Multiple sequence alignment - TraesCS5D01G496600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G496600 chr5D 100.000 5022 0 0 1 5022 527157823 527152802 0.000000e+00 9274
1 TraesCS5D01G496600 chr5B 94.116 3263 128 34 32 3252 663229846 663226606 0.000000e+00 4903
2 TraesCS5D01G496600 chr5B 94.488 762 34 5 3503 4256 663226329 663225568 0.000000e+00 1168
3 TraesCS5D01G496600 chr5B 92.703 370 15 4 4662 5022 663225316 663224950 1.600000e-144 523
4 TraesCS5D01G496600 chr5B 97.403 231 6 0 3275 3505 663226615 663226385 1.310000e-105 394
5 TraesCS5D01G496600 chr5B 92.920 226 15 1 4381 4605 663225541 663225316 1.350000e-85 327
6 TraesCS5D01G496600 chr5A 93.814 2522 131 13 1523 4037 654168611 654166108 0.000000e+00 3770
7 TraesCS5D01G496600 chr5A 91.496 1811 96 21 478 2264 654157932 654156156 0.000000e+00 2438
8 TraesCS5D01G496600 chr5A 93.100 1058 55 3 2249 3289 654156136 654155080 0.000000e+00 1533
9 TraesCS5D01G496600 chr5A 96.794 811 23 2 730 1539 654169470 654168662 0.000000e+00 1351
10 TraesCS5D01G496600 chr5A 88.476 1050 86 8 3258 4278 654155054 654154011 0.000000e+00 1236
11 TraesCS5D01G496600 chr5A 91.864 762 27 11 1 729 654170308 654169549 0.000000e+00 1031
12 TraesCS5D01G496600 chr5A 88.563 647 42 15 4381 5022 654154012 654153393 0.000000e+00 756
13 TraesCS5D01G496600 chr5A 83.889 360 45 9 4 355 654159300 654158946 1.040000e-86 331
14 TraesCS5D01G496600 chr5A 90.244 123 8 4 4267 4387 36493576 36493456 1.870000e-34 158
15 TraesCS5D01G496600 chr2B 79.293 1613 246 54 644 2217 781540208 781538645 0.000000e+00 1048
16 TraesCS5D01G496600 chr2B 82.977 1169 170 19 2836 4001 781579863 781578721 0.000000e+00 1029
17 TraesCS5D01G496600 chr2B 82.918 843 110 23 730 1556 781582070 781581246 0.000000e+00 728
18 TraesCS5D01G496600 chr2B 83.171 719 97 18 2823 3532 781537326 781536623 1.970000e-178 636
19 TraesCS5D01G496600 chr2A 82.576 1188 169 24 2836 4001 775976057 775974886 0.000000e+00 1013
20 TraesCS5D01G496600 chr2A 78.481 1501 227 65 755 2223 775939864 775938428 0.000000e+00 894
21 TraesCS5D01G496600 chr2A 80.417 1200 174 32 2827 4001 775942010 775940847 0.000000e+00 857
22 TraesCS5D01G496600 chr2A 78.754 1445 187 62 730 2131 775978139 775976772 0.000000e+00 857
23 TraesCS5D01G496600 chr2A 82.313 441 68 7 3563 4001 775936874 775936442 1.710000e-99 374
24 TraesCS5D01G496600 chr2A 93.805 113 5 2 4277 4387 640305323 640305211 8.650000e-38 169
25 TraesCS5D01G496600 chr2D 82.477 1187 169 20 2836 4001 651698733 651699901 0.000000e+00 1003
26 TraesCS5D01G496600 chr2D 79.404 1442 186 63 730 2131 651696650 651698020 0.000000e+00 915
27 TraesCS5D01G496600 chr2D 82.436 780 112 15 644 1415 651720945 651721707 0.000000e+00 658
28 TraesCS5D01G496600 chr2D 83.263 711 81 21 2823 3532 651724017 651724690 1.990000e-173 619
29 TraesCS5D01G496600 chr2D 76.420 704 113 33 1519 2204 651722046 651722714 1.040000e-86 331
30 TraesCS5D01G496600 chr2D 81.044 364 47 9 3639 4001 651719712 651720054 2.300000e-68 270
31 TraesCS5D01G496600 chr2D 91.667 120 7 3 4270 4387 418072104 418071986 4.020000e-36 163
32 TraesCS5D01G496600 chr6D 92.500 120 6 2 4265 4382 68900019 68899901 8.650000e-38 169
33 TraesCS5D01G496600 chr7D 93.043 115 6 2 4275 4387 144501271 144501157 3.110000e-37 167
34 TraesCS5D01G496600 chr3A 94.495 109 4 2 4277 4383 91478336 91478228 3.110000e-37 167
35 TraesCS5D01G496600 chr7A 94.444 108 4 2 4274 4379 538102525 538102632 1.120000e-36 165
36 TraesCS5D01G496600 chr3D 92.920 113 6 1 4272 4382 55745088 55744976 4.020000e-36 163
37 TraesCS5D01G496600 chr1A 92.982 114 5 3 4267 4378 313736224 313736112 4.020000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G496600 chr5D 527152802 527157823 5021 True 9274.000000 9274 100.000000 1 5022 1 chr5D.!!$R1 5021
1 TraesCS5D01G496600 chr5B 663224950 663229846 4896 True 1463.000000 4903 94.326000 32 5022 5 chr5B.!!$R1 4990
2 TraesCS5D01G496600 chr5A 654166108 654170308 4200 True 2050.666667 3770 94.157333 1 4037 3 chr5A.!!$R3 4036
3 TraesCS5D01G496600 chr5A 654153393 654159300 5907 True 1258.800000 2438 89.104800 4 5022 5 chr5A.!!$R2 5018
4 TraesCS5D01G496600 chr2B 781578721 781582070 3349 True 878.500000 1029 82.947500 730 4001 2 chr2B.!!$R2 3271
5 TraesCS5D01G496600 chr2B 781536623 781540208 3585 True 842.000000 1048 81.232000 644 3532 2 chr2B.!!$R1 2888
6 TraesCS5D01G496600 chr2A 775974886 775978139 3253 True 935.000000 1013 80.665000 730 4001 2 chr2A.!!$R3 3271
7 TraesCS5D01G496600 chr2A 775936442 775942010 5568 True 708.333333 894 80.403667 755 4001 3 chr2A.!!$R2 3246
8 TraesCS5D01G496600 chr2D 651696650 651699901 3251 False 959.000000 1003 80.940500 730 4001 2 chr2D.!!$F1 3271
9 TraesCS5D01G496600 chr2D 651719712 651724690 4978 False 469.500000 658 80.790750 644 4001 4 chr2D.!!$F2 3357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 2325 2.213499 GTGTCCTGACAGTGAAGGTTG 58.787 52.381 13.89 0.0 42.74 3.77 F
1448 2857 2.389962 TTAGCGTGGAATGGGTGTAC 57.610 50.000 0.00 0.0 0.00 2.90 F
3063 5938 2.003658 CTTTGTGCCGCTGGTGTTGT 62.004 55.000 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 3819 2.497273 GACACCCTGGGGAAATGAAATG 59.503 50.000 18.88 5.14 38.96 2.32 R
3190 6065 0.435008 GAGCAAACAGTACAGTCGCG 59.565 55.000 0.00 0.00 0.00 5.87 R
4053 7275 1.065551 CAGCCGCCTAATAACAAAGCC 59.934 52.381 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 163 7.730364 TTTTCTTGTAGAGAATGTCCTGAAC 57.270 36.000 0.00 0.00 43.65 3.18
187 198 5.925969 CACAAAGTTGGACATATTGAAACCC 59.074 40.000 0.00 0.00 0.00 4.11
476 1120 6.533730 TCATGTAATTCTTGACACCTTGACT 58.466 36.000 0.00 0.00 0.00 3.41
714 1642 7.138736 GTGTCTTGCACAGTGTAATATTTTGT 58.861 34.615 4.36 0.00 46.91 2.83
724 1737 7.378461 ACAGTGTAATATTTTGTTGTTGCGAAG 59.622 33.333 0.00 0.00 0.00 3.79
725 1738 7.378461 CAGTGTAATATTTTGTTGTTGCGAAGT 59.622 33.333 0.00 0.00 0.00 3.01
726 1739 8.561212 AGTGTAATATTTTGTTGTTGCGAAGTA 58.439 29.630 0.00 0.00 0.00 2.24
728 1741 8.561212 TGTAATATTTTGTTGTTGCGAAGTACT 58.439 29.630 0.00 0.00 0.00 2.73
808 2202 4.034510 CCTTGATTAAAGCAAGCGACTAGG 59.965 45.833 13.22 0.00 41.00 3.02
887 2282 5.152623 TGAGTCCTATCTGAACAAACCTG 57.847 43.478 0.00 0.00 0.00 4.00
896 2291 2.880268 CTGAACAAACCTGATGACAGCA 59.120 45.455 0.00 0.00 42.25 4.41
930 2325 2.213499 GTGTCCTGACAGTGAAGGTTG 58.787 52.381 13.89 0.00 42.74 3.77
1448 2857 2.389962 TTAGCGTGGAATGGGTGTAC 57.610 50.000 0.00 0.00 0.00 2.90
1488 3129 6.809196 GTGACTTGGAGTTGTTAGACATCTAG 59.191 42.308 0.00 0.00 29.00 2.43
1693 3494 6.128526 CCTTTCCGACAGAGAATTTCAGTTAC 60.129 42.308 0.00 0.00 0.00 2.50
1746 3575 4.878397 CCTCTTTGTGGGAAAGTAGCTATG 59.122 45.833 0.00 0.00 0.00 2.23
1833 3662 7.790823 AGTTATTGTGTAAAAACGTACCAGT 57.209 32.000 0.00 0.00 0.00 4.00
1835 3664 8.676401 AGTTATTGTGTAAAAACGTACCAGTTT 58.324 29.630 0.00 0.00 45.21 2.66
1874 3704 6.569801 GCTTACAACTGAACCTTGGTATTTCC 60.570 42.308 0.00 0.00 0.00 3.13
2223 4243 8.975410 TTTGTATTTCGGATATCCATACGTAG 57.025 34.615 21.70 3.51 39.66 3.51
2387 4754 6.372659 TCTTCATGTTAAGATCACAGGAAAGC 59.627 38.462 11.40 0.00 42.59 3.51
2393 4760 7.147312 TGTTAAGATCACAGGAAAGCAAAATG 58.853 34.615 0.00 0.00 0.00 2.32
2493 4867 5.301805 TCAATAGCAAGATCATCGTAGACCA 59.698 40.000 0.00 0.00 42.51 4.02
2646 5088 3.650942 AGACAAAGGGTGGAGATAACACA 59.349 43.478 0.00 0.00 40.54 3.72
2966 5841 2.166459 TCCGTGGATCAGTGAGTGATTC 59.834 50.000 3.99 2.67 46.64 2.52
3063 5938 2.003658 CTTTGTGCCGCTGGTGTTGT 62.004 55.000 0.00 0.00 0.00 3.32
3082 5957 3.405831 TGTCGTACTAGCGCTATACCAT 58.594 45.455 19.19 4.18 0.00 3.55
3109 5984 4.204799 CTCAGCTCAAATCCATCATCCAA 58.795 43.478 0.00 0.00 0.00 3.53
3164 6039 2.119655 CATGCCTCAAGGAGCTGGC 61.120 63.158 3.59 3.59 45.10 4.85
3190 6065 2.158971 GGGAATTCTCCTGCAGTCTCTC 60.159 54.545 13.81 1.33 42.05 3.20
3253 6128 3.287121 CTTGCTCTGTGCGCACGTC 62.287 63.158 33.22 21.68 46.63 4.34
3254 6129 3.790334 TTGCTCTGTGCGCACGTCT 62.790 57.895 33.22 0.00 46.63 4.18
3276 6151 2.093181 AGGTGTGTATGTGTGTGTGTGT 60.093 45.455 0.00 0.00 0.00 3.72
3279 6154 1.668237 GTGTATGTGTGTGTGTGTGCA 59.332 47.619 0.00 0.00 0.00 4.57
3295 6257 1.020437 TGCACGCACATGTTCAGAAA 58.980 45.000 0.00 0.00 0.00 2.52
3528 6549 2.026449 AGAATCCCCTCAACAGAAGCAG 60.026 50.000 0.00 0.00 0.00 4.24
3943 7140 1.459592 GAAGCAAATGCAGCAAGCTTG 59.540 47.619 27.72 22.44 44.73 4.01
3969 7166 1.227853 AGGAACAAGAAAGCGGCGT 60.228 52.632 9.37 0.00 0.00 5.68
4001 7198 1.560923 AACGCGAGATTCGATCAAGG 58.439 50.000 15.93 0.00 43.74 3.61
4018 7215 1.280457 AGGGGTGCGAAAGAGAAGAT 58.720 50.000 0.00 0.00 0.00 2.40
4025 7247 5.178438 GGGTGCGAAAGAGAAGATTGATATC 59.822 44.000 0.00 0.00 0.00 1.63
4053 7275 2.350580 GCTTTGAAACTCTGAGCAGCAG 60.351 50.000 4.19 0.53 46.31 4.24
4197 7422 6.095432 ACATAGGCAGAGATACATGAACTC 57.905 41.667 0.00 5.13 0.00 3.01
4200 7425 5.426689 AGGCAGAGATACATGAACTCAAA 57.573 39.130 0.00 0.00 33.69 2.69
4215 7440 9.166173 CATGAACTCAAACTAATATCCACTTCA 57.834 33.333 0.00 0.00 0.00 3.02
4261 7492 4.487714 TCTAGCTTAAGGTTCATGGGTG 57.512 45.455 13.21 0.00 0.00 4.61
4262 7493 2.514458 AGCTTAAGGTTCATGGGTGG 57.486 50.000 0.12 0.00 0.00 4.61
4276 7507 5.646215 TCATGGGTGGGTTAAATTTGTACT 58.354 37.500 0.00 0.00 0.00 2.73
4277 7508 6.791371 TCATGGGTGGGTTAAATTTGTACTA 58.209 36.000 0.00 0.00 0.00 1.82
4278 7509 6.660094 TCATGGGTGGGTTAAATTTGTACTAC 59.340 38.462 0.00 0.00 0.00 2.73
4279 7510 6.203526 TGGGTGGGTTAAATTTGTACTACT 57.796 37.500 0.00 0.00 0.00 2.57
4280 7511 6.240145 TGGGTGGGTTAAATTTGTACTACTC 58.760 40.000 0.00 0.00 0.00 2.59
4281 7512 5.649395 GGGTGGGTTAAATTTGTACTACTCC 59.351 44.000 0.00 6.90 0.00 3.85
4282 7513 5.649395 GGTGGGTTAAATTTGTACTACTCCC 59.351 44.000 0.00 0.00 0.00 4.30
4283 7514 6.479006 GTGGGTTAAATTTGTACTACTCCCT 58.521 40.000 0.00 0.00 33.15 4.20
4284 7515 6.596888 GTGGGTTAAATTTGTACTACTCCCTC 59.403 42.308 0.00 0.00 33.15 4.30
4285 7516 6.502863 TGGGTTAAATTTGTACTACTCCCTCT 59.497 38.462 0.00 0.00 33.15 3.69
4286 7517 7.017850 TGGGTTAAATTTGTACTACTCCCTCTT 59.982 37.037 0.00 0.00 33.15 2.85
4287 7518 7.551974 GGGTTAAATTTGTACTACTCCCTCTTC 59.448 40.741 0.00 0.00 0.00 2.87
4288 7519 8.098912 GGTTAAATTTGTACTACTCCCTCTTCA 58.901 37.037 0.00 0.00 0.00 3.02
4289 7520 8.933807 GTTAAATTTGTACTACTCCCTCTTCAC 58.066 37.037 0.00 0.00 0.00 3.18
4290 7521 6.936968 AATTTGTACTACTCCCTCTTCACT 57.063 37.500 0.00 0.00 0.00 3.41
4291 7522 6.936968 ATTTGTACTACTCCCTCTTCACTT 57.063 37.500 0.00 0.00 0.00 3.16
4292 7523 6.742559 TTTGTACTACTCCCTCTTCACTTT 57.257 37.500 0.00 0.00 0.00 2.66
4293 7524 6.742559 TTGTACTACTCCCTCTTCACTTTT 57.257 37.500 0.00 0.00 0.00 2.27
4294 7525 6.097915 TGTACTACTCCCTCTTCACTTTTG 57.902 41.667 0.00 0.00 0.00 2.44
4295 7526 4.009370 ACTACTCCCTCTTCACTTTTGC 57.991 45.455 0.00 0.00 0.00 3.68
4296 7527 3.391296 ACTACTCCCTCTTCACTTTTGCA 59.609 43.478 0.00 0.00 0.00 4.08
4297 7528 3.297134 ACTCCCTCTTCACTTTTGCAA 57.703 42.857 0.00 0.00 0.00 4.08
4298 7529 3.217626 ACTCCCTCTTCACTTTTGCAAG 58.782 45.455 0.00 0.00 35.92 4.01
4299 7530 3.117888 ACTCCCTCTTCACTTTTGCAAGA 60.118 43.478 0.00 0.00 33.72 3.02
4300 7531 3.214328 TCCCTCTTCACTTTTGCAAGAC 58.786 45.455 0.00 0.00 33.72 3.01
4301 7532 2.294512 CCCTCTTCACTTTTGCAAGACC 59.705 50.000 0.00 0.00 33.72 3.85
4302 7533 3.217626 CCTCTTCACTTTTGCAAGACCT 58.782 45.455 0.00 0.00 33.72 3.85
4303 7534 3.633986 CCTCTTCACTTTTGCAAGACCTT 59.366 43.478 0.00 0.00 33.72 3.50
4304 7535 4.098501 CCTCTTCACTTTTGCAAGACCTTT 59.901 41.667 0.00 0.00 33.72 3.11
4305 7536 5.394553 CCTCTTCACTTTTGCAAGACCTTTT 60.395 40.000 0.00 0.00 33.72 2.27
4306 7537 6.183360 CCTCTTCACTTTTGCAAGACCTTTTA 60.183 38.462 0.00 0.00 33.72 1.52
4307 7538 6.795399 TCTTCACTTTTGCAAGACCTTTTAG 58.205 36.000 0.00 0.00 33.72 1.85
4308 7539 6.601613 TCTTCACTTTTGCAAGACCTTTTAGA 59.398 34.615 0.00 0.00 33.72 2.10
4309 7540 6.131544 TCACTTTTGCAAGACCTTTTAGAC 57.868 37.500 0.00 0.00 33.72 2.59
4310 7541 5.650266 TCACTTTTGCAAGACCTTTTAGACA 59.350 36.000 0.00 0.00 33.72 3.41
4311 7542 6.321181 TCACTTTTGCAAGACCTTTTAGACAT 59.679 34.615 0.00 0.00 33.72 3.06
4312 7543 6.980397 CACTTTTGCAAGACCTTTTAGACATT 59.020 34.615 0.00 0.00 33.72 2.71
4313 7544 7.492344 CACTTTTGCAAGACCTTTTAGACATTT 59.508 33.333 0.00 0.00 33.72 2.32
4314 7545 8.691797 ACTTTTGCAAGACCTTTTAGACATTTA 58.308 29.630 0.00 0.00 33.72 1.40
4315 7546 9.528018 CTTTTGCAAGACCTTTTAGACATTTAA 57.472 29.630 0.00 0.00 30.57 1.52
4316 7547 9.528018 TTTTGCAAGACCTTTTAGACATTTAAG 57.472 29.630 0.00 0.00 0.00 1.85
4317 7548 8.458573 TTGCAAGACCTTTTAGACATTTAAGA 57.541 30.769 0.00 0.00 0.00 2.10
4318 7549 7.871853 TGCAAGACCTTTTAGACATTTAAGAC 58.128 34.615 0.00 0.00 0.00 3.01
4319 7550 7.500892 TGCAAGACCTTTTAGACATTTAAGACA 59.499 33.333 0.00 0.00 0.00 3.41
4320 7551 8.349983 GCAAGACCTTTTAGACATTTAAGACAA 58.650 33.333 0.00 0.00 0.00 3.18
4321 7552 9.665264 CAAGACCTTTTAGACATTTAAGACAAC 57.335 33.333 0.00 0.00 0.00 3.32
4322 7553 8.974060 AGACCTTTTAGACATTTAAGACAACA 57.026 30.769 0.00 0.00 0.00 3.33
4323 7554 8.837389 AGACCTTTTAGACATTTAAGACAACAC 58.163 33.333 0.00 0.00 0.00 3.32
4324 7555 7.937649 ACCTTTTAGACATTTAAGACAACACC 58.062 34.615 0.00 0.00 0.00 4.16
4325 7556 7.778382 ACCTTTTAGACATTTAAGACAACACCT 59.222 33.333 0.00 0.00 0.00 4.00
4326 7557 9.280174 CCTTTTAGACATTTAAGACAACACCTA 57.720 33.333 0.00 0.00 0.00 3.08
4331 7562 8.514330 AGACATTTAAGACAACACCTAAAACA 57.486 30.769 0.00 0.00 0.00 2.83
4332 7563 8.621286 AGACATTTAAGACAACACCTAAAACAG 58.379 33.333 0.00 0.00 0.00 3.16
4333 7564 8.288689 ACATTTAAGACAACACCTAAAACAGT 57.711 30.769 0.00 0.00 0.00 3.55
4334 7565 8.745590 ACATTTAAGACAACACCTAAAACAGTT 58.254 29.630 0.00 0.00 0.00 3.16
4335 7566 9.233232 CATTTAAGACAACACCTAAAACAGTTC 57.767 33.333 0.00 0.00 0.00 3.01
4336 7567 7.925043 TTAAGACAACACCTAAAACAGTTCA 57.075 32.000 0.00 0.00 0.00 3.18
4337 7568 6.827586 AAGACAACACCTAAAACAGTTCAA 57.172 33.333 0.00 0.00 0.00 2.69
4338 7569 7.404671 AAGACAACACCTAAAACAGTTCAAT 57.595 32.000 0.00 0.00 0.00 2.57
4339 7570 7.404671 AGACAACACCTAAAACAGTTCAATT 57.595 32.000 0.00 0.00 0.00 2.32
4340 7571 7.836842 AGACAACACCTAAAACAGTTCAATTT 58.163 30.769 0.00 0.00 0.00 1.82
4341 7572 7.973944 AGACAACACCTAAAACAGTTCAATTTC 59.026 33.333 0.00 0.00 0.00 2.17
4342 7573 7.607250 ACAACACCTAAAACAGTTCAATTTCA 58.393 30.769 0.00 0.00 0.00 2.69
4343 7574 8.091449 ACAACACCTAAAACAGTTCAATTTCAA 58.909 29.630 0.00 0.00 0.00 2.69
4344 7575 8.379902 CAACACCTAAAACAGTTCAATTTCAAC 58.620 33.333 0.00 0.00 0.00 3.18
4345 7576 7.836842 ACACCTAAAACAGTTCAATTTCAACT 58.163 30.769 0.00 0.00 34.24 3.16
4354 7585 7.914537 CAGTTCAATTTCAACTGTCCTAAAC 57.085 36.000 14.99 0.00 43.92 2.01
4355 7586 6.632834 CAGTTCAATTTCAACTGTCCTAAACG 59.367 38.462 14.99 0.00 43.92 3.60
4356 7587 6.540914 AGTTCAATTTCAACTGTCCTAAACGA 59.459 34.615 0.00 0.00 32.65 3.85
4357 7588 6.295039 TCAATTTCAACTGTCCTAAACGAC 57.705 37.500 0.00 0.00 0.00 4.34
4358 7589 6.053005 TCAATTTCAACTGTCCTAAACGACT 58.947 36.000 0.00 0.00 33.70 4.18
4359 7590 6.540914 TCAATTTCAACTGTCCTAAACGACTT 59.459 34.615 0.00 0.00 33.70 3.01
4360 7591 7.711772 TCAATTTCAACTGTCCTAAACGACTTA 59.288 33.333 0.00 0.00 33.70 2.24
4361 7592 6.833342 TTTCAACTGTCCTAAACGACTTAC 57.167 37.500 0.00 0.00 33.70 2.34
4362 7593 5.518848 TCAACTGTCCTAAACGACTTACA 57.481 39.130 0.00 0.00 33.70 2.41
4363 7594 5.904941 TCAACTGTCCTAAACGACTTACAA 58.095 37.500 0.00 0.00 33.70 2.41
4364 7595 6.339730 TCAACTGTCCTAAACGACTTACAAA 58.660 36.000 0.00 0.00 33.70 2.83
4365 7596 6.817641 TCAACTGTCCTAAACGACTTACAAAA 59.182 34.615 0.00 0.00 33.70 2.44
4366 7597 6.839820 ACTGTCCTAAACGACTTACAAAAG 57.160 37.500 0.00 0.00 38.77 2.27
4368 7599 6.257193 ACTGTCCTAAACGACTTACAAAAGTG 59.743 38.462 0.00 0.00 46.09 3.16
4369 7600 6.339730 TGTCCTAAACGACTTACAAAAGTGA 58.660 36.000 0.00 0.00 46.09 3.41
4370 7601 6.817641 TGTCCTAAACGACTTACAAAAGTGAA 59.182 34.615 0.00 0.00 46.09 3.18
4371 7602 7.121911 GTCCTAAACGACTTACAAAAGTGAAC 58.878 38.462 0.00 0.00 46.09 3.18
4372 7603 6.817641 TCCTAAACGACTTACAAAAGTGAACA 59.182 34.615 0.00 0.00 46.09 3.18
4373 7604 7.010738 TCCTAAACGACTTACAAAAGTGAACAG 59.989 37.037 0.00 0.00 46.09 3.16
4374 7605 6.730960 AAACGACTTACAAAAGTGAACAGA 57.269 33.333 0.00 0.00 46.09 3.41
4375 7606 5.968387 ACGACTTACAAAAGTGAACAGAG 57.032 39.130 0.00 0.00 46.09 3.35
4376 7607 4.809426 ACGACTTACAAAAGTGAACAGAGG 59.191 41.667 0.00 0.00 46.09 3.69
4377 7608 4.211374 CGACTTACAAAAGTGAACAGAGGG 59.789 45.833 0.00 0.00 46.09 4.30
4378 7609 5.365619 GACTTACAAAAGTGAACAGAGGGA 58.634 41.667 0.00 0.00 46.09 4.20
4379 7610 5.941788 ACTTACAAAAGTGAACAGAGGGAT 58.058 37.500 0.00 0.00 44.40 3.85
4386 7617 5.957771 AAGTGAACAGAGGGATTAGCATA 57.042 39.130 0.00 0.00 0.00 3.14
4412 7643 5.539048 GCTTTAGCGGATCTTAGTGGAATA 58.461 41.667 0.00 0.00 0.00 1.75
4455 7686 1.737838 TCACGACAATCCATGCTTCC 58.262 50.000 0.00 0.00 0.00 3.46
4556 7792 5.574082 CACAAGTTTACACATCCAACGAAA 58.426 37.500 0.00 0.00 0.00 3.46
4557 7793 5.454232 CACAAGTTTACACATCCAACGAAAC 59.546 40.000 0.00 0.00 0.00 2.78
4624 7860 8.373048 CTTGTTTAAGGATTTTTAAACCCCAC 57.627 34.615 15.00 0.00 45.94 4.61
4633 7869 6.317642 GGATTTTTAAACCCCACCATAATTGC 59.682 38.462 0.00 0.00 0.00 3.56
4638 7874 3.697190 ACCCCACCATAATTGCCATTA 57.303 42.857 0.00 0.00 0.00 1.90
4650 7886 7.225145 CCATAATTGCCATTAATTGACTGTTGG 59.775 37.037 0.00 0.00 32.79 3.77
4680 7916 1.909700 TCCCATGGAACTGAAGTTGC 58.090 50.000 15.22 7.67 45.04 4.17
4847 8084 7.337689 AGAAATGAGTGTAAATTATGCTCTGCA 59.662 33.333 0.00 0.00 44.86 4.41
4879 8116 6.993308 TCGCTTGCCCACATAGTATATTTTTA 59.007 34.615 0.00 0.00 0.00 1.52
4904 8142 6.600032 AGTTTTATGTTATCATACAACCCGCA 59.400 34.615 14.81 0.00 42.97 5.69
4915 8153 1.349688 ACAACCCGCATTCAGTTAGGA 59.650 47.619 0.00 0.00 0.00 2.94
4985 8231 3.731652 TGCCTCAATGAAACACCAAAG 57.268 42.857 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 141 3.614616 GCGTTCAGGACATTCTCTACAAG 59.385 47.826 0.00 0.00 0.00 3.16
152 163 2.096069 CCAACTTTGTGACTCAGATGCG 60.096 50.000 0.00 0.00 0.00 4.73
351 366 4.939509 ATTGTGACGGGAATCTTTAACG 57.060 40.909 0.00 0.00 0.00 3.18
707 1635 6.366315 ACAGTACTTCGCAACAACAAAATA 57.634 33.333 0.00 0.00 0.00 1.40
714 1642 5.294356 ACATCTTACAGTACTTCGCAACAA 58.706 37.500 0.00 0.00 0.00 2.83
726 1739 9.569122 ACAAGTTAATTGGTTACATCTTACAGT 57.431 29.630 0.00 0.00 43.68 3.55
887 2282 4.380233 CCTCATCAAACCTTTGCTGTCATC 60.380 45.833 2.47 0.00 36.14 2.92
896 2291 3.138283 TCAGGACACCTCATCAAACCTTT 59.862 43.478 0.00 0.00 0.00 3.11
930 2325 1.227263 CCATCGGGACACGTCATCC 60.227 63.158 6.81 6.81 44.69 3.51
1433 2842 2.279741 CATGAGTACACCCATTCCACG 58.720 52.381 0.00 0.00 0.00 4.94
1434 2843 3.009723 CACATGAGTACACCCATTCCAC 58.990 50.000 0.00 0.00 0.00 4.02
1448 2857 4.155462 CCAAGTCACAATTCCTCACATGAG 59.845 45.833 0.00 1.63 41.71 2.90
1488 3129 7.376072 GCAGAATGAAACAATTACGGTATTAGC 59.624 37.037 0.00 0.00 39.69 3.09
1954 3819 2.497273 GACACCCTGGGGAAATGAAATG 59.503 50.000 18.88 5.14 38.96 2.32
2142 4007 5.799827 TTTAATTGTCACAAGGGGGAAAG 57.200 39.130 0.00 0.00 0.00 2.62
2146 4011 8.779303 GTTTAAAATTTAATTGTCACAAGGGGG 58.221 33.333 0.00 0.00 0.00 5.40
2147 4012 9.331282 TGTTTAAAATTTAATTGTCACAAGGGG 57.669 29.630 0.00 0.00 0.00 4.79
2207 4227 5.634896 GTGTTACCTACGTATGGATATCCG 58.365 45.833 17.04 7.36 39.43 4.18
2259 4339 8.593492 TGATTCTCATAATCAGACGTTTATGG 57.407 34.615 14.59 8.11 36.26 2.74
2387 4754 6.748132 TTCCTAGAGCAAAAGGAACATTTTG 58.252 36.000 16.67 16.67 44.96 2.44
2493 4867 3.201487 GGCTAGGTTGGGTTTGGTAGTAT 59.799 47.826 0.00 0.00 0.00 2.12
2560 4934 2.838813 GACTAGCCCCCTACAGTTTTCT 59.161 50.000 0.00 0.00 0.00 2.52
3063 5938 2.745821 CCATGGTATAGCGCTAGTACGA 59.254 50.000 23.37 19.53 34.06 3.43
3082 5957 1.361204 TGGATTTGAGCTGAGGTCCA 58.639 50.000 9.40 4.83 33.63 4.02
3109 5984 2.291282 TGTGTGGTGAAAAAGAGGGTGT 60.291 45.455 0.00 0.00 0.00 4.16
3164 6039 4.133078 GACTGCAGGAGAATTCCCAATAG 58.867 47.826 19.93 10.29 45.24 1.73
3190 6065 0.435008 GAGCAAACAGTACAGTCGCG 59.565 55.000 0.00 0.00 0.00 5.87
3253 6128 3.740832 CACACACACACATACACACCTAG 59.259 47.826 0.00 0.00 0.00 3.02
3254 6129 3.133183 ACACACACACACATACACACCTA 59.867 43.478 0.00 0.00 0.00 3.08
3276 6151 1.020437 TTTCTGAACATGTGCGTGCA 58.980 45.000 0.00 0.00 0.00 4.57
3279 6154 5.689383 AATTAGTTTCTGAACATGTGCGT 57.311 34.783 0.00 0.00 38.26 5.24
3528 6549 9.853555 ACAGTCTTCTAATCAATCGATATGATC 57.146 33.333 17.59 8.29 36.53 2.92
3943 7140 3.366374 CGCTTTCTTGTTCCTCCAAATCC 60.366 47.826 0.00 0.00 0.00 3.01
3969 7166 2.492881 TCTCGCGTTAATGGAACTGGTA 59.507 45.455 5.77 0.00 35.74 3.25
4001 7198 2.699954 TCAATCTTCTCTTTCGCACCC 58.300 47.619 0.00 0.00 0.00 4.61
4018 7215 5.477984 AGTTTCAAAGCTTGCCAGATATCAA 59.522 36.000 0.00 0.00 0.00 2.57
4025 7247 2.620115 TCAGAGTTTCAAAGCTTGCCAG 59.380 45.455 0.00 0.00 0.00 4.85
4053 7275 1.065551 CAGCCGCCTAATAACAAAGCC 59.934 52.381 0.00 0.00 0.00 4.35
4207 7432 6.419484 TCTGAGTTTTGACTATGAAGTGGA 57.581 37.500 0.00 0.00 35.56 4.02
4251 7476 5.222079 ACAAATTTAACCCACCCATGAAC 57.778 39.130 0.00 0.00 0.00 3.18
4256 7487 6.203526 AGTAGTACAAATTTAACCCACCCA 57.796 37.500 2.52 0.00 0.00 4.51
4261 7492 6.955364 AGAGGGAGTAGTACAAATTTAACCC 58.045 40.000 2.52 0.00 0.00 4.11
4262 7493 8.098912 TGAAGAGGGAGTAGTACAAATTTAACC 58.901 37.037 2.52 0.00 0.00 2.85
4276 7507 4.102524 TCTTGCAAAAGTGAAGAGGGAGTA 59.897 41.667 0.00 0.00 0.00 2.59
4277 7508 3.117888 TCTTGCAAAAGTGAAGAGGGAGT 60.118 43.478 0.00 0.00 0.00 3.85
4278 7509 3.251972 GTCTTGCAAAAGTGAAGAGGGAG 59.748 47.826 0.00 0.00 0.00 4.30
4279 7510 3.214328 GTCTTGCAAAAGTGAAGAGGGA 58.786 45.455 0.00 0.00 0.00 4.20
4280 7511 2.294512 GGTCTTGCAAAAGTGAAGAGGG 59.705 50.000 0.00 0.00 0.00 4.30
4281 7512 3.217626 AGGTCTTGCAAAAGTGAAGAGG 58.782 45.455 0.00 0.00 0.00 3.69
4282 7513 4.907879 AAGGTCTTGCAAAAGTGAAGAG 57.092 40.909 0.00 0.00 0.00 2.85
4283 7514 5.659440 AAAAGGTCTTGCAAAAGTGAAGA 57.341 34.783 0.00 0.00 0.00 2.87
4284 7515 6.693113 GTCTAAAAGGTCTTGCAAAAGTGAAG 59.307 38.462 0.00 0.00 0.00 3.02
4285 7516 6.151985 TGTCTAAAAGGTCTTGCAAAAGTGAA 59.848 34.615 0.00 0.00 0.00 3.18
4286 7517 5.650266 TGTCTAAAAGGTCTTGCAAAAGTGA 59.350 36.000 0.00 0.00 0.00 3.41
4287 7518 5.890334 TGTCTAAAAGGTCTTGCAAAAGTG 58.110 37.500 0.00 0.00 0.00 3.16
4288 7519 6.715347 ATGTCTAAAAGGTCTTGCAAAAGT 57.285 33.333 0.00 0.00 0.00 2.66
4289 7520 9.528018 TTAAATGTCTAAAAGGTCTTGCAAAAG 57.472 29.630 0.00 0.00 0.00 2.27
4290 7521 9.528018 CTTAAATGTCTAAAAGGTCTTGCAAAA 57.472 29.630 0.00 0.00 0.00 2.44
4291 7522 8.908903 TCTTAAATGTCTAAAAGGTCTTGCAAA 58.091 29.630 0.00 0.00 0.00 3.68
4292 7523 8.349983 GTCTTAAATGTCTAAAAGGTCTTGCAA 58.650 33.333 0.00 0.00 0.00 4.08
4293 7524 7.500892 TGTCTTAAATGTCTAAAAGGTCTTGCA 59.499 33.333 0.00 0.00 0.00 4.08
4294 7525 7.871853 TGTCTTAAATGTCTAAAAGGTCTTGC 58.128 34.615 0.00 0.00 0.00 4.01
4295 7526 9.665264 GTTGTCTTAAATGTCTAAAAGGTCTTG 57.335 33.333 0.00 0.00 0.00 3.02
4296 7527 9.403583 TGTTGTCTTAAATGTCTAAAAGGTCTT 57.596 29.630 0.00 0.00 0.00 3.01
4297 7528 8.837389 GTGTTGTCTTAAATGTCTAAAAGGTCT 58.163 33.333 0.00 0.00 0.00 3.85
4298 7529 8.074370 GGTGTTGTCTTAAATGTCTAAAAGGTC 58.926 37.037 0.00 0.00 0.00 3.85
4299 7530 7.778382 AGGTGTTGTCTTAAATGTCTAAAAGGT 59.222 33.333 0.00 0.00 0.00 3.50
4300 7531 8.166422 AGGTGTTGTCTTAAATGTCTAAAAGG 57.834 34.615 0.00 0.00 0.00 3.11
4305 7536 9.616156 TGTTTTAGGTGTTGTCTTAAATGTCTA 57.384 29.630 0.00 0.00 0.00 2.59
4306 7537 8.514330 TGTTTTAGGTGTTGTCTTAAATGTCT 57.486 30.769 0.00 0.00 0.00 3.41
4307 7538 8.403236 ACTGTTTTAGGTGTTGTCTTAAATGTC 58.597 33.333 0.00 0.00 0.00 3.06
4308 7539 8.288689 ACTGTTTTAGGTGTTGTCTTAAATGT 57.711 30.769 0.00 0.00 0.00 2.71
4309 7540 9.233232 GAACTGTTTTAGGTGTTGTCTTAAATG 57.767 33.333 0.00 0.00 0.00 2.32
4310 7541 8.962679 TGAACTGTTTTAGGTGTTGTCTTAAAT 58.037 29.630 0.00 0.00 0.00 1.40
4311 7542 8.338072 TGAACTGTTTTAGGTGTTGTCTTAAA 57.662 30.769 0.00 0.00 0.00 1.52
4312 7543 7.925043 TGAACTGTTTTAGGTGTTGTCTTAA 57.075 32.000 0.00 0.00 0.00 1.85
4313 7544 7.925043 TTGAACTGTTTTAGGTGTTGTCTTA 57.075 32.000 0.00 0.00 0.00 2.10
4314 7545 6.827586 TTGAACTGTTTTAGGTGTTGTCTT 57.172 33.333 0.00 0.00 0.00 3.01
4315 7546 7.404671 AATTGAACTGTTTTAGGTGTTGTCT 57.595 32.000 0.00 0.00 0.00 3.41
4316 7547 7.757624 TGAAATTGAACTGTTTTAGGTGTTGTC 59.242 33.333 0.00 0.00 0.00 3.18
4317 7548 7.607250 TGAAATTGAACTGTTTTAGGTGTTGT 58.393 30.769 0.00 0.00 0.00 3.32
4318 7549 8.379902 GTTGAAATTGAACTGTTTTAGGTGTTG 58.620 33.333 0.00 0.00 0.00 3.33
4319 7550 8.311109 AGTTGAAATTGAACTGTTTTAGGTGTT 58.689 29.630 0.00 0.00 32.30 3.32
4320 7551 7.759433 CAGTTGAAATTGAACTGTTTTAGGTGT 59.241 33.333 15.51 0.00 43.55 4.16
4321 7552 8.118893 CAGTTGAAATTGAACTGTTTTAGGTG 57.881 34.615 15.51 0.00 43.55 4.00
4331 7562 6.540914 TCGTTTAGGACAGTTGAAATTGAACT 59.459 34.615 0.00 0.00 33.82 3.01
4332 7563 6.631636 GTCGTTTAGGACAGTTGAAATTGAAC 59.368 38.462 0.00 0.00 36.91 3.18
4333 7564 6.540914 AGTCGTTTAGGACAGTTGAAATTGAA 59.459 34.615 5.50 0.00 39.42 2.69
4334 7565 6.053005 AGTCGTTTAGGACAGTTGAAATTGA 58.947 36.000 5.50 0.00 39.42 2.57
4335 7566 6.300354 AGTCGTTTAGGACAGTTGAAATTG 57.700 37.500 5.50 0.00 39.42 2.32
4336 7567 6.937436 AAGTCGTTTAGGACAGTTGAAATT 57.063 33.333 5.50 0.00 39.42 1.82
4337 7568 6.987992 TGTAAGTCGTTTAGGACAGTTGAAAT 59.012 34.615 5.50 0.00 39.42 2.17
4338 7569 6.339730 TGTAAGTCGTTTAGGACAGTTGAAA 58.660 36.000 5.50 0.00 39.42 2.69
4339 7570 5.904941 TGTAAGTCGTTTAGGACAGTTGAA 58.095 37.500 5.50 0.00 39.42 2.69
4340 7571 5.518848 TGTAAGTCGTTTAGGACAGTTGA 57.481 39.130 5.50 0.00 39.42 3.18
4341 7572 6.592798 TTTGTAAGTCGTTTAGGACAGTTG 57.407 37.500 5.50 0.00 39.42 3.16
4342 7573 6.820152 ACTTTTGTAAGTCGTTTAGGACAGTT 59.180 34.615 5.50 0.00 40.60 3.16
4343 7574 6.257193 CACTTTTGTAAGTCGTTTAGGACAGT 59.743 38.462 5.50 0.00 42.67 3.55
4344 7575 6.477688 TCACTTTTGTAAGTCGTTTAGGACAG 59.522 38.462 5.50 0.00 42.67 3.51
4345 7576 6.339730 TCACTTTTGTAAGTCGTTTAGGACA 58.660 36.000 5.50 0.00 42.67 4.02
4346 7577 6.833342 TCACTTTTGTAAGTCGTTTAGGAC 57.167 37.500 0.00 0.00 42.67 3.85
4347 7578 6.817641 TGTTCACTTTTGTAAGTCGTTTAGGA 59.182 34.615 0.00 0.00 42.67 2.94
4348 7579 7.007313 TGTTCACTTTTGTAAGTCGTTTAGG 57.993 36.000 0.00 0.00 42.67 2.69
4349 7580 7.902032 TCTGTTCACTTTTGTAAGTCGTTTAG 58.098 34.615 0.00 0.00 42.67 1.85
4350 7581 7.010738 CCTCTGTTCACTTTTGTAAGTCGTTTA 59.989 37.037 0.00 0.00 42.67 2.01
4351 7582 6.183360 CCTCTGTTCACTTTTGTAAGTCGTTT 60.183 38.462 0.00 0.00 42.67 3.60
4352 7583 5.293569 CCTCTGTTCACTTTTGTAAGTCGTT 59.706 40.000 0.00 0.00 42.67 3.85
4353 7584 4.809426 CCTCTGTTCACTTTTGTAAGTCGT 59.191 41.667 0.00 0.00 42.67 4.34
4354 7585 4.211374 CCCTCTGTTCACTTTTGTAAGTCG 59.789 45.833 0.00 0.00 42.67 4.18
4355 7586 5.365619 TCCCTCTGTTCACTTTTGTAAGTC 58.634 41.667 0.00 0.00 42.67 3.01
4356 7587 5.367945 TCCCTCTGTTCACTTTTGTAAGT 57.632 39.130 0.00 0.00 45.40 2.24
4357 7588 6.884280 AATCCCTCTGTTCACTTTTGTAAG 57.116 37.500 0.00 0.00 37.40 2.34
4358 7589 6.430000 GCTAATCCCTCTGTTCACTTTTGTAA 59.570 38.462 0.00 0.00 0.00 2.41
4359 7590 5.938125 GCTAATCCCTCTGTTCACTTTTGTA 59.062 40.000 0.00 0.00 0.00 2.41
4360 7591 4.762251 GCTAATCCCTCTGTTCACTTTTGT 59.238 41.667 0.00 0.00 0.00 2.83
4361 7592 4.761739 TGCTAATCCCTCTGTTCACTTTTG 59.238 41.667 0.00 0.00 0.00 2.44
4362 7593 4.985538 TGCTAATCCCTCTGTTCACTTTT 58.014 39.130 0.00 0.00 0.00 2.27
4363 7594 4.640771 TGCTAATCCCTCTGTTCACTTT 57.359 40.909 0.00 0.00 0.00 2.66
4364 7595 4.851639 ATGCTAATCCCTCTGTTCACTT 57.148 40.909 0.00 0.00 0.00 3.16
4365 7596 5.279206 CGATATGCTAATCCCTCTGTTCACT 60.279 44.000 0.00 0.00 0.00 3.41
4366 7597 4.926238 CGATATGCTAATCCCTCTGTTCAC 59.074 45.833 0.00 0.00 0.00 3.18
4367 7598 4.561530 GCGATATGCTAATCCCTCTGTTCA 60.562 45.833 0.00 0.00 41.73 3.18
4368 7599 3.929610 GCGATATGCTAATCCCTCTGTTC 59.070 47.826 0.00 0.00 41.73 3.18
4369 7600 3.931578 GCGATATGCTAATCCCTCTGTT 58.068 45.455 0.00 0.00 41.73 3.16
4370 7601 3.601443 GCGATATGCTAATCCCTCTGT 57.399 47.619 0.00 0.00 41.73 3.41
4399 7630 4.281941 TGCAGAGCGATATTCCACTAAGAT 59.718 41.667 0.00 0.00 0.00 2.40
4400 7631 3.636764 TGCAGAGCGATATTCCACTAAGA 59.363 43.478 0.00 0.00 0.00 2.10
4406 7637 1.973515 AGGATGCAGAGCGATATTCCA 59.026 47.619 0.00 0.00 0.00 3.53
4412 7643 2.632028 ACAGATAAGGATGCAGAGCGAT 59.368 45.455 0.00 0.00 0.00 4.58
4455 7686 3.668447 AGGATTACAGTTGCTCACAGTG 58.332 45.455 0.00 0.00 0.00 3.66
4589 7825 9.610104 AAAAATCCTTAAACAAGGGTATTAGGT 57.390 29.630 3.68 0.00 40.38 3.08
4620 7856 5.990996 GTCAATTAATGGCAATTATGGTGGG 59.009 40.000 0.00 0.00 32.41 4.61
4623 7859 7.422465 ACAGTCAATTAATGGCAATTATGGT 57.578 32.000 0.00 0.00 35.54 3.55
4624 7860 7.225145 CCAACAGTCAATTAATGGCAATTATGG 59.775 37.037 0.00 0.00 35.54 2.74
4633 7869 6.656693 ACTCTTCTCCAACAGTCAATTAATGG 59.343 38.462 0.00 0.00 0.00 3.16
4638 7874 5.296151 TGACTCTTCTCCAACAGTCAATT 57.704 39.130 0.00 0.00 41.78 2.32
4650 7886 3.454082 AGTTCCATGGGATGACTCTTCTC 59.546 47.826 13.02 0.00 0.00 2.87
4730 7966 5.954752 TCCAATGCCTTGTGAAATTATGGTA 59.045 36.000 0.91 0.00 0.00 3.25
4731 7967 4.776837 TCCAATGCCTTGTGAAATTATGGT 59.223 37.500 0.91 0.00 0.00 3.55
4732 7968 5.111293 GTCCAATGCCTTGTGAAATTATGG 58.889 41.667 0.91 0.00 0.00 2.74
4847 8084 3.492102 ATGTGGGCAAGCGAAGTATAT 57.508 42.857 0.00 0.00 0.00 0.86
4887 8125 4.574828 ACTGAATGCGGGTTGTATGATAAC 59.425 41.667 0.00 0.00 0.00 1.89
4904 8142 9.784531 CATGTTTATATGGAGTCCTAACTGAAT 57.215 33.333 11.33 0.00 35.28 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.