Multiple sequence alignment - TraesCS5D01G497000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G497000 chr5D 100.000 4575 0 0 1 4575 527429841 527434415 0.000000e+00 8449
1 TraesCS5D01G497000 chr5D 85.714 756 87 15 2427 3169 527198773 527199520 0.000000e+00 778
2 TraesCS5D01G497000 chr5D 92.715 302 13 7 965 1258 54191305 54191005 1.180000e-115 427
3 TraesCS5D01G497000 chr5A 94.035 2129 90 14 1754 3859 654561403 654563517 0.000000e+00 3193
4 TraesCS5D01G497000 chr5A 93.455 764 41 3 40 802 275074089 275074844 0.000000e+00 1125
5 TraesCS5D01G497000 chr5A 92.657 749 36 7 810 1542 654560344 654561089 0.000000e+00 1061
6 TraesCS5D01G497000 chr5A 81.786 1142 160 29 2433 3562 654408768 654409873 0.000000e+00 913
7 TraesCS5D01G497000 chr5A 94.529 329 10 5 3886 4209 654563515 654563840 6.830000e-138 501
8 TraesCS5D01G497000 chr5A 93.243 296 13 5 4278 4572 654563872 654564161 3.270000e-116 429
9 TraesCS5D01G497000 chr5A 83.588 262 30 8 4305 4563 654571381 654571632 2.750000e-57 233
10 TraesCS5D01G497000 chr5A 88.889 126 12 2 1606 1730 654561088 654561212 2.200000e-33 154
11 TraesCS5D01G497000 chr1B 95.567 767 24 3 40 805 332072350 332071593 0.000000e+00 1219
12 TraesCS5D01G497000 chr1B 89.439 303 21 5 965 1258 102154522 102154822 5.590000e-99 372
13 TraesCS5D01G497000 chr5B 94.386 766 33 3 38 802 425187602 425188358 0.000000e+00 1168
14 TraesCS5D01G497000 chr5B 91.130 823 51 12 918 1730 663796005 663796815 0.000000e+00 1096
15 TraesCS5D01G497000 chr5B 96.184 629 19 4 2427 3055 663797711 663798334 0.000000e+00 1024
16 TraesCS5D01G497000 chr5B 89.603 731 42 16 1754 2464 663796999 663797715 0.000000e+00 898
17 TraesCS5D01G497000 chr5B 86.510 682 67 13 2433 3103 663521923 663522590 0.000000e+00 726
18 TraesCS5D01G497000 chr5B 92.784 291 19 1 3231 3521 663798355 663798643 1.970000e-113 420
19 TraesCS5D01G497000 chr5B 91.722 302 11 4 4265 4562 663922701 663922992 1.530000e-109 407
20 TraesCS5D01G497000 chr5B 90.541 296 18 8 965 1252 674913393 674913686 2.580000e-102 383
21 TraesCS5D01G497000 chr5B 91.085 258 9 6 4306 4562 663800591 663800835 2.040000e-88 337
22 TraesCS5D01G497000 chr5B 84.665 313 35 8 3753 4060 663799007 663799311 2.680000e-77 300
23 TraesCS5D01G497000 chr5B 83.969 262 27 10 4306 4563 663987709 663987959 2.130000e-58 237
24 TraesCS5D01G497000 chr5B 89.764 127 9 2 3605 3731 663798814 663798936 4.740000e-35 159
25 TraesCS5D01G497000 chr5B 90.991 111 10 0 3483 3593 663798638 663798748 2.850000e-32 150
26 TraesCS5D01G497000 chr5B 84.328 134 17 3 1399 1530 663520742 663520873 1.340000e-25 128
27 TraesCS5D01G497000 chr6B 94.156 770 36 2 36 805 304152053 304151293 0.000000e+00 1164
28 TraesCS5D01G497000 chr6B 90.728 302 18 7 965 1258 619067699 619067400 1.190000e-105 394
29 TraesCS5D01G497000 chr6A 93.194 764 44 2 39 802 297519928 297520683 0.000000e+00 1116
30 TraesCS5D01G497000 chr6A 92.932 764 46 2 42 805 307990181 307989426 0.000000e+00 1105
31 TraesCS5D01G497000 chr7D 91.906 766 47 7 40 805 58053003 58052253 0.000000e+00 1057
32 TraesCS5D01G497000 chr2B 94.414 555 28 3 107 660 753947916 753948468 0.000000e+00 850
33 TraesCS5D01G497000 chr2B 88.779 303 23 8 964 1258 23657086 23656787 1.210000e-95 361
34 TraesCS5D01G497000 chr7A 90.018 551 55 0 116 666 13112860 13113410 0.000000e+00 713
35 TraesCS5D01G497000 chr7B 89.404 302 22 7 965 1258 540128980 540128681 5.590000e-99 372
36 TraesCS5D01G497000 chr3B 88.742 302 24 7 965 1258 417173243 417173542 1.210000e-95 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G497000 chr5D 527429841 527434415 4574 False 8449.0 8449 100.00000 1 4575 1 chr5D.!!$F2 4574
1 TraesCS5D01G497000 chr5D 527198773 527199520 747 False 778.0 778 85.71400 2427 3169 1 chr5D.!!$F1 742
2 TraesCS5D01G497000 chr5A 275074089 275074844 755 False 1125.0 1125 93.45500 40 802 1 chr5A.!!$F1 762
3 TraesCS5D01G497000 chr5A 654560344 654564161 3817 False 1067.6 3193 92.67060 810 4572 5 chr5A.!!$F4 3762
4 TraesCS5D01G497000 chr5A 654408768 654409873 1105 False 913.0 913 81.78600 2433 3562 1 chr5A.!!$F2 1129
5 TraesCS5D01G497000 chr1B 332071593 332072350 757 True 1219.0 1219 95.56700 40 805 1 chr1B.!!$R1 765
6 TraesCS5D01G497000 chr5B 425187602 425188358 756 False 1168.0 1168 94.38600 38 802 1 chr5B.!!$F1 764
7 TraesCS5D01G497000 chr5B 663796005 663800835 4830 False 548.0 1096 90.77575 918 4562 8 chr5B.!!$F6 3644
8 TraesCS5D01G497000 chr5B 663520742 663522590 1848 False 427.0 726 85.41900 1399 3103 2 chr5B.!!$F5 1704
9 TraesCS5D01G497000 chr6B 304151293 304152053 760 True 1164.0 1164 94.15600 36 805 1 chr6B.!!$R1 769
10 TraesCS5D01G497000 chr6A 297519928 297520683 755 False 1116.0 1116 93.19400 39 802 1 chr6A.!!$F1 763
11 TraesCS5D01G497000 chr6A 307989426 307990181 755 True 1105.0 1105 92.93200 42 805 1 chr6A.!!$R1 763
12 TraesCS5D01G497000 chr7D 58052253 58053003 750 True 1057.0 1057 91.90600 40 805 1 chr7D.!!$R1 765
13 TraesCS5D01G497000 chr2B 753947916 753948468 552 False 850.0 850 94.41400 107 660 1 chr2B.!!$F1 553
14 TraesCS5D01G497000 chr7A 13112860 13113410 550 False 713.0 713 90.01800 116 666 1 chr7A.!!$F1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 926 0.250553 CGCTAACAAACCCCACTCCA 60.251 55.0 0.0 0.0 0.00 3.86 F
1592 1630 0.250727 TGTGGCTTTCCTACTGTGCC 60.251 55.0 0.0 0.0 43.49 5.01 F
2742 3298 0.379669 GCTCATCTGGTGCCAAATCG 59.620 55.0 0.0 0.0 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2742 3298 1.696097 ATCTGGGCGTGGGTATGGTC 61.696 60.0 0.00 0.0 0.00 4.02 R
3535 4138 0.040514 CTGCGACGCAATTCACCAAA 60.041 50.0 24.51 0.0 38.41 3.28 R
4258 5689 0.311790 ACCTTCGCGACTACGACAAA 59.688 50.0 9.15 0.0 42.78 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.353394 TGTGAACTGAGGAAAGTTGTAGT 57.647 39.130 0.00 0.00 40.48 2.73
23 24 6.474140 TGTGAACTGAGGAAAGTTGTAGTA 57.526 37.500 0.00 0.00 40.48 1.82
24 25 6.513180 TGTGAACTGAGGAAAGTTGTAGTAG 58.487 40.000 0.00 0.00 40.48 2.57
25 26 6.097839 TGTGAACTGAGGAAAGTTGTAGTAGT 59.902 38.462 0.00 0.00 40.48 2.73
26 27 7.286087 TGTGAACTGAGGAAAGTTGTAGTAGTA 59.714 37.037 0.00 0.00 40.48 1.82
27 28 7.808856 GTGAACTGAGGAAAGTTGTAGTAGTAG 59.191 40.741 0.00 0.00 40.48 2.57
28 29 7.504911 TGAACTGAGGAAAGTTGTAGTAGTAGT 59.495 37.037 0.00 0.00 40.48 2.73
29 30 8.930846 AACTGAGGAAAGTTGTAGTAGTAGTA 57.069 34.615 0.00 0.00 38.95 1.82
30 31 8.930846 ACTGAGGAAAGTTGTAGTAGTAGTAA 57.069 34.615 0.00 0.00 0.00 2.24
31 32 9.531158 ACTGAGGAAAGTTGTAGTAGTAGTAAT 57.469 33.333 0.00 0.00 0.00 1.89
190 191 5.486526 CAAAGCCTACTCTCTCACAAATCT 58.513 41.667 0.00 0.00 0.00 2.40
213 214 6.952358 TCTGTCTAACACTCCTACACCTAATT 59.048 38.462 0.00 0.00 0.00 1.40
237 238 2.682269 GCCTCCTTCCAGTCTTTGATCC 60.682 54.545 0.00 0.00 0.00 3.36
269 273 1.977854 TGGTTGTGTAGCTCATCCACT 59.022 47.619 0.00 0.00 0.00 4.00
322 327 3.655486 TCGCGTTTCTCTGTTTCCATAA 58.345 40.909 5.77 0.00 0.00 1.90
412 417 2.897271 TGTAGCCACCAATCCAACAT 57.103 45.000 0.00 0.00 0.00 2.71
574 579 3.197766 GGGTGATCTTGTAGTCCATGTCA 59.802 47.826 0.00 0.00 0.00 3.58
664 669 1.204146 GCCCAACTCCTCCAGATACA 58.796 55.000 0.00 0.00 0.00 2.29
665 670 1.134371 GCCCAACTCCTCCAGATACAC 60.134 57.143 0.00 0.00 0.00 2.90
666 671 2.187958 CCCAACTCCTCCAGATACACA 58.812 52.381 0.00 0.00 0.00 3.72
667 672 2.169352 CCCAACTCCTCCAGATACACAG 59.831 54.545 0.00 0.00 0.00 3.66
668 673 3.099905 CCAACTCCTCCAGATACACAGA 58.900 50.000 0.00 0.00 0.00 3.41
669 674 3.708631 CCAACTCCTCCAGATACACAGAT 59.291 47.826 0.00 0.00 0.00 2.90
670 675 4.895889 CCAACTCCTCCAGATACACAGATA 59.104 45.833 0.00 0.00 0.00 1.98
671 676 5.221342 CCAACTCCTCCAGATACACAGATAC 60.221 48.000 0.00 0.00 0.00 2.24
720 725 3.194116 CCTTGGCAGAGCATGTTGTAAAT 59.806 43.478 0.00 0.00 0.00 1.40
812 817 5.565638 CGATGTGTCGTAGCTATTCATAGTG 59.434 44.000 0.00 0.00 42.78 2.74
827 832 7.872113 ATTCATAGTGATCCTTTGAAACTCC 57.128 36.000 15.50 0.00 42.12 3.85
841 846 2.969628 AACTCCGAATACTGCCTCTG 57.030 50.000 0.00 0.00 0.00 3.35
849 861 1.107114 ATACTGCCTCTGGAGTGACG 58.893 55.000 0.00 0.00 0.00 4.35
867 879 1.076533 CGCGCGTCAACCTAGTCAAT 61.077 55.000 24.19 0.00 0.00 2.57
887 899 1.110442 CACTTTGACTTGGTTGGCCA 58.890 50.000 0.00 0.00 44.38 5.36
899 911 2.965520 TTGGCCATCACCTGCGCTA 61.966 57.895 6.09 0.00 0.00 4.26
902 914 1.745115 GCCATCACCTGCGCTAACA 60.745 57.895 9.73 0.00 0.00 2.41
905 917 1.135689 CCATCACCTGCGCTAACAAAC 60.136 52.381 9.73 0.00 0.00 2.93
914 926 0.250553 CGCTAACAAACCCCACTCCA 60.251 55.000 0.00 0.00 0.00 3.86
927 948 2.040278 CTCCACTCCCTGCTCCCT 59.960 66.667 0.00 0.00 0.00 4.20
928 949 1.614824 CTCCACTCCCTGCTCCCTT 60.615 63.158 0.00 0.00 0.00 3.95
968 993 0.598065 AAATCGGCACAGGAGCAAAC 59.402 50.000 0.00 0.00 35.83 2.93
982 1007 3.408853 AAACCCCTAGGCCGCTCC 61.409 66.667 2.05 0.00 36.11 4.70
1368 1393 2.176045 TCGTGCTCATAAGGTCTGGAA 58.824 47.619 0.00 0.00 0.00 3.53
1376 1401 5.272283 TCATAAGGTCTGGAATTCGGTAC 57.728 43.478 0.00 0.00 0.00 3.34
1407 1437 3.047857 TGGAGTATGCTGGGAATCATGA 58.952 45.455 0.00 0.00 0.00 3.07
1477 1513 0.940126 ATGATTTGCCGCTCGATGTC 59.060 50.000 0.00 0.00 0.00 3.06
1530 1568 0.251341 GTGGCAAATCACCAGGTCCT 60.251 55.000 0.00 0.00 38.04 3.85
1532 1570 1.922447 TGGCAAATCACCAGGTCCTAT 59.078 47.619 0.00 0.00 32.06 2.57
1543 1581 3.200165 ACCAGGTCCTATCTTTGTTAGGC 59.800 47.826 0.00 0.00 36.87 3.93
1544 1582 3.199946 CCAGGTCCTATCTTTGTTAGGCA 59.800 47.826 0.00 0.00 36.87 4.75
1559 1597 5.837437 TGTTAGGCACAGTTTTATGGTTTG 58.163 37.500 0.00 0.00 0.00 2.93
1562 1600 3.133721 AGGCACAGTTTTATGGTTTGCAA 59.866 39.130 0.00 0.00 0.00 4.08
1563 1601 3.494251 GGCACAGTTTTATGGTTTGCAAG 59.506 43.478 0.00 0.00 0.00 4.01
1567 1605 5.463061 CACAGTTTTATGGTTTGCAAGAAGG 59.537 40.000 0.00 0.00 0.00 3.46
1570 1608 7.147811 ACAGTTTTATGGTTTGCAAGAAGGTAA 60.148 33.333 0.00 0.00 0.00 2.85
1573 1611 9.051679 GTTTTATGGTTTGCAAGAAGGTAAATT 57.948 29.630 0.00 0.00 0.00 1.82
1585 1623 5.887754 AGAAGGTAAATTGTGGCTTTCCTA 58.112 37.500 0.00 0.00 0.00 2.94
1591 1629 1.604604 TTGTGGCTTTCCTACTGTGC 58.395 50.000 0.00 0.00 0.00 4.57
1592 1630 0.250727 TGTGGCTTTCCTACTGTGCC 60.251 55.000 0.00 0.00 43.49 5.01
1612 1650 3.491104 GCCGATACAAGTAAGAGACAGGG 60.491 52.174 0.00 0.00 0.00 4.45
1613 1651 3.491104 CCGATACAAGTAAGAGACAGGGC 60.491 52.174 0.00 0.00 0.00 5.19
1649 1687 6.621613 AGAAGAGTTTTCACTTTTCACCAAC 58.378 36.000 8.01 0.00 43.59 3.77
1653 1691 7.762382 AGAGTTTTCACTTTTCACCAACTAAG 58.238 34.615 0.00 0.00 31.22 2.18
1654 1692 6.330278 AGTTTTCACTTTTCACCAACTAAGC 58.670 36.000 0.00 0.00 0.00 3.09
1655 1693 6.152831 AGTTTTCACTTTTCACCAACTAAGCT 59.847 34.615 0.00 0.00 0.00 3.74
1656 1694 5.499139 TTCACTTTTCACCAACTAAGCTG 57.501 39.130 0.00 0.00 0.00 4.24
1657 1695 4.776349 TCACTTTTCACCAACTAAGCTGA 58.224 39.130 0.00 0.00 0.00 4.26
1658 1696 4.816385 TCACTTTTCACCAACTAAGCTGAG 59.184 41.667 0.00 0.00 0.00 3.35
1661 1699 2.462456 TCACCAACTAAGCTGAGCAG 57.538 50.000 7.39 0.00 0.00 4.24
1671 1709 2.021355 AGCTGAGCAGTATCACAAGC 57.979 50.000 7.39 0.00 0.00 4.01
1676 1714 4.498241 CTGAGCAGTATCACAAGCTTACA 58.502 43.478 0.00 0.00 37.48 2.41
1695 1733 9.060347 AGCTTACAATACGATGATTGATGAAAT 57.940 29.630 13.67 0.00 38.83 2.17
1722 1760 1.980765 AGTCAACTCAAGGGCTGATGA 59.019 47.619 0.00 0.00 32.14 2.92
1816 2031 3.507622 CCCAAAGGAGTCCTGACAATTTC 59.492 47.826 13.89 0.00 32.13 2.17
1876 2105 4.637534 TGCTCTTTATCCAGCAATGAACTC 59.362 41.667 0.00 0.00 42.74 3.01
1932 2164 7.337942 ACAAATTGAGTGTTCAGTCTTCTTCTT 59.662 33.333 0.00 0.00 34.15 2.52
1933 2165 6.857777 ATTGAGTGTTCAGTCTTCTTCTTG 57.142 37.500 8.75 0.00 34.15 3.02
1935 2167 5.734720 TGAGTGTTCAGTCTTCTTCTTGTT 58.265 37.500 8.75 0.00 0.00 2.83
2008 2240 6.098982 AGAGTAGCATAAGAAGTGCCATAAGT 59.901 38.462 0.00 0.00 43.50 2.24
2104 2336 8.718102 TTATGTTTTGTATACTTGAGGAGAGC 57.282 34.615 4.17 0.00 0.00 4.09
2111 2343 6.810911 TGTATACTTGAGGAGAGCTGAAATC 58.189 40.000 4.17 0.00 0.00 2.17
2120 2352 2.810274 GAGAGCTGAAATCAACTGTGCA 59.190 45.455 0.00 0.00 0.00 4.57
2138 2370 8.206325 ACTGTGCAGAATCTTTCTTGTATATG 57.794 34.615 6.17 0.00 38.11 1.78
2208 2440 6.312399 TGAACACTCATTTTCGCTTATGTT 57.688 33.333 0.00 0.00 0.00 2.71
2219 2451 5.508200 TTCGCTTATGTTTGGTCTTTTGT 57.492 34.783 0.00 0.00 0.00 2.83
2323 2586 3.918591 CAGTACTTGCTGTTACGGTGTAG 59.081 47.826 0.00 0.00 0.00 2.74
2428 2704 6.072728 ACTGAACTTATCTTTGCAATGCGTTA 60.073 34.615 0.00 0.00 0.00 3.18
2429 2705 6.851609 TGAACTTATCTTTGCAATGCGTTAT 58.148 32.000 0.00 0.00 0.00 1.89
2626 3176 2.592102 ATGTTGACAACAGGCATCCT 57.408 45.000 24.25 4.96 45.95 3.24
2670 3226 3.117738 CCTCCTTCAGCTTCATACCCAAT 60.118 47.826 0.00 0.00 0.00 3.16
2742 3298 0.379669 GCTCATCTGGTGCCAAATCG 59.620 55.000 0.00 0.00 0.00 3.34
2976 3535 6.498538 CCTATTCCTCTGATCCCTACTATGT 58.501 44.000 0.00 0.00 0.00 2.29
3034 3593 6.303054 TGTGAAATCTCATTACCAGGAAACA 58.697 36.000 0.00 0.00 33.05 2.83
3043 3602 4.781775 TTACCAGGAAACAACTTCTGGA 57.218 40.909 14.23 0.00 36.55 3.86
3062 3621 4.239495 TGGAAGGTATGTATGGTAGCCAT 58.761 43.478 5.92 5.92 46.99 4.40
3096 3655 7.125356 TCCCAGTACTTTCCTCTTTCCTAATAC 59.875 40.741 0.00 0.00 0.00 1.89
3103 3662 7.182206 ACTTTCCTCTTTCCTAATACCTGCTAA 59.818 37.037 0.00 0.00 0.00 3.09
3188 3751 1.689959 GAAACCGCATTGTTCAGCTG 58.310 50.000 7.63 7.63 0.00 4.24
3225 3788 5.011023 CCAAAAAGAAACTACTTGCAGGGAT 59.989 40.000 0.00 0.00 0.00 3.85
3226 3789 5.712152 AAAAGAAACTACTTGCAGGGATG 57.288 39.130 0.00 0.00 0.00 3.51
3227 3790 2.716217 AGAAACTACTTGCAGGGATGC 58.284 47.619 0.00 0.00 0.00 3.91
3228 3791 2.040278 AGAAACTACTTGCAGGGATGCA 59.960 45.455 0.00 0.00 43.81 3.96
3249 3815 9.591792 GATGCAGATATAGATACATACTTTGCA 57.408 33.333 0.00 0.00 0.00 4.08
3333 3903 5.250200 TGGATTTGTACTTTTGCCTCGTAT 58.750 37.500 0.00 0.00 0.00 3.06
3335 3905 4.413495 TTTGTACTTTTGCCTCGTATGC 57.587 40.909 0.00 0.00 0.00 3.14
3409 3979 2.125229 CTGCAGCTCGTCAGGCAT 60.125 61.111 0.00 0.00 35.45 4.40
3545 4148 1.290009 GCTGCGCCTTTGGTGAATT 59.710 52.632 4.18 0.00 34.74 2.17
3590 4235 4.580580 ACCTGTGACCATTCAGTTCTTTTC 59.419 41.667 0.00 0.00 30.10 2.29
3625 4282 2.134789 CAAGGGACTGGGATTTCAGG 57.865 55.000 0.00 0.00 40.86 3.86
3655 4312 0.811616 ATGGCATCGCTCTCGTTTCC 60.812 55.000 0.00 0.00 36.96 3.13
3682 4339 7.657354 GCTGATGTGTTTGGTATGATGTATAGA 59.343 37.037 0.00 0.00 0.00 1.98
3683 4340 9.716531 CTGATGTGTTTGGTATGATGTATAGAT 57.283 33.333 0.00 0.00 0.00 1.98
3747 4404 2.816411 ACTAACTGGTAGCCTAGCACA 58.184 47.619 0.00 0.00 32.45 4.57
3751 4408 1.137086 ACTGGTAGCCTAGCACAATCG 59.863 52.381 0.00 0.00 32.06 3.34
3856 4566 6.127897 CCTTATCGAAAGTTCAGCCAAAAGAT 60.128 38.462 0.00 0.00 0.00 2.40
3857 4567 7.065803 CCTTATCGAAAGTTCAGCCAAAAGATA 59.934 37.037 0.00 0.00 0.00 1.98
3858 4568 6.817765 ATCGAAAGTTCAGCCAAAAGATAA 57.182 33.333 0.00 0.00 0.00 1.75
3859 4569 6.627395 TCGAAAGTTCAGCCAAAAGATAAA 57.373 33.333 0.00 0.00 0.00 1.40
3860 4570 6.435428 TCGAAAGTTCAGCCAAAAGATAAAC 58.565 36.000 0.00 0.00 0.00 2.01
3861 4571 6.262273 TCGAAAGTTCAGCCAAAAGATAAACT 59.738 34.615 0.00 0.00 0.00 2.66
3862 4572 6.918022 CGAAAGTTCAGCCAAAAGATAAACTT 59.082 34.615 0.00 0.00 40.98 2.66
3863 4573 7.113544 CGAAAGTTCAGCCAAAAGATAAACTTC 59.886 37.037 0.00 0.00 37.93 3.01
3864 4574 7.588497 AAGTTCAGCCAAAAGATAAACTTCT 57.412 32.000 0.00 0.00 37.93 2.85
3865 4575 7.588497 AGTTCAGCCAAAAGATAAACTTCTT 57.412 32.000 0.00 0.00 37.93 2.52
3866 4576 7.652727 AGTTCAGCCAAAAGATAAACTTCTTC 58.347 34.615 0.00 0.00 37.93 2.87
3867 4577 6.575162 TCAGCCAAAAGATAAACTTCTTCC 57.425 37.500 0.00 0.00 37.93 3.46
3868 4578 5.181245 TCAGCCAAAAGATAAACTTCTTCCG 59.819 40.000 0.00 0.00 37.93 4.30
3869 4579 5.181245 CAGCCAAAAGATAAACTTCTTCCGA 59.819 40.000 0.00 0.00 37.93 4.55
3870 4580 5.768164 AGCCAAAAGATAAACTTCTTCCGAA 59.232 36.000 0.00 0.00 37.93 4.30
3880 4590 3.724295 CTTCTTCCGAAGTTTTAGCCG 57.276 47.619 8.01 0.00 41.37 5.52
3881 4591 3.323243 CTTCTTCCGAAGTTTTAGCCGA 58.677 45.455 8.01 0.00 41.37 5.54
3882 4592 3.389925 TCTTCCGAAGTTTTAGCCGAA 57.610 42.857 8.01 0.00 0.00 4.30
3883 4593 3.062042 TCTTCCGAAGTTTTAGCCGAAC 58.938 45.455 8.01 0.00 0.00 3.95
3884 4594 1.799544 TCCGAAGTTTTAGCCGAACC 58.200 50.000 0.00 0.00 0.00 3.62
3938 4678 5.071788 AGTTTCCAGTACAAGATTCTCACCA 59.928 40.000 0.00 0.00 0.00 4.17
4061 4804 9.289782 GATGCTAAATCACCCAGAATTATTACT 57.710 33.333 0.00 0.00 0.00 2.24
4062 4805 8.677148 TGCTAAATCACCCAGAATTATTACTC 57.323 34.615 0.00 0.00 0.00 2.59
4063 4806 7.719633 TGCTAAATCACCCAGAATTATTACTCC 59.280 37.037 0.00 0.00 0.00 3.85
4078 4821 8.848474 ATTATTACTCCAAGATAAATCACCCG 57.152 34.615 0.00 0.00 0.00 5.28
4092 4835 9.821662 GATAAATCACCCGTAATTATTACAAGC 57.178 33.333 14.45 0.00 35.89 4.01
4132 4876 8.741603 ATGTTCATGATGATAAGTCACATGAA 57.258 30.769 19.97 19.97 46.25 2.57
4135 4879 7.255491 TCATGATGATAAGTCACATGAAAGC 57.745 36.000 0.00 0.00 42.73 3.51
4178 4923 8.552296 AGGATCTTGGTGTATCTCAAATAAGTT 58.448 33.333 0.00 0.00 0.00 2.66
4212 5643 5.395990 CCCAATGATGAATTTGGAAGAAGGG 60.396 44.000 3.32 0.00 33.67 3.95
4213 5644 5.395990 CCAATGATGAATTTGGAAGAAGGGG 60.396 44.000 0.00 0.00 0.00 4.79
4215 5646 5.009436 TGATGAATTTGGAAGAAGGGGAA 57.991 39.130 0.00 0.00 0.00 3.97
4221 5652 7.016296 TGAATTTGGAAGAAGGGGAACTAAAT 58.984 34.615 0.00 0.00 0.00 1.40
4241 5672 0.459585 TTCATAGTCTGAACCGCGGC 60.460 55.000 28.58 11.02 38.97 6.53
4243 5674 2.707849 ATAGTCTGAACCGCGGCGT 61.708 57.895 28.58 14.60 0.00 5.68
4244 5675 2.884087 ATAGTCTGAACCGCGGCGTG 62.884 60.000 28.58 14.53 0.00 5.34
4247 5678 4.368808 CTGAACCGCGGCGTGTTG 62.369 66.667 28.58 13.06 0.00 3.33
4257 5688 4.826600 GCGTGTTGCAGCTTGTAG 57.173 55.556 1.17 0.00 45.45 2.74
4258 5689 1.941812 GCGTGTTGCAGCTTGTAGT 59.058 52.632 1.17 0.00 45.45 2.73
4259 5690 0.307760 GCGTGTTGCAGCTTGTAGTT 59.692 50.000 1.17 0.00 45.45 2.24
4270 6057 3.361053 CAGCTTGTAGTTTGTCGTAGTCG 59.639 47.826 0.00 0.00 38.55 4.18
4271 6058 2.090195 GCTTGTAGTTTGTCGTAGTCGC 59.910 50.000 0.00 0.00 36.96 5.19
4486 6287 4.067512 TCCTCGCCTCCCTCTGCT 62.068 66.667 0.00 0.00 0.00 4.24
4494 6295 4.382541 TCCCTCTGCTCCGCTCCA 62.383 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.514063 ACTACTACAACTTTCCTCAGTTCAC 58.486 40.000 0.00 0.00 34.60 3.18
3 4 7.884257 ACTACTACTACAACTTTCCTCAGTTC 58.116 38.462 0.00 0.00 34.60 3.01
4 5 7.836479 ACTACTACTACAACTTTCCTCAGTT 57.164 36.000 0.00 0.00 37.49 3.16
5 6 8.930846 TTACTACTACTACAACTTTCCTCAGT 57.069 34.615 0.00 0.00 0.00 3.41
190 191 6.127814 CGAATTAGGTGTAGGAGTGTTAGACA 60.128 42.308 0.00 0.00 0.00 3.41
213 214 0.836400 AAAGACTGGAAGGAGGCCGA 60.836 55.000 0.00 0.00 39.30 5.54
237 238 1.879380 ACACAACCACATCATGAACGG 59.121 47.619 0.00 2.99 0.00 4.44
322 327 2.550830 AATCGCAGTGACTTGGTCTT 57.449 45.000 0.00 0.00 33.15 3.01
412 417 2.190313 CGCTTGGGCAGGATAGCA 59.810 61.111 0.00 0.00 38.60 3.49
574 579 3.574445 CCTCCGATCGACGAGCGT 61.574 66.667 30.45 1.44 45.77 5.07
664 669 1.404391 CCTTACGCCTCGTGTATCTGT 59.596 52.381 1.77 0.00 41.39 3.41
665 670 1.674441 TCCTTACGCCTCGTGTATCTG 59.326 52.381 1.77 0.00 41.39 2.90
666 671 2.048444 TCCTTACGCCTCGTGTATCT 57.952 50.000 1.77 0.00 41.39 1.98
667 672 2.098770 AGTTCCTTACGCCTCGTGTATC 59.901 50.000 1.77 0.00 41.39 2.24
668 673 2.097825 AGTTCCTTACGCCTCGTGTAT 58.902 47.619 1.77 0.00 41.39 2.29
669 674 1.470098 GAGTTCCTTACGCCTCGTGTA 59.530 52.381 1.77 0.00 41.39 2.90
670 675 0.243095 GAGTTCCTTACGCCTCGTGT 59.757 55.000 1.77 0.00 41.39 4.49
671 676 0.526662 AGAGTTCCTTACGCCTCGTG 59.473 55.000 1.77 0.00 41.39 4.35
720 725 0.250793 ACAATACACGGCCCGATCAA 59.749 50.000 11.71 0.00 0.00 2.57
802 807 7.710907 CGGAGTTTCAAAGGATCACTATGAATA 59.289 37.037 0.00 0.00 30.81 1.75
805 810 5.186992 TCGGAGTTTCAAAGGATCACTATGA 59.813 40.000 0.00 0.00 0.00 2.15
806 811 5.419542 TCGGAGTTTCAAAGGATCACTATG 58.580 41.667 0.00 0.00 0.00 2.23
807 812 5.677319 TCGGAGTTTCAAAGGATCACTAT 57.323 39.130 0.00 0.00 0.00 2.12
808 813 5.477607 TTCGGAGTTTCAAAGGATCACTA 57.522 39.130 0.00 0.00 0.00 2.74
812 817 5.220681 GCAGTATTCGGAGTTTCAAAGGATC 60.221 44.000 0.00 0.00 0.00 3.36
827 832 1.751351 TCACTCCAGAGGCAGTATTCG 59.249 52.381 0.00 0.00 0.00 3.34
849 861 0.645868 GATTGACTAGGTTGACGCGC 59.354 55.000 5.73 0.00 0.00 6.86
867 879 1.341482 TGGCCAACCAAGTCAAAGTGA 60.341 47.619 0.61 0.00 45.37 3.41
883 895 2.124736 TTAGCGCAGGTGATGGCC 60.125 61.111 11.47 0.00 40.22 5.36
887 899 1.165270 GGTTTGTTAGCGCAGGTGAT 58.835 50.000 11.47 0.00 40.22 3.06
899 911 0.185175 GGAGTGGAGTGGGGTTTGTT 59.815 55.000 0.00 0.00 0.00 2.83
902 914 1.072930 AGGGAGTGGAGTGGGGTTT 60.073 57.895 0.00 0.00 0.00 3.27
905 917 3.721706 GCAGGGAGTGGAGTGGGG 61.722 72.222 0.00 0.00 0.00 4.96
914 926 2.286523 CGTCAAGGGAGCAGGGAGT 61.287 63.158 0.00 0.00 0.00 3.85
927 948 2.992124 TCTTTGGTGGAGTTCGTCAA 57.008 45.000 0.00 0.00 0.00 3.18
928 949 2.992124 TTCTTTGGTGGAGTTCGTCA 57.008 45.000 0.00 0.00 0.00 4.35
1368 1393 3.109151 TCCACCCACTAATGTACCGAAT 58.891 45.455 0.00 0.00 0.00 3.34
1376 1401 3.470709 CAGCATACTCCACCCACTAATG 58.529 50.000 0.00 0.00 0.00 1.90
1407 1437 3.561310 AGATTCATACGCGCACAATCAAT 59.439 39.130 5.73 0.00 0.00 2.57
1530 1568 7.668052 ACCATAAAACTGTGCCTAACAAAGATA 59.332 33.333 0.00 0.00 38.67 1.98
1532 1570 5.830991 ACCATAAAACTGTGCCTAACAAAGA 59.169 36.000 0.00 0.00 38.67 2.52
1543 1581 5.463061 CCTTCTTGCAAACCATAAAACTGTG 59.537 40.000 0.00 0.00 0.00 3.66
1544 1582 5.128663 ACCTTCTTGCAAACCATAAAACTGT 59.871 36.000 0.00 0.00 0.00 3.55
1559 1597 3.942130 AGCCACAATTTACCTTCTTGC 57.058 42.857 0.00 0.00 0.00 4.01
1562 1600 4.740902 AGGAAAGCCACAATTTACCTTCT 58.259 39.130 0.00 0.00 36.29 2.85
1563 1601 5.710567 AGTAGGAAAGCCACAATTTACCTTC 59.289 40.000 0.00 0.00 36.29 3.46
1567 1605 5.699839 CACAGTAGGAAAGCCACAATTTAC 58.300 41.667 0.00 0.00 36.29 2.01
1570 1608 2.558359 GCACAGTAGGAAAGCCACAATT 59.442 45.455 0.00 0.00 36.29 2.32
1573 1611 0.250727 GGCACAGTAGGAAAGCCACA 60.251 55.000 0.00 0.00 44.59 4.17
1585 1623 3.762288 TCTCTTACTTGTATCGGCACAGT 59.238 43.478 0.00 0.00 0.00 3.55
1591 1629 3.491104 GCCCTGTCTCTTACTTGTATCGG 60.491 52.174 0.00 0.00 0.00 4.18
1592 1630 3.130516 TGCCCTGTCTCTTACTTGTATCG 59.869 47.826 0.00 0.00 0.00 2.92
1612 1650 9.175060 GTGAAAACTCTTCTCTTTCTTTAATGC 57.825 33.333 0.00 0.00 31.67 3.56
1649 1687 3.555139 GCTTGTGATACTGCTCAGCTTAG 59.445 47.826 0.00 0.00 0.00 2.18
1653 1691 2.021355 AGCTTGTGATACTGCTCAGC 57.979 50.000 0.00 0.00 0.00 4.26
1654 1692 4.498241 TGTAAGCTTGTGATACTGCTCAG 58.502 43.478 9.86 0.00 34.38 3.35
1655 1693 4.535526 TGTAAGCTTGTGATACTGCTCA 57.464 40.909 9.86 0.00 34.38 4.26
1656 1694 6.291849 CGTATTGTAAGCTTGTGATACTGCTC 60.292 42.308 9.86 0.00 34.38 4.26
1657 1695 5.520288 CGTATTGTAAGCTTGTGATACTGCT 59.480 40.000 9.86 0.00 37.37 4.24
1658 1696 5.518847 TCGTATTGTAAGCTTGTGATACTGC 59.481 40.000 9.86 0.00 0.00 4.40
1661 1699 7.694388 TCATCGTATTGTAAGCTTGTGATAC 57.306 36.000 9.86 12.33 0.00 2.24
1676 1714 7.285172 TCCCAACATTTCATCAATCATCGTATT 59.715 33.333 0.00 0.00 0.00 1.89
1715 1753 4.542662 ATGAAACGCTACAATCATCAGC 57.457 40.909 0.00 0.00 0.00 4.26
1722 1760 3.375299 GCTGGAGAATGAAACGCTACAAT 59.625 43.478 0.00 0.00 0.00 2.71
1766 1972 3.619929 ACGGACTTGCAAAATACGTATCC 59.380 43.478 16.85 2.27 0.00 2.59
1907 2139 7.256756 AGAAGAAGACTGAACACTCAATTTG 57.743 36.000 0.00 0.00 0.00 2.32
1924 2156 3.378112 TGACCTGCACAAACAAGAAGAAG 59.622 43.478 0.00 0.00 0.00 2.85
1932 2164 3.931468 CACAAATTTGACCTGCACAAACA 59.069 39.130 24.64 0.00 39.48 2.83
1933 2165 3.309410 CCACAAATTTGACCTGCACAAAC 59.691 43.478 24.64 0.00 39.48 2.93
1935 2167 2.499289 ACCACAAATTTGACCTGCACAA 59.501 40.909 24.64 0.00 0.00 3.33
2104 2336 5.624344 AGATTCTGCACAGTTGATTTCAG 57.376 39.130 0.00 0.00 0.00 3.02
2111 2343 5.179045 ACAAGAAAGATTCTGCACAGTTG 57.821 39.130 0.00 0.00 40.59 3.16
2138 2370 5.211174 ACCTCTTTGTACAGGAGTTACAC 57.789 43.478 19.53 0.00 33.52 2.90
2323 2586 6.300354 ACTTGCTTACATGTGTTTACACTC 57.700 37.500 9.11 0.00 46.55 3.51
2428 2704 4.290722 ACAGAACAGAAAGATGGGAGGAAT 59.709 41.667 0.00 0.00 0.00 3.01
2429 2705 3.652869 ACAGAACAGAAAGATGGGAGGAA 59.347 43.478 0.00 0.00 0.00 3.36
2626 3176 2.228103 CAGAAAAGCAGCAGATTGAGCA 59.772 45.455 0.00 0.00 0.00 4.26
2670 3226 6.816640 GTGATACACATAAGAAGTTGGCTGTA 59.183 38.462 0.00 0.00 34.08 2.74
2742 3298 1.696097 ATCTGGGCGTGGGTATGGTC 61.696 60.000 0.00 0.00 0.00 4.02
2976 3535 5.812127 CGATATGGATCATTCCGATTAGCAA 59.188 40.000 0.00 0.00 45.89 3.91
3034 3593 6.408206 GCTACCATACATACCTTCCAGAAGTT 60.408 42.308 6.65 0.00 36.72 2.66
3043 3602 4.157246 TCGATGGCTACCATACATACCTT 58.843 43.478 0.00 0.00 45.26 3.50
3062 3621 2.235402 GGAAAGTACTGGGACCAATCGA 59.765 50.000 0.00 0.00 0.00 3.59
3188 3751 8.850007 AGTTTCTTTTTGGAACTATCTAGACC 57.150 34.615 0.00 0.00 0.00 3.85
3225 3788 9.374838 CATGCAAAGTATGTATCTATATCTGCA 57.625 33.333 0.00 0.00 0.00 4.41
3226 3789 9.376075 ACATGCAAAGTATGTATCTATATCTGC 57.624 33.333 0.00 0.00 37.02 4.26
3249 3815 4.776837 TGAATAAATGGGCAGTTCCAACAT 59.223 37.500 0.00 0.00 40.62 2.71
3333 3903 2.216046 CAGCTCTGAAACACAAGAGCA 58.784 47.619 22.59 0.00 44.31 4.26
3335 3905 1.534595 GGCAGCTCTGAAACACAAGAG 59.465 52.381 0.29 0.00 0.00 2.85
3409 3979 1.827394 GCCTGGAGCGTACCCATAA 59.173 57.895 0.00 0.00 32.49 1.90
3488 4058 1.315257 GGCGGCCAGTTGTCATCATT 61.315 55.000 15.62 0.00 0.00 2.57
3535 4138 0.040514 CTGCGACGCAATTCACCAAA 60.041 50.000 24.51 0.00 38.41 3.28
3542 4145 3.356267 TGCAGCTGCGACGCAATT 61.356 55.556 32.11 11.86 45.83 2.32
3562 4165 2.290323 ACTGAATGGTCACAGGTAAGCC 60.290 50.000 0.00 0.00 38.30 4.35
3590 4235 2.121564 CTTGGTCAAGCACACCAGCG 62.122 60.000 0.00 0.00 44.89 5.18
3625 4282 1.729881 GATGCCATCTTTCACCGGC 59.270 57.895 0.00 0.00 45.11 6.13
3655 4312 3.374988 ACATCATACCAAACACATCAGCG 59.625 43.478 0.00 0.00 0.00 5.18
3682 4339 2.780714 GCAGCAGCTGAATCCATCTAT 58.219 47.619 27.39 0.00 37.91 1.98
3683 4340 2.251409 GCAGCAGCTGAATCCATCTA 57.749 50.000 27.39 0.00 37.91 1.98
3751 4408 0.524604 ACTTGCGCAAAACGGTCAAC 60.525 50.000 25.01 0.00 43.93 3.18
3862 4572 3.062042 GTTCGGCTAAAACTTCGGAAGA 58.938 45.455 23.74 0.80 39.20 2.87
3863 4573 2.159037 GGTTCGGCTAAAACTTCGGAAG 59.841 50.000 15.96 15.96 0.00 3.46
3864 4574 2.145536 GGTTCGGCTAAAACTTCGGAA 58.854 47.619 0.00 0.00 0.00 4.30
3865 4575 1.345415 AGGTTCGGCTAAAACTTCGGA 59.655 47.619 0.00 0.00 0.00 4.55
3866 4576 1.804601 AGGTTCGGCTAAAACTTCGG 58.195 50.000 0.00 0.00 0.00 4.30
3867 4577 4.033702 GGATTAGGTTCGGCTAAAACTTCG 59.966 45.833 0.00 0.00 0.00 3.79
3868 4578 5.183969 AGGATTAGGTTCGGCTAAAACTTC 58.816 41.667 0.00 0.00 0.00 3.01
3869 4579 5.175388 AGGATTAGGTTCGGCTAAAACTT 57.825 39.130 0.00 0.00 0.00 2.66
3870 4580 4.838904 AGGATTAGGTTCGGCTAAAACT 57.161 40.909 0.00 0.00 0.00 2.66
3871 4581 5.892160 AAAGGATTAGGTTCGGCTAAAAC 57.108 39.130 0.00 0.00 0.00 2.43
3872 4582 5.336134 GCAAAAGGATTAGGTTCGGCTAAAA 60.336 40.000 0.00 0.00 0.00 1.52
3873 4583 4.157105 GCAAAAGGATTAGGTTCGGCTAAA 59.843 41.667 0.00 0.00 0.00 1.85
3874 4584 3.692593 GCAAAAGGATTAGGTTCGGCTAA 59.307 43.478 0.00 0.00 0.00 3.09
3875 4585 3.054655 AGCAAAAGGATTAGGTTCGGCTA 60.055 43.478 0.00 0.00 0.00 3.93
3876 4586 2.092323 GCAAAAGGATTAGGTTCGGCT 58.908 47.619 0.00 0.00 0.00 5.52
3877 4587 2.092323 AGCAAAAGGATTAGGTTCGGC 58.908 47.619 0.00 0.00 0.00 5.54
3878 4588 3.343617 TGAGCAAAAGGATTAGGTTCGG 58.656 45.455 0.00 0.00 0.00 4.30
3879 4589 4.455877 AGTTGAGCAAAAGGATTAGGTTCG 59.544 41.667 0.00 0.00 0.00 3.95
3880 4590 5.473504 TCAGTTGAGCAAAAGGATTAGGTTC 59.526 40.000 0.00 0.00 0.00 3.62
3881 4591 5.385198 TCAGTTGAGCAAAAGGATTAGGTT 58.615 37.500 0.00 0.00 0.00 3.50
3882 4592 4.985538 TCAGTTGAGCAAAAGGATTAGGT 58.014 39.130 0.00 0.00 0.00 3.08
3883 4593 5.006386 ACTCAGTTGAGCAAAAGGATTAGG 58.994 41.667 8.99 0.00 45.79 2.69
3884 4594 5.702670 TCACTCAGTTGAGCAAAAGGATTAG 59.297 40.000 8.99 0.00 45.79 1.73
4132 4876 9.372189 AGATCCTATTTTAAATATGCAAGGCTT 57.628 29.630 0.00 0.00 0.00 4.35
4135 4879 9.918630 CCAAGATCCTATTTTAAATATGCAAGG 57.081 33.333 0.00 0.00 0.00 3.61
4178 4923 3.998913 TCATCATTGGGCAACTACTCA 57.001 42.857 0.00 0.00 0.00 3.41
4188 4933 5.395990 CCCTTCTTCCAAATTCATCATTGGG 60.396 44.000 4.83 0.00 44.99 4.12
4241 5672 2.223249 ACAAACTACAAGCTGCAACACG 60.223 45.455 1.02 0.00 0.00 4.49
4243 5674 2.031560 CGACAAACTACAAGCTGCAACA 59.968 45.455 1.02 0.00 0.00 3.33
4244 5675 2.031683 ACGACAAACTACAAGCTGCAAC 59.968 45.455 1.02 0.00 0.00 4.17
4245 5676 2.285083 ACGACAAACTACAAGCTGCAA 58.715 42.857 1.02 0.00 0.00 4.08
4247 5678 3.057734 ACTACGACAAACTACAAGCTGC 58.942 45.455 0.00 0.00 0.00 5.25
4249 5680 3.562505 CGACTACGACAAACTACAAGCT 58.437 45.455 0.00 0.00 42.66 3.74
4250 5681 2.090195 GCGACTACGACAAACTACAAGC 59.910 50.000 0.00 0.00 42.66 4.01
4251 5682 2.337644 CGCGACTACGACAAACTACAAG 59.662 50.000 0.00 0.00 42.66 3.16
4252 5683 2.032117 TCGCGACTACGACAAACTACAA 60.032 45.455 3.71 0.00 42.66 2.41
4253 5684 1.530720 TCGCGACTACGACAAACTACA 59.469 47.619 3.71 0.00 42.66 2.74
4254 5685 2.232239 TCGCGACTACGACAAACTAC 57.768 50.000 3.71 0.00 42.66 2.73
4255 5686 2.413239 CCTTCGCGACTACGACAAACTA 60.413 50.000 9.15 0.00 42.78 2.24
4257 5688 0.706729 CCTTCGCGACTACGACAAAC 59.293 55.000 9.15 0.00 42.78 2.93
4258 5689 0.311790 ACCTTCGCGACTACGACAAA 59.688 50.000 9.15 0.00 42.78 2.83
4259 5690 0.311790 AACCTTCGCGACTACGACAA 59.688 50.000 9.15 0.00 42.78 3.18
4270 6057 1.206115 CGTTGTGCCAAAACCTTCGC 61.206 55.000 0.00 0.00 0.00 4.70
4271 6058 0.378962 TCGTTGTGCCAAAACCTTCG 59.621 50.000 0.00 0.00 0.00 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.