Multiple sequence alignment - TraesCS5D01G497300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G497300 chr5D 100.000 4946 0 0 1 4946 527494100 527499045 0.000000e+00 9134.0
1 TraesCS5D01G497300 chr5D 90.909 88 8 0 291 378 294594434 294594347 8.700000e-23 119.0
2 TraesCS5D01G497300 chr5B 92.846 4473 178 66 532 4946 664018274 664022662 0.000000e+00 6357.0
3 TraesCS5D01G497300 chr5B 89.552 402 31 8 1031 1422 678674103 678674503 2.660000e-137 499.0
4 TraesCS5D01G497300 chr5A 93.686 4276 186 30 687 4946 654614002 654618209 0.000000e+00 6324.0
5 TraesCS5D01G497300 chr2A 88.561 542 38 6 1031 1572 97847987 97848504 1.940000e-178 636.0
6 TraesCS5D01G497300 chr6B 93.333 420 19 1 1147 1566 173904640 173904230 3.270000e-171 612.0
7 TraesCS5D01G497300 chr1A 84.663 163 17 5 222 378 537360080 537360240 6.630000e-34 156.0
8 TraesCS5D01G497300 chr6D 95.506 89 3 1 291 378 13155475 13155563 1.860000e-29 141.0
9 TraesCS5D01G497300 chr6D 84.146 82 8 1 200 281 905892 905968 1.910000e-09 75.0
10 TraesCS5D01G497300 chr4D 91.111 90 7 1 291 379 347523897 347523986 2.420000e-23 121.0
11 TraesCS5D01G497300 chr4D 87.379 103 9 4 291 390 157970933 157970832 1.130000e-21 115.0
12 TraesCS5D01G497300 chr3D 91.011 89 7 1 291 378 236628890 236628802 8.700000e-23 119.0
13 TraesCS5D01G497300 chr3D 93.443 61 4 0 222 282 116156223 116156163 1.900000e-14 91.6
14 TraesCS5D01G497300 chr3B 91.011 89 7 1 291 378 225815354 225815442 8.700000e-23 119.0
15 TraesCS5D01G497300 chr3B 91.011 89 7 1 291 378 225829553 225829641 8.700000e-23 119.0
16 TraesCS5D01G497300 chr3B 91.011 89 7 1 291 378 225865753 225865841 8.700000e-23 119.0
17 TraesCS5D01G497300 chr3B 82.105 95 11 3 189 282 595539295 595539384 5.310000e-10 76.8
18 TraesCS5D01G497300 chr1D 91.011 89 7 1 291 378 111711708 111711796 8.700000e-23 119.0
19 TraesCS5D01G497300 chr1B 90.667 75 3 4 211 284 573135500 573135429 4.080000e-16 97.1
20 TraesCS5D01G497300 chr1B 92.188 64 4 1 222 284 20681281 20681344 6.820000e-14 89.8
21 TraesCS5D01G497300 chr7D 93.443 61 4 0 222 282 54151096 54151036 1.900000e-14 91.6
22 TraesCS5D01G497300 chr2D 92.188 64 4 1 222 284 403251443 403251380 6.820000e-14 89.8
23 TraesCS5D01G497300 chr2D 86.585 82 8 3 200 281 284551500 284551422 2.450000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G497300 chr5D 527494100 527499045 4945 False 9134 9134 100.000 1 4946 1 chr5D.!!$F1 4945
1 TraesCS5D01G497300 chr5B 664018274 664022662 4388 False 6357 6357 92.846 532 4946 1 chr5B.!!$F1 4414
2 TraesCS5D01G497300 chr5A 654614002 654618209 4207 False 6324 6324 93.686 687 4946 1 chr5A.!!$F1 4259
3 TraesCS5D01G497300 chr2A 97847987 97848504 517 False 636 636 88.561 1031 1572 1 chr2A.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 505 0.038744 ACTTGGCTCTGGGAATGGTG 59.961 55.0 0.0 0.0 0.00 4.17 F
1818 1850 0.036671 CGGTTGGGAGGTTCCTGTAC 60.037 60.0 0.0 0.0 36.57 2.90 F
2032 2064 0.756294 TGTGTTGTCCGATGAGTGGT 59.244 50.0 0.0 0.0 0.00 4.16 F
2548 2580 1.064003 TGAATGGGTACACTGCCTGT 58.936 50.0 0.0 0.0 36.82 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2045 0.756294 ACCACTCATCGGACAACACA 59.244 50.0 0.00 0.00 0.00 3.72 R
2911 2943 1.568504 TCGGACACCAGCCTTTCTAT 58.431 50.0 0.00 0.00 0.00 1.98 R
3898 3938 0.179056 CCAACTCGTTCACCCACAGT 60.179 55.0 0.00 0.00 0.00 3.55 R
4489 4562 0.240945 ATGTAACGGCTGCAACTTGC 59.759 50.0 6.82 6.82 45.29 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.009370 GGGTGAAAGTAGCTGATATCCC 57.991 50.000 0.00 0.00 0.00 3.85
22 23 3.555168 GGGTGAAAGTAGCTGATATCCCG 60.555 52.174 0.00 0.00 0.00 5.14
23 24 3.555168 GGTGAAAGTAGCTGATATCCCGG 60.555 52.174 0.00 0.00 0.00 5.73
24 25 3.069729 GTGAAAGTAGCTGATATCCCGGT 59.930 47.826 0.00 0.00 0.00 5.28
25 26 3.321111 TGAAAGTAGCTGATATCCCGGTC 59.679 47.826 0.00 0.00 0.00 4.79
26 27 2.677542 AGTAGCTGATATCCCGGTCA 57.322 50.000 0.00 0.00 0.00 4.02
27 28 3.176924 AGTAGCTGATATCCCGGTCAT 57.823 47.619 0.00 0.00 0.00 3.06
28 29 4.317530 AGTAGCTGATATCCCGGTCATA 57.682 45.455 0.00 0.00 0.00 2.15
29 30 4.873010 AGTAGCTGATATCCCGGTCATAT 58.127 43.478 0.00 1.34 0.00 1.78
30 31 5.273208 AGTAGCTGATATCCCGGTCATATT 58.727 41.667 0.00 0.00 0.00 1.28
31 32 5.721960 AGTAGCTGATATCCCGGTCATATTT 59.278 40.000 0.00 0.00 0.00 1.40
32 33 4.836825 AGCTGATATCCCGGTCATATTTG 58.163 43.478 0.00 1.00 0.00 2.32
33 34 4.287067 AGCTGATATCCCGGTCATATTTGT 59.713 41.667 0.00 0.00 0.00 2.83
34 35 5.003804 GCTGATATCCCGGTCATATTTGTT 58.996 41.667 0.00 0.00 0.00 2.83
35 36 5.106555 GCTGATATCCCGGTCATATTTGTTG 60.107 44.000 0.00 0.00 0.00 3.33
36 37 5.935945 TGATATCCCGGTCATATTTGTTGT 58.064 37.500 0.00 0.00 0.00 3.32
37 38 6.361433 TGATATCCCGGTCATATTTGTTGTT 58.639 36.000 0.00 0.00 0.00 2.83
38 39 6.485313 TGATATCCCGGTCATATTTGTTGTTC 59.515 38.462 0.00 0.00 0.00 3.18
39 40 3.349022 TCCCGGTCATATTTGTTGTTCC 58.651 45.455 0.00 0.00 0.00 3.62
40 41 3.009695 TCCCGGTCATATTTGTTGTTCCT 59.990 43.478 0.00 0.00 0.00 3.36
41 42 3.128589 CCCGGTCATATTTGTTGTTCCTG 59.871 47.826 0.00 0.00 0.00 3.86
42 43 3.427503 CCGGTCATATTTGTTGTTCCTGC 60.428 47.826 0.00 0.00 0.00 4.85
43 44 3.440173 CGGTCATATTTGTTGTTCCTGCT 59.560 43.478 0.00 0.00 0.00 4.24
44 45 4.082787 CGGTCATATTTGTTGTTCCTGCTT 60.083 41.667 0.00 0.00 0.00 3.91
45 46 5.564651 CGGTCATATTTGTTGTTCCTGCTTT 60.565 40.000 0.00 0.00 0.00 3.51
46 47 5.863935 GGTCATATTTGTTGTTCCTGCTTTC 59.136 40.000 0.00 0.00 0.00 2.62
47 48 5.863935 GTCATATTTGTTGTTCCTGCTTTCC 59.136 40.000 0.00 0.00 0.00 3.13
48 49 5.774690 TCATATTTGTTGTTCCTGCTTTCCT 59.225 36.000 0.00 0.00 0.00 3.36
49 50 6.267471 TCATATTTGTTGTTCCTGCTTTCCTT 59.733 34.615 0.00 0.00 0.00 3.36
50 51 4.385358 TTTGTTGTTCCTGCTTTCCTTC 57.615 40.909 0.00 0.00 0.00 3.46
51 52 3.297134 TGTTGTTCCTGCTTTCCTTCT 57.703 42.857 0.00 0.00 0.00 2.85
52 53 3.631250 TGTTGTTCCTGCTTTCCTTCTT 58.369 40.909 0.00 0.00 0.00 2.52
53 54 3.632145 TGTTGTTCCTGCTTTCCTTCTTC 59.368 43.478 0.00 0.00 0.00 2.87
54 55 2.863809 TGTTCCTGCTTTCCTTCTTCC 58.136 47.619 0.00 0.00 0.00 3.46
55 56 2.443255 TGTTCCTGCTTTCCTTCTTCCT 59.557 45.455 0.00 0.00 0.00 3.36
56 57 3.117512 TGTTCCTGCTTTCCTTCTTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
57 58 3.884037 TCCTGCTTTCCTTCTTCCTTT 57.116 42.857 0.00 0.00 0.00 3.11
58 59 3.756117 TCCTGCTTTCCTTCTTCCTTTC 58.244 45.455 0.00 0.00 0.00 2.62
59 60 3.138283 TCCTGCTTTCCTTCTTCCTTTCA 59.862 43.478 0.00 0.00 0.00 2.69
60 61 4.085009 CCTGCTTTCCTTCTTCCTTTCAT 58.915 43.478 0.00 0.00 0.00 2.57
61 62 4.082354 CCTGCTTTCCTTCTTCCTTTCATG 60.082 45.833 0.00 0.00 0.00 3.07
62 63 3.828451 TGCTTTCCTTCTTCCTTTCATGG 59.172 43.478 0.00 0.00 0.00 3.66
63 64 3.829026 GCTTTCCTTCTTCCTTTCATGGT 59.171 43.478 0.00 0.00 0.00 3.55
64 65 5.010282 GCTTTCCTTCTTCCTTTCATGGTA 58.990 41.667 0.00 0.00 0.00 3.25
65 66 5.654209 GCTTTCCTTCTTCCTTTCATGGTAT 59.346 40.000 0.00 0.00 0.00 2.73
66 67 6.153510 GCTTTCCTTCTTCCTTTCATGGTATT 59.846 38.462 0.00 0.00 0.00 1.89
67 68 7.310052 GCTTTCCTTCTTCCTTTCATGGTATTT 60.310 37.037 0.00 0.00 0.00 1.40
68 69 8.491045 TTTCCTTCTTCCTTTCATGGTATTTT 57.509 30.769 0.00 0.00 0.00 1.82
69 70 7.466746 TCCTTCTTCCTTTCATGGTATTTTG 57.533 36.000 0.00 0.00 0.00 2.44
70 71 7.010160 TCCTTCTTCCTTTCATGGTATTTTGT 58.990 34.615 0.00 0.00 0.00 2.83
71 72 7.039784 TCCTTCTTCCTTTCATGGTATTTTGTG 60.040 37.037 0.00 0.00 0.00 3.33
72 73 7.255942 CCTTCTTCCTTTCATGGTATTTTGTGT 60.256 37.037 0.00 0.00 0.00 3.72
73 74 7.214467 TCTTCCTTTCATGGTATTTTGTGTC 57.786 36.000 0.00 0.00 0.00 3.67
74 75 5.975693 TCCTTTCATGGTATTTTGTGTCC 57.024 39.130 0.00 0.00 0.00 4.02
75 76 4.770010 TCCTTTCATGGTATTTTGTGTCCC 59.230 41.667 0.00 0.00 0.00 4.46
76 77 4.526262 CCTTTCATGGTATTTTGTGTCCCA 59.474 41.667 0.00 0.00 0.00 4.37
77 78 5.011533 CCTTTCATGGTATTTTGTGTCCCAA 59.988 40.000 0.00 0.00 0.00 4.12
78 79 5.720371 TTCATGGTATTTTGTGTCCCAAG 57.280 39.130 0.00 0.00 33.75 3.61
79 80 4.735369 TCATGGTATTTTGTGTCCCAAGT 58.265 39.130 0.00 0.00 33.75 3.16
80 81 5.882040 TCATGGTATTTTGTGTCCCAAGTA 58.118 37.500 0.00 0.00 33.75 2.24
81 82 5.708230 TCATGGTATTTTGTGTCCCAAGTAC 59.292 40.000 0.00 0.00 33.75 2.73
82 83 5.050126 TGGTATTTTGTGTCCCAAGTACA 57.950 39.130 0.00 0.00 33.75 2.90
83 84 4.822896 TGGTATTTTGTGTCCCAAGTACAC 59.177 41.667 0.00 0.00 45.96 2.90
88 89 1.797025 GTGTCCCAAGTACACAGCTC 58.203 55.000 0.00 0.00 45.26 4.09
89 90 0.317160 TGTCCCAAGTACACAGCTCG 59.683 55.000 0.00 0.00 0.00 5.03
90 91 0.601558 GTCCCAAGTACACAGCTCGA 59.398 55.000 0.00 0.00 0.00 4.04
91 92 1.204941 GTCCCAAGTACACAGCTCGAT 59.795 52.381 0.00 0.00 0.00 3.59
92 93 1.899814 TCCCAAGTACACAGCTCGATT 59.100 47.619 0.00 0.00 0.00 3.34
93 94 2.094182 TCCCAAGTACACAGCTCGATTC 60.094 50.000 0.00 0.00 0.00 2.52
94 95 1.920574 CCAAGTACACAGCTCGATTCG 59.079 52.381 0.00 0.00 0.00 3.34
95 96 2.415491 CCAAGTACACAGCTCGATTCGA 60.415 50.000 8.70 8.70 0.00 3.71
96 97 2.546195 AGTACACAGCTCGATTCGAC 57.454 50.000 4.29 2.83 0.00 4.20
97 98 1.181001 GTACACAGCTCGATTCGACG 58.819 55.000 4.29 3.16 0.00 5.12
98 99 0.098200 TACACAGCTCGATTCGACGG 59.902 55.000 4.29 6.05 0.00 4.79
99 100 1.874019 CACAGCTCGATTCGACGGG 60.874 63.158 4.29 0.00 36.78 5.28
100 101 2.044555 ACAGCTCGATTCGACGGGA 61.045 57.895 4.29 0.00 35.62 5.14
101 102 1.360551 CAGCTCGATTCGACGGGAT 59.639 57.895 4.29 0.00 35.62 3.85
102 103 0.936764 CAGCTCGATTCGACGGGATG 60.937 60.000 4.29 0.00 43.22 3.51
103 104 1.101635 AGCTCGATTCGACGGGATGA 61.102 55.000 4.29 0.00 35.62 2.92
104 105 0.039074 GCTCGATTCGACGGGATGAT 60.039 55.000 4.29 0.00 35.62 2.45
105 106 1.691127 CTCGATTCGACGGGATGATG 58.309 55.000 4.29 0.00 35.62 3.07
106 107 0.313987 TCGATTCGACGGGATGATGG 59.686 55.000 4.29 0.00 0.00 3.51
107 108 0.313987 CGATTCGACGGGATGATGGA 59.686 55.000 0.00 0.00 0.00 3.41
108 109 1.667177 CGATTCGACGGGATGATGGAG 60.667 57.143 0.00 0.00 0.00 3.86
109 110 0.681733 ATTCGACGGGATGATGGAGG 59.318 55.000 0.00 0.00 0.00 4.30
110 111 1.399744 TTCGACGGGATGATGGAGGG 61.400 60.000 0.00 0.00 0.00 4.30
111 112 1.832608 CGACGGGATGATGGAGGGA 60.833 63.158 0.00 0.00 0.00 4.20
112 113 1.749033 GACGGGATGATGGAGGGAC 59.251 63.158 0.00 0.00 0.00 4.46
113 114 1.002921 ACGGGATGATGGAGGGACA 59.997 57.895 0.00 0.00 0.00 4.02
114 115 1.338136 ACGGGATGATGGAGGGACAC 61.338 60.000 0.00 0.00 0.00 3.67
115 116 1.050988 CGGGATGATGGAGGGACACT 61.051 60.000 0.00 0.00 0.00 3.55
116 117 0.761802 GGGATGATGGAGGGACACTC 59.238 60.000 0.00 0.00 45.84 3.51
125 126 2.990066 GAGGGACACTCGGAAATCAT 57.010 50.000 0.00 0.00 36.29 2.45
126 127 2.555199 GAGGGACACTCGGAAATCATG 58.445 52.381 0.00 0.00 36.29 3.07
127 128 2.168521 GAGGGACACTCGGAAATCATGA 59.831 50.000 0.00 0.00 36.29 3.07
128 129 2.571653 AGGGACACTCGGAAATCATGAA 59.428 45.455 0.00 0.00 0.00 2.57
129 130 2.678336 GGGACACTCGGAAATCATGAAC 59.322 50.000 0.00 0.00 0.00 3.18
130 131 2.348666 GGACACTCGGAAATCATGAACG 59.651 50.000 0.00 2.74 0.00 3.95
131 132 2.993899 GACACTCGGAAATCATGAACGT 59.006 45.455 0.00 0.00 0.00 3.99
132 133 2.993899 ACACTCGGAAATCATGAACGTC 59.006 45.455 0.00 0.00 0.00 4.34
133 134 3.254060 CACTCGGAAATCATGAACGTCT 58.746 45.455 0.00 0.00 0.00 4.18
134 135 4.082408 ACACTCGGAAATCATGAACGTCTA 60.082 41.667 0.00 0.00 0.00 2.59
135 136 4.265556 CACTCGGAAATCATGAACGTCTAC 59.734 45.833 0.00 0.00 0.00 2.59
136 137 4.082408 ACTCGGAAATCATGAACGTCTACA 60.082 41.667 0.00 0.00 0.00 2.74
137 138 5.006153 TCGGAAATCATGAACGTCTACAT 57.994 39.130 0.00 0.00 0.00 2.29
138 139 6.139048 TCGGAAATCATGAACGTCTACATA 57.861 37.500 0.00 0.00 0.00 2.29
139 140 6.206498 TCGGAAATCATGAACGTCTACATAG 58.794 40.000 0.00 0.00 0.00 2.23
140 141 5.107837 CGGAAATCATGAACGTCTACATAGC 60.108 44.000 0.00 0.00 0.00 2.97
141 142 5.753438 GGAAATCATGAACGTCTACATAGCA 59.247 40.000 0.00 0.00 0.00 3.49
142 143 6.257849 GGAAATCATGAACGTCTACATAGCAA 59.742 38.462 0.00 0.00 0.00 3.91
143 144 6.834959 AATCATGAACGTCTACATAGCAAG 57.165 37.500 0.00 0.00 0.00 4.01
144 145 4.112634 TCATGAACGTCTACATAGCAAGC 58.887 43.478 0.00 0.00 0.00 4.01
145 146 3.868757 TGAACGTCTACATAGCAAGCT 57.131 42.857 0.00 0.00 0.00 3.74
146 147 4.188247 TGAACGTCTACATAGCAAGCTT 57.812 40.909 0.00 0.00 0.00 3.74
147 148 3.926527 TGAACGTCTACATAGCAAGCTTG 59.073 43.478 22.44 22.44 0.00 4.01
148 149 3.868757 ACGTCTACATAGCAAGCTTGA 57.131 42.857 30.39 10.67 0.00 3.02
149 150 4.188247 ACGTCTACATAGCAAGCTTGAA 57.812 40.909 30.39 16.88 0.00 2.69
150 151 4.566004 ACGTCTACATAGCAAGCTTGAAA 58.434 39.130 30.39 16.51 0.00 2.69
151 152 4.994852 ACGTCTACATAGCAAGCTTGAAAA 59.005 37.500 30.39 13.92 0.00 2.29
152 153 5.468746 ACGTCTACATAGCAAGCTTGAAAAA 59.531 36.000 30.39 11.39 0.00 1.94
174 175 7.504924 AAAACGTGTTATATCATGGTATGGG 57.495 36.000 8.84 0.00 0.00 4.00
175 176 6.428083 AACGTGTTATATCATGGTATGGGA 57.572 37.500 8.84 0.00 0.00 4.37
176 177 6.620877 ACGTGTTATATCATGGTATGGGAT 57.379 37.500 8.84 0.00 0.00 3.85
177 178 6.406370 ACGTGTTATATCATGGTATGGGATG 58.594 40.000 8.84 0.67 0.00 3.51
178 179 5.817296 CGTGTTATATCATGGTATGGGATGG 59.183 44.000 8.84 0.00 0.00 3.51
179 180 6.351796 CGTGTTATATCATGGTATGGGATGGA 60.352 42.308 8.84 0.00 0.00 3.41
180 181 7.402054 GTGTTATATCATGGTATGGGATGGAA 58.598 38.462 8.84 0.00 0.00 3.53
181 182 7.554118 GTGTTATATCATGGTATGGGATGGAAG 59.446 40.741 8.84 0.00 0.00 3.46
182 183 5.722172 ATATCATGGTATGGGATGGAAGG 57.278 43.478 0.00 0.00 0.00 3.46
183 184 3.073411 TCATGGTATGGGATGGAAGGA 57.927 47.619 0.00 0.00 0.00 3.36
184 185 2.981784 TCATGGTATGGGATGGAAGGAG 59.018 50.000 0.00 0.00 0.00 3.69
185 186 2.587060 TGGTATGGGATGGAAGGAGT 57.413 50.000 0.00 0.00 0.00 3.85
186 187 3.717507 TGGTATGGGATGGAAGGAGTA 57.282 47.619 0.00 0.00 0.00 2.59
187 188 3.314693 TGGTATGGGATGGAAGGAGTAC 58.685 50.000 0.00 0.00 0.00 2.73
188 189 3.051341 TGGTATGGGATGGAAGGAGTACT 60.051 47.826 0.00 0.00 0.00 2.73
189 190 3.579151 GGTATGGGATGGAAGGAGTACTC 59.421 52.174 14.87 14.87 0.00 2.59
204 205 5.083533 GAGTACTCCATCCATGATCCATC 57.916 47.826 12.13 0.00 0.00 3.51
205 206 3.843027 AGTACTCCATCCATGATCCATCC 59.157 47.826 0.00 0.00 0.00 3.51
206 207 2.709966 ACTCCATCCATGATCCATCCA 58.290 47.619 0.00 0.00 0.00 3.41
207 208 3.266374 ACTCCATCCATGATCCATCCAT 58.734 45.455 0.00 0.00 0.00 3.41
208 209 4.441757 ACTCCATCCATGATCCATCCATA 58.558 43.478 0.00 0.00 0.00 2.74
209 210 5.044451 ACTCCATCCATGATCCATCCATAT 58.956 41.667 0.00 0.00 0.00 1.78
210 211 6.215031 ACTCCATCCATGATCCATCCATATA 58.785 40.000 0.00 0.00 0.00 0.86
211 212 6.855600 ACTCCATCCATGATCCATCCATATAT 59.144 38.462 0.00 0.00 0.00 0.86
212 213 8.020856 ACTCCATCCATGATCCATCCATATATA 58.979 37.037 0.00 0.00 0.00 0.86
213 214 9.059023 CTCCATCCATGATCCATCCATATATAT 57.941 37.037 0.00 0.00 0.00 0.86
225 226 9.438095 TCCATCCATATATATATAGGAGAGGGT 57.562 37.037 21.97 11.55 30.58 4.34
226 227 9.707957 CCATCCATATATATATAGGAGAGGGTC 57.292 40.741 14.52 0.00 0.00 4.46
236 237 9.845214 ATATATAGGAGAGGGTCTAATGTGTTT 57.155 33.333 0.00 0.00 0.00 2.83
237 238 6.893020 ATAGGAGAGGGTCTAATGTGTTTT 57.107 37.500 0.00 0.00 0.00 2.43
238 239 5.584551 AGGAGAGGGTCTAATGTGTTTTT 57.415 39.130 0.00 0.00 0.00 1.94
260 261 8.458573 TTTTTGAGACTGCCTTTTACTATTGA 57.541 30.769 0.00 0.00 0.00 2.57
261 262 8.635765 TTTTGAGACTGCCTTTTACTATTGAT 57.364 30.769 0.00 0.00 0.00 2.57
262 263 9.733556 TTTTGAGACTGCCTTTTACTATTGATA 57.266 29.630 0.00 0.00 0.00 2.15
263 264 9.733556 TTTGAGACTGCCTTTTACTATTGATAA 57.266 29.630 0.00 0.00 0.00 1.75
264 265 8.948631 TGAGACTGCCTTTTACTATTGATAAG 57.051 34.615 0.00 0.00 0.00 1.73
265 266 8.758829 TGAGACTGCCTTTTACTATTGATAAGA 58.241 33.333 0.00 0.00 0.00 2.10
266 267 9.771534 GAGACTGCCTTTTACTATTGATAAGAT 57.228 33.333 0.00 0.00 0.00 2.40
295 296 9.836864 ATAGTATATGAGTGTGAAAATCTTGCA 57.163 29.630 0.00 0.00 0.00 4.08
296 297 8.743085 AGTATATGAGTGTGAAAATCTTGCAT 57.257 30.769 0.00 0.00 0.00 3.96
297 298 8.618677 AGTATATGAGTGTGAAAATCTTGCATG 58.381 33.333 0.00 0.00 0.00 4.06
298 299 5.717078 ATGAGTGTGAAAATCTTGCATGT 57.283 34.783 0.00 0.00 0.00 3.21
299 300 5.112220 TGAGTGTGAAAATCTTGCATGTC 57.888 39.130 0.00 0.00 0.00 3.06
300 301 4.579753 TGAGTGTGAAAATCTTGCATGTCA 59.420 37.500 0.00 0.00 0.00 3.58
301 302 5.242171 TGAGTGTGAAAATCTTGCATGTCAT 59.758 36.000 0.00 0.00 0.00 3.06
302 303 6.430616 TGAGTGTGAAAATCTTGCATGTCATA 59.569 34.615 0.00 0.00 0.00 2.15
303 304 7.121611 TGAGTGTGAAAATCTTGCATGTCATAT 59.878 33.333 0.00 0.00 0.00 1.78
304 305 8.510243 AGTGTGAAAATCTTGCATGTCATATA 57.490 30.769 0.00 0.00 0.00 0.86
305 306 9.128404 AGTGTGAAAATCTTGCATGTCATATAT 57.872 29.630 0.00 0.00 0.00 0.86
306 307 9.740239 GTGTGAAAATCTTGCATGTCATATATT 57.260 29.630 0.00 0.00 0.00 1.28
314 315 9.682465 ATCTTGCATGTCATATATTATTGCTCT 57.318 29.630 0.00 0.00 0.00 4.09
318 319 8.872845 TGCATGTCATATATTATTGCTCTAACG 58.127 33.333 0.00 0.00 0.00 3.18
319 320 8.873830 GCATGTCATATATTATTGCTCTAACGT 58.126 33.333 0.00 0.00 0.00 3.99
321 322 9.929180 ATGTCATATATTATTGCTCTAACGTGT 57.071 29.630 0.00 0.00 0.00 4.49
322 323 9.191995 TGTCATATATTATTGCTCTAACGTGTG 57.808 33.333 0.00 0.00 0.00 3.82
323 324 8.648097 GTCATATATTATTGCTCTAACGTGTGG 58.352 37.037 0.00 0.00 0.00 4.17
324 325 8.364894 TCATATATTATTGCTCTAACGTGTGGT 58.635 33.333 0.00 0.00 0.00 4.16
325 326 6.844696 ATATTATTGCTCTAACGTGTGGTG 57.155 37.500 0.00 0.00 0.00 4.17
326 327 2.831685 ATTGCTCTAACGTGTGGTGA 57.168 45.000 0.00 0.00 0.00 4.02
327 328 2.605837 TTGCTCTAACGTGTGGTGAA 57.394 45.000 0.00 0.00 0.00 3.18
328 329 2.605837 TGCTCTAACGTGTGGTGAAA 57.394 45.000 0.00 0.00 0.00 2.69
329 330 2.479837 TGCTCTAACGTGTGGTGAAAG 58.520 47.619 0.00 0.00 0.00 2.62
330 331 2.159014 TGCTCTAACGTGTGGTGAAAGT 60.159 45.455 0.00 0.00 0.00 2.66
331 332 3.068448 TGCTCTAACGTGTGGTGAAAGTA 59.932 43.478 0.00 0.00 0.00 2.24
332 333 3.673809 GCTCTAACGTGTGGTGAAAGTAG 59.326 47.826 0.00 0.00 0.00 2.57
333 334 3.645884 TCTAACGTGTGGTGAAAGTAGC 58.354 45.455 0.00 0.00 0.00 3.58
334 335 1.589803 AACGTGTGGTGAAAGTAGCC 58.410 50.000 0.00 0.00 0.00 3.93
335 336 0.756903 ACGTGTGGTGAAAGTAGCCT 59.243 50.000 0.00 0.00 0.00 4.58
336 337 1.270147 ACGTGTGGTGAAAGTAGCCTC 60.270 52.381 0.00 0.00 0.00 4.70
337 338 1.429463 GTGTGGTGAAAGTAGCCTCG 58.571 55.000 0.00 0.00 0.00 4.63
338 339 1.000506 GTGTGGTGAAAGTAGCCTCGA 59.999 52.381 0.00 0.00 0.00 4.04
339 340 1.689813 TGTGGTGAAAGTAGCCTCGAA 59.310 47.619 0.00 0.00 0.00 3.71
340 341 2.103432 TGTGGTGAAAGTAGCCTCGAAA 59.897 45.455 0.00 0.00 0.00 3.46
341 342 3.135994 GTGGTGAAAGTAGCCTCGAAAA 58.864 45.455 0.00 0.00 0.00 2.29
342 343 3.562557 GTGGTGAAAGTAGCCTCGAAAAA 59.437 43.478 0.00 0.00 0.00 1.94
343 344 3.562557 TGGTGAAAGTAGCCTCGAAAAAC 59.437 43.478 0.00 0.00 0.00 2.43
344 345 3.562557 GGTGAAAGTAGCCTCGAAAAACA 59.437 43.478 0.00 0.00 0.00 2.83
345 346 4.524749 GTGAAAGTAGCCTCGAAAAACAC 58.475 43.478 0.00 0.00 0.00 3.32
346 347 4.034742 GTGAAAGTAGCCTCGAAAAACACA 59.965 41.667 0.00 0.00 0.00 3.72
347 348 4.819630 TGAAAGTAGCCTCGAAAAACACAT 59.180 37.500 0.00 0.00 0.00 3.21
348 349 5.298276 TGAAAGTAGCCTCGAAAAACACATT 59.702 36.000 0.00 0.00 0.00 2.71
349 350 6.483974 TGAAAGTAGCCTCGAAAAACACATTA 59.516 34.615 0.00 0.00 0.00 1.90
350 351 6.481954 AAGTAGCCTCGAAAAACACATTAG 57.518 37.500 0.00 0.00 0.00 1.73
351 352 4.935808 AGTAGCCTCGAAAAACACATTAGG 59.064 41.667 0.00 0.00 0.00 2.69
352 353 2.488153 AGCCTCGAAAAACACATTAGGC 59.512 45.455 0.00 0.00 46.67 3.93
353 354 2.415491 GCCTCGAAAAACACATTAGGCC 60.415 50.000 0.00 0.00 41.73 5.19
354 355 2.163613 CCTCGAAAAACACATTAGGCCC 59.836 50.000 0.00 0.00 0.00 5.80
355 356 3.081804 CTCGAAAAACACATTAGGCCCT 58.918 45.455 0.00 0.00 0.00 5.19
356 357 2.817258 TCGAAAAACACATTAGGCCCTG 59.183 45.455 0.00 0.00 0.00 4.45
357 358 2.556622 CGAAAAACACATTAGGCCCTGT 59.443 45.455 0.00 0.00 0.00 4.00
358 359 3.754323 CGAAAAACACATTAGGCCCTGTA 59.246 43.478 0.00 0.00 0.00 2.74
359 360 4.398044 CGAAAAACACATTAGGCCCTGTAT 59.602 41.667 0.00 0.00 0.00 2.29
360 361 5.587043 CGAAAAACACATTAGGCCCTGTATA 59.413 40.000 0.00 0.00 0.00 1.47
361 362 6.457799 CGAAAAACACATTAGGCCCTGTATAC 60.458 42.308 0.00 0.00 0.00 1.47
362 363 5.444744 AAACACATTAGGCCCTGTATACA 57.555 39.130 5.25 5.25 0.00 2.29
363 364 5.646692 AACACATTAGGCCCTGTATACAT 57.353 39.130 5.91 0.00 0.00 2.29
364 365 4.973168 ACACATTAGGCCCTGTATACATG 58.027 43.478 5.91 3.42 0.00 3.21
365 366 4.202461 ACACATTAGGCCCTGTATACATGG 60.202 45.833 19.73 19.73 35.15 3.66
366 367 4.041567 CACATTAGGCCCTGTATACATGGA 59.958 45.833 26.13 9.46 34.09 3.41
367 368 4.852118 ACATTAGGCCCTGTATACATGGAT 59.148 41.667 26.13 17.09 34.09 3.41
368 369 6.029431 ACATTAGGCCCTGTATACATGGATA 58.971 40.000 26.13 16.26 34.09 2.59
369 370 6.156949 ACATTAGGCCCTGTATACATGGATAG 59.843 42.308 26.13 13.24 34.09 2.08
370 371 4.419984 AGGCCCTGTATACATGGATAGA 57.580 45.455 26.13 0.00 34.09 1.98
371 372 4.357325 AGGCCCTGTATACATGGATAGAG 58.643 47.826 26.13 14.02 34.09 2.43
372 373 3.452627 GGCCCTGTATACATGGATAGAGG 59.547 52.174 27.45 27.45 40.81 3.69
373 374 4.353777 GCCCTGTATACATGGATAGAGGA 58.646 47.826 33.25 0.00 42.77 3.71
374 375 4.777896 GCCCTGTATACATGGATAGAGGAA 59.222 45.833 33.25 0.00 42.77 3.36
375 376 5.105146 GCCCTGTATACATGGATAGAGGAAG 60.105 48.000 33.25 21.94 42.77 3.46
376 377 6.019748 CCCTGTATACATGGATAGAGGAAGT 58.980 44.000 33.25 0.00 42.77 3.01
377 378 7.182760 CCCTGTATACATGGATAGAGGAAGTA 58.817 42.308 33.25 0.00 42.77 2.24
378 379 7.340743 CCCTGTATACATGGATAGAGGAAGTAG 59.659 44.444 33.25 17.65 42.77 2.57
379 380 7.340743 CCTGTATACATGGATAGAGGAAGTAGG 59.659 44.444 29.59 7.45 42.77 3.18
380 381 7.766628 TGTATACATGGATAGAGGAAGTAGGT 58.233 38.462 0.08 0.00 0.00 3.08
381 382 8.232412 TGTATACATGGATAGAGGAAGTAGGTT 58.768 37.037 0.08 0.00 0.00 3.50
382 383 5.878406 ACATGGATAGAGGAAGTAGGTTG 57.122 43.478 0.00 0.00 0.00 3.77
383 384 5.529289 ACATGGATAGAGGAAGTAGGTTGA 58.471 41.667 0.00 0.00 0.00 3.18
384 385 6.146760 ACATGGATAGAGGAAGTAGGTTGAT 58.853 40.000 0.00 0.00 0.00 2.57
385 386 6.617371 ACATGGATAGAGGAAGTAGGTTGATT 59.383 38.462 0.00 0.00 0.00 2.57
386 387 7.127955 ACATGGATAGAGGAAGTAGGTTGATTT 59.872 37.037 0.00 0.00 0.00 2.17
387 388 6.889198 TGGATAGAGGAAGTAGGTTGATTTG 58.111 40.000 0.00 0.00 0.00 2.32
388 389 6.126768 TGGATAGAGGAAGTAGGTTGATTTGG 60.127 42.308 0.00 0.00 0.00 3.28
389 390 4.576330 AGAGGAAGTAGGTTGATTTGGG 57.424 45.455 0.00 0.00 0.00 4.12
390 391 3.267031 AGAGGAAGTAGGTTGATTTGGGG 59.733 47.826 0.00 0.00 0.00 4.96
391 392 2.311841 AGGAAGTAGGTTGATTTGGGGG 59.688 50.000 0.00 0.00 0.00 5.40
392 393 2.310647 GGAAGTAGGTTGATTTGGGGGA 59.689 50.000 0.00 0.00 0.00 4.81
393 394 3.621558 GAAGTAGGTTGATTTGGGGGAG 58.378 50.000 0.00 0.00 0.00 4.30
394 395 1.923148 AGTAGGTTGATTTGGGGGAGG 59.077 52.381 0.00 0.00 0.00 4.30
395 396 1.920351 GTAGGTTGATTTGGGGGAGGA 59.080 52.381 0.00 0.00 0.00 3.71
396 397 1.698874 AGGTTGATTTGGGGGAGGAT 58.301 50.000 0.00 0.00 0.00 3.24
397 398 1.570979 AGGTTGATTTGGGGGAGGATC 59.429 52.381 0.00 0.00 0.00 3.36
398 399 1.287739 GGTTGATTTGGGGGAGGATCA 59.712 52.381 0.00 0.00 36.25 2.92
399 400 2.659428 GTTGATTTGGGGGAGGATCAG 58.341 52.381 0.00 0.00 36.25 2.90
400 401 1.985622 TGATTTGGGGGAGGATCAGT 58.014 50.000 0.00 0.00 36.25 3.41
401 402 1.565759 TGATTTGGGGGAGGATCAGTG 59.434 52.381 0.00 0.00 36.25 3.66
402 403 1.566231 GATTTGGGGGAGGATCAGTGT 59.434 52.381 0.00 0.00 36.25 3.55
403 404 1.455822 TTTGGGGGAGGATCAGTGTT 58.544 50.000 0.00 0.00 36.25 3.32
404 405 0.991920 TTGGGGGAGGATCAGTGTTC 59.008 55.000 0.00 0.00 36.25 3.18
405 406 0.119155 TGGGGGAGGATCAGTGTTCT 59.881 55.000 0.00 0.00 36.25 3.01
406 407 0.543749 GGGGGAGGATCAGTGTTCTG 59.456 60.000 0.00 0.00 42.54 3.02
407 408 0.543749 GGGGAGGATCAGTGTTCTGG 59.456 60.000 0.00 0.00 41.59 3.86
408 409 1.573108 GGGAGGATCAGTGTTCTGGA 58.427 55.000 0.00 0.00 41.59 3.86
409 410 1.909302 GGGAGGATCAGTGTTCTGGAA 59.091 52.381 0.00 0.00 41.59 3.53
410 411 2.305927 GGGAGGATCAGTGTTCTGGAAA 59.694 50.000 0.00 0.00 41.59 3.13
411 412 3.054065 GGGAGGATCAGTGTTCTGGAAAT 60.054 47.826 0.00 0.00 41.59 2.17
412 413 4.195416 GGAGGATCAGTGTTCTGGAAATC 58.805 47.826 0.00 0.00 41.59 2.17
413 414 4.195416 GAGGATCAGTGTTCTGGAAATCC 58.805 47.826 0.00 0.00 40.20 3.01
414 415 3.588842 AGGATCAGTGTTCTGGAAATCCA 59.411 43.478 1.53 1.53 41.30 3.41
415 416 4.229123 AGGATCAGTGTTCTGGAAATCCAT 59.771 41.667 1.93 0.00 46.46 3.41
416 417 4.578105 GGATCAGTGTTCTGGAAATCCATC 59.422 45.833 1.93 0.00 46.46 3.51
417 418 3.955471 TCAGTGTTCTGGAAATCCATCC 58.045 45.455 1.93 0.00 46.46 3.51
418 419 3.330405 TCAGTGTTCTGGAAATCCATCCA 59.670 43.478 1.93 0.00 46.46 3.41
423 424 3.419793 TGGAAATCCATCCATCGGC 57.580 52.632 0.00 0.00 44.52 5.54
424 425 0.178992 TGGAAATCCATCCATCGGCC 60.179 55.000 0.00 0.00 44.52 6.13
425 426 0.178992 GGAAATCCATCCATCGGCCA 60.179 55.000 2.24 0.00 39.42 5.36
426 427 1.242076 GAAATCCATCCATCGGCCAG 58.758 55.000 2.24 0.00 0.00 4.85
427 428 0.846015 AAATCCATCCATCGGCCAGA 59.154 50.000 2.24 0.78 0.00 3.86
428 429 0.109342 AATCCATCCATCGGCCAGAC 59.891 55.000 2.24 0.00 0.00 3.51
429 430 2.104572 ATCCATCCATCGGCCAGACG 62.105 60.000 2.24 0.00 0.00 4.18
430 431 2.969238 CATCCATCGGCCAGACGC 60.969 66.667 2.24 0.00 0.00 5.19
448 449 4.711949 CCGGCCAGCAAGCAGTCT 62.712 66.667 2.24 0.00 0.00 3.24
449 450 3.429141 CGGCCAGCAAGCAGTCTG 61.429 66.667 2.24 0.00 0.00 3.51
450 451 2.033141 GGCCAGCAAGCAGTCTGA 59.967 61.111 3.32 0.00 32.26 3.27
451 452 1.601759 GGCCAGCAAGCAGTCTGAA 60.602 57.895 3.32 0.00 32.26 3.02
452 453 1.174712 GGCCAGCAAGCAGTCTGAAA 61.175 55.000 3.32 0.00 32.26 2.69
453 454 0.039708 GCCAGCAAGCAGTCTGAAAC 60.040 55.000 3.32 0.00 32.26 2.78
454 455 1.602311 CCAGCAAGCAGTCTGAAACT 58.398 50.000 3.32 0.00 39.44 2.66
455 456 1.952296 CCAGCAAGCAGTCTGAAACTT 59.048 47.619 3.32 0.00 35.45 2.66
456 457 2.360165 CCAGCAAGCAGTCTGAAACTTT 59.640 45.455 3.32 0.00 35.45 2.66
457 458 3.549625 CCAGCAAGCAGTCTGAAACTTTC 60.550 47.826 3.32 0.00 35.45 2.62
458 459 3.314635 CAGCAAGCAGTCTGAAACTTTCT 59.685 43.478 3.32 0.00 35.45 2.52
459 460 3.950395 AGCAAGCAGTCTGAAACTTTCTT 59.050 39.130 3.32 0.00 35.45 2.52
460 461 4.400567 AGCAAGCAGTCTGAAACTTTCTTT 59.599 37.500 3.32 0.00 35.45 2.52
461 462 4.737279 GCAAGCAGTCTGAAACTTTCTTTC 59.263 41.667 3.32 0.00 35.45 2.62
462 463 5.277047 CAAGCAGTCTGAAACTTTCTTTCC 58.723 41.667 3.32 0.00 35.45 3.13
463 464 4.786425 AGCAGTCTGAAACTTTCTTTCCT 58.214 39.130 3.32 0.00 35.45 3.36
464 465 5.196695 AGCAGTCTGAAACTTTCTTTCCTT 58.803 37.500 3.32 0.00 35.45 3.36
465 466 5.298026 AGCAGTCTGAAACTTTCTTTCCTTC 59.702 40.000 3.32 0.00 35.45 3.46
466 467 5.742446 CAGTCTGAAACTTTCTTTCCTTCG 58.258 41.667 0.00 0.00 35.45 3.79
467 468 4.816925 AGTCTGAAACTTTCTTTCCTTCGG 59.183 41.667 3.22 0.00 33.03 4.30
468 469 4.814771 GTCTGAAACTTTCTTTCCTTCGGA 59.185 41.667 3.22 0.00 0.00 4.55
469 470 4.814771 TCTGAAACTTTCTTTCCTTCGGAC 59.185 41.667 3.22 0.00 0.00 4.79
470 471 4.519213 TGAAACTTTCTTTCCTTCGGACA 58.481 39.130 3.22 0.00 0.00 4.02
471 472 4.574828 TGAAACTTTCTTTCCTTCGGACAG 59.425 41.667 3.22 0.00 31.33 3.51
472 473 2.495084 ACTTTCTTTCCTTCGGACAGC 58.505 47.619 0.00 0.00 30.28 4.40
473 474 1.807142 CTTTCTTTCCTTCGGACAGCC 59.193 52.381 0.00 0.00 30.28 4.85
474 475 1.056660 TTCTTTCCTTCGGACAGCCT 58.943 50.000 0.00 0.00 30.28 4.58
475 476 0.321671 TCTTTCCTTCGGACAGCCTG 59.678 55.000 0.00 0.00 30.28 4.85
476 477 1.301677 CTTTCCTTCGGACAGCCTGC 61.302 60.000 0.00 0.00 0.00 4.85
477 478 2.050836 TTTCCTTCGGACAGCCTGCA 62.051 55.000 0.00 0.00 0.00 4.41
478 479 2.731691 TTCCTTCGGACAGCCTGCAC 62.732 60.000 0.00 0.00 0.00 4.57
479 480 2.345244 CTTCGGACAGCCTGCACT 59.655 61.111 0.00 0.00 0.00 4.40
480 481 1.739562 CTTCGGACAGCCTGCACTC 60.740 63.158 0.00 0.00 0.00 3.51
481 482 2.164865 CTTCGGACAGCCTGCACTCT 62.165 60.000 0.00 0.00 0.00 3.24
482 483 2.433838 CGGACAGCCTGCACTCTG 60.434 66.667 8.48 8.48 36.45 3.35
483 484 2.935740 CGGACAGCCTGCACTCTGA 61.936 63.158 15.20 0.00 34.57 3.27
484 485 1.372683 GGACAGCCTGCACTCTGAA 59.627 57.895 15.20 0.00 34.57 3.02
485 486 0.250467 GGACAGCCTGCACTCTGAAA 60.250 55.000 15.20 0.00 34.57 2.69
486 487 0.871057 GACAGCCTGCACTCTGAAAC 59.129 55.000 15.20 5.05 34.57 2.78
487 488 0.471617 ACAGCCTGCACTCTGAAACT 59.528 50.000 15.20 0.00 34.57 2.66
488 489 1.133976 ACAGCCTGCACTCTGAAACTT 60.134 47.619 15.20 0.00 34.57 2.66
489 490 1.266175 CAGCCTGCACTCTGAAACTTG 59.734 52.381 4.82 0.00 32.26 3.16
490 491 0.595095 GCCTGCACTCTGAAACTTGG 59.405 55.000 0.00 0.00 0.00 3.61
491 492 0.595095 CCTGCACTCTGAAACTTGGC 59.405 55.000 0.00 0.00 0.00 4.52
492 493 1.602311 CTGCACTCTGAAACTTGGCT 58.398 50.000 0.00 0.00 0.00 4.75
493 494 1.534595 CTGCACTCTGAAACTTGGCTC 59.465 52.381 0.00 0.00 0.00 4.70
494 495 1.141657 TGCACTCTGAAACTTGGCTCT 59.858 47.619 0.00 0.00 0.00 4.09
495 496 1.534595 GCACTCTGAAACTTGGCTCTG 59.465 52.381 0.00 0.00 0.00 3.35
496 497 2.149578 CACTCTGAAACTTGGCTCTGG 58.850 52.381 0.00 0.00 0.00 3.86
497 498 1.072965 ACTCTGAAACTTGGCTCTGGG 59.927 52.381 0.00 0.00 0.00 4.45
498 499 1.349026 CTCTGAAACTTGGCTCTGGGA 59.651 52.381 0.00 0.00 0.00 4.37
499 500 1.774254 TCTGAAACTTGGCTCTGGGAA 59.226 47.619 0.00 0.00 0.00 3.97
500 501 2.376518 TCTGAAACTTGGCTCTGGGAAT 59.623 45.455 0.00 0.00 0.00 3.01
501 502 2.490903 CTGAAACTTGGCTCTGGGAATG 59.509 50.000 0.00 0.00 0.00 2.67
502 503 1.821136 GAAACTTGGCTCTGGGAATGG 59.179 52.381 0.00 0.00 0.00 3.16
503 504 0.779997 AACTTGGCTCTGGGAATGGT 59.220 50.000 0.00 0.00 0.00 3.55
504 505 0.038744 ACTTGGCTCTGGGAATGGTG 59.961 55.000 0.00 0.00 0.00 4.17
505 506 1.304381 TTGGCTCTGGGAATGGTGC 60.304 57.895 0.00 0.00 0.00 5.01
506 507 2.825836 GGCTCTGGGAATGGTGCG 60.826 66.667 0.00 0.00 0.00 5.34
507 508 3.512516 GCTCTGGGAATGGTGCGC 61.513 66.667 0.00 0.00 0.00 6.09
508 509 3.197790 CTCTGGGAATGGTGCGCG 61.198 66.667 0.00 0.00 0.00 6.86
524 525 2.935955 CGCGTCGCTGAAAACCTT 59.064 55.556 16.36 0.00 0.00 3.50
525 526 1.438710 CGCGTCGCTGAAAACCTTG 60.439 57.895 16.36 0.00 0.00 3.61
526 527 1.082104 GCGTCGCTGAAAACCTTGG 60.082 57.895 10.68 0.00 0.00 3.61
527 528 1.574428 CGTCGCTGAAAACCTTGGG 59.426 57.895 0.00 0.00 0.00 4.12
528 529 0.882927 CGTCGCTGAAAACCTTGGGA 60.883 55.000 0.00 0.00 0.00 4.37
529 530 1.534729 GTCGCTGAAAACCTTGGGAT 58.465 50.000 0.00 0.00 0.00 3.85
530 531 1.886542 GTCGCTGAAAACCTTGGGATT 59.113 47.619 0.00 0.00 0.00 3.01
557 558 3.719144 CGAACGAACCGGCCCAAC 61.719 66.667 0.00 0.00 0.00 3.77
558 559 2.281276 GAACGAACCGGCCCAACT 60.281 61.111 0.00 0.00 0.00 3.16
559 560 2.593436 AACGAACCGGCCCAACTG 60.593 61.111 0.00 0.00 0.00 3.16
562 563 3.670377 GAACCGGCCCAACTGCAC 61.670 66.667 0.00 0.00 0.00 4.57
619 620 4.659172 CCGAGCCAGCCAACCCAA 62.659 66.667 0.00 0.00 0.00 4.12
621 622 3.365265 GAGCCAGCCAACCCAACG 61.365 66.667 0.00 0.00 0.00 4.10
676 685 4.368543 GGAACCGAACCGCTCCGT 62.369 66.667 0.00 0.00 0.00 4.69
678 687 2.356673 AACCGAACCGCTCCGTTC 60.357 61.111 0.00 0.00 39.03 3.95
679 688 3.154584 AACCGAACCGCTCCGTTCA 62.155 57.895 8.36 0.00 41.89 3.18
680 689 2.356553 CCGAACCGCTCCGTTCAA 60.357 61.111 8.36 0.00 41.89 2.69
681 690 1.740296 CCGAACCGCTCCGTTCAAT 60.740 57.895 8.36 0.00 41.89 2.57
682 691 1.693083 CCGAACCGCTCCGTTCAATC 61.693 60.000 8.36 0.00 41.89 2.67
683 692 0.736325 CGAACCGCTCCGTTCAATCT 60.736 55.000 8.36 0.00 41.89 2.40
684 693 1.000145 GAACCGCTCCGTTCAATCTC 59.000 55.000 3.99 0.00 41.51 2.75
685 694 0.608640 AACCGCTCCGTTCAATCTCT 59.391 50.000 0.00 0.00 0.00 3.10
686 695 0.608640 ACCGCTCCGTTCAATCTCTT 59.391 50.000 0.00 0.00 0.00 2.85
687 696 1.281899 CCGCTCCGTTCAATCTCTTC 58.718 55.000 0.00 0.00 0.00 2.87
689 698 1.281899 GCTCCGTTCAATCTCTTCCG 58.718 55.000 0.00 0.00 0.00 4.30
804 813 1.553690 ATTCCCCGACAGACCACAGG 61.554 60.000 0.00 0.00 0.00 4.00
805 814 2.603473 CCCCGACAGACCACAGGA 60.603 66.667 0.00 0.00 0.00 3.86
832 847 0.109913 AACCCGGTGAGTTTTCTCCC 59.890 55.000 0.00 0.00 45.63 4.30
847 862 0.341609 CTCCCCTCTTCTTCTCCCCT 59.658 60.000 0.00 0.00 0.00 4.79
852 867 0.043334 CTCTTCTTCTCCCCTCCCCA 59.957 60.000 0.00 0.00 0.00 4.96
854 869 0.985490 CTTCTTCTCCCCTCCCCAGG 60.985 65.000 0.00 0.00 39.98 4.45
875 892 1.684049 CAGGCTCGTCCTCTCCCTT 60.684 63.158 0.00 0.00 45.52 3.95
928 945 1.975680 TGGTCGGGGATTATTAGCTCC 59.024 52.381 0.00 0.00 0.00 4.70
943 960 0.460722 GCTCCTCCGGAACCTAGTTC 59.539 60.000 5.23 0.00 41.32 3.01
1032 1049 4.711949 CCGGAGGCTGTTGCTGCT 62.712 66.667 0.00 0.00 46.14 4.24
1094 1111 3.519930 GGAGGAGGACGACGAGGC 61.520 72.222 0.00 0.00 0.00 4.70
1603 1635 2.039084 GCCACCAAGAGAAGGAAGAAGA 59.961 50.000 0.00 0.00 0.00 2.87
1781 1813 4.704833 GGCTGCTGGCTCGGACAA 62.705 66.667 10.05 0.00 41.46 3.18
1818 1850 0.036671 CGGTTGGGAGGTTCCTGTAC 60.037 60.000 0.00 0.00 36.57 2.90
1929 1961 1.830279 TCTCGTACCATGACTTCCGT 58.170 50.000 0.00 0.00 0.00 4.69
2032 2064 0.756294 TGTGTTGTCCGATGAGTGGT 59.244 50.000 0.00 0.00 0.00 4.16
2373 2405 2.096496 CGCAAAGACCATCACTGGATTC 59.904 50.000 0.00 0.00 46.37 2.52
2548 2580 1.064003 TGAATGGGTACACTGCCTGT 58.936 50.000 0.00 0.00 36.82 4.00
2562 2594 1.075374 TGCCTGTTGCCAAAGATACCT 59.925 47.619 0.00 0.00 40.16 3.08
2597 2629 8.526147 AGAAGTGAGCAATATTGTTAGCAATTT 58.474 29.630 16.61 0.00 42.19 1.82
2658 2690 2.158449 CGAACCACTTGTGCATCTTCTC 59.842 50.000 0.00 0.00 0.00 2.87
2721 2753 6.724263 TGTTTATGCTGGATTATACAAAGCG 58.276 36.000 0.00 0.00 36.66 4.68
2766 2798 5.737635 GCTGGTGAAGAAGAGCGACTATATT 60.738 44.000 0.00 0.00 0.00 1.28
2911 2943 6.605471 TTTTCTCAGGAATGCTAGACTGTA 57.395 37.500 0.00 0.00 32.92 2.74
2928 2960 3.197983 ACTGTATAGAAAGGCTGGTGTCC 59.802 47.826 0.00 0.00 0.00 4.02
3055 3090 9.364653 CTTTACCTCCTGGTTAGTACTATACAT 57.635 37.037 2.79 0.00 46.05 2.29
3564 3602 3.134574 ACAACAATACAAGGCGAAGGA 57.865 42.857 0.00 0.00 0.00 3.36
3679 3717 3.133003 ACTGGATGGAGATTAGTCAACCG 59.867 47.826 0.00 0.00 0.00 4.44
3709 3747 3.402681 CCATCAGCAGGACCGGGT 61.403 66.667 6.32 0.00 0.00 5.28
3727 3765 3.610911 GGGTGATGAATTCGAGTCCTTT 58.389 45.455 0.04 0.00 0.00 3.11
3728 3766 3.375299 GGGTGATGAATTCGAGTCCTTTG 59.625 47.826 0.04 0.00 0.00 2.77
3785 3824 3.004862 CGTGGGTAATGTTGAGGGTTAC 58.995 50.000 0.00 0.00 0.00 2.50
3852 3892 1.306997 TTCCCGAGGAATCCAGGCT 60.307 57.895 0.61 0.00 36.71 4.58
3860 3900 1.202903 AGGAATCCAGGCTGATGATGC 60.203 52.381 17.94 9.58 0.00 3.91
3896 3936 4.344104 TCCAATGATGAAGAGAAAACCCC 58.656 43.478 0.00 0.00 0.00 4.95
3898 3938 4.009675 CAATGATGAAGAGAAAACCCCGA 58.990 43.478 0.00 0.00 0.00 5.14
3911 3951 2.357034 CCCGACTGTGGGTGAACG 60.357 66.667 8.09 0.00 44.76 3.95
3938 3978 3.628032 GGCTCTAACTTGGATAAACCTGC 59.372 47.826 0.00 0.00 39.86 4.85
3969 4009 3.129462 GGAAGTAGAAGGGAATTGCTTGC 59.871 47.826 0.00 0.00 0.00 4.01
4040 4080 6.746120 TCGAGTAGCAAAAAGGATATAGGTC 58.254 40.000 0.00 0.00 0.00 3.85
4054 4094 7.731054 AGGATATAGGTCTTTCTTGTGTGATC 58.269 38.462 0.00 0.00 0.00 2.92
4098 4138 5.807011 CGATGCTTGTGATATATTCGATGGA 59.193 40.000 0.00 0.00 0.00 3.41
4144 4211 3.909995 AGCATACAAGGGATATAGGTGCA 59.090 43.478 0.00 0.00 32.82 4.57
4198 4265 5.635280 TCTTTCAGTGCTTGAGATAGTTTCG 59.365 40.000 0.00 0.00 37.07 3.46
4199 4266 4.521130 TCAGTGCTTGAGATAGTTTCGT 57.479 40.909 0.00 0.00 0.00 3.85
4200 4267 4.237724 TCAGTGCTTGAGATAGTTTCGTG 58.762 43.478 0.00 0.00 0.00 4.35
4201 4268 3.990469 CAGTGCTTGAGATAGTTTCGTGT 59.010 43.478 0.00 0.00 0.00 4.49
4202 4269 5.048294 TCAGTGCTTGAGATAGTTTCGTGTA 60.048 40.000 0.00 0.00 0.00 2.90
4203 4270 5.807520 CAGTGCTTGAGATAGTTTCGTGTAT 59.192 40.000 0.00 0.00 0.00 2.29
4204 4271 6.311445 CAGTGCTTGAGATAGTTTCGTGTATT 59.689 38.462 0.00 0.00 0.00 1.89
4205 4272 6.874134 AGTGCTTGAGATAGTTTCGTGTATTT 59.126 34.615 0.00 0.00 0.00 1.40
4206 4273 7.063544 AGTGCTTGAGATAGTTTCGTGTATTTC 59.936 37.037 0.00 0.00 0.00 2.17
4207 4274 7.063544 GTGCTTGAGATAGTTTCGTGTATTTCT 59.936 37.037 0.00 0.00 0.00 2.52
4208 4275 7.275779 TGCTTGAGATAGTTTCGTGTATTTCTC 59.724 37.037 0.00 0.00 0.00 2.87
4237 4304 8.874816 GTCTTTGTGATTGAGGTATTTAGAGAC 58.125 37.037 0.00 0.00 0.00 3.36
4305 4372 4.283212 ACCAGAGCTTCTCCTAATATGCTC 59.717 45.833 0.00 0.00 44.85 4.26
4329 4396 3.905784 AGTATGCAGCAGCTTTGTTTTC 58.094 40.909 0.00 0.00 42.74 2.29
4352 4419 8.641499 TTCGTTTTGTTTTATCTTTTCTGCAT 57.359 26.923 0.00 0.00 0.00 3.96
4366 4433 7.884257 TCTTTTCTGCATGACATAATCAACAA 58.116 30.769 0.00 0.00 41.93 2.83
4367 4434 8.525316 TCTTTTCTGCATGACATAATCAACAAT 58.475 29.630 0.00 0.00 41.93 2.71
4368 4435 8.692110 TTTTCTGCATGACATAATCAACAATC 57.308 30.769 0.00 0.00 41.93 2.67
4369 4436 7.393841 TTCTGCATGACATAATCAACAATCA 57.606 32.000 0.00 0.00 41.93 2.57
4370 4437 7.023197 TCTGCATGACATAATCAACAATCAG 57.977 36.000 0.00 0.00 41.93 2.90
4413 4486 5.104360 CCTCCCATTATCAACAGAAGAAGGA 60.104 44.000 0.00 0.00 0.00 3.36
4418 4491 7.148171 CCCATTATCAACAGAAGAAGGAAGTTC 60.148 40.741 0.00 0.00 35.08 3.01
4448 4521 8.837099 AGTAGCTGAGGATATTATAGCAGAAT 57.163 34.615 0.00 0.00 36.87 2.40
4473 4546 4.353777 AGAACACTAATCTGGAGCCAGTA 58.646 43.478 15.67 4.11 43.96 2.74
4489 4562 7.498900 TGGAGCCAGTATTCAAATATGTTGTAG 59.501 37.037 0.00 0.00 0.00 2.74
4691 4764 2.355108 CCGAAAGAAGCCAGATGAGGAA 60.355 50.000 0.00 0.00 0.00 3.36
4717 4790 1.002502 GGGGAAAACGCTACCAGCT 60.003 57.895 0.00 0.00 39.60 4.24
4720 4793 0.321298 GGAAAACGCTACCAGCTCCA 60.321 55.000 0.00 0.00 39.60 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.555168 CGGGATATCAGCTACTTTCACCC 60.555 52.174 4.83 0.00 0.00 4.61
1 2 3.555168 CCGGGATATCAGCTACTTTCACC 60.555 52.174 4.83 0.00 0.00 4.02
2 3 3.069729 ACCGGGATATCAGCTACTTTCAC 59.930 47.826 6.32 0.00 0.00 3.18
4 5 3.321111 TGACCGGGATATCAGCTACTTTC 59.679 47.826 6.32 0.00 0.00 2.62
5 6 3.305720 TGACCGGGATATCAGCTACTTT 58.694 45.455 6.32 0.00 0.00 2.66
6 7 2.958818 TGACCGGGATATCAGCTACTT 58.041 47.619 6.32 0.00 0.00 2.24
7 8 2.677542 TGACCGGGATATCAGCTACT 57.322 50.000 6.32 0.00 0.00 2.57
8 9 5.599999 AATATGACCGGGATATCAGCTAC 57.400 43.478 6.32 0.00 0.00 3.58
9 10 5.483937 ACAAATATGACCGGGATATCAGCTA 59.516 40.000 6.32 0.00 0.00 3.32
10 11 4.287067 ACAAATATGACCGGGATATCAGCT 59.713 41.667 6.32 0.00 0.00 4.24
11 12 4.579869 ACAAATATGACCGGGATATCAGC 58.420 43.478 6.32 0.00 0.00 4.26
12 13 5.997746 ACAACAAATATGACCGGGATATCAG 59.002 40.000 6.32 6.19 0.00 2.90
13 14 5.935945 ACAACAAATATGACCGGGATATCA 58.064 37.500 6.32 0.00 0.00 2.15
14 15 6.072673 GGAACAACAAATATGACCGGGATATC 60.073 42.308 6.32 0.00 0.00 1.63
15 16 5.768164 GGAACAACAAATATGACCGGGATAT 59.232 40.000 6.32 4.28 0.00 1.63
16 17 5.104277 AGGAACAACAAATATGACCGGGATA 60.104 40.000 6.32 1.58 0.00 2.59
17 18 3.951680 GGAACAACAAATATGACCGGGAT 59.048 43.478 6.32 0.00 0.00 3.85
18 19 3.009695 AGGAACAACAAATATGACCGGGA 59.990 43.478 6.32 0.00 0.00 5.14
19 20 3.128589 CAGGAACAACAAATATGACCGGG 59.871 47.826 6.32 0.00 0.00 5.73
20 21 3.427503 GCAGGAACAACAAATATGACCGG 60.428 47.826 0.00 0.00 0.00 5.28
21 22 3.440173 AGCAGGAACAACAAATATGACCG 59.560 43.478 0.00 0.00 0.00 4.79
22 23 5.391312 AAGCAGGAACAACAAATATGACC 57.609 39.130 0.00 0.00 0.00 4.02
23 24 5.863935 GGAAAGCAGGAACAACAAATATGAC 59.136 40.000 0.00 0.00 0.00 3.06
24 25 5.774690 AGGAAAGCAGGAACAACAAATATGA 59.225 36.000 0.00 0.00 0.00 2.15
25 26 6.029346 AGGAAAGCAGGAACAACAAATATG 57.971 37.500 0.00 0.00 0.00 1.78
26 27 6.494835 AGAAGGAAAGCAGGAACAACAAATAT 59.505 34.615 0.00 0.00 0.00 1.28
27 28 5.833131 AGAAGGAAAGCAGGAACAACAAATA 59.167 36.000 0.00 0.00 0.00 1.40
28 29 4.651045 AGAAGGAAAGCAGGAACAACAAAT 59.349 37.500 0.00 0.00 0.00 2.32
29 30 4.023291 AGAAGGAAAGCAGGAACAACAAA 58.977 39.130 0.00 0.00 0.00 2.83
30 31 3.631250 AGAAGGAAAGCAGGAACAACAA 58.369 40.909 0.00 0.00 0.00 2.83
31 32 3.297134 AGAAGGAAAGCAGGAACAACA 57.703 42.857 0.00 0.00 0.00 3.33
32 33 3.004839 GGAAGAAGGAAAGCAGGAACAAC 59.995 47.826 0.00 0.00 0.00 3.32
33 34 3.117512 AGGAAGAAGGAAAGCAGGAACAA 60.118 43.478 0.00 0.00 0.00 2.83
34 35 2.443255 AGGAAGAAGGAAAGCAGGAACA 59.557 45.455 0.00 0.00 0.00 3.18
35 36 3.147553 AGGAAGAAGGAAAGCAGGAAC 57.852 47.619 0.00 0.00 0.00 3.62
36 37 3.884037 AAGGAAGAAGGAAAGCAGGAA 57.116 42.857 0.00 0.00 0.00 3.36
37 38 3.138283 TGAAAGGAAGAAGGAAAGCAGGA 59.862 43.478 0.00 0.00 0.00 3.86
38 39 3.490348 TGAAAGGAAGAAGGAAAGCAGG 58.510 45.455 0.00 0.00 0.00 4.85
39 40 4.082354 CCATGAAAGGAAGAAGGAAAGCAG 60.082 45.833 0.00 0.00 0.00 4.24
40 41 3.828451 CCATGAAAGGAAGAAGGAAAGCA 59.172 43.478 0.00 0.00 0.00 3.91
41 42 3.829026 ACCATGAAAGGAAGAAGGAAAGC 59.171 43.478 0.00 0.00 0.00 3.51
42 43 7.709149 AATACCATGAAAGGAAGAAGGAAAG 57.291 36.000 0.00 0.00 0.00 2.62
43 44 8.367156 CAAAATACCATGAAAGGAAGAAGGAAA 58.633 33.333 0.00 0.00 0.00 3.13
44 45 7.508977 ACAAAATACCATGAAAGGAAGAAGGAA 59.491 33.333 0.00 0.00 0.00 3.36
45 46 7.010160 ACAAAATACCATGAAAGGAAGAAGGA 58.990 34.615 0.00 0.00 0.00 3.36
46 47 7.092716 CACAAAATACCATGAAAGGAAGAAGG 58.907 38.462 0.00 0.00 0.00 3.46
47 48 7.661040 ACACAAAATACCATGAAAGGAAGAAG 58.339 34.615 0.00 0.00 0.00 2.85
48 49 7.255801 GGACACAAAATACCATGAAAGGAAGAA 60.256 37.037 0.00 0.00 0.00 2.52
49 50 6.208599 GGACACAAAATACCATGAAAGGAAGA 59.791 38.462 0.00 0.00 0.00 2.87
50 51 6.389906 GGACACAAAATACCATGAAAGGAAG 58.610 40.000 0.00 0.00 0.00 3.46
51 52 5.245075 GGGACACAAAATACCATGAAAGGAA 59.755 40.000 0.00 0.00 0.00 3.36
52 53 4.770010 GGGACACAAAATACCATGAAAGGA 59.230 41.667 0.00 0.00 0.00 3.36
53 54 4.526262 TGGGACACAAAATACCATGAAAGG 59.474 41.667 0.00 0.00 0.00 3.11
54 55 5.720371 TGGGACACAAAATACCATGAAAG 57.280 39.130 0.00 0.00 0.00 2.62
55 56 5.600484 ACTTGGGACACAAAATACCATGAAA 59.400 36.000 0.00 0.00 39.29 2.69
56 57 5.144100 ACTTGGGACACAAAATACCATGAA 58.856 37.500 0.00 0.00 39.29 2.57
57 58 4.735369 ACTTGGGACACAAAATACCATGA 58.265 39.130 0.00 0.00 39.29 3.07
58 59 5.475220 TGTACTTGGGACACAAAATACCATG 59.525 40.000 8.38 0.00 39.29 3.66
59 60 5.475564 GTGTACTTGGGACACAAAATACCAT 59.524 40.000 8.02 0.00 45.36 3.55
60 61 4.822896 GTGTACTTGGGACACAAAATACCA 59.177 41.667 8.02 0.00 45.36 3.25
61 62 5.366829 GTGTACTTGGGACACAAAATACC 57.633 43.478 8.02 0.00 45.36 2.73
69 70 1.797025 GAGCTGTGTACTTGGGACAC 58.203 55.000 6.12 6.12 46.07 3.67
70 71 0.317160 CGAGCTGTGTACTTGGGACA 59.683 55.000 0.00 0.00 0.00 4.02
71 72 0.601558 TCGAGCTGTGTACTTGGGAC 59.398 55.000 0.00 0.00 0.00 4.46
72 73 1.557099 ATCGAGCTGTGTACTTGGGA 58.443 50.000 0.00 0.00 0.00 4.37
73 74 2.271800 GAATCGAGCTGTGTACTTGGG 58.728 52.381 0.00 0.00 0.00 4.12
74 75 1.920574 CGAATCGAGCTGTGTACTTGG 59.079 52.381 0.00 0.00 0.00 3.61
75 76 2.594654 GTCGAATCGAGCTGTGTACTTG 59.405 50.000 5.25 0.00 36.23 3.16
76 77 2.728225 CGTCGAATCGAGCTGTGTACTT 60.728 50.000 5.25 0.00 36.23 2.24
77 78 1.202043 CGTCGAATCGAGCTGTGTACT 60.202 52.381 5.25 0.00 36.23 2.73
78 79 1.181001 CGTCGAATCGAGCTGTGTAC 58.819 55.000 5.25 0.00 36.23 2.90
79 80 0.098200 CCGTCGAATCGAGCTGTGTA 59.902 55.000 5.25 0.00 36.23 2.90
80 81 1.154016 CCGTCGAATCGAGCTGTGT 60.154 57.895 5.25 0.00 36.23 3.72
81 82 1.874019 CCCGTCGAATCGAGCTGTG 60.874 63.158 5.25 0.00 36.23 3.66
82 83 1.384989 ATCCCGTCGAATCGAGCTGT 61.385 55.000 5.25 0.00 36.23 4.40
83 84 0.936764 CATCCCGTCGAATCGAGCTG 60.937 60.000 5.25 0.00 36.23 4.24
84 85 1.101635 TCATCCCGTCGAATCGAGCT 61.102 55.000 5.25 0.00 36.23 4.09
85 86 0.039074 ATCATCCCGTCGAATCGAGC 60.039 55.000 5.25 0.20 36.23 5.03
86 87 1.667177 CCATCATCCCGTCGAATCGAG 60.667 57.143 5.25 0.16 36.23 4.04
87 88 0.313987 CCATCATCCCGTCGAATCGA 59.686 55.000 0.00 0.00 0.00 3.59
88 89 0.313987 TCCATCATCCCGTCGAATCG 59.686 55.000 0.00 0.00 0.00 3.34
89 90 1.337260 CCTCCATCATCCCGTCGAATC 60.337 57.143 0.00 0.00 0.00 2.52
90 91 0.681733 CCTCCATCATCCCGTCGAAT 59.318 55.000 0.00 0.00 0.00 3.34
91 92 1.399744 CCCTCCATCATCCCGTCGAA 61.400 60.000 0.00 0.00 0.00 3.71
92 93 1.832608 CCCTCCATCATCCCGTCGA 60.833 63.158 0.00 0.00 0.00 4.20
93 94 1.832608 TCCCTCCATCATCCCGTCG 60.833 63.158 0.00 0.00 0.00 5.12
94 95 1.048724 TGTCCCTCCATCATCCCGTC 61.049 60.000 0.00 0.00 0.00 4.79
95 96 1.002921 TGTCCCTCCATCATCCCGT 59.997 57.895 0.00 0.00 0.00 5.28
96 97 1.050988 AGTGTCCCTCCATCATCCCG 61.051 60.000 0.00 0.00 0.00 5.14
97 98 0.761802 GAGTGTCCCTCCATCATCCC 59.238 60.000 0.00 0.00 33.79 3.85
98 99 0.390860 CGAGTGTCCCTCCATCATCC 59.609 60.000 0.00 0.00 36.82 3.51
99 100 0.390860 CCGAGTGTCCCTCCATCATC 59.609 60.000 0.00 0.00 36.82 2.92
100 101 0.032117 TCCGAGTGTCCCTCCATCAT 60.032 55.000 0.00 0.00 36.82 2.45
101 102 0.252057 TTCCGAGTGTCCCTCCATCA 60.252 55.000 0.00 0.00 36.82 3.07
102 103 0.902531 TTTCCGAGTGTCCCTCCATC 59.097 55.000 0.00 0.00 36.82 3.51
103 104 1.486726 GATTTCCGAGTGTCCCTCCAT 59.513 52.381 0.00 0.00 36.82 3.41
104 105 0.902531 GATTTCCGAGTGTCCCTCCA 59.097 55.000 0.00 0.00 36.82 3.86
105 106 0.902531 TGATTTCCGAGTGTCCCTCC 59.097 55.000 0.00 0.00 36.82 4.30
106 107 2.168521 TCATGATTTCCGAGTGTCCCTC 59.831 50.000 0.00 0.00 36.80 4.30
107 108 2.187958 TCATGATTTCCGAGTGTCCCT 58.812 47.619 0.00 0.00 0.00 4.20
108 109 2.678336 GTTCATGATTTCCGAGTGTCCC 59.322 50.000 0.00 0.00 0.00 4.46
109 110 2.348666 CGTTCATGATTTCCGAGTGTCC 59.651 50.000 0.00 0.00 0.00 4.02
110 111 2.993899 ACGTTCATGATTTCCGAGTGTC 59.006 45.455 0.00 0.00 0.00 3.67
111 112 2.993899 GACGTTCATGATTTCCGAGTGT 59.006 45.455 0.00 0.00 0.00 3.55
112 113 3.254060 AGACGTTCATGATTTCCGAGTG 58.746 45.455 0.00 0.00 0.00 3.51
113 114 3.594603 AGACGTTCATGATTTCCGAGT 57.405 42.857 0.00 0.00 0.00 4.18
114 115 4.421058 TGTAGACGTTCATGATTTCCGAG 58.579 43.478 0.00 0.00 0.00 4.63
115 116 4.443913 TGTAGACGTTCATGATTTCCGA 57.556 40.909 0.00 0.00 0.00 4.55
116 117 5.107837 GCTATGTAGACGTTCATGATTTCCG 60.108 44.000 0.00 0.00 0.00 4.30
117 118 5.753438 TGCTATGTAGACGTTCATGATTTCC 59.247 40.000 0.00 0.00 0.00 3.13
118 119 6.828502 TGCTATGTAGACGTTCATGATTTC 57.171 37.500 0.00 0.00 0.00 2.17
119 120 6.238211 GCTTGCTATGTAGACGTTCATGATTT 60.238 38.462 0.00 0.00 0.00 2.17
120 121 5.235186 GCTTGCTATGTAGACGTTCATGATT 59.765 40.000 0.00 0.00 0.00 2.57
121 122 4.747108 GCTTGCTATGTAGACGTTCATGAT 59.253 41.667 0.00 0.00 0.00 2.45
122 123 4.112634 GCTTGCTATGTAGACGTTCATGA 58.887 43.478 10.54 0.00 0.00 3.07
123 124 4.115516 AGCTTGCTATGTAGACGTTCATG 58.884 43.478 10.54 0.00 0.00 3.07
124 125 4.392921 AGCTTGCTATGTAGACGTTCAT 57.607 40.909 0.00 0.00 0.00 2.57
125 126 3.868757 AGCTTGCTATGTAGACGTTCA 57.131 42.857 0.00 0.00 0.00 3.18
126 127 4.174009 TCAAGCTTGCTATGTAGACGTTC 58.826 43.478 21.99 0.00 0.00 3.95
127 128 4.188247 TCAAGCTTGCTATGTAGACGTT 57.812 40.909 21.99 0.00 0.00 3.99
128 129 3.868757 TCAAGCTTGCTATGTAGACGT 57.131 42.857 21.99 0.00 0.00 4.34
129 130 5.530519 TTTTCAAGCTTGCTATGTAGACG 57.469 39.130 21.99 0.00 0.00 4.18
149 150 7.776030 TCCCATACCATGATATAACACGTTTTT 59.224 33.333 0.00 0.00 0.00 1.94
150 151 7.284074 TCCCATACCATGATATAACACGTTTT 58.716 34.615 0.00 0.00 0.00 2.43
151 152 6.833041 TCCCATACCATGATATAACACGTTT 58.167 36.000 0.00 0.00 0.00 3.60
152 153 6.428083 TCCCATACCATGATATAACACGTT 57.572 37.500 0.00 0.00 0.00 3.99
153 154 6.406370 CATCCCATACCATGATATAACACGT 58.594 40.000 0.00 0.00 0.00 4.49
154 155 5.817296 CCATCCCATACCATGATATAACACG 59.183 44.000 0.00 0.00 0.00 4.49
155 156 6.957631 TCCATCCCATACCATGATATAACAC 58.042 40.000 0.00 0.00 0.00 3.32
156 157 7.311865 CCTTCCATCCCATACCATGATATAACA 60.312 40.741 0.00 0.00 0.00 2.41
157 158 7.056635 CCTTCCATCCCATACCATGATATAAC 58.943 42.308 0.00 0.00 0.00 1.89
158 159 6.971240 TCCTTCCATCCCATACCATGATATAA 59.029 38.462 0.00 0.00 0.00 0.98
159 160 6.520375 TCCTTCCATCCCATACCATGATATA 58.480 40.000 0.00 0.00 0.00 0.86
160 161 5.361780 TCCTTCCATCCCATACCATGATAT 58.638 41.667 0.00 0.00 0.00 1.63
161 162 4.773630 TCCTTCCATCCCATACCATGATA 58.226 43.478 0.00 0.00 0.00 2.15
162 163 3.590630 CTCCTTCCATCCCATACCATGAT 59.409 47.826 0.00 0.00 0.00 2.45
163 164 2.981784 CTCCTTCCATCCCATACCATGA 59.018 50.000 0.00 0.00 0.00 3.07
164 165 2.713167 ACTCCTTCCATCCCATACCATG 59.287 50.000 0.00 0.00 0.00 3.66
165 166 3.080660 ACTCCTTCCATCCCATACCAT 57.919 47.619 0.00 0.00 0.00 3.55
166 167 2.587060 ACTCCTTCCATCCCATACCA 57.413 50.000 0.00 0.00 0.00 3.25
167 168 3.579151 GAGTACTCCTTCCATCCCATACC 59.421 52.174 12.13 0.00 0.00 2.73
168 169 3.579151 GGAGTACTCCTTCCATCCCATAC 59.421 52.174 31.12 2.69 46.16 2.39
169 170 3.858135 GGAGTACTCCTTCCATCCCATA 58.142 50.000 31.12 0.00 46.16 2.74
170 171 2.695585 GGAGTACTCCTTCCATCCCAT 58.304 52.381 31.12 0.00 46.16 4.00
171 172 2.176247 GGAGTACTCCTTCCATCCCA 57.824 55.000 31.12 0.00 46.16 4.37
182 183 4.081198 GGATGGATCATGGATGGAGTACTC 60.081 50.000 14.87 14.87 0.00 2.59
183 184 3.843027 GGATGGATCATGGATGGAGTACT 59.157 47.826 0.00 0.00 0.00 2.73
184 185 3.584406 TGGATGGATCATGGATGGAGTAC 59.416 47.826 0.00 0.00 0.00 2.73
185 186 3.873062 TGGATGGATCATGGATGGAGTA 58.127 45.455 0.00 0.00 0.00 2.59
186 187 2.709966 TGGATGGATCATGGATGGAGT 58.290 47.619 0.00 0.00 0.00 3.85
187 188 5.648330 ATATGGATGGATCATGGATGGAG 57.352 43.478 0.00 0.00 0.00 3.86
199 200 9.438095 ACCCTCTCCTATATATATATGGATGGA 57.562 37.037 23.41 18.94 0.00 3.41
200 201 9.707957 GACCCTCTCCTATATATATATGGATGG 57.292 40.741 15.65 18.37 0.00 3.51
210 211 9.845214 AAACACATTAGACCCTCTCCTATATAT 57.155 33.333 0.00 0.00 0.00 0.86
211 212 9.670442 AAAACACATTAGACCCTCTCCTATATA 57.330 33.333 0.00 0.00 0.00 0.86
212 213 8.568617 AAAACACATTAGACCCTCTCCTATAT 57.431 34.615 0.00 0.00 0.00 0.86
213 214 7.989947 AAAACACATTAGACCCTCTCCTATA 57.010 36.000 0.00 0.00 0.00 1.31
214 215 6.893020 AAAACACATTAGACCCTCTCCTAT 57.107 37.500 0.00 0.00 0.00 2.57
215 216 6.697641 AAAAACACATTAGACCCTCTCCTA 57.302 37.500 0.00 0.00 0.00 2.94
216 217 5.584551 AAAAACACATTAGACCCTCTCCT 57.415 39.130 0.00 0.00 0.00 3.69
235 236 8.458573 TCAATAGTAAAAGGCAGTCTCAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
236 237 8.635765 ATCAATAGTAAAAGGCAGTCTCAAAA 57.364 30.769 0.00 0.00 0.00 2.44
237 238 9.733556 TTATCAATAGTAAAAGGCAGTCTCAAA 57.266 29.630 0.00 0.00 0.00 2.69
238 239 9.383519 CTTATCAATAGTAAAAGGCAGTCTCAA 57.616 33.333 0.00 0.00 0.00 3.02
239 240 8.758829 TCTTATCAATAGTAAAAGGCAGTCTCA 58.241 33.333 0.00 0.00 0.00 3.27
240 241 9.771534 ATCTTATCAATAGTAAAAGGCAGTCTC 57.228 33.333 0.00 0.00 0.00 3.36
269 270 9.836864 TGCAAGATTTTCACACTCATATACTAT 57.163 29.630 0.00 0.00 0.00 2.12
270 271 9.836864 ATGCAAGATTTTCACACTCATATACTA 57.163 29.630 0.00 0.00 0.00 1.82
271 272 8.618677 CATGCAAGATTTTCACACTCATATACT 58.381 33.333 0.00 0.00 0.00 2.12
272 273 8.400947 ACATGCAAGATTTTCACACTCATATAC 58.599 33.333 0.00 0.00 0.00 1.47
273 274 8.510243 ACATGCAAGATTTTCACACTCATATA 57.490 30.769 0.00 0.00 0.00 0.86
274 275 7.121611 TGACATGCAAGATTTTCACACTCATAT 59.878 33.333 0.00 0.00 0.00 1.78
275 276 6.430616 TGACATGCAAGATTTTCACACTCATA 59.569 34.615 0.00 0.00 0.00 2.15
276 277 5.242171 TGACATGCAAGATTTTCACACTCAT 59.758 36.000 0.00 0.00 0.00 2.90
277 278 4.579753 TGACATGCAAGATTTTCACACTCA 59.420 37.500 0.00 0.00 0.00 3.41
278 279 5.112220 TGACATGCAAGATTTTCACACTC 57.888 39.130 0.00 0.00 0.00 3.51
279 280 5.717078 ATGACATGCAAGATTTTCACACT 57.283 34.783 0.00 0.00 0.00 3.55
280 281 9.740239 AATATATGACATGCAAGATTTTCACAC 57.260 29.630 0.00 0.00 0.00 3.82
288 289 9.682465 AGAGCAATAATATATGACATGCAAGAT 57.318 29.630 10.78 0.00 34.89 2.40
292 293 8.872845 CGTTAGAGCAATAATATATGACATGCA 58.127 33.333 10.78 0.00 34.89 3.96
293 294 8.873830 ACGTTAGAGCAATAATATATGACATGC 58.126 33.333 0.00 2.62 0.00 4.06
295 296 9.929180 ACACGTTAGAGCAATAATATATGACAT 57.071 29.630 0.00 0.00 0.00 3.06
296 297 9.191995 CACACGTTAGAGCAATAATATATGACA 57.808 33.333 0.00 0.00 0.00 3.58
297 298 8.648097 CCACACGTTAGAGCAATAATATATGAC 58.352 37.037 0.00 0.00 0.00 3.06
298 299 8.364894 ACCACACGTTAGAGCAATAATATATGA 58.635 33.333 0.00 0.00 0.00 2.15
299 300 8.435430 CACCACACGTTAGAGCAATAATATATG 58.565 37.037 0.00 0.00 0.00 1.78
300 301 8.364894 TCACCACACGTTAGAGCAATAATATAT 58.635 33.333 0.00 0.00 0.00 0.86
301 302 7.718525 TCACCACACGTTAGAGCAATAATATA 58.281 34.615 0.00 0.00 0.00 0.86
302 303 6.578944 TCACCACACGTTAGAGCAATAATAT 58.421 36.000 0.00 0.00 0.00 1.28
303 304 5.968254 TCACCACACGTTAGAGCAATAATA 58.032 37.500 0.00 0.00 0.00 0.98
304 305 4.827692 TCACCACACGTTAGAGCAATAAT 58.172 39.130 0.00 0.00 0.00 1.28
305 306 4.260139 TCACCACACGTTAGAGCAATAA 57.740 40.909 0.00 0.00 0.00 1.40
306 307 3.945981 TCACCACACGTTAGAGCAATA 57.054 42.857 0.00 0.00 0.00 1.90
307 308 2.831685 TCACCACACGTTAGAGCAAT 57.168 45.000 0.00 0.00 0.00 3.56
308 309 2.605837 TTCACCACACGTTAGAGCAA 57.394 45.000 0.00 0.00 0.00 3.91
309 310 2.159014 ACTTTCACCACACGTTAGAGCA 60.159 45.455 0.00 0.00 0.00 4.26
310 311 2.480845 ACTTTCACCACACGTTAGAGC 58.519 47.619 0.00 0.00 0.00 4.09
311 312 3.673809 GCTACTTTCACCACACGTTAGAG 59.326 47.826 0.00 0.00 0.00 2.43
312 313 3.553508 GGCTACTTTCACCACACGTTAGA 60.554 47.826 0.00 0.00 0.00 2.10
313 314 2.735134 GGCTACTTTCACCACACGTTAG 59.265 50.000 0.00 0.00 0.00 2.34
314 315 2.366266 AGGCTACTTTCACCACACGTTA 59.634 45.455 0.00 0.00 0.00 3.18
315 316 1.140252 AGGCTACTTTCACCACACGTT 59.860 47.619 0.00 0.00 0.00 3.99
316 317 0.756903 AGGCTACTTTCACCACACGT 59.243 50.000 0.00 0.00 0.00 4.49
317 318 1.429463 GAGGCTACTTTCACCACACG 58.571 55.000 0.00 0.00 0.00 4.49
318 319 1.000506 TCGAGGCTACTTTCACCACAC 59.999 52.381 0.00 0.00 0.00 3.82
319 320 1.334160 TCGAGGCTACTTTCACCACA 58.666 50.000 0.00 0.00 0.00 4.17
320 321 2.450609 TTCGAGGCTACTTTCACCAC 57.549 50.000 0.00 0.00 0.00 4.16
321 322 3.478857 TTTTCGAGGCTACTTTCACCA 57.521 42.857 0.00 0.00 0.00 4.17
322 323 3.562557 TGTTTTTCGAGGCTACTTTCACC 59.437 43.478 0.00 0.00 0.00 4.02
323 324 4.034742 TGTGTTTTTCGAGGCTACTTTCAC 59.965 41.667 0.00 0.00 0.00 3.18
324 325 4.193090 TGTGTTTTTCGAGGCTACTTTCA 58.807 39.130 0.00 0.00 0.00 2.69
325 326 4.806342 TGTGTTTTTCGAGGCTACTTTC 57.194 40.909 0.00 0.00 0.00 2.62
326 327 5.767816 AATGTGTTTTTCGAGGCTACTTT 57.232 34.783 0.00 0.00 0.00 2.66
327 328 5.411669 CCTAATGTGTTTTTCGAGGCTACTT 59.588 40.000 0.00 0.00 0.00 2.24
328 329 4.935808 CCTAATGTGTTTTTCGAGGCTACT 59.064 41.667 0.00 0.00 0.00 2.57
329 330 4.436986 GCCTAATGTGTTTTTCGAGGCTAC 60.437 45.833 2.77 0.00 43.77 3.58
330 331 3.687698 GCCTAATGTGTTTTTCGAGGCTA 59.312 43.478 2.77 0.00 43.77 3.93
331 332 2.488153 GCCTAATGTGTTTTTCGAGGCT 59.512 45.455 2.77 0.00 43.77 4.58
332 333 2.415491 GGCCTAATGTGTTTTTCGAGGC 60.415 50.000 0.00 1.30 45.90 4.70
333 334 2.163613 GGGCCTAATGTGTTTTTCGAGG 59.836 50.000 0.84 0.00 0.00 4.63
334 335 3.081804 AGGGCCTAATGTGTTTTTCGAG 58.918 45.455 2.82 0.00 0.00 4.04
335 336 2.817258 CAGGGCCTAATGTGTTTTTCGA 59.183 45.455 5.28 0.00 0.00 3.71
336 337 2.556622 ACAGGGCCTAATGTGTTTTTCG 59.443 45.455 5.28 0.00 0.00 3.46
337 338 5.914898 ATACAGGGCCTAATGTGTTTTTC 57.085 39.130 5.28 0.00 0.00 2.29
338 339 6.249951 TGTATACAGGGCCTAATGTGTTTTT 58.750 36.000 5.28 0.00 0.00 1.94
339 340 5.822204 TGTATACAGGGCCTAATGTGTTTT 58.178 37.500 5.28 0.00 0.00 2.43
340 341 5.444744 TGTATACAGGGCCTAATGTGTTT 57.555 39.130 5.28 0.00 0.00 2.83
341 342 5.376625 CATGTATACAGGGCCTAATGTGTT 58.623 41.667 5.28 8.23 0.00 3.32
342 343 4.202461 CCATGTATACAGGGCCTAATGTGT 60.202 45.833 22.58 2.54 41.16 3.72
343 344 4.041567 TCCATGTATACAGGGCCTAATGTG 59.958 45.833 27.87 9.72 46.58 3.21
344 345 4.239495 TCCATGTATACAGGGCCTAATGT 58.761 43.478 27.87 3.44 46.58 2.71
345 346 4.908601 TCCATGTATACAGGGCCTAATG 57.091 45.455 27.87 11.05 46.58 1.90
346 347 6.512120 TCTATCCATGTATACAGGGCCTAAT 58.488 40.000 27.87 19.14 46.58 1.73
347 348 5.910931 TCTATCCATGTATACAGGGCCTAA 58.089 41.667 27.87 13.88 46.58 2.69
348 349 5.519808 CTCTATCCATGTATACAGGGCCTA 58.480 45.833 27.87 20.05 46.58 3.93
349 350 4.357325 CTCTATCCATGTATACAGGGCCT 58.643 47.826 27.87 20.01 46.58 5.19
350 351 3.452627 CCTCTATCCATGTATACAGGGCC 59.547 52.174 27.87 0.00 46.58 5.80
351 352 4.353777 TCCTCTATCCATGTATACAGGGC 58.646 47.826 27.87 0.00 46.58 5.19
353 354 7.340743 CCTACTTCCTCTATCCATGTATACAGG 59.659 44.444 11.91 11.22 0.00 4.00
354 355 7.891183 ACCTACTTCCTCTATCCATGTATACAG 59.109 40.741 11.91 3.82 0.00 2.74
355 356 7.766628 ACCTACTTCCTCTATCCATGTATACA 58.233 38.462 8.27 8.27 0.00 2.29
356 357 8.524487 CAACCTACTTCCTCTATCCATGTATAC 58.476 40.741 0.00 0.00 0.00 1.47
357 358 8.453681 TCAACCTACTTCCTCTATCCATGTATA 58.546 37.037 0.00 0.00 0.00 1.47
358 359 7.306013 TCAACCTACTTCCTCTATCCATGTAT 58.694 38.462 0.00 0.00 0.00 2.29
359 360 6.679542 TCAACCTACTTCCTCTATCCATGTA 58.320 40.000 0.00 0.00 0.00 2.29
360 361 5.529289 TCAACCTACTTCCTCTATCCATGT 58.471 41.667 0.00 0.00 0.00 3.21
361 362 6.678568 ATCAACCTACTTCCTCTATCCATG 57.321 41.667 0.00 0.00 0.00 3.66
362 363 7.420680 CCAAATCAACCTACTTCCTCTATCCAT 60.421 40.741 0.00 0.00 0.00 3.41
363 364 6.126768 CCAAATCAACCTACTTCCTCTATCCA 60.127 42.308 0.00 0.00 0.00 3.41
364 365 6.292150 CCAAATCAACCTACTTCCTCTATCC 58.708 44.000 0.00 0.00 0.00 2.59
365 366 6.292150 CCCAAATCAACCTACTTCCTCTATC 58.708 44.000 0.00 0.00 0.00 2.08
366 367 5.132816 CCCCAAATCAACCTACTTCCTCTAT 59.867 44.000 0.00 0.00 0.00 1.98
367 368 4.473559 CCCCAAATCAACCTACTTCCTCTA 59.526 45.833 0.00 0.00 0.00 2.43
368 369 3.267031 CCCCAAATCAACCTACTTCCTCT 59.733 47.826 0.00 0.00 0.00 3.69
369 370 3.621558 CCCCAAATCAACCTACTTCCTC 58.378 50.000 0.00 0.00 0.00 3.71
370 371 2.311841 CCCCCAAATCAACCTACTTCCT 59.688 50.000 0.00 0.00 0.00 3.36
371 372 2.310647 TCCCCCAAATCAACCTACTTCC 59.689 50.000 0.00 0.00 0.00 3.46
372 373 3.621558 CTCCCCCAAATCAACCTACTTC 58.378 50.000 0.00 0.00 0.00 3.01
373 374 2.311841 CCTCCCCCAAATCAACCTACTT 59.688 50.000 0.00 0.00 0.00 2.24
374 375 1.923148 CCTCCCCCAAATCAACCTACT 59.077 52.381 0.00 0.00 0.00 2.57
375 376 1.920351 TCCTCCCCCAAATCAACCTAC 59.080 52.381 0.00 0.00 0.00 3.18
376 377 2.369668 TCCTCCCCCAAATCAACCTA 57.630 50.000 0.00 0.00 0.00 3.08
377 378 1.570979 GATCCTCCCCCAAATCAACCT 59.429 52.381 0.00 0.00 0.00 3.50
378 379 1.287739 TGATCCTCCCCCAAATCAACC 59.712 52.381 0.00 0.00 0.00 3.77
379 380 2.024941 ACTGATCCTCCCCCAAATCAAC 60.025 50.000 0.00 0.00 0.00 3.18
380 381 2.025037 CACTGATCCTCCCCCAAATCAA 60.025 50.000 0.00 0.00 0.00 2.57
381 382 1.565759 CACTGATCCTCCCCCAAATCA 59.434 52.381 0.00 0.00 0.00 2.57
382 383 1.566231 ACACTGATCCTCCCCCAAATC 59.434 52.381 0.00 0.00 0.00 2.17
383 384 1.686236 ACACTGATCCTCCCCCAAAT 58.314 50.000 0.00 0.00 0.00 2.32
384 385 1.354368 GAACACTGATCCTCCCCCAAA 59.646 52.381 0.00 0.00 0.00 3.28
385 386 0.991920 GAACACTGATCCTCCCCCAA 59.008 55.000 0.00 0.00 0.00 4.12
386 387 0.119155 AGAACACTGATCCTCCCCCA 59.881 55.000 0.00 0.00 0.00 4.96
387 388 0.543749 CAGAACACTGATCCTCCCCC 59.456 60.000 0.00 0.00 33.94 5.40
388 389 0.543749 CCAGAACACTGATCCTCCCC 59.456 60.000 0.00 0.00 33.94 4.81
389 390 1.573108 TCCAGAACACTGATCCTCCC 58.427 55.000 0.00 0.00 33.94 4.30
390 391 3.703001 TTTCCAGAACACTGATCCTCC 57.297 47.619 0.00 0.00 33.94 4.30
391 392 4.195416 GGATTTCCAGAACACTGATCCTC 58.805 47.826 0.00 0.00 33.52 3.71
392 393 3.588842 TGGATTTCCAGAACACTGATCCT 59.411 43.478 13.55 0.00 42.01 3.24
393 394 3.955471 TGGATTTCCAGAACACTGATCC 58.045 45.455 0.00 0.00 42.01 3.36
406 407 0.178992 TGGCCGATGGATGGATTTCC 60.179 55.000 0.00 0.00 36.24 3.13
407 408 1.202806 TCTGGCCGATGGATGGATTTC 60.203 52.381 0.00 0.00 0.00 2.17
408 409 0.846015 TCTGGCCGATGGATGGATTT 59.154 50.000 0.00 0.00 0.00 2.17
409 410 0.109342 GTCTGGCCGATGGATGGATT 59.891 55.000 0.00 0.00 0.00 3.01
410 411 1.757306 GTCTGGCCGATGGATGGAT 59.243 57.895 0.00 0.00 0.00 3.41
411 412 2.796193 CGTCTGGCCGATGGATGGA 61.796 63.158 0.00 0.00 0.00 3.41
412 413 2.280389 CGTCTGGCCGATGGATGG 60.280 66.667 0.00 0.00 0.00 3.51
413 414 2.969238 GCGTCTGGCCGATGGATG 60.969 66.667 15.51 9.71 34.80 3.51
431 432 4.711949 AGACTGCTTGCTGGCCGG 62.712 66.667 7.41 7.41 0.00 6.13
432 433 3.429141 CAGACTGCTTGCTGGCCG 61.429 66.667 0.00 0.00 0.00 6.13
433 434 1.174712 TTTCAGACTGCTTGCTGGCC 61.175 55.000 0.00 0.00 33.05 5.36
434 435 0.039708 GTTTCAGACTGCTTGCTGGC 60.040 55.000 0.00 0.92 33.05 4.85
435 436 1.602311 AGTTTCAGACTGCTTGCTGG 58.398 50.000 0.00 0.00 37.17 4.85
436 437 3.314635 AGAAAGTTTCAGACTGCTTGCTG 59.685 43.478 17.65 0.00 39.00 4.41
437 438 3.549794 AGAAAGTTTCAGACTGCTTGCT 58.450 40.909 17.65 0.00 39.00 3.91
438 439 3.978718 AGAAAGTTTCAGACTGCTTGC 57.021 42.857 17.65 0.00 39.00 4.01
439 440 5.067023 AGGAAAGAAAGTTTCAGACTGCTTG 59.933 40.000 17.65 0.00 39.00 4.01
440 441 5.196695 AGGAAAGAAAGTTTCAGACTGCTT 58.803 37.500 17.65 0.00 39.00 3.91
441 442 4.786425 AGGAAAGAAAGTTTCAGACTGCT 58.214 39.130 17.65 6.45 39.00 4.24
442 443 5.506686 AAGGAAAGAAAGTTTCAGACTGC 57.493 39.130 17.65 4.42 39.00 4.40
443 444 5.742446 CGAAGGAAAGAAAGTTTCAGACTG 58.258 41.667 17.65 0.00 39.00 3.51
444 445 5.993106 CGAAGGAAAGAAAGTTTCAGACT 57.007 39.130 17.65 7.23 41.47 3.24
462 463 1.739562 GAGTGCAGGCTGTCCGAAG 60.740 63.158 17.16 0.00 37.47 3.79
463 464 2.210013 AGAGTGCAGGCTGTCCGAA 61.210 57.895 17.16 0.00 37.47 4.30
464 465 2.601666 AGAGTGCAGGCTGTCCGA 60.602 61.111 17.16 0.00 37.47 4.55
465 466 2.433838 CAGAGTGCAGGCTGTCCG 60.434 66.667 17.16 0.00 37.47 4.79
466 467 0.250467 TTTCAGAGTGCAGGCTGTCC 60.250 55.000 17.16 6.90 33.90 4.02
467 468 0.871057 GTTTCAGAGTGCAGGCTGTC 59.129 55.000 17.16 9.10 33.90 3.51
468 469 0.471617 AGTTTCAGAGTGCAGGCTGT 59.528 50.000 17.16 0.00 33.90 4.40
469 470 1.266175 CAAGTTTCAGAGTGCAGGCTG 59.734 52.381 10.94 10.94 0.00 4.85
470 471 1.602311 CAAGTTTCAGAGTGCAGGCT 58.398 50.000 0.00 0.00 0.00 4.58
471 472 0.595095 CCAAGTTTCAGAGTGCAGGC 59.405 55.000 0.00 0.00 0.00 4.85
472 473 0.595095 GCCAAGTTTCAGAGTGCAGG 59.405 55.000 0.00 0.00 0.00 4.85
473 474 1.534595 GAGCCAAGTTTCAGAGTGCAG 59.465 52.381 0.00 0.00 0.00 4.41
474 475 1.141657 AGAGCCAAGTTTCAGAGTGCA 59.858 47.619 0.00 0.00 0.00 4.57
475 476 1.534595 CAGAGCCAAGTTTCAGAGTGC 59.465 52.381 0.00 0.00 0.00 4.40
476 477 2.149578 CCAGAGCCAAGTTTCAGAGTG 58.850 52.381 0.00 0.00 0.00 3.51
477 478 1.072965 CCCAGAGCCAAGTTTCAGAGT 59.927 52.381 0.00 0.00 0.00 3.24
478 479 1.349026 TCCCAGAGCCAAGTTTCAGAG 59.651 52.381 0.00 0.00 0.00 3.35
479 480 1.434188 TCCCAGAGCCAAGTTTCAGA 58.566 50.000 0.00 0.00 0.00 3.27
480 481 2.276732 TTCCCAGAGCCAAGTTTCAG 57.723 50.000 0.00 0.00 0.00 3.02
481 482 2.517959 CATTCCCAGAGCCAAGTTTCA 58.482 47.619 0.00 0.00 0.00 2.69
482 483 1.821136 CCATTCCCAGAGCCAAGTTTC 59.179 52.381 0.00 0.00 0.00 2.78
483 484 1.147817 ACCATTCCCAGAGCCAAGTTT 59.852 47.619 0.00 0.00 0.00 2.66
484 485 0.779997 ACCATTCCCAGAGCCAAGTT 59.220 50.000 0.00 0.00 0.00 2.66
485 486 0.038744 CACCATTCCCAGAGCCAAGT 59.961 55.000 0.00 0.00 0.00 3.16
486 487 1.318158 GCACCATTCCCAGAGCCAAG 61.318 60.000 0.00 0.00 0.00 3.61
487 488 1.304381 GCACCATTCCCAGAGCCAA 60.304 57.895 0.00 0.00 0.00 4.52
488 489 2.356278 GCACCATTCCCAGAGCCA 59.644 61.111 0.00 0.00 0.00 4.75
489 490 2.825836 CGCACCATTCCCAGAGCC 60.826 66.667 0.00 0.00 0.00 4.70
490 491 3.512516 GCGCACCATTCCCAGAGC 61.513 66.667 0.30 0.00 0.00 4.09
491 492 3.197790 CGCGCACCATTCCCAGAG 61.198 66.667 8.75 0.00 0.00 3.35
507 508 1.438710 CAAGGTTTTCAGCGACGCG 60.439 57.895 15.18 3.53 0.00 6.01
508 509 1.082104 CCAAGGTTTTCAGCGACGC 60.082 57.895 13.03 13.03 0.00 5.19
509 510 0.882927 TCCCAAGGTTTTCAGCGACG 60.883 55.000 0.00 0.00 0.00 5.12
510 511 1.534729 ATCCCAAGGTTTTCAGCGAC 58.465 50.000 0.00 0.00 0.00 5.19
511 512 2.286365 AATCCCAAGGTTTTCAGCGA 57.714 45.000 0.00 0.00 0.00 4.93
512 513 3.385193 AAAATCCCAAGGTTTTCAGCG 57.615 42.857 0.00 0.00 0.00 5.18
541 542 2.281276 AGTTGGGCCGGTTCGTTC 60.281 61.111 1.90 0.00 0.00 3.95
610 611 4.676586 CGTTCGCGTTGGGTTGGC 62.677 66.667 5.77 0.00 35.57 4.52
621 622 0.859788 CTCTCTCTTCTCGCGTTCGC 60.860 60.000 5.77 7.14 35.26 4.70
622 623 0.722282 TCTCTCTCTTCTCGCGTTCG 59.278 55.000 5.77 0.00 0.00 3.95
623 624 3.414549 AATCTCTCTCTTCTCGCGTTC 57.585 47.619 5.77 0.00 0.00 3.95
675 684 0.253327 AGGGGCGGAAGAGATTGAAC 59.747 55.000 0.00 0.00 0.00 3.18
676 685 0.253044 CAGGGGCGGAAGAGATTGAA 59.747 55.000 0.00 0.00 0.00 2.69
678 687 1.153086 CCAGGGGCGGAAGAGATTG 60.153 63.158 0.00 0.00 0.00 2.67
679 688 3.049080 GCCAGGGGCGGAAGAGATT 62.049 63.158 0.00 0.00 39.62 2.40
680 689 3.483869 GCCAGGGGCGGAAGAGAT 61.484 66.667 0.00 0.00 39.62 2.75
779 788 4.891727 CTGTCGGGGAATCGGCCG 62.892 72.222 22.12 22.12 33.30 6.13
780 789 3.467226 TCTGTCGGGGAATCGGCC 61.467 66.667 0.00 0.00 33.30 6.13
832 847 0.692756 GGGGAGGGGAGAAGAAGAGG 60.693 65.000 0.00 0.00 0.00 3.69
875 892 0.183014 TAAACCAGGCGAACCAACCA 59.817 50.000 0.00 0.00 39.06 3.67
911 928 2.537143 GGAGGAGCTAATAATCCCCGA 58.463 52.381 0.00 0.00 36.14 5.14
1116 1148 3.249189 GGCACCACCACCTCCAGA 61.249 66.667 0.00 0.00 38.86 3.86
1593 1625 1.374758 CGCCAGCGTCTTCTTCCTT 60.375 57.895 3.35 0.00 34.35 3.36
1645 1677 2.820479 GAGAGGCTGCTGCTGCTG 60.820 66.667 26.79 16.73 40.48 4.41
1646 1678 4.098722 GGAGAGGCTGCTGCTGCT 62.099 66.667 26.79 15.21 40.48 4.24
1647 1679 4.405671 TGGAGAGGCTGCTGCTGC 62.406 66.667 21.42 21.42 39.59 5.25
1929 1961 2.803133 CGACTTCTTCAGAACACAGCCA 60.803 50.000 0.00 0.00 0.00 4.75
2013 2045 0.756294 ACCACTCATCGGACAACACA 59.244 50.000 0.00 0.00 0.00 3.72
2032 2064 1.533033 TCCTGCCCTTGTCAGTCGA 60.533 57.895 0.00 0.00 0.00 4.20
2145 2177 0.788995 CAACACTCTTCAGCAGCTCG 59.211 55.000 0.00 0.00 0.00 5.03
2373 2405 1.196354 GCAAGAGCACTGCTGTACAAG 59.804 52.381 8.69 0.00 39.88 3.16
2548 2580 1.284785 CCCTCCAGGTATCTTTGGCAA 59.715 52.381 0.00 0.00 34.38 4.52
2562 2594 2.550277 TGCTCACTTCTATCCCTCCA 57.450 50.000 0.00 0.00 0.00 3.86
2597 2629 3.391965 GCACATGAAGACCAAAATTGCA 58.608 40.909 0.00 0.00 0.00 4.08
2658 2690 2.472695 TGTTGCTACCTACCAGCTTG 57.527 50.000 0.00 0.00 39.83 4.01
2721 2753 3.919197 GCTCTTTCTTGATTGCTGCTTTC 59.081 43.478 0.00 0.00 0.00 2.62
2745 2777 5.010213 AGGAATATAGTCGCTCTTCTTCACC 59.990 44.000 0.00 0.00 0.00 4.02
2911 2943 1.568504 TCGGACACCAGCCTTTCTAT 58.431 50.000 0.00 0.00 0.00 1.98
2928 2960 9.571810 TGAATTTTATCTTGGATTTTGACATCG 57.428 29.630 0.00 0.00 0.00 3.84
3099 3134 8.365399 TCATGCTTACAACAATGCTAGTATAC 57.635 34.615 0.00 0.00 0.00 1.47
3197 3232 5.939883 ACTCAGCTGCAAGATAATACAACAA 59.060 36.000 9.47 0.00 34.07 2.83
3533 3571 6.627953 GCCTTGTATTGTTGTTGCCTATGAAT 60.628 38.462 0.00 0.00 0.00 2.57
3542 3580 3.252215 TCCTTCGCCTTGTATTGTTGTTG 59.748 43.478 0.00 0.00 0.00 3.33
3543 3581 3.482436 TCCTTCGCCTTGTATTGTTGTT 58.518 40.909 0.00 0.00 0.00 2.83
3544 3582 3.134574 TCCTTCGCCTTGTATTGTTGT 57.865 42.857 0.00 0.00 0.00 3.32
3564 3602 6.240549 AGTCTACCGAGATTGGATCAAATT 57.759 37.500 0.00 0.00 33.14 1.82
3679 3717 1.826385 CTGATGGGGTCCAGTTGAAC 58.174 55.000 0.00 0.00 36.75 3.18
3709 3747 5.304778 TCAACAAAGGACTCGAATTCATCA 58.695 37.500 6.22 0.00 0.00 3.07
3727 3765 5.629133 GCAAGGAGGATATGTACCTTCAACA 60.629 44.000 0.00 0.00 40.21 3.33
3728 3766 4.816925 GCAAGGAGGATATGTACCTTCAAC 59.183 45.833 0.00 0.00 40.21 3.18
3785 3824 5.524646 ACTCCTGCAAACAAATTTTCATGTG 59.475 36.000 0.00 0.00 0.00 3.21
3852 3892 3.264998 TCATCTTTGTCGGCATCATCA 57.735 42.857 0.00 0.00 0.00 3.07
3860 3900 5.297527 TCATCATTGGAATCATCTTTGTCGG 59.702 40.000 0.00 0.00 0.00 4.79
3896 3936 0.249322 AACTCGTTCACCCACAGTCG 60.249 55.000 0.00 0.00 0.00 4.18
3898 3938 0.179056 CCAACTCGTTCACCCACAGT 60.179 55.000 0.00 0.00 0.00 3.55
3911 3951 5.354513 GGTTTATCCAAGTTAGAGCCAACTC 59.645 44.000 0.00 0.00 37.78 3.01
3938 3978 8.462016 CAATTCCCTTCTACTTCCATTAGTTTG 58.538 37.037 0.00 0.00 0.00 2.93
3969 4009 8.035394 AGATAACTGCTACATGGAAATATACCG 58.965 37.037 0.00 0.00 0.00 4.02
4121 4161 5.090845 TGCACCTATATCCCTTGTATGCTA 58.909 41.667 0.00 0.00 0.00 3.49
4144 4211 8.974060 TTAAAGTCTAAACCACAGAACAAGAT 57.026 30.769 0.00 0.00 0.00 2.40
4198 4265 5.900339 TCACAAAGACACGAGAAATACAC 57.100 39.130 0.00 0.00 0.00 2.90
4199 4266 6.704050 TCAATCACAAAGACACGAGAAATACA 59.296 34.615 0.00 0.00 0.00 2.29
4200 4267 7.117241 TCAATCACAAAGACACGAGAAATAC 57.883 36.000 0.00 0.00 0.00 1.89
4201 4268 6.368791 CCTCAATCACAAAGACACGAGAAATA 59.631 38.462 0.00 0.00 0.00 1.40
4202 4269 5.180117 CCTCAATCACAAAGACACGAGAAAT 59.820 40.000 0.00 0.00 0.00 2.17
4203 4270 4.511454 CCTCAATCACAAAGACACGAGAAA 59.489 41.667 0.00 0.00 0.00 2.52
4204 4271 4.058124 CCTCAATCACAAAGACACGAGAA 58.942 43.478 0.00 0.00 0.00 2.87
4205 4272 3.069586 ACCTCAATCACAAAGACACGAGA 59.930 43.478 0.00 0.00 0.00 4.04
4206 4273 3.393800 ACCTCAATCACAAAGACACGAG 58.606 45.455 0.00 0.00 0.00 4.18
4207 4274 3.469008 ACCTCAATCACAAAGACACGA 57.531 42.857 0.00 0.00 0.00 4.35
4208 4275 5.862924 AATACCTCAATCACAAAGACACG 57.137 39.130 0.00 0.00 0.00 4.49
4249 4316 3.557054 CCATGACCGGAGAAAGACAGAAA 60.557 47.826 9.46 0.00 0.00 2.52
4250 4317 2.028112 CCATGACCGGAGAAAGACAGAA 60.028 50.000 9.46 0.00 0.00 3.02
4260 4327 5.701290 GGTTTTAGAATATCCATGACCGGAG 59.299 44.000 9.46 0.00 38.83 4.63
4305 4372 1.542915 ACAAAGCTGCTGCATACTTGG 59.457 47.619 18.42 15.40 42.74 3.61
4329 4396 7.998212 GTCATGCAGAAAAGATAAAACAAAACG 59.002 33.333 0.00 0.00 0.00 3.60
4413 4486 3.952931 TCCTCAGCTACTAGTCGAACTT 58.047 45.455 0.00 0.00 0.00 2.66
4418 4491 7.496263 TGCTATAATATCCTCAGCTACTAGTCG 59.504 40.741 0.00 0.00 33.38 4.18
4448 4521 5.248477 ACTGGCTCCAGATTAGTGTTCTTTA 59.752 40.000 21.75 0.00 46.30 1.85
4473 4546 7.377398 TGCAACTTGCTACAACATATTTGAAT 58.623 30.769 14.78 0.00 45.31 2.57
4489 4562 0.240945 ATGTAACGGCTGCAACTTGC 59.759 50.000 6.82 6.82 45.29 4.01
4633 4706 0.961019 TTTTGCCTCGCATGAGCTTT 59.039 45.000 0.00 0.00 41.13 3.51
4691 4764 2.275380 GCGTTTTCCCCTGCCATGT 61.275 57.895 0.00 0.00 0.00 3.21
4717 4790 0.251742 CCAGGGGACAAAATGCTGGA 60.252 55.000 0.00 0.00 29.02 3.86
4720 4793 0.486879 TTCCCAGGGGACAAAATGCT 59.513 50.000 6.55 0.00 45.11 3.79
4832 4905 2.032071 CGACCCCCACCAACAGAC 59.968 66.667 0.00 0.00 0.00 3.51
4859 4932 3.072476 CTGGCAGGGCAGTACAGT 58.928 61.111 14.11 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.