184 185 2.417719 CCCTCACTTTTCCTCTCGTTG 58.582 52.381 0.00 0.00 0.00 4.10
185 186 1.348036 CCCCTCACTTTTCCTCTCGTT 59.652 52.381 0.00 0.00 0.00 3.85
186 187 0.977395 CCCCTCACTTTTCCTCTCGT 59.023 55.000 0.00 0.00 0.00 4.18
187 188 1.205893 CTCCCCTCACTTTTCCTCTCG 59.794 57.143 0.00 0.00 0.00 4.04
188 189 1.557371 CCTCCCCTCACTTTTCCTCTC 59.443 57.143 0.00 0.00 0.00 3.20
189 190 1.132365 ACCTCCCCTCACTTTTCCTCT 60.132 52.381 0.00 0.00 0.00 3.69
190 191 1.363246 ACCTCCCCTCACTTTTCCTC 58.637 55.000 0.00 0.00 0.00 3.71
191 192 2.643304 GTTACCTCCCCTCACTTTTCCT 59.357 50.000 0.00 0.00 0.00 3.36
192 193 2.614734 CGTTACCTCCCCTCACTTTTCC 60.615 54.545 0.00 0.00 0.00 3.13
193 194 2.301009 TCGTTACCTCCCCTCACTTTTC 59.699 50.000 0.00 0.00 0.00 2.29
194 195 2.302157 CTCGTTACCTCCCCTCACTTTT 59.698 50.000 0.00 0.00 0.00 2.27
195 196 1.900486 CTCGTTACCTCCCCTCACTTT 59.100 52.381 0.00 0.00 0.00 2.66
196 197 1.558233 CTCGTTACCTCCCCTCACTT 58.442 55.000 0.00 0.00 0.00 3.16
197 198 0.971447 GCTCGTTACCTCCCCTCACT 60.971 60.000 0.00 0.00 0.00 3.41
198 199 1.516423 GCTCGTTACCTCCCCTCAC 59.484 63.158 0.00 0.00 0.00 3.51
199 200 2.050350 CGCTCGTTACCTCCCCTCA 61.050 63.158 0.00 0.00 0.00 3.86
200 201 1.726533 CTCGCTCGTTACCTCCCCTC 61.727 65.000 0.00 0.00 0.00 4.30
201 202 1.753463 CTCGCTCGTTACCTCCCCT 60.753 63.158 0.00 0.00 0.00 4.79
202 203 1.318158 TTCTCGCTCGTTACCTCCCC 61.318 60.000 0.00 0.00 0.00 4.81
203 204 0.100861 CTTCTCGCTCGTTACCTCCC 59.899 60.000 0.00 0.00 0.00 4.30
204 205 1.093159 TCTTCTCGCTCGTTACCTCC 58.907 55.000 0.00 0.00 0.00 4.30
205 206 2.915738 TTCTTCTCGCTCGTTACCTC 57.084 50.000 0.00 0.00 0.00 3.85
206 207 3.315418 GTTTTCTTCTCGCTCGTTACCT 58.685 45.455 0.00 0.00 0.00 3.08
207 208 2.090195 CGTTTTCTTCTCGCTCGTTACC 59.910 50.000 0.00 0.00 0.00 2.85
208 209 2.975851 TCGTTTTCTTCTCGCTCGTTAC 59.024 45.455 0.00 0.00 0.00 2.50
209 210 3.272439 TCGTTTTCTTCTCGCTCGTTA 57.728 42.857 0.00 0.00 0.00 3.18
210 211 2.129823 TCGTTTTCTTCTCGCTCGTT 57.870 45.000 0.00 0.00 0.00 3.85
211 212 2.349297 ATCGTTTTCTTCTCGCTCGT 57.651 45.000 0.00 0.00 0.00 4.18
212 213 2.283951 CGAATCGTTTTCTTCTCGCTCG 60.284 50.000 0.00 0.00 0.00 5.03
213 214 2.028165 CCGAATCGTTTTCTTCTCGCTC 59.972 50.000 0.82 0.00 0.00 5.03
214 215 1.993370 CCGAATCGTTTTCTTCTCGCT 59.007 47.619 0.82 0.00 0.00 4.93
215 216 1.725164 ACCGAATCGTTTTCTTCTCGC 59.275 47.619 0.82 0.00 0.00 5.03
216 217 2.984471 TCACCGAATCGTTTTCTTCTCG 59.016 45.455 0.82 0.00 0.00 4.04
217 218 4.235360 TCTCACCGAATCGTTTTCTTCTC 58.765 43.478 0.82 0.00 0.00 2.87
218 219 4.238514 CTCTCACCGAATCGTTTTCTTCT 58.761 43.478 0.82 0.00 0.00 2.85
219 220 3.368236 CCTCTCACCGAATCGTTTTCTTC 59.632 47.826 0.82 0.00 0.00 2.87
220 221 3.326747 CCTCTCACCGAATCGTTTTCTT 58.673 45.455 0.82 0.00 0.00 2.52
221 222 2.931320 GCCTCTCACCGAATCGTTTTCT 60.931 50.000 0.82 0.00 0.00 2.52
222 223 1.393883 GCCTCTCACCGAATCGTTTTC 59.606 52.381 0.82 0.00 0.00 2.29
223 224 1.002087 AGCCTCTCACCGAATCGTTTT 59.998 47.619 0.82 0.00 0.00 2.43
224 225 0.608640 AGCCTCTCACCGAATCGTTT 59.391 50.000 0.82 0.00 0.00 3.60
225 226 1.471119 TAGCCTCTCACCGAATCGTT 58.529 50.000 0.82 0.00 0.00 3.85
226 227 1.609555 GATAGCCTCTCACCGAATCGT 59.390 52.381 0.82 0.00 0.00 3.73
227 228 1.400371 CGATAGCCTCTCACCGAATCG 60.400 57.143 0.00 0.00 0.00 3.34
228 229 2.339728 CGATAGCCTCTCACCGAATC 57.660 55.000 0.00 0.00 0.00 2.52
242 243 0.866061 CCGTTCGGTCTGTGCGATAG 60.866 60.000 2.82 0.00 0.00 2.08
243 244 1.138036 CCGTTCGGTCTGTGCGATA 59.862 57.895 2.82 0.00 0.00 2.92
244 245 2.126071 CCGTTCGGTCTGTGCGAT 60.126 61.111 2.82 0.00 0.00 4.58
245 246 4.351938 CCCGTTCGGTCTGTGCGA 62.352 66.667 10.36 0.00 0.00 5.10
246 247 3.642778 ATCCCGTTCGGTCTGTGCG 62.643 63.158 10.36 0.00 0.00 5.34
247 248 2.100631 CATCCCGTTCGGTCTGTGC 61.101 63.158 10.36 0.00 0.00 4.57
248 249 2.100631 GCATCCCGTTCGGTCTGTG 61.101 63.158 10.36 4.71 0.00 3.66
249 250 2.264794 GCATCCCGTTCGGTCTGT 59.735 61.111 10.36 0.00 0.00 3.41
250 251 2.511600 GGCATCCCGTTCGGTCTG 60.512 66.667 10.36 7.95 0.00 3.51
251 252 3.782443 GGGCATCCCGTTCGGTCT 61.782 66.667 10.36 0.00 32.13 3.85
260 261 2.436646 CGCGGATATGGGCATCCC 60.437 66.667 0.00 0.00 45.71 3.85
261 262 1.448540 CTCGCGGATATGGGCATCC 60.449 63.158 6.13 0.00 41.06 3.51
262 263 0.320771 AACTCGCGGATATGGGCATC 60.321 55.000 6.13 0.00 0.00 3.91
263 264 0.108585 AAACTCGCGGATATGGGCAT 59.891 50.000 6.13 0.00 0.00 4.40
264 265 0.107410 AAAACTCGCGGATATGGGCA 60.107 50.000 6.13 0.00 0.00 5.36
265 266 1.021968 AAAAACTCGCGGATATGGGC 58.978 50.000 6.13 0.00 0.00 5.36
266 267 1.333619 CCAAAAACTCGCGGATATGGG 59.666 52.381 6.13 0.00 0.00 4.00
267 268 1.268539 GCCAAAAACTCGCGGATATGG 60.269 52.381 6.13 9.14 0.00 2.74
268 269 1.594518 CGCCAAAAACTCGCGGATATG 60.595 52.381 6.13 0.00 42.14 1.78
269 270 0.655733 CGCCAAAAACTCGCGGATAT 59.344 50.000 6.13 0.00 42.14 1.63
270 271 2.083183 CGCCAAAAACTCGCGGATA 58.917 52.632 6.13 0.00 42.14 2.59
271 272 2.867472 CGCCAAAAACTCGCGGAT 59.133 55.556 6.13 0.00 42.14 4.18
274 275 2.127383 GTCCGCCAAAAACTCGCG 60.127 61.111 0.00 0.00 45.32 5.87
275 276 2.127383 CGTCCGCCAAAAACTCGC 60.127 61.111 0.00 0.00 0.00 5.03
276 277 1.491563 CTCGTCCGCCAAAAACTCG 59.508 57.895 0.00 0.00 0.00 4.18
277 278 1.206831 GCTCGTCCGCCAAAAACTC 59.793 57.895 0.00 0.00 0.00 3.01
278 279 2.604174 CGCTCGTCCGCCAAAAACT 61.604 57.895 0.00 0.00 0.00 2.66
279 280 2.127383 CGCTCGTCCGCCAAAAAC 60.127 61.111 0.00 0.00 0.00 2.43
280 281 3.350612 CCGCTCGTCCGCCAAAAA 61.351 61.111 0.00 0.00 0.00 1.94
281 282 4.302509 TCCGCTCGTCCGCCAAAA 62.303 61.111 0.00 0.00 0.00 2.44
282 283 4.735132 CTCCGCTCGTCCGCCAAA 62.735 66.667 0.00 0.00 0.00 3.28
287 288 3.471244 CTTAGGCTCCGCTCGTCCG 62.471 68.421 0.00 0.00 0.00 4.79
288 289 1.946475 AACTTAGGCTCCGCTCGTCC 61.946 60.000 0.00 0.00 0.00 4.79
289 290 0.108756 AAACTTAGGCTCCGCTCGTC 60.109 55.000 0.00 0.00 0.00 4.20
290 291 0.108756 GAAACTTAGGCTCCGCTCGT 60.109 55.000 0.00 0.00 0.00 4.18
291 292 0.108804 TGAAACTTAGGCTCCGCTCG 60.109 55.000 0.00 0.00 0.00 5.03
292 293 1.936547 CATGAAACTTAGGCTCCGCTC 59.063 52.381 0.00 0.00 0.00 5.03
293 294 1.407437 CCATGAAACTTAGGCTCCGCT 60.407 52.381 0.00 0.00 0.00 5.52
294 295 1.017387 CCATGAAACTTAGGCTCCGC 58.983 55.000 0.00 0.00 0.00 5.54
295 296 2.691409 TCCATGAAACTTAGGCTCCG 57.309 50.000 0.00 0.00 0.00 4.63
296 297 6.207614 GGAATATTCCATGAAACTTAGGCTCC 59.792 42.308 26.61 0.00 46.76 4.70
297 298 7.208225 GGAATATTCCATGAAACTTAGGCTC 57.792 40.000 26.61 0.00 46.76 4.70
313 314 6.319658 TCAGCAACCAGATTCTTGGAATATTC 59.680 38.462 6.93 6.93 40.87 1.75
314 315 6.189859 TCAGCAACCAGATTCTTGGAATATT 58.810 36.000 8.56 0.00 40.87 1.28
315 316 5.759059 TCAGCAACCAGATTCTTGGAATAT 58.241 37.500 8.56 0.00 40.87 1.28
316 317 5.178096 TCAGCAACCAGATTCTTGGAATA 57.822 39.130 8.56 0.00 40.87 1.75
317 318 4.038271 TCAGCAACCAGATTCTTGGAAT 57.962 40.909 8.56 0.00 40.87 3.01
318 319 3.507162 TCAGCAACCAGATTCTTGGAA 57.493 42.857 8.56 0.00 40.87 3.53
319 320 3.726557 ATCAGCAACCAGATTCTTGGA 57.273 42.857 8.56 0.00 40.87 3.53
320 321 4.518211 GGATATCAGCAACCAGATTCTTGG 59.482 45.833 4.83 1.90 44.09 3.61
321 322 4.518211 GGGATATCAGCAACCAGATTCTTG 59.482 45.833 4.83 0.00 0.00 3.02
322 323 4.414846 AGGGATATCAGCAACCAGATTCTT 59.585 41.667 4.83 0.00 0.00 2.52
323 324 3.979347 AGGGATATCAGCAACCAGATTCT 59.021 43.478 4.83 0.00 0.00 2.40
324 325 4.322567 GAGGGATATCAGCAACCAGATTC 58.677 47.826 4.83 0.00 0.00 2.52
325 326 3.073650 GGAGGGATATCAGCAACCAGATT 59.926 47.826 4.83 0.00 0.00 2.40
326 327 2.641815 GGAGGGATATCAGCAACCAGAT 59.358 50.000 4.83 0.00 0.00 2.90
327 328 2.050144 GGAGGGATATCAGCAACCAGA 58.950 52.381 4.83 0.00 0.00 3.86
328 329 2.038295 GAGGAGGGATATCAGCAACCAG 59.962 54.545 4.83 0.00 0.00 4.00
329 330 2.050144 GAGGAGGGATATCAGCAACCA 58.950 52.381 4.83 0.00 0.00 3.67
330 331 1.001406 CGAGGAGGGATATCAGCAACC 59.999 57.143 4.83 0.00 0.00 3.77
331 332 1.689273 ACGAGGAGGGATATCAGCAAC 59.311 52.381 4.83 0.00 0.00 4.17
332 333 1.964223 GACGAGGAGGGATATCAGCAA 59.036 52.381 4.83 0.00 0.00 3.91
333 334 1.621992 GACGAGGAGGGATATCAGCA 58.378 55.000 4.83 0.00 0.00 4.41
334 335 0.892063 GGACGAGGAGGGATATCAGC 59.108 60.000 4.83 0.00 0.00 4.26
335 336 2.294449 TGGACGAGGAGGGATATCAG 57.706 55.000 4.83 0.00 0.00 2.90
336 337 4.397919 TTATGGACGAGGAGGGATATCA 57.602 45.455 4.83 0.00 0.00 2.15
337 338 4.081586 GGTTTATGGACGAGGAGGGATATC 60.082 50.000 0.00 0.00 0.00 1.63
338 339 3.838903 GGTTTATGGACGAGGAGGGATAT 59.161 47.826 0.00 0.00 0.00 1.63
339 340 3.236896 GGTTTATGGACGAGGAGGGATA 58.763 50.000 0.00 0.00 0.00 2.59
340 341 2.047830 GGTTTATGGACGAGGAGGGAT 58.952 52.381 0.00 0.00 0.00 3.85
341 342 1.273381 TGGTTTATGGACGAGGAGGGA 60.273 52.381 0.00 0.00 0.00 4.20
342 343 1.200519 TGGTTTATGGACGAGGAGGG 58.799 55.000 0.00 0.00 0.00 4.30
343 344 3.007635 GTTTGGTTTATGGACGAGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
344 345 3.670625 TGTTTGGTTTATGGACGAGGAG 58.329 45.455 0.00 0.00 0.00 3.69
345 346 3.670625 CTGTTTGGTTTATGGACGAGGA 58.329 45.455 0.00 0.00 0.00 3.71
346 347 2.161609 GCTGTTTGGTTTATGGACGAGG 59.838 50.000 0.00 0.00 0.00 4.63
347 348 3.074412 AGCTGTTTGGTTTATGGACGAG 58.926 45.455 0.00 0.00 0.00 4.18
348 349 2.811431 CAGCTGTTTGGTTTATGGACGA 59.189 45.455 5.25 0.00 0.00 4.20
349 350 2.095263 CCAGCTGTTTGGTTTATGGACG 60.095 50.000 13.81 0.00 33.38 4.79
350 351 3.575965 CCAGCTGTTTGGTTTATGGAC 57.424 47.619 13.81 0.00 33.38 4.02
380 381 9.869757 CTCCATAAAATTAAATCTCCCGTTTTT 57.130 29.630 0.00 0.00 0.00 1.94
381 382 8.474831 CCTCCATAAAATTAAATCTCCCGTTTT 58.525 33.333 0.00 0.00 0.00 2.43
382 383 7.837187 TCCTCCATAAAATTAAATCTCCCGTTT 59.163 33.333 0.00 0.00 0.00 3.60
383 384 7.351166 TCCTCCATAAAATTAAATCTCCCGTT 58.649 34.615 0.00 0.00 0.00 4.44
384 385 6.906848 TCCTCCATAAAATTAAATCTCCCGT 58.093 36.000 0.00 0.00 0.00 5.28
468 471 6.474102 TGTTGGACTTTTCGAAAAAGTTATGC 59.526 34.615 22.67 12.12 40.27 3.14
469 472 7.979115 TGTTGGACTTTTCGAAAAAGTTATG 57.021 32.000 22.67 13.02 40.27 1.90
474 477 6.033341 TGTGATGTTGGACTTTTCGAAAAAG 58.967 36.000 22.67 18.01 0.00 2.27
663 669 8.581578 TCCGTTTCATATTGTAGTGCATATAGA 58.418 33.333 0.00 0.00 0.00 1.98
664 670 8.757164 TCCGTTTCATATTGTAGTGCATATAG 57.243 34.615 0.00 0.00 0.00 1.31
739 749 3.758554 ACGTTGAAATCAATCCAAGAGGG 59.241 43.478 0.00 0.00 38.24 4.30
874 886 2.738521 CACGAGGTCAAGGGTGCG 60.739 66.667 0.00 0.00 0.00 5.34
878 890 2.232298 GAGGAGCACGAGGTCAAGGG 62.232 65.000 13.90 0.00 43.97 3.95
890 902 2.244117 GACGGCATTGGAGAGGAGCA 62.244 60.000 0.00 0.00 0.00 4.26
896 908 0.036388 GAAGTGGACGGCATTGGAGA 60.036 55.000 0.00 0.00 0.00 3.71
917 929 0.179169 GTGGAGAAGTAGTCGTCGGC 60.179 60.000 0.00 0.00 0.00 5.54
968 980 2.602322 GCGAGCAATGGGAGCGATC 61.602 63.158 0.00 0.00 37.01 3.69
1026 1041 1.306970 GAGGAGGAGGAGGACCGAA 59.693 63.158 0.00 0.00 41.83 4.30
1209 1230 4.668118 GTGGCGACGTCCCGGAAA 62.668 66.667 10.58 0.00 0.00 3.13
1252 1273 2.577059 GATGGCGACCACGAAGGA 59.423 61.111 5.70 0.00 42.66 3.36
1872 1899 2.100631 CGGCGGCATCGTTCTCTTT 61.101 57.895 10.53 0.00 38.89 2.52
1923 1950 1.142748 CAGGAGCAGGATCACGACC 59.857 63.158 0.00 0.00 0.00 4.79
2013 2069 2.224818 CCTATGAGGGCCGTACTCTACT 60.225 54.545 0.00 0.00 35.98 2.57
2019 2078 1.546476 CTGATCCTATGAGGGCCGTAC 59.454 57.143 0.00 0.00 35.59 3.67
2031 2090 3.898123 GCAGGTCCTTGTATCTGATCCTA 59.102 47.826 0.00 0.00 0.00 2.94
2040 2099 0.464373 CGCCATGCAGGTCCTTGTAT 60.464 55.000 0.00 0.00 40.61 2.29
2055 2114 1.365633 GAAACCATTTGTGGCGCCA 59.634 52.632 29.03 29.03 0.00 5.69
2057 2116 1.732683 CGGAAACCATTTGTGGCGC 60.733 57.895 0.00 0.00 0.00 6.53
2064 2123 0.250553 TGAGGTCGCGGAAACCATTT 60.251 50.000 16.76 0.00 39.39 2.32
2145 2204 1.215382 CGAGATCACCTTGACGGCA 59.785 57.895 0.00 0.00 35.61 5.69
2232 2291 0.690762 GGAGGAGTTGCACCAGGTTA 59.309 55.000 0.00 0.00 0.00 2.85
2244 2303 1.682684 CCGGCAGTAGTGGAGGAGT 60.683 63.158 0.00 0.00 0.00 3.85
2301 2360 3.842925 TTGGTCCAGGCTGCCGTTC 62.843 63.158 13.96 5.41 0.00 3.95
2361 2426 4.891727 CGGACGATCTTGGCCCGG 62.892 72.222 0.00 0.00 36.81 5.73
2658 2723 0.616395 TGAATACCACAGGCCTCCGA 60.616 55.000 0.00 0.00 0.00 4.55
2667 2732 5.105797 GGAATCATTGTTGCTGAATACCACA 60.106 40.000 0.00 0.00 0.00 4.17
2916 2981 1.047002 CTCCAAGATCCTCTGGCGAT 58.953 55.000 1.93 0.00 0.00 4.58
2922 2987 2.244486 TGCTGTCTCCAAGATCCTCT 57.756 50.000 0.00 0.00 0.00 3.69
2974 3039 1.450531 AACGACACTCCGACGAACCT 61.451 55.000 0.00 0.00 36.58 3.50
3072 3137 5.741388 TTGAAGAGAACTTTCAGCTGAAC 57.259 39.130 28.46 16.75 36.39 3.18
3159 3224 1.739466 GTCGATGCCTGCAATTCTGAA 59.261 47.619 0.00 0.00 0.00 3.02
3293 3358 2.611518 CGTCTCCCTGTAAAGCTCTTG 58.388 52.381 0.00 0.00 0.00 3.02
3383 3448 3.698040 AGTGAATGGAAATGCCTGATGAC 59.302 43.478 0.00 0.00 37.63 3.06
3387 3452 4.038271 AGAAGTGAATGGAAATGCCTGA 57.962 40.909 0.00 0.00 37.63 3.86
3564 3629 1.671556 GGTGGCGCCAACCAATTTAAG 60.672 52.381 34.88 0.00 42.70 1.85
3584 3649 4.389992 ACAGATGTATGAACAAGCTGAACG 59.610 41.667 14.64 0.00 41.21 3.95
3591 3656 5.179368 ACCGTTTGACAGATGTATGAACAAG 59.821 40.000 0.00 0.00 39.58 3.16
3668 3733 7.272978 TGGTACTAGAATTGTTATCTCCTTGC 58.727 38.462 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.