Multiple sequence alignment - TraesCS5D01G498000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G498000 chr5D 100.000 2660 0 0 1 2660 528122144 528119485 0.000000e+00 4913.0
1 TraesCS5D01G498000 chr5D 94.981 259 13 0 2402 2660 547816569 547816827 8.860000e-110 407.0
2 TraesCS5D01G498000 chr5D 94.615 260 13 1 2402 2660 23718138 23718397 4.120000e-108 401.0
3 TraesCS5D01G498000 chr5D 83.200 375 44 11 465 837 528051252 528050895 2.550000e-85 326.0
4 TraesCS5D01G498000 chr5D 82.847 274 36 5 465 736 528031208 528030944 4.430000e-58 235.0
5 TraesCS5D01G498000 chr5D 84.753 223 23 8 1904 2122 79112974 79112759 2.070000e-51 213.0
6 TraesCS5D01G498000 chr5D 100.000 57 0 0 323 379 528121738 528121682 3.620000e-19 106.0
7 TraesCS5D01G498000 chr5D 100.000 57 0 0 407 463 528121822 528121766 3.620000e-19 106.0
8 TraesCS5D01G498000 chr5A 90.270 925 41 17 993 1896 655717804 655716908 0.000000e+00 1164.0
9 TraesCS5D01G498000 chr5A 90.270 925 41 17 993 1896 655862922 655862026 0.000000e+00 1164.0
10 TraesCS5D01G498000 chr5A 90.054 925 43 17 993 1896 655790370 655789474 0.000000e+00 1153.0
11 TraesCS5D01G498000 chr5A 88.960 933 43 16 907 1827 655925029 655924145 0.000000e+00 1098.0
12 TraesCS5D01G498000 chr5A 82.405 790 81 29 552 1305 655646140 655645373 1.040000e-178 636.0
13 TraesCS5D01G498000 chr5A 82.152 790 83 27 552 1305 655799806 655799039 2.250000e-175 625.0
14 TraesCS5D01G498000 chr5A 82.025 790 84 27 552 1305 655728702 655727935 1.050000e-173 619.0
15 TraesCS5D01G498000 chr5A 84.448 643 52 19 681 1305 655871844 655871232 8.200000e-165 590.0
16 TraesCS5D01G498000 chr5A 88.968 281 30 1 2116 2396 655797593 655797314 1.960000e-91 346.0
17 TraesCS5D01G498000 chr5A 87.900 281 33 1 2116 2396 655726484 655726205 1.970000e-86 329.0
18 TraesCS5D01G498000 chr5A 89.671 213 20 2 1905 2115 24193209 24193421 1.210000e-68 270.0
19 TraesCS5D01G498000 chr5A 95.270 148 6 1 1726 1872 655727323 655727176 1.590000e-57 233.0
20 TraesCS5D01G498000 chr5A 86.667 210 26 2 1907 2115 3952276 3952068 5.730000e-57 231.0
21 TraesCS5D01G498000 chr5A 94.558 147 7 1 1726 1871 655798430 655798284 2.660000e-55 226.0
22 TraesCS5D01G498000 chr5A 85.973 221 16 10 615 835 655925243 655925038 3.450000e-54 222.0
23 TraesCS5D01G498000 chr5A 87.958 191 15 4 226 408 655926252 655926062 4.460000e-53 219.0
24 TraesCS5D01G498000 chr5A 93.793 145 7 2 1726 1869 655870623 655870480 1.600000e-52 217.0
25 TraesCS5D01G498000 chr5A 83.069 189 24 4 228 408 655718479 655718291 5.890000e-37 165.0
26 TraesCS5D01G498000 chr5A 81.633 196 27 5 228 414 655791045 655790850 1.280000e-33 154.0
27 TraesCS5D01G498000 chr5A 81.633 196 27 5 228 414 655863597 655863402 1.280000e-33 154.0
28 TraesCS5D01G498000 chr5A 94.643 56 1 2 1841 1896 655923990 655923937 4.720000e-13 86.1
29 TraesCS5D01G498000 chr5A 92.308 52 1 2 1859 1907 655726522 655726471 1.320000e-08 71.3
30 TraesCS5D01G498000 chr5A 92.308 52 1 2 1859 1907 655869827 655869776 1.320000e-08 71.3
31 TraesCS5D01G498000 chr5A 88.710 62 2 1 407 463 655926154 655926093 1.320000e-08 71.3
32 TraesCS5D01G498000 chr5B 82.744 1188 113 42 226 1398 664806359 664805249 0.000000e+00 974.0
33 TraesCS5D01G498000 chr5B 81.872 1186 117 48 226 1398 664910531 664909431 0.000000e+00 909.0
34 TraesCS5D01G498000 chr5B 86.473 791 60 21 615 1398 664940348 664939598 0.000000e+00 824.0
35 TraesCS5D01G498000 chr5B 89.725 545 31 10 1349 1874 664805139 664804601 0.000000e+00 673.0
36 TraesCS5D01G498000 chr5B 90.141 497 31 9 1346 1831 664909375 664908886 4.830000e-177 630.0
37 TraesCS5D01G498000 chr5B 88.324 531 30 12 763 1293 664873967 664873469 2.260000e-170 608.0
38 TraesCS5D01G498000 chr5B 93.862 391 21 2 1349 1739 664939488 664939101 1.060000e-163 586.0
39 TraesCS5D01G498000 chr5B 81.373 306 45 7 1385 1690 664727086 664726793 3.420000e-59 239.0
40 TraesCS5D01G498000 chr5B 86.026 229 25 5 3 228 664806612 664806388 3.420000e-59 239.0
41 TraesCS5D01G498000 chr5B 86.026 229 24 6 3 228 664910783 664910560 3.420000e-59 239.0
42 TraesCS5D01G498000 chr5B 84.459 148 9 5 1736 1874 664895862 664895720 1.660000e-27 134.0
43 TraesCS5D01G498000 chr5B 94.737 57 3 0 1346 1402 664805193 664805137 3.650000e-14 89.8
44 TraesCS5D01G498000 chr5B 94.737 57 3 0 1346 1402 664939542 664939486 3.650000e-14 89.8
45 TraesCS5D01G498000 chrUn 82.763 847 82 40 465 1305 268244465 268243677 0.000000e+00 697.0
46 TraesCS5D01G498000 chrUn 82.847 274 36 5 465 736 357665906 357665642 4.430000e-58 235.0
47 TraesCS5D01G498000 chrUn 89.655 174 12 3 758 929 405885820 405885989 1.600000e-52 217.0
48 TraesCS5D01G498000 chrUn 81.373 102 18 1 228 328 420941564 420941665 6.100000e-12 82.4
49 TraesCS5D01G498000 chr3D 96.198 263 9 1 2399 2660 606581523 606581785 1.890000e-116 429.0
50 TraesCS5D01G498000 chr3D 95.019 261 11 2 2402 2660 9649423 9649163 2.460000e-110 409.0
51 TraesCS5D01G498000 chr3D 89.372 207 16 3 1905 2110 416561703 416561502 3.400000e-64 255.0
52 TraesCS5D01G498000 chr7D 95.849 265 8 2 2398 2660 596303171 596302908 2.450000e-115 425.0
53 TraesCS5D01G498000 chr7D 85.915 213 21 7 1906 2115 8193730 8193524 4.460000e-53 219.0
54 TraesCS5D01G498000 chr7D 76.438 365 51 19 3 339 503010749 503011106 5.890000e-37 165.0
55 TraesCS5D01G498000 chr4D 95.753 259 10 1 2402 2660 409181221 409180964 1.470000e-112 416.0
56 TraesCS5D01G498000 chr4A 94.615 260 12 2 2402 2660 112517923 112517665 4.120000e-108 401.0
57 TraesCS5D01G498000 chr6D 94.275 262 11 2 2402 2660 32078270 32078010 5.340000e-107 398.0
58 TraesCS5D01G498000 chr6D 85.185 216 17 12 1906 2115 437151350 437151556 9.650000e-50 207.0
59 TraesCS5D01G498000 chr2D 93.284 268 16 2 2395 2660 81492361 81492628 6.900000e-106 394.0
60 TraesCS5D01G498000 chr2D 89.558 249 25 1 2153 2400 373882032 373881784 5.530000e-82 315.0
61 TraesCS5D01G498000 chr6B 90.079 252 21 2 1418 1668 644446513 644446265 9.180000e-85 324.0
62 TraesCS5D01G498000 chr6B 91.358 81 6 1 2153 2233 714813838 714813759 2.800000e-20 110.0
63 TraesCS5D01G498000 chr6B 89.583 48 5 0 993 1040 644447353 644447306 7.950000e-06 62.1
64 TraesCS5D01G498000 chr1D 91.943 211 14 3 1906 2115 342499076 342498868 2.590000e-75 292.0
65 TraesCS5D01G498000 chr1D 87.678 211 20 5 1908 2115 455550277 455550484 9.510000e-60 241.0
66 TraesCS5D01G498000 chr2B 89.655 203 18 2 1907 2108 741112718 741112518 3.400000e-64 255.0
67 TraesCS5D01G498000 chr2A 82.684 231 31 7 3 228 624369080 624369306 2.090000e-46 196.0
68 TraesCS5D01G498000 chr7A 76.648 364 52 23 3 338 570144522 570144880 1.270000e-38 171.0
69 TraesCS5D01G498000 chr3B 90.278 72 5 2 157 227 241903090 241903160 2.820000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G498000 chr5D 528119485 528122144 2659 True 1708.333333 4913 100.000000 1 2660 3 chr5D.!!$R4 2659
1 TraesCS5D01G498000 chr5A 655716908 655718479 1571 True 664.500000 1164 86.669500 228 1896 2 chr5A.!!$R3 1668
2 TraesCS5D01G498000 chr5A 655862026 655863597 1571 True 659.000000 1164 85.951500 228 1896 2 chr5A.!!$R7 1668
3 TraesCS5D01G498000 chr5A 655789474 655791045 1571 True 653.500000 1153 85.843500 228 1896 2 chr5A.!!$R5 1668
4 TraesCS5D01G498000 chr5A 655645373 655646140 767 True 636.000000 636 82.405000 552 1305 1 chr5A.!!$R2 753
5 TraesCS5D01G498000 chr5A 655797314 655799806 2492 True 399.000000 625 88.559333 552 2396 3 chr5A.!!$R6 1844
6 TraesCS5D01G498000 chr5A 655923937 655926252 2315 True 339.280000 1098 89.248800 226 1896 5 chr5A.!!$R9 1670
7 TraesCS5D01G498000 chr5A 655726205 655728702 2497 True 313.075000 619 89.375750 552 2396 4 chr5A.!!$R4 1844
8 TraesCS5D01G498000 chr5A 655869776 655871844 2068 True 292.766667 590 90.183000 681 1907 3 chr5A.!!$R8 1226
9 TraesCS5D01G498000 chr5B 664908886 664910783 1897 True 592.666667 909 86.013000 3 1831 3 chr5B.!!$R5 1828
10 TraesCS5D01G498000 chr5B 664939101 664940348 1247 True 499.933333 824 91.690667 615 1739 3 chr5B.!!$R6 1124
11 TraesCS5D01G498000 chr5B 664804601 664806612 2011 True 493.950000 974 88.308000 3 1874 4 chr5B.!!$R4 1871
12 TraesCS5D01G498000 chrUn 268243677 268244465 788 True 697.000000 697 82.763000 465 1305 1 chrUn.!!$R1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 468 0.033504 AGTGTGCGGATGAACTTCGT 59.966 50.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 4238 0.036388 TCACAAAGGTCCGGCAGATC 60.036 55.0 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.221771 ACTTTGCATCCTACAACTTGCA 58.778 40.909 0.00 0.00 42.90 4.08
47 48 1.135972 GCATCCTACAACTTGCACACG 60.136 52.381 0.00 0.00 35.22 4.49
52 53 1.390123 CTACAACTTGCACACGATCCG 59.610 52.381 0.00 0.00 0.00 4.18
70 71 2.884012 TCCGTGAATGCAATGTGAAGTT 59.116 40.909 0.00 0.00 0.00 2.66
79 80 2.161855 CAATGTGAAGTTGCTAGCCCA 58.838 47.619 13.29 0.00 0.00 5.36
80 81 2.756760 CAATGTGAAGTTGCTAGCCCAT 59.243 45.455 13.29 0.00 0.00 4.00
117 118 3.585862 TCTCAAACTCCGCATGAAGTAC 58.414 45.455 0.00 0.00 0.00 2.73
127 128 0.723414 CATGAAGTACTGCAGTGCGG 59.277 55.000 29.57 22.58 41.29 5.69
145 146 0.608035 GGTCGCATGGGTGGAAAGAA 60.608 55.000 9.86 0.00 0.00 2.52
147 148 0.322456 TCGCATGGGTGGAAAGAAGG 60.322 55.000 9.86 0.00 0.00 3.46
151 152 1.158007 ATGGGTGGAAAGAAGGTGGT 58.842 50.000 0.00 0.00 0.00 4.16
154 157 0.476771 GGTGGAAAGAAGGTGGTCCA 59.523 55.000 0.00 0.00 37.83 4.02
155 158 1.133606 GGTGGAAAGAAGGTGGTCCAA 60.134 52.381 0.00 0.00 41.72 3.53
158 161 0.591659 GAAAGAAGGTGGTCCAACGC 59.408 55.000 0.00 0.00 35.89 4.84
159 162 1.164041 AAAGAAGGTGGTCCAACGCG 61.164 55.000 3.53 3.53 35.89 6.01
166 169 1.069935 TGGTCCAACGCGTCAATCA 59.930 52.632 14.44 4.57 0.00 2.57
169 172 0.096976 GTCCAACGCGTCAATCATGG 59.903 55.000 14.44 16.21 0.00 3.66
175 178 0.780596 CGCGTCAATCATGGAGATCG 59.219 55.000 0.00 0.00 35.39 3.69
179 182 3.426859 GCGTCAATCATGGAGATCGTAAG 59.573 47.826 0.00 0.00 35.39 2.34
214 218 3.472652 TGCTCTACGTGTTGGTCAATTT 58.527 40.909 0.00 0.00 0.00 1.82
254 290 1.084370 GTATATCCGGATGCGCTGCC 61.084 60.000 27.55 9.16 0.00 4.85
278 314 2.742053 CCTGTATCAAACAACGGAGGTG 59.258 50.000 0.00 0.00 37.74 4.00
317 353 3.833650 TGCATTGTTGGATGAAGGTCAAT 59.166 39.130 0.00 0.00 0.00 2.57
414 455 6.885735 AATTAAACTTGTTGAACAGTGTGC 57.114 33.333 0.00 0.00 0.00 4.57
415 456 2.542766 AACTTGTTGAACAGTGTGCG 57.457 45.000 0.00 0.00 0.00 5.34
417 458 1.013596 CTTGTTGAACAGTGTGCGGA 58.986 50.000 0.00 0.00 0.00 5.54
419 460 0.943673 TGTTGAACAGTGTGCGGATG 59.056 50.000 0.00 0.00 0.00 3.51
420 461 1.225855 GTTGAACAGTGTGCGGATGA 58.774 50.000 0.00 0.00 0.00 2.92
421 462 1.601903 GTTGAACAGTGTGCGGATGAA 59.398 47.619 0.00 0.00 0.00 2.57
422 463 1.225855 TGAACAGTGTGCGGATGAAC 58.774 50.000 0.00 0.00 0.00 3.18
424 465 1.873591 GAACAGTGTGCGGATGAACTT 59.126 47.619 0.00 0.00 0.00 2.66
426 467 0.439985 CAGTGTGCGGATGAACTTCG 59.560 55.000 0.00 0.00 0.00 3.79
427 468 0.033504 AGTGTGCGGATGAACTTCGT 59.966 50.000 0.00 0.00 0.00 3.85
428 469 0.163788 GTGTGCGGATGAACTTCGTG 59.836 55.000 0.00 0.00 0.00 4.35
429 470 1.132640 GTGCGGATGAACTTCGTGC 59.867 57.895 0.00 0.00 0.00 5.34
430 471 2.032634 TGCGGATGAACTTCGTGCC 61.033 57.895 0.00 0.00 0.00 5.01
431 472 2.750888 GCGGATGAACTTCGTGCCC 61.751 63.158 0.00 0.00 0.00 5.36
433 474 0.174845 CGGATGAACTTCGTGCCCTA 59.825 55.000 0.00 0.00 0.00 3.53
434 475 1.653151 GGATGAACTTCGTGCCCTAC 58.347 55.000 0.00 0.00 0.00 3.18
435 476 1.066430 GGATGAACTTCGTGCCCTACA 60.066 52.381 0.00 0.00 0.00 2.74
436 477 2.614481 GGATGAACTTCGTGCCCTACAA 60.614 50.000 0.00 0.00 0.00 2.41
437 478 1.873698 TGAACTTCGTGCCCTACAAC 58.126 50.000 0.00 0.00 0.00 3.32
438 479 1.414919 TGAACTTCGTGCCCTACAACT 59.585 47.619 0.00 0.00 0.00 3.16
439 480 2.158871 TGAACTTCGTGCCCTACAACTT 60.159 45.455 0.00 0.00 0.00 2.66
440 481 1.878953 ACTTCGTGCCCTACAACTTG 58.121 50.000 0.00 0.00 0.00 3.16
441 482 1.140252 ACTTCGTGCCCTACAACTTGT 59.860 47.619 0.00 0.00 0.00 3.16
442 483 2.218603 CTTCGTGCCCTACAACTTGTT 58.781 47.619 0.00 0.00 0.00 2.83
443 484 1.588674 TCGTGCCCTACAACTTGTTG 58.411 50.000 11.44 11.44 0.00 3.33
444 485 1.139256 TCGTGCCCTACAACTTGTTGA 59.861 47.619 18.82 3.65 0.00 3.18
445 486 1.944024 CGTGCCCTACAACTTGTTGAA 59.056 47.619 18.82 0.00 0.00 2.69
446 487 2.286772 CGTGCCCTACAACTTGTTGAAC 60.287 50.000 18.82 0.00 0.00 3.18
447 488 2.685897 GTGCCCTACAACTTGTTGAACA 59.314 45.455 18.82 0.00 0.00 3.18
448 489 3.317993 GTGCCCTACAACTTGTTGAACAT 59.682 43.478 18.82 0.75 0.00 2.71
449 490 3.568007 TGCCCTACAACTTGTTGAACATC 59.432 43.478 18.82 6.67 0.00 3.06
450 491 3.057526 GCCCTACAACTTGTTGAACATCC 60.058 47.826 18.82 1.21 0.00 3.51
451 492 4.141287 CCCTACAACTTGTTGAACATCCA 58.859 43.478 18.82 0.00 0.00 3.41
452 493 4.216257 CCCTACAACTTGTTGAACATCCAG 59.784 45.833 18.82 0.00 0.00 3.86
453 494 4.821805 CCTACAACTTGTTGAACATCCAGT 59.178 41.667 18.82 0.00 0.00 4.00
454 495 5.299279 CCTACAACTTGTTGAACATCCAGTT 59.701 40.000 18.82 7.79 44.93 3.16
455 496 6.485313 CCTACAACTTGTTGAACATCCAGTTA 59.515 38.462 18.82 0.41 41.51 2.24
456 497 6.959639 ACAACTTGTTGAACATCCAGTTAT 57.040 33.333 18.82 0.85 41.51 1.89
457 498 7.346751 ACAACTTGTTGAACATCCAGTTATT 57.653 32.000 18.82 2.55 41.51 1.40
458 499 7.781056 ACAACTTGTTGAACATCCAGTTATTT 58.219 30.769 18.82 0.59 41.51 1.40
459 500 8.257306 ACAACTTGTTGAACATCCAGTTATTTT 58.743 29.630 18.82 0.00 41.51 1.82
460 501 8.542132 CAACTTGTTGAACATCCAGTTATTTTG 58.458 33.333 12.06 0.00 41.51 2.44
461 502 8.006298 ACTTGTTGAACATCCAGTTATTTTGA 57.994 30.769 0.00 0.00 41.51 2.69
462 503 8.474025 ACTTGTTGAACATCCAGTTATTTTGAA 58.526 29.630 0.00 0.00 41.51 2.69
463 504 8.641499 TTGTTGAACATCCAGTTATTTTGAAC 57.359 30.769 0.00 0.00 41.51 3.18
511 552 5.428496 TTCTTTTGAGTGCTCTGAACATG 57.572 39.130 0.00 0.00 0.00 3.21
576 1244 4.620937 GGCCGGCTTCCGTATCCC 62.621 72.222 28.56 0.41 46.80 3.85
578 1246 2.735237 CCGGCTTCCGTATCCCTC 59.265 66.667 4.47 0.00 46.80 4.30
612 1280 2.589014 GTAGACGTTTAGTGTGTCCGG 58.411 52.381 0.00 0.00 33.09 5.14
638 1367 0.108138 GTACGCAGTTGGAGATGCCT 60.108 55.000 0.00 0.00 37.78 4.75
644 1373 3.488047 CGCAGTTGGAGATGCCTTTATTG 60.488 47.826 0.00 0.00 39.30 1.90
657 1386 3.891049 CCTTTATTGCAAGCTCTAGGGT 58.109 45.455 4.94 0.00 0.00 4.34
661 1390 6.038714 CCTTTATTGCAAGCTCTAGGGTAAAG 59.961 42.308 4.94 10.25 0.00 1.85
666 1395 5.570320 TGCAAGCTCTAGGGTAAAGAAAAT 58.430 37.500 0.00 0.00 0.00 1.82
727 1462 3.118186 TCCGTGAGAAGGAGAAACCAAAA 60.118 43.478 0.00 0.00 42.04 2.44
731 1469 4.037923 GTGAGAAGGAGAAACCAAAATGCA 59.962 41.667 0.00 0.00 42.04 3.96
750 1497 4.072131 TGCAGACCAATAAGGACAAGAAC 58.928 43.478 0.00 0.00 41.22 3.01
751 1498 4.072131 GCAGACCAATAAGGACAAGAACA 58.928 43.478 0.00 0.00 41.22 3.18
752 1499 4.518970 GCAGACCAATAAGGACAAGAACAA 59.481 41.667 0.00 0.00 41.22 2.83
753 1500 5.335191 GCAGACCAATAAGGACAAGAACAAG 60.335 44.000 0.00 0.00 41.22 3.16
754 1501 5.997746 CAGACCAATAAGGACAAGAACAAGA 59.002 40.000 0.00 0.00 41.22 3.02
755 1502 6.148480 CAGACCAATAAGGACAAGAACAAGAG 59.852 42.308 0.00 0.00 41.22 2.85
756 1503 4.762251 ACCAATAAGGACAAGAACAAGAGC 59.238 41.667 0.00 0.00 41.22 4.09
757 1504 4.761739 CCAATAAGGACAAGAACAAGAGCA 59.238 41.667 0.00 0.00 41.22 4.26
769 1516 3.281727 ACAAGAGCAAGGACAAGAACA 57.718 42.857 0.00 0.00 0.00 3.18
771 1518 3.378427 ACAAGAGCAAGGACAAGAACAAC 59.622 43.478 0.00 0.00 0.00 3.32
886 1689 8.671921 CGTTGGAACTACGGAGTATATATGTAT 58.328 37.037 0.00 0.00 44.56 2.29
888 1691 7.993101 TGGAACTACGGAGTATATATGTATGC 58.007 38.462 0.00 0.00 44.56 3.14
889 1692 7.067859 TGGAACTACGGAGTATATATGTATGCC 59.932 40.741 0.00 0.00 44.56 4.40
890 1693 7.067859 GGAACTACGGAGTATATATGTATGCCA 59.932 40.741 0.00 0.00 44.56 4.92
891 1694 7.949690 ACTACGGAGTATATATGTATGCCAA 57.050 36.000 0.00 0.00 44.56 4.52
892 1695 8.534954 ACTACGGAGTATATATGTATGCCAAT 57.465 34.615 0.00 0.00 44.56 3.16
912 1715 2.745100 ATCGCACTGCAGCACCTG 60.745 61.111 15.27 5.57 34.12 4.00
929 1732 2.736995 GCCACGCACGCTTGACTA 60.737 61.111 0.00 0.00 0.00 2.59
931 1734 2.716828 CCACGCACGCTTGACTACG 61.717 63.158 0.00 0.00 0.00 3.51
933 1736 0.726787 CACGCACGCTTGACTACGTA 60.727 55.000 0.00 0.00 41.32 3.57
934 1737 0.727122 ACGCACGCTTGACTACGTAC 60.727 55.000 0.00 0.00 41.32 3.67
935 1738 1.400990 CGCACGCTTGACTACGTACC 61.401 60.000 0.00 0.00 41.32 3.34
936 1739 0.109412 GCACGCTTGACTACGTACCT 60.109 55.000 0.00 0.00 41.32 3.08
937 1740 1.131126 GCACGCTTGACTACGTACCTA 59.869 52.381 0.00 0.00 41.32 3.08
938 1741 2.790468 GCACGCTTGACTACGTACCTAG 60.790 54.545 0.00 0.00 41.32 3.02
939 1742 1.399791 ACGCTTGACTACGTACCTAGC 59.600 52.381 13.06 13.06 41.48 3.42
940 1743 1.669779 CGCTTGACTACGTACCTAGCT 59.330 52.381 17.64 0.00 0.00 3.32
941 1744 2.868583 CGCTTGACTACGTACCTAGCTA 59.131 50.000 17.64 0.00 0.00 3.32
942 1745 3.059733 CGCTTGACTACGTACCTAGCTAG 60.060 52.174 14.20 14.20 0.00 3.42
1064 1884 1.996786 GCAATCACATCACCAGCCGG 61.997 60.000 0.00 0.00 38.77 6.13
1099 1919 1.298859 CGGCACCCAAGAGCTACAAC 61.299 60.000 0.00 0.00 0.00 3.32
1126 1946 1.371558 GCAAACGTCTCCCTGGACT 59.628 57.895 0.00 0.00 34.38 3.85
1134 1969 0.041833 TCTCCCTGGACTTGGAGGAG 59.958 60.000 5.77 0.00 46.71 3.69
1140 1975 0.041833 TGGACTTGGAGGAGGAGGAG 59.958 60.000 0.00 0.00 0.00 3.69
1144 1979 1.000486 TTGGAGGAGGAGGAGGACG 60.000 63.158 0.00 0.00 0.00 4.79
1145 1980 1.506907 TTGGAGGAGGAGGAGGACGA 61.507 60.000 0.00 0.00 0.00 4.20
1146 1981 1.454295 GGAGGAGGAGGAGGACGAC 60.454 68.421 0.00 0.00 0.00 4.34
1147 1982 1.820481 GAGGAGGAGGAGGACGACG 60.820 68.421 0.00 0.00 0.00 5.12
1148 1983 2.254737 GAGGAGGAGGAGGACGACGA 62.255 65.000 0.00 0.00 0.00 4.20
1154 2007 3.519930 GGAGGACGACGAGGAGCC 61.520 72.222 0.00 0.00 0.00 4.70
1416 2548 4.003788 CACCAGTCCGTCGCCCTT 62.004 66.667 0.00 0.00 0.00 3.95
1702 2837 3.956199 ACAAATTGGCATGTCATAGAGGG 59.044 43.478 0.00 0.00 0.00 4.30
1705 2840 2.715749 TGGCATGTCATAGAGGGTTG 57.284 50.000 0.00 0.00 0.00 3.77
1721 3019 5.848921 AGAGGGTTGGCTATCATCTTATCTT 59.151 40.000 0.00 0.00 0.00 2.40
1722 3020 7.019388 AGAGGGTTGGCTATCATCTTATCTTA 58.981 38.462 0.00 0.00 0.00 2.10
1896 4021 3.804325 ACGTGAGTTCACTTCATGTTCTG 59.196 43.478 10.27 0.00 46.40 3.02
1907 4032 1.202879 TCATGTTCTGCCGGACCTTTT 60.203 47.619 5.05 0.00 0.00 2.27
1908 4033 1.613437 CATGTTCTGCCGGACCTTTTT 59.387 47.619 5.05 0.00 0.00 1.94
1940 4065 0.179054 GGTTAATCCCCGGTCTCTGC 60.179 60.000 0.00 0.00 0.00 4.26
1941 4066 0.539986 GTTAATCCCCGGTCTCTGCA 59.460 55.000 0.00 0.00 0.00 4.41
1942 4067 1.141053 GTTAATCCCCGGTCTCTGCAT 59.859 52.381 0.00 0.00 0.00 3.96
1943 4068 1.048601 TAATCCCCGGTCTCTGCATC 58.951 55.000 0.00 0.00 0.00 3.91
1944 4069 0.982852 AATCCCCGGTCTCTGCATCA 60.983 55.000 0.00 0.00 0.00 3.07
1945 4070 1.406065 ATCCCCGGTCTCTGCATCAG 61.406 60.000 0.00 0.00 0.00 2.90
1946 4071 2.060383 CCCCGGTCTCTGCATCAGA 61.060 63.158 0.00 0.00 38.25 3.27
1947 4072 1.617018 CCCCGGTCTCTGCATCAGAA 61.617 60.000 0.00 0.00 40.18 3.02
1948 4073 0.460987 CCCGGTCTCTGCATCAGAAC 60.461 60.000 0.00 1.42 40.18 3.01
1949 4074 2.658538 CGGTCTCTGCATCAGAACG 58.341 57.895 16.34 16.34 44.21 3.95
1951 4076 2.593346 GGTCTCTGCATCAGAACGAT 57.407 50.000 0.00 0.00 40.18 3.73
1960 4085 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
1961 4086 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
1962 4087 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
1963 4088 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
1964 4089 1.343142 AGAACGATGCATACGGCCATA 59.657 47.619 18.34 0.00 43.89 2.74
1965 4090 2.028112 AGAACGATGCATACGGCCATAT 60.028 45.455 18.34 0.00 43.89 1.78
1966 4091 3.194755 AGAACGATGCATACGGCCATATA 59.805 43.478 18.34 0.00 43.89 0.86
1967 4092 3.603158 ACGATGCATACGGCCATATAA 57.397 42.857 18.34 0.00 43.89 0.98
1968 4093 4.137116 ACGATGCATACGGCCATATAAT 57.863 40.909 18.34 0.00 43.89 1.28
1969 4094 4.513442 ACGATGCATACGGCCATATAATT 58.487 39.130 18.34 0.00 43.89 1.40
1970 4095 5.666462 ACGATGCATACGGCCATATAATTA 58.334 37.500 18.34 0.00 43.89 1.40
1971 4096 6.110033 ACGATGCATACGGCCATATAATTAA 58.890 36.000 18.34 0.00 43.89 1.40
1972 4097 6.765989 ACGATGCATACGGCCATATAATTAAT 59.234 34.615 18.34 0.00 43.89 1.40
1973 4098 7.929245 ACGATGCATACGGCCATATAATTAATA 59.071 33.333 18.34 0.00 43.89 0.98
1974 4099 8.769891 CGATGCATACGGCCATATAATTAATAA 58.230 33.333 2.24 0.00 43.89 1.40
1977 4102 9.232473 TGCATACGGCCATATAATTAATAAACA 57.768 29.630 2.24 0.00 43.89 2.83
1982 4107 9.974980 ACGGCCATATAATTAATAAACAAAAGG 57.025 29.630 2.24 0.00 0.00 3.11
1983 4108 9.974980 CGGCCATATAATTAATAAACAAAAGGT 57.025 29.630 2.24 0.00 0.00 3.50
1998 4123 8.926715 AAACAAAAGGTTCAACATAAGTCTTC 57.073 30.769 0.00 0.00 39.29 2.87
1999 4124 7.639113 ACAAAAGGTTCAACATAAGTCTTCA 57.361 32.000 0.00 0.00 0.00 3.02
2000 4125 7.707104 ACAAAAGGTTCAACATAAGTCTTCAG 58.293 34.615 0.00 0.00 0.00 3.02
2001 4126 5.948992 AAGGTTCAACATAAGTCTTCAGC 57.051 39.130 0.00 0.00 0.00 4.26
2002 4127 5.234466 AGGTTCAACATAAGTCTTCAGCT 57.766 39.130 0.00 0.00 0.00 4.24
2003 4128 5.241662 AGGTTCAACATAAGTCTTCAGCTC 58.758 41.667 0.00 0.00 0.00 4.09
2004 4129 5.012561 AGGTTCAACATAAGTCTTCAGCTCT 59.987 40.000 0.00 0.00 0.00 4.09
2005 4130 5.350091 GGTTCAACATAAGTCTTCAGCTCTC 59.650 44.000 0.00 0.00 0.00 3.20
2006 4131 5.728637 TCAACATAAGTCTTCAGCTCTCA 57.271 39.130 0.00 0.00 0.00 3.27
2007 4132 6.101650 TCAACATAAGTCTTCAGCTCTCAA 57.898 37.500 0.00 0.00 0.00 3.02
2008 4133 6.524734 TCAACATAAGTCTTCAGCTCTCAAA 58.475 36.000 0.00 0.00 0.00 2.69
2009 4134 6.992123 TCAACATAAGTCTTCAGCTCTCAAAA 59.008 34.615 0.00 0.00 0.00 2.44
2010 4135 7.663081 TCAACATAAGTCTTCAGCTCTCAAAAT 59.337 33.333 0.00 0.00 0.00 1.82
2011 4136 8.939929 CAACATAAGTCTTCAGCTCTCAAAATA 58.060 33.333 0.00 0.00 0.00 1.40
2012 4137 8.715191 ACATAAGTCTTCAGCTCTCAAAATAG 57.285 34.615 0.00 0.00 0.00 1.73
2013 4138 8.535335 ACATAAGTCTTCAGCTCTCAAAATAGA 58.465 33.333 0.00 0.00 0.00 1.98
2014 4139 9.376075 CATAAGTCTTCAGCTCTCAAAATAGAA 57.624 33.333 0.00 0.00 0.00 2.10
2015 4140 7.665561 AAGTCTTCAGCTCTCAAAATAGAAC 57.334 36.000 0.00 0.00 0.00 3.01
2016 4141 5.866633 AGTCTTCAGCTCTCAAAATAGAACG 59.133 40.000 0.00 0.00 0.00 3.95
2017 4142 5.062809 GTCTTCAGCTCTCAAAATAGAACGG 59.937 44.000 0.00 0.00 0.00 4.44
2018 4143 4.801330 TCAGCTCTCAAAATAGAACGGA 57.199 40.909 0.00 0.00 0.00 4.69
2019 4144 5.147330 TCAGCTCTCAAAATAGAACGGAA 57.853 39.130 0.00 0.00 0.00 4.30
2020 4145 5.547465 TCAGCTCTCAAAATAGAACGGAAA 58.453 37.500 0.00 0.00 0.00 3.13
2021 4146 5.995282 TCAGCTCTCAAAATAGAACGGAAAA 59.005 36.000 0.00 0.00 0.00 2.29
2022 4147 6.485313 TCAGCTCTCAAAATAGAACGGAAAAA 59.515 34.615 0.00 0.00 0.00 1.94
2052 4177 8.190888 CTCACTAAGAGCTAACAAAATACAGG 57.809 38.462 0.00 0.00 37.59 4.00
2053 4178 7.903145 TCACTAAGAGCTAACAAAATACAGGA 58.097 34.615 0.00 0.00 0.00 3.86
2054 4179 8.372459 TCACTAAGAGCTAACAAAATACAGGAA 58.628 33.333 0.00 0.00 0.00 3.36
2055 4180 8.999431 CACTAAGAGCTAACAAAATACAGGAAA 58.001 33.333 0.00 0.00 0.00 3.13
2056 4181 9.220767 ACTAAGAGCTAACAAAATACAGGAAAG 57.779 33.333 0.00 0.00 0.00 2.62
2057 4182 6.502136 AGAGCTAACAAAATACAGGAAAGC 57.498 37.500 0.00 0.00 0.00 3.51
2058 4183 5.416013 AGAGCTAACAAAATACAGGAAAGCC 59.584 40.000 0.00 0.00 0.00 4.35
2059 4184 5.076873 AGCTAACAAAATACAGGAAAGCCA 58.923 37.500 0.00 0.00 36.29 4.75
2060 4185 5.048013 AGCTAACAAAATACAGGAAAGCCAC 60.048 40.000 0.00 0.00 36.29 5.01
2061 4186 5.278758 GCTAACAAAATACAGGAAAGCCACA 60.279 40.000 0.00 0.00 36.29 4.17
2062 4187 5.606348 AACAAAATACAGGAAAGCCACAA 57.394 34.783 0.00 0.00 36.29 3.33
2063 4188 4.944048 ACAAAATACAGGAAAGCCACAAC 58.056 39.130 0.00 0.00 36.29 3.32
2064 4189 4.202212 ACAAAATACAGGAAAGCCACAACC 60.202 41.667 0.00 0.00 36.29 3.77
2065 4190 1.821216 ATACAGGAAAGCCACAACCG 58.179 50.000 0.00 0.00 36.29 4.44
2066 4191 0.250553 TACAGGAAAGCCACAACCGG 60.251 55.000 0.00 0.00 36.29 5.28
2074 4199 4.787286 CCACAACCGGCCGGCATA 62.787 66.667 43.58 0.00 39.32 3.14
2075 4200 2.748251 CACAACCGGCCGGCATAA 60.748 61.111 43.58 0.00 39.32 1.90
2076 4201 2.034376 ACAACCGGCCGGCATAAA 59.966 55.556 43.58 0.00 39.32 1.40
2077 4202 1.604023 ACAACCGGCCGGCATAAAA 60.604 52.632 43.58 0.00 39.32 1.52
2078 4203 1.179814 ACAACCGGCCGGCATAAAAA 61.180 50.000 43.58 0.00 39.32 1.94
2104 4229 8.910351 AAGATAGAAACACTAAATGCCTATCC 57.090 34.615 0.00 0.00 36.82 2.59
2105 4230 8.268878 AGATAGAAACACTAAATGCCTATCCT 57.731 34.615 0.00 0.00 36.82 3.24
2106 4231 9.381038 AGATAGAAACACTAAATGCCTATCCTA 57.619 33.333 0.00 0.00 36.82 2.94
2110 4235 9.780186 AGAAACACTAAATGCCTATCCTATTAC 57.220 33.333 0.00 0.00 0.00 1.89
2111 4236 8.603242 AAACACTAAATGCCTATCCTATTACG 57.397 34.615 0.00 0.00 0.00 3.18
2112 4237 7.299246 ACACTAAATGCCTATCCTATTACGT 57.701 36.000 0.00 0.00 0.00 3.57
2113 4238 7.152645 ACACTAAATGCCTATCCTATTACGTG 58.847 38.462 0.00 0.00 0.00 4.49
2114 4239 7.014905 ACACTAAATGCCTATCCTATTACGTGA 59.985 37.037 0.00 0.00 0.00 4.35
2115 4240 8.035394 CACTAAATGCCTATCCTATTACGTGAT 58.965 37.037 0.00 0.00 0.00 3.06
2116 4241 8.251721 ACTAAATGCCTATCCTATTACGTGATC 58.748 37.037 0.00 0.00 0.00 2.92
2117 4242 6.859112 AATGCCTATCCTATTACGTGATCT 57.141 37.500 0.00 0.00 0.00 2.75
2118 4243 5.644977 TGCCTATCCTATTACGTGATCTG 57.355 43.478 0.00 0.00 0.00 2.90
2119 4244 4.082190 TGCCTATCCTATTACGTGATCTGC 60.082 45.833 0.00 0.00 0.00 4.26
2120 4245 4.678309 GCCTATCCTATTACGTGATCTGCC 60.678 50.000 0.00 0.00 0.00 4.85
2121 4246 3.577649 ATCCTATTACGTGATCTGCCG 57.422 47.619 0.00 0.00 0.00 5.69
2122 4247 1.611977 TCCTATTACGTGATCTGCCGG 59.388 52.381 0.00 0.00 0.00 6.13
2123 4248 1.611977 CCTATTACGTGATCTGCCGGA 59.388 52.381 5.05 0.00 0.00 5.14
2124 4249 2.607282 CCTATTACGTGATCTGCCGGAC 60.607 54.545 5.05 0.00 0.00 4.79
2125 4250 0.104304 ATTACGTGATCTGCCGGACC 59.896 55.000 5.05 0.00 0.00 4.46
2126 4251 0.968901 TTACGTGATCTGCCGGACCT 60.969 55.000 5.05 0.00 0.00 3.85
2127 4252 0.968901 TACGTGATCTGCCGGACCTT 60.969 55.000 5.05 0.00 0.00 3.50
2128 4253 1.079127 CGTGATCTGCCGGACCTTT 60.079 57.895 5.05 0.00 0.00 3.11
2152 4277 4.576463 GTGATCCGCTCCATCTTATTTTGT 59.424 41.667 0.00 0.00 0.00 2.83
2261 4386 2.749621 CAAGGAAGAATCACTTTCCCGG 59.250 50.000 0.00 0.00 39.13 5.73
2267 4392 1.401905 GAATCACTTTCCCGGCATGAC 59.598 52.381 0.00 0.00 0.00 3.06
2285 4410 2.494870 TGACGGACCCTAGTTTCTTAGC 59.505 50.000 0.00 0.00 0.00 3.09
2287 4412 3.950395 GACGGACCCTAGTTTCTTAGCTA 59.050 47.826 0.00 0.00 0.00 3.32
2290 4415 3.950395 GGACCCTAGTTTCTTAGCTACGA 59.050 47.826 0.00 0.00 0.00 3.43
2304 4429 1.620413 CTACGACGGCGACCCAAAAC 61.620 60.000 22.49 0.00 41.64 2.43
2314 4439 0.322546 GACCCAAAACGATGCCTCCT 60.323 55.000 0.00 0.00 0.00 3.69
2327 4452 4.488879 GATGCCTCCTTTTTGATGTTGTC 58.511 43.478 0.00 0.00 0.00 3.18
2334 4459 6.371548 CCTCCTTTTTGATGTTGTCGAGAATA 59.628 38.462 0.00 0.00 0.00 1.75
2340 4465 4.171005 TGATGTTGTCGAGAATAACCGTC 58.829 43.478 0.00 0.00 0.00 4.79
2344 4469 1.063006 TCGAGAATAACCGTCGGCG 59.937 57.895 12.28 0.29 34.43 6.46
2366 4491 1.082104 CGGCTTTGTTGCGGAAGAC 60.082 57.895 0.00 0.00 35.67 3.01
2385 4510 2.727684 GCGGGCGTTTCTCTCGTTC 61.728 63.158 0.00 0.00 0.00 3.95
2396 4521 1.095600 CTCTCGTTCCAGATCGTCCA 58.904 55.000 0.00 0.00 0.00 4.02
2397 4522 0.809385 TCTCGTTCCAGATCGTCCAC 59.191 55.000 0.00 0.00 0.00 4.02
2398 4523 0.523546 CTCGTTCCAGATCGTCCACG 60.524 60.000 0.00 0.00 41.45 4.94
2399 4524 1.211969 CGTTCCAGATCGTCCACGT 59.788 57.895 0.00 0.00 40.80 4.49
2400 4525 1.071019 CGTTCCAGATCGTCCACGTG 61.071 60.000 9.08 9.08 40.80 4.49
2401 4526 1.080093 TTCCAGATCGTCCACGTGC 60.080 57.895 10.91 0.00 40.80 5.34
2402 4527 1.811645 TTCCAGATCGTCCACGTGCA 61.812 55.000 10.91 0.00 40.80 4.57
2403 4528 2.094659 CCAGATCGTCCACGTGCAC 61.095 63.158 10.91 6.82 40.80 4.57
2404 4529 1.080501 CAGATCGTCCACGTGCACT 60.081 57.895 16.19 0.00 40.80 4.40
2405 4530 0.170339 CAGATCGTCCACGTGCACTA 59.830 55.000 16.19 0.00 40.80 2.74
2406 4531 0.452184 AGATCGTCCACGTGCACTAG 59.548 55.000 16.19 6.85 40.80 2.57
2407 4532 0.170561 GATCGTCCACGTGCACTAGT 59.829 55.000 16.19 3.07 40.80 2.57
2408 4533 0.109272 ATCGTCCACGTGCACTAGTG 60.109 55.000 18.93 18.93 40.80 2.74
2409 4534 2.742710 TCGTCCACGTGCACTAGTGC 62.743 60.000 35.76 35.76 46.58 4.40
2419 4544 2.682893 CACTAGTGCAGAATCGGGC 58.317 57.895 10.54 0.00 0.00 6.13
2420 4545 0.176680 CACTAGTGCAGAATCGGGCT 59.823 55.000 10.54 0.00 0.00 5.19
2421 4546 0.461961 ACTAGTGCAGAATCGGGCTC 59.538 55.000 0.00 0.00 0.00 4.70
2422 4547 0.749649 CTAGTGCAGAATCGGGCTCT 59.250 55.000 8.88 8.88 37.57 4.09
2423 4548 1.957177 CTAGTGCAGAATCGGGCTCTA 59.043 52.381 9.88 9.88 35.66 2.43
2424 4549 0.749649 AGTGCAGAATCGGGCTCTAG 59.250 55.000 0.00 0.00 32.62 2.43
2425 4550 0.878086 GTGCAGAATCGGGCTCTAGC 60.878 60.000 0.00 0.00 41.14 3.42
2426 4551 1.663074 GCAGAATCGGGCTCTAGCG 60.663 63.158 0.00 0.00 43.26 4.26
2435 4560 4.493747 GCTCTAGCGCCGGTTCGT 62.494 66.667 2.29 0.00 0.00 3.85
2436 4561 3.104766 CTCTAGCGCCGGTTCGTA 58.895 61.111 2.29 0.00 0.00 3.43
2437 4562 1.430632 CTCTAGCGCCGGTTCGTAA 59.569 57.895 2.29 0.00 0.00 3.18
2438 4563 0.591741 CTCTAGCGCCGGTTCGTAAG 60.592 60.000 2.29 1.25 0.00 2.34
2439 4564 1.588139 CTAGCGCCGGTTCGTAAGG 60.588 63.158 2.29 0.00 38.47 2.69
2440 4565 2.948840 CTAGCGCCGGTTCGTAAGGG 62.949 65.000 2.29 0.00 38.47 3.95
2443 4568 4.091939 GCCGGTTCGTAAGGGCCT 62.092 66.667 0.00 0.00 39.67 5.19
2444 4569 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
2445 4570 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
2446 4571 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
2447 4572 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
2448 4573 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
2449 4574 2.353323 GGTTCGTAAGGGCCTTTAGTG 58.647 52.381 26.29 11.88 38.47 2.74
2450 4575 1.736126 GTTCGTAAGGGCCTTTAGTGC 59.264 52.381 26.29 8.97 38.47 4.40
2456 4581 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
2457 4582 2.044555 GGCCTTTAGTGCCGGTTCC 61.045 63.158 1.90 0.00 39.48 3.62
2458 4583 1.302993 GCCTTTAGTGCCGGTTCCA 60.303 57.895 1.90 0.00 0.00 3.53
2459 4584 0.679960 GCCTTTAGTGCCGGTTCCAT 60.680 55.000 1.90 0.00 0.00 3.41
2460 4585 1.407712 GCCTTTAGTGCCGGTTCCATA 60.408 52.381 1.90 0.00 0.00 2.74
2461 4586 2.942306 GCCTTTAGTGCCGGTTCCATAA 60.942 50.000 1.90 0.00 0.00 1.90
2462 4587 2.681344 CCTTTAGTGCCGGTTCCATAAC 59.319 50.000 1.90 0.00 34.66 1.89
2471 4596 2.406596 GGTTCCATAACCGGCACTAA 57.593 50.000 0.00 0.00 45.61 2.24
2472 4597 2.713877 GGTTCCATAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.61 1.85
2473 4598 2.681344 GGTTCCATAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.61 1.85
2474 4599 2.681344 GTTCCATAACCGGCACTAAAGG 59.319 50.000 0.00 0.00 0.00 3.11
2475 4600 1.210967 TCCATAACCGGCACTAAAGGG 59.789 52.381 0.00 0.00 0.00 3.95
2476 4601 1.064979 CCATAACCGGCACTAAAGGGT 60.065 52.381 0.00 0.00 0.00 4.34
2477 4602 2.014128 CATAACCGGCACTAAAGGGTG 58.986 52.381 0.00 0.00 39.91 4.61
2478 4603 0.325602 TAACCGGCACTAAAGGGTGG 59.674 55.000 0.00 0.00 37.65 4.61
2479 4604 2.045340 CCGGCACTAAAGGGTGGG 60.045 66.667 0.00 0.00 37.65 4.61
2480 4605 2.045340 CGGCACTAAAGGGTGGGG 60.045 66.667 0.00 0.00 37.65 4.96
2481 4606 2.598787 CGGCACTAAAGGGTGGGGA 61.599 63.158 0.00 0.00 37.65 4.81
2482 4607 1.001269 GGCACTAAAGGGTGGGGAC 60.001 63.158 0.00 0.00 37.65 4.46
2483 4608 1.498176 GGCACTAAAGGGTGGGGACT 61.498 60.000 0.00 0.00 37.65 3.85
2484 4609 1.282382 GCACTAAAGGGTGGGGACTA 58.718 55.000 0.00 0.00 37.65 2.59
2485 4610 1.631898 GCACTAAAGGGTGGGGACTAA 59.368 52.381 0.00 0.00 37.65 2.24
2486 4611 2.040679 GCACTAAAGGGTGGGGACTAAA 59.959 50.000 0.00 0.00 37.65 1.85
2487 4612 3.872630 GCACTAAAGGGTGGGGACTAAAG 60.873 52.174 0.00 0.00 37.65 1.85
2488 4613 2.917600 ACTAAAGGGTGGGGACTAAAGG 59.082 50.000 0.00 0.00 0.00 3.11
2489 4614 0.408309 AAAGGGTGGGGACTAAAGGC 59.592 55.000 0.00 0.00 0.00 4.35
2490 4615 1.506907 AAGGGTGGGGACTAAAGGCC 61.507 60.000 0.00 0.00 0.00 5.19
2491 4616 2.681591 GGTGGGGACTAAAGGCCC 59.318 66.667 13.03 13.03 43.91 5.80
2510 4635 0.176449 CCCCCTTTAGTACCGGTTCG 59.824 60.000 15.04 0.00 0.00 3.95
2528 4653 3.043121 GCACGAACCGGCGGTAAA 61.043 61.111 34.37 0.00 33.12 2.01
2529 4654 3.018840 GCACGAACCGGCGGTAAAG 62.019 63.158 34.37 26.54 33.12 1.85
2530 4655 1.665599 CACGAACCGGCGGTAAAGT 60.666 57.895 34.37 27.21 33.12 2.66
2531 4656 1.665599 ACGAACCGGCGGTAAAGTG 60.666 57.895 34.37 21.25 33.12 3.16
2532 4657 2.865308 GAACCGGCGGTAAAGTGC 59.135 61.111 34.37 13.57 33.12 4.40
2538 4663 2.951458 GCGGTAAAGTGCCACCAC 59.049 61.111 0.00 0.00 42.39 4.16
2539 4664 2.961669 GCGGTAAAGTGCCACCACG 61.962 63.158 0.00 0.00 46.62 4.94
2540 4665 1.595929 CGGTAAAGTGCCACCACGT 60.596 57.895 0.00 0.00 46.62 4.49
2541 4666 1.837538 CGGTAAAGTGCCACCACGTG 61.838 60.000 9.08 9.08 46.62 4.49
2550 4675 3.036084 CACCACGTGGCACGAGAC 61.036 66.667 42.65 4.23 46.05 3.36
2551 4676 3.533105 ACCACGTGGCACGAGACA 61.533 61.111 42.65 0.00 46.05 3.41
2552 4677 2.734723 CCACGTGGCACGAGACAG 60.735 66.667 42.65 25.00 46.05 3.51
2553 4678 2.734723 CACGTGGCACGAGACAGG 60.735 66.667 42.65 20.95 46.05 4.00
2554 4679 4.664677 ACGTGGCACGAGACAGGC 62.665 66.667 42.65 0.87 46.05 4.85
2572 4697 4.332591 CCGGGTGCGGGTAAACCA 62.333 66.667 0.00 0.00 40.22 3.67
2573 4698 2.045731 CGGGTGCGGGTAAACCAT 60.046 61.111 0.81 0.00 40.22 3.55
2574 4699 1.676303 CGGGTGCGGGTAAACCATT 60.676 57.895 0.81 0.00 40.22 3.16
2575 4700 0.392729 CGGGTGCGGGTAAACCATTA 60.393 55.000 0.81 0.00 40.22 1.90
2576 4701 1.385528 GGGTGCGGGTAAACCATTAG 58.614 55.000 0.81 0.00 40.22 1.73
2577 4702 1.340308 GGGTGCGGGTAAACCATTAGT 60.340 52.381 0.81 0.00 40.22 2.24
2578 4703 2.093021 GGGTGCGGGTAAACCATTAGTA 60.093 50.000 0.81 0.00 40.22 1.82
2579 4704 2.938451 GGTGCGGGTAAACCATTAGTAC 59.062 50.000 0.81 0.00 40.22 2.73
2580 4705 2.938451 GTGCGGGTAAACCATTAGTACC 59.062 50.000 0.81 0.00 40.22 3.34
2581 4706 2.204237 GCGGGTAAACCATTAGTACCG 58.796 52.381 0.81 0.00 38.56 4.02
2582 4707 2.825205 CGGGTAAACCATTAGTACCGG 58.175 52.381 0.00 0.00 38.56 5.28
2583 4708 2.168313 CGGGTAAACCATTAGTACCGGT 59.832 50.000 13.98 13.98 38.56 5.28
2584 4709 3.369366 CGGGTAAACCATTAGTACCGGTT 60.369 47.826 15.04 0.00 44.90 4.44
2585 4710 3.940852 GGGTAAACCATTAGTACCGGTTG 59.059 47.826 15.04 3.82 42.18 3.77
2586 4711 3.940852 GGTAAACCATTAGTACCGGTTGG 59.059 47.826 15.04 17.37 42.18 3.77
2587 4712 4.565444 GGTAAACCATTAGTACCGGTTGGT 60.565 45.833 20.02 20.02 42.18 3.67
2588 4713 5.337975 GGTAAACCATTAGTACCGGTTGGTA 60.338 44.000 24.61 10.42 42.18 3.25
2589 4714 6.632445 GGTAAACCATTAGTACCGGTTGGTAT 60.632 42.308 24.61 13.88 43.49 2.73
2590 4715 8.377749 GGTAAACCATTAGTACCGGTTGGTATC 61.378 44.444 24.61 17.40 43.49 2.24
2606 4731 4.470334 GGTATCACCAACCGGTACTAAA 57.530 45.455 8.00 0.00 46.94 1.85
2607 4732 5.027293 GGTATCACCAACCGGTACTAAAT 57.973 43.478 8.00 1.91 46.94 1.40
2608 4733 4.812626 GGTATCACCAACCGGTACTAAATG 59.187 45.833 8.00 0.00 46.94 2.32
2609 4734 4.563140 ATCACCAACCGGTACTAAATGT 57.437 40.909 8.00 0.00 46.94 2.71
2610 4735 4.354893 TCACCAACCGGTACTAAATGTT 57.645 40.909 8.00 0.00 46.94 2.71
2611 4736 4.716794 TCACCAACCGGTACTAAATGTTT 58.283 39.130 8.00 0.00 46.94 2.83
2612 4737 4.515944 TCACCAACCGGTACTAAATGTTTG 59.484 41.667 8.00 0.00 46.94 2.93
2613 4738 3.822167 ACCAACCGGTACTAAATGTTTGG 59.178 43.478 8.00 10.60 46.71 3.28
2614 4739 3.191791 CCAACCGGTACTAAATGTTTGGG 59.808 47.826 8.00 0.00 31.35 4.12
2615 4740 3.076079 ACCGGTACTAAATGTTTGGGG 57.924 47.619 4.49 0.00 0.00 4.96
2616 4741 2.291089 ACCGGTACTAAATGTTTGGGGG 60.291 50.000 4.49 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.264460 ACTTTTGCTTGTGAAACCAACA 57.736 36.364 0.00 0.00 34.36 3.33
1 2 5.407502 AGTACTTTTGCTTGTGAAACCAAC 58.592 37.500 0.00 0.00 34.36 3.77
21 22 4.393834 TGCAAGTTGTAGGATGCAAAGTA 58.606 39.130 4.48 0.00 43.85 2.24
29 30 2.831685 TCGTGTGCAAGTTGTAGGAT 57.168 45.000 4.48 0.00 0.00 3.24
30 31 2.611971 GGATCGTGTGCAAGTTGTAGGA 60.612 50.000 4.48 3.68 0.00 2.94
35 36 2.234613 ACGGATCGTGTGCAAGTTG 58.765 52.632 0.00 0.00 39.18 3.16
47 48 3.127548 ACTTCACATTGCATTCACGGATC 59.872 43.478 0.00 0.00 0.00 3.36
70 71 5.014858 GTGTACTATAGGTATGGGCTAGCA 58.985 45.833 18.24 0.00 32.56 3.49
72 73 5.577100 TGGTGTACTATAGGTATGGGCTAG 58.423 45.833 4.43 0.00 32.56 3.42
74 75 4.480777 TGGTGTACTATAGGTATGGGCT 57.519 45.455 4.43 0.00 32.56 5.19
76 77 6.253758 TGAGATGGTGTACTATAGGTATGGG 58.746 44.000 4.43 0.00 32.56 4.00
79 80 9.080097 GAGTTTGAGATGGTGTACTATAGGTAT 57.920 37.037 4.43 0.00 32.56 2.73
80 81 7.504911 GGAGTTTGAGATGGTGTACTATAGGTA 59.495 40.741 4.43 0.00 0.00 3.08
127 128 0.804989 CTTCTTTCCACCCATGCGAC 59.195 55.000 0.00 0.00 0.00 5.19
145 146 2.391724 ATTGACGCGTTGGACCACCT 62.392 55.000 15.53 0.00 37.04 4.00
147 148 1.225376 TGATTGACGCGTTGGACCAC 61.225 55.000 15.53 0.00 0.00 4.16
151 152 0.036858 TCCATGATTGACGCGTTGGA 60.037 50.000 21.01 21.01 0.00 3.53
154 157 2.205074 GATCTCCATGATTGACGCGTT 58.795 47.619 15.53 0.00 35.14 4.84
155 158 1.858091 GATCTCCATGATTGACGCGT 58.142 50.000 13.85 13.85 35.14 6.01
158 161 4.611943 ACTTACGATCTCCATGATTGACG 58.388 43.478 0.00 0.00 38.55 4.35
159 162 6.910536 AAACTTACGATCTCCATGATTGAC 57.089 37.500 0.00 0.00 38.55 3.18
188 191 2.610374 GACCAACACGTAGAGCAACAAA 59.390 45.455 0.00 0.00 0.00 2.83
254 290 0.446222 CCGTTGTTTGATACAGGGCG 59.554 55.000 0.00 0.00 38.19 6.13
257 293 2.742053 CACCTCCGTTGTTTGATACAGG 59.258 50.000 0.00 0.00 38.19 4.00
278 314 4.913335 ATGCATCAACATGAATGACCTC 57.087 40.909 0.00 0.00 30.57 3.85
392 433 5.034152 CGCACACTGTTCAACAAGTTTAAT 58.966 37.500 0.00 0.00 0.00 1.40
400 441 0.943673 CATCCGCACACTGTTCAACA 59.056 50.000 0.00 0.00 0.00 3.33
401 442 1.225855 TCATCCGCACACTGTTCAAC 58.774 50.000 0.00 0.00 0.00 3.18
404 445 1.512926 AGTTCATCCGCACACTGTTC 58.487 50.000 0.00 0.00 0.00 3.18
405 446 1.873591 GAAGTTCATCCGCACACTGTT 59.126 47.619 0.00 0.00 0.00 3.16
406 447 1.512926 GAAGTTCATCCGCACACTGT 58.487 50.000 0.00 0.00 0.00 3.55
409 450 0.163788 CACGAAGTTCATCCGCACAC 59.836 55.000 3.32 0.00 41.61 3.82
411 452 1.132640 GCACGAAGTTCATCCGCAC 59.867 57.895 3.32 0.00 41.61 5.34
412 453 2.032634 GGCACGAAGTTCATCCGCA 61.033 57.895 3.32 0.00 41.61 5.69
413 454 2.750888 GGGCACGAAGTTCATCCGC 61.751 63.158 3.32 0.00 41.61 5.54
414 455 0.174845 TAGGGCACGAAGTTCATCCG 59.825 55.000 3.32 0.00 41.61 4.18
415 456 1.066430 TGTAGGGCACGAAGTTCATCC 60.066 52.381 3.32 0.37 41.61 3.51
417 458 2.038557 AGTTGTAGGGCACGAAGTTCAT 59.961 45.455 3.32 0.00 41.61 2.57
419 460 2.165319 AGTTGTAGGGCACGAAGTTC 57.835 50.000 0.00 0.00 41.61 3.01
420 461 2.218603 CAAGTTGTAGGGCACGAAGTT 58.781 47.619 0.00 0.00 41.61 2.66
421 462 4.542028 CAACAAGTTGTAGGGCACGAAGT 61.542 47.826 9.37 0.00 37.16 3.01
422 463 1.878953 ACAAGTTGTAGGGCACGAAG 58.121 50.000 6.75 0.00 0.00 3.79
424 465 1.139256 TCAACAAGTTGTAGGGCACGA 59.861 47.619 9.37 0.00 41.16 4.35
426 467 2.685897 TGTTCAACAAGTTGTAGGGCAC 59.314 45.455 9.37 3.80 41.16 5.01
427 468 3.006112 TGTTCAACAAGTTGTAGGGCA 57.994 42.857 9.37 4.23 41.16 5.36
428 469 3.057526 GGATGTTCAACAAGTTGTAGGGC 60.058 47.826 9.37 1.61 41.16 5.19
429 470 4.141287 TGGATGTTCAACAAGTTGTAGGG 58.859 43.478 9.37 2.50 41.16 3.53
430 471 4.821805 ACTGGATGTTCAACAAGTTGTAGG 59.178 41.667 9.37 5.11 41.16 3.18
431 472 6.377327 AACTGGATGTTCAACAAGTTGTAG 57.623 37.500 9.37 2.06 41.16 2.74
433 474 6.959639 ATAACTGGATGTTCAACAAGTTGT 57.040 33.333 14.01 1.64 41.16 3.32
434 475 8.542132 CAAAATAACTGGATGTTCAACAAGTTG 58.458 33.333 14.01 6.60 39.89 3.16
435 476 8.474025 TCAAAATAACTGGATGTTCAACAAGTT 58.526 29.630 10.28 10.28 39.89 2.66
436 477 8.006298 TCAAAATAACTGGATGTTCAACAAGT 57.994 30.769 0.00 0.00 39.89 3.16
437 478 8.755018 GTTCAAAATAACTGGATGTTCAACAAG 58.245 33.333 0.00 0.00 39.89 3.16
438 479 7.433719 CGTTCAAAATAACTGGATGTTCAACAA 59.566 33.333 0.00 0.00 39.89 2.83
439 480 6.915300 CGTTCAAAATAACTGGATGTTCAACA 59.085 34.615 0.00 0.00 39.89 3.33
440 481 6.362283 CCGTTCAAAATAACTGGATGTTCAAC 59.638 38.462 0.00 0.00 39.89 3.18
441 482 6.442952 CCGTTCAAAATAACTGGATGTTCAA 58.557 36.000 0.00 0.00 39.89 2.69
442 483 5.563867 GCCGTTCAAAATAACTGGATGTTCA 60.564 40.000 0.00 0.00 39.89 3.18
443 484 4.857037 GCCGTTCAAAATAACTGGATGTTC 59.143 41.667 0.00 0.00 39.89 3.18
444 485 4.522789 AGCCGTTCAAAATAACTGGATGTT 59.477 37.500 0.00 0.00 42.31 2.71
445 486 4.079253 AGCCGTTCAAAATAACTGGATGT 58.921 39.130 0.00 0.00 0.00 3.06
446 487 4.155826 TCAGCCGTTCAAAATAACTGGATG 59.844 41.667 0.00 0.00 39.03 3.51
447 488 4.331968 TCAGCCGTTCAAAATAACTGGAT 58.668 39.130 0.00 0.00 0.00 3.41
448 489 3.745799 TCAGCCGTTCAAAATAACTGGA 58.254 40.909 0.00 0.00 0.00 3.86
449 490 4.497473 TTCAGCCGTTCAAAATAACTGG 57.503 40.909 0.00 0.00 0.00 4.00
450 491 7.754924 ACATAATTCAGCCGTTCAAAATAACTG 59.245 33.333 0.00 0.00 0.00 3.16
451 492 7.826690 ACATAATTCAGCCGTTCAAAATAACT 58.173 30.769 0.00 0.00 0.00 2.24
452 493 8.460831 AACATAATTCAGCCGTTCAAAATAAC 57.539 30.769 0.00 0.00 0.00 1.89
453 494 9.482627 AAAACATAATTCAGCCGTTCAAAATAA 57.517 25.926 0.00 0.00 0.00 1.40
454 495 9.482627 AAAAACATAATTCAGCCGTTCAAAATA 57.517 25.926 0.00 0.00 0.00 1.40
455 496 7.961325 AAAACATAATTCAGCCGTTCAAAAT 57.039 28.000 0.00 0.00 0.00 1.82
456 497 7.778470 AAAAACATAATTCAGCCGTTCAAAA 57.222 28.000 0.00 0.00 0.00 2.44
504 545 5.483583 CCCTTTAATTCTTTCCCCATGTTCA 59.516 40.000 0.00 0.00 0.00 3.18
511 552 1.754803 CCGCCCTTTAATTCTTTCCCC 59.245 52.381 0.00 0.00 0.00 4.81
548 593 4.467084 GCCGGCCATCCAACTCGA 62.467 66.667 18.11 0.00 0.00 4.04
549 594 3.976701 AAGCCGGCCATCCAACTCG 62.977 63.158 26.15 0.00 0.00 4.18
612 1280 5.618561 CATCTCCAACTGCGTACTTTAAAC 58.381 41.667 0.00 0.00 0.00 2.01
638 1367 6.717289 TCTTTACCCTAGAGCTTGCAATAAA 58.283 36.000 0.00 0.00 0.00 1.40
644 1373 6.824196 AGTATTTTCTTTACCCTAGAGCTTGC 59.176 38.462 0.00 0.00 0.00 4.01
727 1462 4.574674 TCTTGTCCTTATTGGTCTGCAT 57.425 40.909 0.00 0.00 37.07 3.96
731 1469 6.187727 TCTTGTTCTTGTCCTTATTGGTCT 57.812 37.500 0.00 0.00 37.07 3.85
750 1497 3.546815 CGTTGTTCTTGTCCTTGCTCTTG 60.547 47.826 0.00 0.00 0.00 3.02
751 1498 2.614057 CGTTGTTCTTGTCCTTGCTCTT 59.386 45.455 0.00 0.00 0.00 2.85
752 1499 2.213499 CGTTGTTCTTGTCCTTGCTCT 58.787 47.619 0.00 0.00 0.00 4.09
753 1500 1.940613 ACGTTGTTCTTGTCCTTGCTC 59.059 47.619 0.00 0.00 0.00 4.26
754 1501 2.038387 ACGTTGTTCTTGTCCTTGCT 57.962 45.000 0.00 0.00 0.00 3.91
755 1502 2.540973 GGAACGTTGTTCTTGTCCTTGC 60.541 50.000 5.00 0.00 0.00 4.01
756 1503 3.334272 GGAACGTTGTTCTTGTCCTTG 57.666 47.619 5.00 0.00 0.00 3.61
912 1715 2.736995 TAGTCAAGCGTGCGTGGC 60.737 61.111 4.17 4.17 0.00 5.01
917 1720 0.109412 AGGTACGTAGTCAAGCGTGC 60.109 55.000 0.00 0.00 43.93 5.34
929 1732 0.921896 TCCACCCTAGCTAGGTACGT 59.078 55.000 33.00 22.89 42.03 3.57
931 1734 2.694109 CAACTCCACCCTAGCTAGGTAC 59.306 54.545 33.00 0.00 42.03 3.34
933 1736 1.361543 TCAACTCCACCCTAGCTAGGT 59.638 52.381 33.00 20.64 42.03 3.08
934 1737 2.035632 CTCAACTCCACCCTAGCTAGG 58.964 57.143 30.05 30.05 43.25 3.02
935 1738 2.741145 ACTCAACTCCACCCTAGCTAG 58.259 52.381 14.20 14.20 0.00 3.42
936 1739 2.832129 CAACTCAACTCCACCCTAGCTA 59.168 50.000 0.00 0.00 0.00 3.32
937 1740 1.625818 CAACTCAACTCCACCCTAGCT 59.374 52.381 0.00 0.00 0.00 3.32
938 1741 1.623811 TCAACTCAACTCCACCCTAGC 59.376 52.381 0.00 0.00 0.00 3.42
939 1742 3.118592 GGATCAACTCAACTCCACCCTAG 60.119 52.174 0.00 0.00 0.00 3.02
940 1743 2.838202 GGATCAACTCAACTCCACCCTA 59.162 50.000 0.00 0.00 0.00 3.53
941 1744 1.630878 GGATCAACTCAACTCCACCCT 59.369 52.381 0.00 0.00 0.00 4.34
942 1745 1.340114 GGGATCAACTCAACTCCACCC 60.340 57.143 0.00 0.00 0.00 4.61
943 1746 1.630878 AGGGATCAACTCAACTCCACC 59.369 52.381 0.00 0.00 0.00 4.61
944 1747 2.039084 ACAGGGATCAACTCAACTCCAC 59.961 50.000 0.00 0.00 0.00 4.02
945 1748 2.303022 GACAGGGATCAACTCAACTCCA 59.697 50.000 0.00 0.00 0.00 3.86
946 1749 2.355209 GGACAGGGATCAACTCAACTCC 60.355 54.545 0.00 0.00 0.00 3.85
947 1750 2.675317 CGGACAGGGATCAACTCAACTC 60.675 54.545 0.00 0.00 0.00 3.01
948 1751 1.276421 CGGACAGGGATCAACTCAACT 59.724 52.381 0.00 0.00 0.00 3.16
951 1754 1.348064 AACGGACAGGGATCAACTCA 58.652 50.000 0.00 0.00 0.00 3.41
1064 1884 2.508891 CCGTCGCTCTTCATGTCGC 61.509 63.158 0.00 0.00 0.00 5.19
1126 1946 1.000486 CGTCCTCCTCCTCCTCCAA 60.000 63.158 0.00 0.00 0.00 3.53
1134 1969 1.820481 CTCCTCGTCGTCCTCCTCC 60.820 68.421 0.00 0.00 0.00 4.30
1140 1975 3.069318 AAGGGCTCCTCGTCGTCC 61.069 66.667 0.00 0.00 30.89 4.79
1144 1979 1.443828 GGATCAAGGGCTCCTCGTC 59.556 63.158 0.00 0.00 30.89 4.20
1145 1980 2.427245 CGGATCAAGGGCTCCTCGT 61.427 63.158 0.00 0.00 30.89 4.18
1146 1981 2.419198 CGGATCAAGGGCTCCTCG 59.581 66.667 0.00 0.00 30.89 4.63
1147 1982 2.110006 GCGGATCAAGGGCTCCTC 59.890 66.667 0.00 0.00 30.89 3.71
1148 1983 2.688666 TGCGGATCAAGGGCTCCT 60.689 61.111 0.00 0.00 33.87 3.69
1154 2007 2.796651 GCAAGCTGCGGATCAAGG 59.203 61.111 0.00 0.00 31.71 3.61
1416 2548 3.625716 CGTACAGGTCCCTAAACTCCCTA 60.626 52.174 0.00 0.00 0.00 3.53
1481 2613 1.227234 TAGTGCGCCCACATGATCG 60.227 57.895 4.18 0.00 44.53 3.69
1658 2790 4.866508 TGACTGTACGAGGAAGTTGATT 57.133 40.909 0.00 0.00 0.00 2.57
1662 2794 4.395959 TTGTTGACTGTACGAGGAAGTT 57.604 40.909 0.00 0.00 0.00 2.66
1702 2837 7.759886 TGCGTATAAGATAAGATGATAGCCAAC 59.240 37.037 0.00 0.00 0.00 3.77
1705 2840 7.484975 AGTGCGTATAAGATAAGATGATAGCC 58.515 38.462 0.00 0.00 0.00 3.93
1721 3019 5.968254 TGTGACCAATCTTTAGTGCGTATA 58.032 37.500 0.00 0.00 0.00 1.47
1722 3020 4.827692 TGTGACCAATCTTTAGTGCGTAT 58.172 39.130 0.00 0.00 0.00 3.06
1790 3104 4.283467 TCCCGAATTACACTGCTGCTATAT 59.717 41.667 0.00 0.00 0.00 0.86
1791 3105 3.639561 TCCCGAATTACACTGCTGCTATA 59.360 43.478 0.00 0.00 0.00 1.31
1792 3106 2.434336 TCCCGAATTACACTGCTGCTAT 59.566 45.455 0.00 0.00 0.00 2.97
1921 4046 0.179054 GCAGAGACCGGGGATTAACC 60.179 60.000 6.32 0.00 38.08 2.85
1922 4047 0.539986 TGCAGAGACCGGGGATTAAC 59.460 55.000 6.32 0.00 0.00 2.01
1923 4048 1.416401 GATGCAGAGACCGGGGATTAA 59.584 52.381 6.32 0.00 0.00 1.40
1924 4049 1.048601 GATGCAGAGACCGGGGATTA 58.951 55.000 6.32 0.00 0.00 1.75
1925 4050 0.982852 TGATGCAGAGACCGGGGATT 60.983 55.000 6.32 0.00 0.00 3.01
1926 4051 1.383109 TGATGCAGAGACCGGGGAT 60.383 57.895 6.32 0.00 0.00 3.85
1927 4052 2.038813 TGATGCAGAGACCGGGGA 59.961 61.111 6.32 0.00 0.00 4.81
1928 4053 1.617018 TTCTGATGCAGAGACCGGGG 61.617 60.000 6.32 0.00 41.75 5.73
1929 4054 0.460987 GTTCTGATGCAGAGACCGGG 60.461 60.000 6.32 0.00 41.75 5.73
1930 4055 0.803768 CGTTCTGATGCAGAGACCGG 60.804 60.000 0.00 0.00 41.75 5.28
1931 4056 0.171231 TCGTTCTGATGCAGAGACCG 59.829 55.000 8.63 8.63 41.75 4.79
1932 4057 2.593346 ATCGTTCTGATGCAGAGACC 57.407 50.000 0.00 0.00 41.75 3.85
1941 4066 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
1942 4067 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
1943 4068 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
1944 4069 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
1945 4070 1.790755 TATGGCCGTATGCATCGTTC 58.209 50.000 0.19 2.49 43.89 3.95
1946 4071 2.472695 ATATGGCCGTATGCATCGTT 57.527 45.000 16.99 0.00 43.89 3.85
1947 4072 3.603158 TTATATGGCCGTATGCATCGT 57.397 42.857 25.15 2.60 43.89 3.73
1948 4073 6.597262 TTAATTATATGGCCGTATGCATCG 57.403 37.500 25.15 7.03 43.89 3.84
1951 4076 9.232473 TGTTTATTAATTATATGGCCGTATGCA 57.768 29.630 25.15 13.29 43.89 3.96
1956 4081 9.974980 CCTTTTGTTTATTAATTATATGGCCGT 57.025 29.630 1.35 1.35 0.00 5.68
1957 4082 9.974980 ACCTTTTGTTTATTAATTATATGGCCG 57.025 29.630 0.00 0.00 0.00 6.13
1973 4098 8.527810 TGAAGACTTATGTTGAACCTTTTGTTT 58.472 29.630 0.00 0.00 37.29 2.83
1974 4099 8.062065 TGAAGACTTATGTTGAACCTTTTGTT 57.938 30.769 0.00 0.00 40.81 2.83
1975 4100 7.639113 TGAAGACTTATGTTGAACCTTTTGT 57.361 32.000 0.00 0.00 0.00 2.83
1976 4101 6.638468 GCTGAAGACTTATGTTGAACCTTTTG 59.362 38.462 0.00 0.00 0.00 2.44
1977 4102 6.547510 AGCTGAAGACTTATGTTGAACCTTTT 59.452 34.615 0.00 0.00 0.00 2.27
1978 4103 6.064717 AGCTGAAGACTTATGTTGAACCTTT 58.935 36.000 0.00 0.00 0.00 3.11
1979 4104 5.625150 AGCTGAAGACTTATGTTGAACCTT 58.375 37.500 0.00 0.00 0.00 3.50
1980 4105 5.012561 AGAGCTGAAGACTTATGTTGAACCT 59.987 40.000 0.00 0.00 0.00 3.50
1981 4106 5.241662 AGAGCTGAAGACTTATGTTGAACC 58.758 41.667 0.00 0.00 0.00 3.62
1982 4107 5.928839 TGAGAGCTGAAGACTTATGTTGAAC 59.071 40.000 0.00 0.00 0.00 3.18
1983 4108 6.101650 TGAGAGCTGAAGACTTATGTTGAA 57.898 37.500 0.00 0.00 0.00 2.69
1984 4109 5.728637 TGAGAGCTGAAGACTTATGTTGA 57.271 39.130 0.00 0.00 0.00 3.18
1985 4110 6.791887 TTTGAGAGCTGAAGACTTATGTTG 57.208 37.500 0.00 0.00 0.00 3.33
1986 4111 7.992754 ATTTTGAGAGCTGAAGACTTATGTT 57.007 32.000 0.00 0.00 0.00 2.71
1987 4112 8.535335 TCTATTTTGAGAGCTGAAGACTTATGT 58.465 33.333 0.00 0.00 0.00 2.29
1988 4113 8.939201 TCTATTTTGAGAGCTGAAGACTTATG 57.061 34.615 0.00 0.00 0.00 1.90
1989 4114 9.377312 GTTCTATTTTGAGAGCTGAAGACTTAT 57.623 33.333 0.00 0.00 0.00 1.73
1990 4115 7.542477 CGTTCTATTTTGAGAGCTGAAGACTTA 59.458 37.037 0.00 0.00 0.00 2.24
1991 4116 6.367422 CGTTCTATTTTGAGAGCTGAAGACTT 59.633 38.462 0.00 0.00 0.00 3.01
1992 4117 5.866633 CGTTCTATTTTGAGAGCTGAAGACT 59.133 40.000 0.00 0.00 0.00 3.24
1993 4118 5.062809 CCGTTCTATTTTGAGAGCTGAAGAC 59.937 44.000 0.00 0.00 0.00 3.01
1994 4119 5.047306 TCCGTTCTATTTTGAGAGCTGAAGA 60.047 40.000 0.00 0.00 0.00 2.87
1995 4120 5.171476 TCCGTTCTATTTTGAGAGCTGAAG 58.829 41.667 0.00 0.00 0.00 3.02
1996 4121 5.147330 TCCGTTCTATTTTGAGAGCTGAA 57.853 39.130 0.00 0.00 0.00 3.02
1997 4122 4.801330 TCCGTTCTATTTTGAGAGCTGA 57.199 40.909 0.00 0.00 0.00 4.26
1998 4123 5.862924 TTTCCGTTCTATTTTGAGAGCTG 57.137 39.130 0.00 0.00 0.00 4.24
1999 4124 6.877611 TTTTTCCGTTCTATTTTGAGAGCT 57.122 33.333 0.00 0.00 0.00 4.09
2027 4152 8.035394 TCCTGTATTTTGTTAGCTCTTAGTGAG 58.965 37.037 0.00 0.00 45.33 3.51
2028 4153 7.903145 TCCTGTATTTTGTTAGCTCTTAGTGA 58.097 34.615 0.00 0.00 0.00 3.41
2029 4154 8.547967 TTCCTGTATTTTGTTAGCTCTTAGTG 57.452 34.615 0.00 0.00 0.00 2.74
2030 4155 9.220767 CTTTCCTGTATTTTGTTAGCTCTTAGT 57.779 33.333 0.00 0.00 0.00 2.24
2031 4156 8.178313 GCTTTCCTGTATTTTGTTAGCTCTTAG 58.822 37.037 0.00 0.00 0.00 2.18
2032 4157 7.120726 GGCTTTCCTGTATTTTGTTAGCTCTTA 59.879 37.037 0.00 0.00 0.00 2.10
2033 4158 6.071896 GGCTTTCCTGTATTTTGTTAGCTCTT 60.072 38.462 0.00 0.00 0.00 2.85
2034 4159 5.416013 GGCTTTCCTGTATTTTGTTAGCTCT 59.584 40.000 0.00 0.00 0.00 4.09
2035 4160 5.183140 TGGCTTTCCTGTATTTTGTTAGCTC 59.817 40.000 0.00 0.00 0.00 4.09
2036 4161 5.048013 GTGGCTTTCCTGTATTTTGTTAGCT 60.048 40.000 0.00 0.00 0.00 3.32
2037 4162 5.161358 GTGGCTTTCCTGTATTTTGTTAGC 58.839 41.667 0.00 0.00 0.00 3.09
2038 4163 6.325919 TGTGGCTTTCCTGTATTTTGTTAG 57.674 37.500 0.00 0.00 0.00 2.34
2039 4164 6.461788 GGTTGTGGCTTTCCTGTATTTTGTTA 60.462 38.462 0.00 0.00 0.00 2.41
2040 4165 5.356426 GTTGTGGCTTTCCTGTATTTTGTT 58.644 37.500 0.00 0.00 0.00 2.83
2041 4166 4.202212 GGTTGTGGCTTTCCTGTATTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
2042 4167 4.306600 GGTTGTGGCTTTCCTGTATTTTG 58.693 43.478 0.00 0.00 0.00 2.44
2043 4168 3.005367 CGGTTGTGGCTTTCCTGTATTTT 59.995 43.478 0.00 0.00 0.00 1.82
2044 4169 2.556622 CGGTTGTGGCTTTCCTGTATTT 59.443 45.455 0.00 0.00 0.00 1.40
2045 4170 2.159382 CGGTTGTGGCTTTCCTGTATT 58.841 47.619 0.00 0.00 0.00 1.89
2046 4171 1.613255 CCGGTTGTGGCTTTCCTGTAT 60.613 52.381 0.00 0.00 0.00 2.29
2047 4172 0.250553 CCGGTTGTGGCTTTCCTGTA 60.251 55.000 0.00 0.00 0.00 2.74
2048 4173 1.528309 CCGGTTGTGGCTTTCCTGT 60.528 57.895 0.00 0.00 0.00 4.00
2049 4174 3.354678 CCGGTTGTGGCTTTCCTG 58.645 61.111 0.00 0.00 0.00 3.86
2057 4182 4.787286 TATGCCGGCCGGTTGTGG 62.787 66.667 42.53 19.18 37.65 4.17
2058 4183 1.867919 TTTTATGCCGGCCGGTTGTG 61.868 55.000 42.53 19.97 37.65 3.33
2059 4184 1.179814 TTTTTATGCCGGCCGGTTGT 61.180 50.000 42.53 29.85 37.65 3.32
2060 4185 1.587054 TTTTTATGCCGGCCGGTTG 59.413 52.632 42.53 20.78 37.65 3.77
2061 4186 4.098847 TTTTTATGCCGGCCGGTT 57.901 50.000 42.53 31.86 37.65 4.44
2078 4203 9.343539 GGATAGGCATTTAGTGTTTCTATCTTT 57.656 33.333 0.00 0.00 36.24 2.52
2079 4204 8.718656 AGGATAGGCATTTAGTGTTTCTATCTT 58.281 33.333 0.00 0.00 36.24 2.40
2080 4205 8.268878 AGGATAGGCATTTAGTGTTTCTATCT 57.731 34.615 0.00 0.00 36.24 1.98
2084 4209 9.780186 GTAATAGGATAGGCATTTAGTGTTTCT 57.220 33.333 0.00 0.00 0.00 2.52
2085 4210 8.709646 CGTAATAGGATAGGCATTTAGTGTTTC 58.290 37.037 0.00 0.00 0.00 2.78
2086 4211 8.208903 ACGTAATAGGATAGGCATTTAGTGTTT 58.791 33.333 0.00 0.00 0.00 2.83
2087 4212 7.656137 CACGTAATAGGATAGGCATTTAGTGTT 59.344 37.037 0.00 0.00 0.00 3.32
2088 4213 7.014905 TCACGTAATAGGATAGGCATTTAGTGT 59.985 37.037 0.00 0.00 0.00 3.55
2089 4214 7.375834 TCACGTAATAGGATAGGCATTTAGTG 58.624 38.462 0.00 0.00 0.00 2.74
2090 4215 7.534723 TCACGTAATAGGATAGGCATTTAGT 57.465 36.000 0.00 0.00 0.00 2.24
2091 4216 8.470805 AGATCACGTAATAGGATAGGCATTTAG 58.529 37.037 0.00 0.00 0.00 1.85
2092 4217 8.251026 CAGATCACGTAATAGGATAGGCATTTA 58.749 37.037 0.00 0.00 0.00 1.40
2093 4218 7.099764 CAGATCACGTAATAGGATAGGCATTT 58.900 38.462 0.00 0.00 0.00 2.32
2094 4219 6.634805 CAGATCACGTAATAGGATAGGCATT 58.365 40.000 0.00 0.00 0.00 3.56
2095 4220 5.394663 GCAGATCACGTAATAGGATAGGCAT 60.395 44.000 0.00 0.00 0.00 4.40
2096 4221 4.082190 GCAGATCACGTAATAGGATAGGCA 60.082 45.833 0.00 0.00 0.00 4.75
2097 4222 4.425520 GCAGATCACGTAATAGGATAGGC 58.574 47.826 0.00 0.00 0.00 3.93
2098 4223 4.438880 CGGCAGATCACGTAATAGGATAGG 60.439 50.000 0.00 0.00 0.00 2.57
2099 4224 4.438880 CCGGCAGATCACGTAATAGGATAG 60.439 50.000 0.00 0.00 0.00 2.08
2100 4225 3.442625 CCGGCAGATCACGTAATAGGATA 59.557 47.826 0.00 0.00 0.00 2.59
2101 4226 2.231478 CCGGCAGATCACGTAATAGGAT 59.769 50.000 0.00 0.00 0.00 3.24
2102 4227 1.611977 CCGGCAGATCACGTAATAGGA 59.388 52.381 0.00 0.00 0.00 2.94
2103 4228 1.611977 TCCGGCAGATCACGTAATAGG 59.388 52.381 0.00 0.00 0.00 2.57
2104 4229 2.607282 GGTCCGGCAGATCACGTAATAG 60.607 54.545 0.00 0.00 0.00 1.73
2105 4230 1.338973 GGTCCGGCAGATCACGTAATA 59.661 52.381 0.00 0.00 0.00 0.98
2106 4231 0.104304 GGTCCGGCAGATCACGTAAT 59.896 55.000 0.00 0.00 0.00 1.89
2107 4232 0.968901 AGGTCCGGCAGATCACGTAA 60.969 55.000 0.00 0.00 0.00 3.18
2108 4233 0.968901 AAGGTCCGGCAGATCACGTA 60.969 55.000 0.00 0.00 0.00 3.57
2109 4234 1.827399 AAAGGTCCGGCAGATCACGT 61.827 55.000 0.00 0.00 0.00 4.49
2110 4235 1.079127 AAAGGTCCGGCAGATCACG 60.079 57.895 0.00 0.00 0.00 4.35
2111 4236 0.321653 ACAAAGGTCCGGCAGATCAC 60.322 55.000 0.00 0.00 0.00 3.06
2112 4237 0.321564 CACAAAGGTCCGGCAGATCA 60.322 55.000 0.00 0.00 0.00 2.92
2113 4238 0.036388 TCACAAAGGTCCGGCAGATC 60.036 55.000 0.00 0.00 0.00 2.75
2114 4239 0.620556 ATCACAAAGGTCCGGCAGAT 59.379 50.000 0.00 0.00 0.00 2.90
2115 4240 0.036388 GATCACAAAGGTCCGGCAGA 60.036 55.000 0.00 0.00 0.00 4.26
2116 4241 1.026718 GGATCACAAAGGTCCGGCAG 61.027 60.000 0.00 0.00 0.00 4.85
2117 4242 1.002624 GGATCACAAAGGTCCGGCA 60.003 57.895 0.00 0.00 0.00 5.69
2118 4243 3.905249 GGATCACAAAGGTCCGGC 58.095 61.111 0.00 0.00 0.00 6.13
2121 4246 0.744771 GGAGCGGATCACAAAGGTCC 60.745 60.000 0.00 1.25 42.82 4.46
2122 4247 0.036388 TGGAGCGGATCACAAAGGTC 60.036 55.000 0.00 0.00 0.00 3.85
2123 4248 0.620556 ATGGAGCGGATCACAAAGGT 59.379 50.000 0.00 0.00 0.00 3.50
2124 4249 1.134280 AGATGGAGCGGATCACAAAGG 60.134 52.381 0.00 0.00 0.00 3.11
2125 4250 2.322355 AGATGGAGCGGATCACAAAG 57.678 50.000 0.00 0.00 0.00 2.77
2126 4251 2.787473 AAGATGGAGCGGATCACAAA 57.213 45.000 0.00 0.00 0.00 2.83
2127 4252 4.422073 AATAAGATGGAGCGGATCACAA 57.578 40.909 0.00 0.00 0.00 3.33
2128 4253 4.422073 AAATAAGATGGAGCGGATCACA 57.578 40.909 0.00 0.00 0.00 3.58
2221 4346 8.779096 TTCCTTGTAATTTTAAGGGGTGTTTA 57.221 30.769 16.12 0.00 42.92 2.01
2239 4364 3.412386 CGGGAAAGTGATTCTTCCTTGT 58.588 45.455 1.19 0.00 38.18 3.16
2261 4386 1.207329 AGAAACTAGGGTCCGTCATGC 59.793 52.381 0.00 0.00 0.00 4.06
2267 4392 3.243002 CGTAGCTAAGAAACTAGGGTCCG 60.243 52.174 0.00 0.00 0.00 4.79
2285 4410 1.373246 TTTTGGGTCGCCGTCGTAG 60.373 57.895 0.00 0.00 36.96 3.51
2287 4412 2.968697 GTTTTGGGTCGCCGTCGT 60.969 61.111 0.00 0.00 36.96 4.34
2290 4415 2.031465 ATCGTTTTGGGTCGCCGT 59.969 55.556 0.00 0.00 0.00 5.68
2304 4429 3.057315 ACAACATCAAAAAGGAGGCATCG 60.057 43.478 0.00 0.00 0.00 3.84
2314 4439 6.017770 ACGGTTATTCTCGACAACATCAAAAA 60.018 34.615 0.00 0.00 0.00 1.94
2327 4452 3.597162 CGCCGACGGTTATTCTCG 58.403 61.111 16.73 4.50 34.97 4.04
2348 4473 1.082104 GTCTTCCGCAACAAAGCCG 60.082 57.895 0.00 0.00 0.00 5.52
2350 4475 4.515107 CGTCTTCCGCAACAAAGC 57.485 55.556 0.00 0.00 0.00 3.51
2385 4510 2.094659 GTGCACGTGGACGATCTGG 61.095 63.158 24.56 0.00 43.02 3.86
2401 4526 0.176680 AGCCCGATTCTGCACTAGTG 59.823 55.000 18.93 18.93 0.00 2.74
2402 4527 0.461961 GAGCCCGATTCTGCACTAGT 59.538 55.000 0.00 0.00 0.00 2.57
2403 4528 0.749649 AGAGCCCGATTCTGCACTAG 59.250 55.000 0.00 0.00 0.00 2.57
2404 4529 1.957177 CTAGAGCCCGATTCTGCACTA 59.043 52.381 0.00 0.00 30.93 2.74
2405 4530 0.749649 CTAGAGCCCGATTCTGCACT 59.250 55.000 0.00 0.00 33.04 4.40
2406 4531 0.878086 GCTAGAGCCCGATTCTGCAC 60.878 60.000 0.00 0.00 34.31 4.57
2407 4532 1.443407 GCTAGAGCCCGATTCTGCA 59.557 57.895 0.00 0.00 34.31 4.41
2408 4533 1.663074 CGCTAGAGCCCGATTCTGC 60.663 63.158 0.00 0.00 37.91 4.26
2409 4534 1.663074 GCGCTAGAGCCCGATTCTG 60.663 63.158 7.30 0.00 37.91 3.02
2410 4535 2.731374 GCGCTAGAGCCCGATTCT 59.269 61.111 7.30 0.00 37.91 2.40
2418 4543 2.603135 TTACGAACCGGCGCTAGAGC 62.603 60.000 10.35 10.35 37.78 4.09
2419 4544 0.591741 CTTACGAACCGGCGCTAGAG 60.592 60.000 7.64 0.00 33.86 2.43
2420 4545 1.430632 CTTACGAACCGGCGCTAGA 59.569 57.895 7.64 0.00 33.86 2.43
2421 4546 1.588139 CCTTACGAACCGGCGCTAG 60.588 63.158 7.64 0.59 33.86 3.42
2422 4547 2.491152 CCTTACGAACCGGCGCTA 59.509 61.111 7.64 0.00 33.86 4.26
2423 4548 4.446413 CCCTTACGAACCGGCGCT 62.446 66.667 7.64 0.00 33.86 5.92
2426 4551 3.617143 AAGGCCCTTACGAACCGGC 62.617 63.158 0.00 0.00 40.85 6.13
2427 4552 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
2428 4553 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
2429 4554 2.353323 CACTAAAGGCCCTTACGAACC 58.647 52.381 0.00 0.00 0.00 3.62
2430 4555 1.736126 GCACTAAAGGCCCTTACGAAC 59.264 52.381 0.00 0.00 0.00 3.95
2431 4556 1.339342 GGCACTAAAGGCCCTTACGAA 60.339 52.381 0.00 0.00 45.87 3.85
2432 4557 0.251073 GGCACTAAAGGCCCTTACGA 59.749 55.000 0.00 0.00 45.87 3.43
2433 4558 2.776659 GGCACTAAAGGCCCTTACG 58.223 57.895 0.00 0.00 45.87 3.18
2440 4565 0.679960 ATGGAACCGGCACTAAAGGC 60.680 55.000 0.00 0.00 0.00 4.35
2441 4566 2.681344 GTTATGGAACCGGCACTAAAGG 59.319 50.000 0.00 0.00 0.00 3.11
2442 4567 2.681344 GGTTATGGAACCGGCACTAAAG 59.319 50.000 0.00 0.00 45.73 1.85
2443 4568 2.713877 GGTTATGGAACCGGCACTAAA 58.286 47.619 0.00 0.00 45.73 1.85
2444 4569 2.406596 GGTTATGGAACCGGCACTAA 57.593 50.000 0.00 0.00 45.73 2.24
2453 4578 2.681344 CCTTTAGTGCCGGTTATGGAAC 59.319 50.000 1.90 0.00 37.90 3.62
2454 4579 2.356330 CCCTTTAGTGCCGGTTATGGAA 60.356 50.000 1.90 0.00 0.00 3.53
2455 4580 1.210967 CCCTTTAGTGCCGGTTATGGA 59.789 52.381 1.90 0.00 0.00 3.41
2456 4581 1.064979 ACCCTTTAGTGCCGGTTATGG 60.065 52.381 1.90 0.00 0.00 2.74
2457 4582 2.014128 CACCCTTTAGTGCCGGTTATG 58.986 52.381 1.90 0.00 0.00 1.90
2458 4583 1.064979 CCACCCTTTAGTGCCGGTTAT 60.065 52.381 1.90 0.00 36.38 1.89
2459 4584 0.325602 CCACCCTTTAGTGCCGGTTA 59.674 55.000 1.90 0.00 36.38 2.85
2460 4585 1.074248 CCACCCTTTAGTGCCGGTT 59.926 57.895 1.90 0.00 36.38 4.44
2461 4586 2.754375 CCACCCTTTAGTGCCGGT 59.246 61.111 1.90 0.00 36.38 5.28
2462 4587 2.045340 CCCACCCTTTAGTGCCGG 60.045 66.667 0.00 0.00 36.38 6.13
2463 4588 2.045340 CCCCACCCTTTAGTGCCG 60.045 66.667 0.00 0.00 36.38 5.69
2464 4589 1.001269 GTCCCCACCCTTTAGTGCC 60.001 63.158 0.00 0.00 36.38 5.01
2465 4590 1.282382 TAGTCCCCACCCTTTAGTGC 58.718 55.000 0.00 0.00 36.38 4.40
2466 4591 3.308188 CCTTTAGTCCCCACCCTTTAGTG 60.308 52.174 0.00 0.00 37.51 2.74
2467 4592 2.917600 CCTTTAGTCCCCACCCTTTAGT 59.082 50.000 0.00 0.00 0.00 2.24
2468 4593 2.356844 GCCTTTAGTCCCCACCCTTTAG 60.357 54.545 0.00 0.00 0.00 1.85
2469 4594 1.637035 GCCTTTAGTCCCCACCCTTTA 59.363 52.381 0.00 0.00 0.00 1.85
2470 4595 0.408309 GCCTTTAGTCCCCACCCTTT 59.592 55.000 0.00 0.00 0.00 3.11
2471 4596 1.506907 GGCCTTTAGTCCCCACCCTT 61.507 60.000 0.00 0.00 0.00 3.95
2472 4597 1.929088 GGCCTTTAGTCCCCACCCT 60.929 63.158 0.00 0.00 0.00 4.34
2473 4598 2.681591 GGCCTTTAGTCCCCACCC 59.318 66.667 0.00 0.00 0.00 4.61
2474 4599 2.681591 GGGCCTTTAGTCCCCACC 59.318 66.667 0.84 0.00 38.70 4.61
2491 4616 0.176449 CGAACCGGTACTAAAGGGGG 59.824 60.000 8.00 0.00 0.00 5.40
2492 4617 0.176449 CCGAACCGGTACTAAAGGGG 59.824 60.000 8.00 0.00 42.73 4.79
2493 4618 3.746900 CCGAACCGGTACTAAAGGG 57.253 57.895 8.00 0.00 42.73 3.95
2511 4636 3.018840 CTTTACCGCCGGTTCGTGC 62.019 63.158 16.82 0.00 37.09 5.34
2512 4637 1.665599 ACTTTACCGCCGGTTCGTG 60.666 57.895 16.82 5.37 37.09 4.35
2513 4638 1.665599 CACTTTACCGCCGGTTCGT 60.666 57.895 16.82 6.53 37.09 3.85
2514 4639 3.018840 GCACTTTACCGCCGGTTCG 62.019 63.158 16.82 5.80 37.09 3.95
2515 4640 2.683859 GGCACTTTACCGCCGGTTC 61.684 63.158 16.82 0.00 38.82 3.62
2516 4641 2.670592 GGCACTTTACCGCCGGTT 60.671 61.111 16.82 0.00 38.82 4.44
2521 4646 2.951458 GTGGTGGCACTTTACCGC 59.049 61.111 18.45 2.98 39.87 5.68
2522 4647 1.595929 ACGTGGTGGCACTTTACCG 60.596 57.895 18.45 14.03 39.87 4.02
2523 4648 1.946267 CACGTGGTGGCACTTTACC 59.054 57.895 18.45 0.11 37.48 2.85
2533 4658 3.036084 GTCTCGTGCCACGTGGTG 61.036 66.667 33.92 23.62 43.14 4.17
2534 4659 3.499929 CTGTCTCGTGCCACGTGGT 62.500 63.158 33.92 0.00 43.14 4.16
2535 4660 2.734723 CTGTCTCGTGCCACGTGG 60.735 66.667 30.66 30.66 43.14 4.94
2536 4661 2.734723 CCTGTCTCGTGCCACGTG 60.735 66.667 17.83 15.15 43.14 4.49
2537 4662 4.664677 GCCTGTCTCGTGCCACGT 62.665 66.667 17.83 0.00 43.14 4.49
2556 4681 0.392729 TAATGGTTTACCCGCACCCG 60.393 55.000 0.00 0.00 35.15 5.28
2557 4682 1.340308 ACTAATGGTTTACCCGCACCC 60.340 52.381 0.00 0.00 35.15 4.61
2558 4683 2.118313 ACTAATGGTTTACCCGCACC 57.882 50.000 0.00 0.00 35.15 5.01
2559 4684 2.938451 GGTACTAATGGTTTACCCGCAC 59.062 50.000 0.00 0.00 35.15 5.34
2560 4685 2.418471 CGGTACTAATGGTTTACCCGCA 60.418 50.000 0.00 0.00 35.15 5.69
2561 4686 2.204237 CGGTACTAATGGTTTACCCGC 58.796 52.381 0.00 0.00 35.15 6.13
2562 4687 2.168313 ACCGGTACTAATGGTTTACCCG 59.832 50.000 4.49 0.00 35.15 5.28
2563 4688 3.912496 ACCGGTACTAATGGTTTACCC 57.088 47.619 4.49 0.00 29.87 3.69
2564 4689 3.940852 CCAACCGGTACTAATGGTTTACC 59.059 47.826 8.00 0.00 43.23 2.85
2565 4690 4.578871 ACCAACCGGTACTAATGGTTTAC 58.421 43.478 20.02 0.00 46.71 2.01
2566 4691 4.906747 ACCAACCGGTACTAATGGTTTA 57.093 40.909 20.02 0.00 46.71 2.01
2567 4692 3.793819 ACCAACCGGTACTAATGGTTT 57.206 42.857 20.02 1.19 46.71 3.27
2592 4717 3.191791 CCCAAACATTTAGTACCGGTTGG 59.808 47.826 15.04 10.33 42.84 3.77
2593 4718 3.191791 CCCCAAACATTTAGTACCGGTTG 59.808 47.826 15.04 6.22 0.00 3.77
2594 4719 3.423749 CCCCAAACATTTAGTACCGGTT 58.576 45.455 15.04 0.00 0.00 4.44
2595 4720 2.291089 CCCCCAAACATTTAGTACCGGT 60.291 50.000 13.98 13.98 0.00 5.28
2596 4721 2.371306 CCCCCAAACATTTAGTACCGG 58.629 52.381 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.