AutoCloner

Multiple sequence alignment - TraesCS5D01G496300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G496300	chr5D	100.000	4175	0	0	1	4175	527100205	527096031	0.000000e+00	7710.0
1	TraesCS5D01G496300	chr5D	79.834	1086	169	24	1076	2129	526921352	526920285	0.000000e+00	747.0
2	TraesCS5D01G496300	chr5D	91.204	432	36	1	2025	2454	527098033	527097602	1.670000e-163	586.0
3	TraesCS5D01G496300	chr5D	91.204	432	36	1	2173	2604	527098181	527097752	1.670000e-163	586.0
4	TraesCS5D01G496300	chr5D	89.825	285	25	3	2025	2306	527097885	527097602	3.070000e-96	363.0
5	TraesCS5D01G496300	chr5D	89.825	285	25	3	2321	2604	527098181	527097900	3.070000e-96	363.0
6	TraesCS5D01G496300	chr5D	81.526	249	46	0	2922	3170	526919879	526919631	5.470000e-49	206.0
7	TraesCS5D01G496300	chr5D	91.045	67	5	1	3271	3337	527096858	527096793	5.750000e-14	89.8
8	TraesCS5D01G496300	chr5D	91.045	67	5	1	3348	3413	527096935	527096869	5.750000e-14	89.8
9	TraesCS5D01G496300	chr5B	96.803	2440	42	6	859	3297	663137559	663135155	0.000000e+00	4041.0
10	TraesCS5D01G496300	chr5B	94.449	1135	44	12	3059	4175	663079839	663078706	0.000000e+00	1729.0
11	TraesCS5D01G496300	chr5B	95.859	797	31	2	1366	2161	663082448	663081653	0.000000e+00	1288.0
12	TraesCS5D01G496300	chr5B	95.033	765	8	5	2262	3025	663080571	663079836	0.000000e+00	1175.0
13	TraesCS5D01G496300	chr5B	87.774	638	36	12	3	623	663138252	663137640	0.000000e+00	708.0
14	TraesCS5D01G496300	chr5B	94.186	430	14	3	3690	4119	663134731	663134313	0.000000e+00	645.0
15	TraesCS5D01G496300	chr5B	91.244	434	28	4	740	1173	663091632	663091209	2.160000e-162	582.0
16	TraesCS5D01G496300	chr5B	90.993	433	36	2	2025	2454	663136252	663135820	7.780000e-162	580.0
17	TraesCS5D01G496300	chr5B	90.972	432	37	1	2173	2604	663136400	663135971	7.780000e-162	580.0
18	TraesCS5D01G496300	chr5B	90.988	344	27	3	2114	2454	663080571	663080229	1.060000e-125	460.0
19	TraesCS5D01G496300	chr5B	85.961	463	22	16	167	602	663140516	663140070	4.920000e-124	455.0
20	TraesCS5D01G496300	chr5B	91.241	274	14	3	3327	3592	663135159	663134888	8.530000e-97	364.0
21	TraesCS5D01G496300	chr5B	89.510	286	24	5	2025	2306	663080512	663080229	1.430000e-94	357.0
22	TraesCS5D01G496300	chr5B	89.510	286	25	4	2025	2306	663136104	663135820	1.430000e-94	357.0
23	TraesCS5D01G496300	chr5B	89.437	284	28	1	2321	2604	663136400	663136119	1.430000e-94	357.0
24	TraesCS5D01G496300	chr5B	89.637	193	17	2	2412	2604	663080569	663080380	4.170000e-60	243.0
25	TraesCS5D01G496300	chr5B	98.450	129	2	0	1	129	663140644	663140516	1.170000e-55	228.0
26	TraesCS5D01G496300	chr5B	92.537	67	4	1	3348	3413	663079625	663079559	1.240000e-15	95.3
27	TraesCS5D01G496300	chr5B	90.476	63	5	1	3275	3337	663079538	663079477	9.620000e-12	82.4
28	TraesCS5D01G496300	chr5B	97.500	40	1	0	644	683	663137600	663137561	7.490000e-08	69.4
29	TraesCS5D01G496300	chr5A	97.001	1634	42	2	688	2321	654111592	654109966	0.000000e+00	2739.0
30	TraesCS5D01G496300	chr5A	96.781	963	19	7	2321	3273	654109725	654108765	0.000000e+00	1596.0
31	TraesCS5D01G496300	chr5A	90.020	491	28	7	3347	3817	654108732	654108243	2.130000e-172	616.0
32	TraesCS5D01G496300	chr5A	90.741	378	6	6	1	376	654112277	654111927	1.050000e-130	477.0
33	TraesCS5D01G496300	chr5A	92.254	284	20	1	2173	2454	654109725	654109442	6.500000e-108	401.0
34	TraesCS5D01G496300	chr5A	90.141	284	26	1	2321	2604	654110262	654109981	6.590000e-98	368.0
35	TraesCS5D01G496300	chr5A	89.789	284	27	1	2025	2306	654109725	654109442	3.070000e-96	363.0
36	TraesCS5D01G496300	chr5A	83.417	199	10	9	511	687	654111822	654111625	3.340000e-36	163.0
37	TraesCS5D01G496300	chr5A	94.030	67	4	0	3271	3337	654108731	654108665	7.380000e-18	102.0
38	TraesCS5D01G496300	chr5A	98.000	50	1	0	476	525	654111887	654111838	2.070000e-13	87.9
39	TraesCS5D01G496300	chr5A	89.091	55	6	0	4121	4175	654089508	654089454	7.490000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G496300	chr5D	527096031	527100205	4174	True	1398.228571	7710	92.021143	1	4175	7	chr5D.!!$R2	4174
1	TraesCS5D01G496300	chr5D	526919631	526921352	1721	True	476.500000	747	80.680000	1076	3170	2	chr5D.!!$R1	2094
2	TraesCS5D01G496300	chr5B	663134313	663140644	6331	True	762.218182	4041	92.075182	1	4119	11	chr5B.!!$R3	4118
3	TraesCS5D01G496300	chr5B	663078706	663082448	3742	True	678.712500	1729	92.311125	1366	4175	8	chr5B.!!$R2	2809
4	TraesCS5D01G496300	chr5A	654108243	654112277	4034	True	691.290000	2739	92.217400	1	3817	10	chr5A.!!$R2	3816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
823	3326	0.605319	CGGGCCTTTGCAGTTACTGA	60.605	55.0	17.4	0.0	40.13	3.41	F
2109	4646	0.524862	CAGCACAATGCCAAGAGGAC	59.475	55.0	0.0	0.0	46.52	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2569	6627	1.601914	CGCTTTGTTTCCTTTTCCGGG	60.602	52.381	0.0	0.0	0.00	5.73	R
4100	8440	0.325296	AATCAGCCGACCTACCTGGA	60.325	55.000	0.0	0.0	39.71	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	2.672996	GCCAGCGCAAGGAAGGAA	60.673	61.111	21.37	0.00	38.28	3.36
172	2563	2.611518	CTCACTCAAATCGAGGGTGTC	58.388	52.381	3.39	0.00	46.22	3.67
185	2576	2.276116	GGTGTCGAGCAGTGGGAGA	61.276	63.158	0.00	0.00	0.00	3.71
361	2752	1.136984	CCTCTACTCCGTGCACGAC	59.863	63.158	39.10	0.81	43.02	4.34
424	2817	2.958355	TGGGCTAAAATCTAGCATTGCC	59.042	45.455	4.70	0.00	42.06	4.52
425	2818	2.958355	GGGCTAAAATCTAGCATTGCCA	59.042	45.455	4.70	0.00	42.06	4.92
427	2820	4.321527	GGGCTAAAATCTAGCATTGCCATC	60.322	45.833	4.70	0.00	42.06	3.51
429	2822	5.218139	GCTAAAATCTAGCATTGCCATCAC	58.782	41.667	4.70	0.00	40.14	3.06
430	2823	5.221106	GCTAAAATCTAGCATTGCCATCACA	60.221	40.000	4.70	0.00	40.14	3.58
431	2824	5.664294	AAAATCTAGCATTGCCATCACAA	57.336	34.783	4.70	0.00	0.00	3.33
433	2826	5.864418	AATCTAGCATTGCCATCACAATT	57.136	34.783	4.70	0.00	38.19	2.32
434	2827	6.964807	AATCTAGCATTGCCATCACAATTA	57.035	33.333	4.70	0.00	38.19	1.40
435	2828	6.570672	ATCTAGCATTGCCATCACAATTAG	57.429	37.500	4.70	0.00	38.19	1.73
436	2829	3.447918	AGCATTGCCATCACAATTAGC	57.552	42.857	4.70	0.00	38.19	3.09
437	2830	2.761767	AGCATTGCCATCACAATTAGCA	59.238	40.909	4.70	0.00	38.19	3.49
438	2831	3.386726	AGCATTGCCATCACAATTAGCAT	59.613	39.130	4.70	0.00	38.19	3.79
439	2832	3.739300	GCATTGCCATCACAATTAGCATC	59.261	43.478	0.00	0.00	38.19	3.91
441	2834	5.278610	GCATTGCCATCACAATTAGCATCTA	60.279	40.000	0.00	0.00	38.19	1.98
442	2835	5.756195	TTGCCATCACAATTAGCATCTAC	57.244	39.130	0.00	0.00	32.67	2.59
443	2836	4.779696	TGCCATCACAATTAGCATCTACA	58.220	39.130	0.00	0.00	0.00	2.74
444	2837	5.192176	TGCCATCACAATTAGCATCTACAA	58.808	37.500	0.00	0.00	0.00	2.41
449	2842	9.669353	CCATCACAATTAGCATCTACAATAAAC	57.331	33.333	0.00	0.00	0.00	2.01
455	2848	9.849607	CAATTAGCATCTACAATAAACTACACG	57.150	33.333	0.00	0.00	0.00	4.49
456	2849	9.811995	AATTAGCATCTACAATAAACTACACGA	57.188	29.630	0.00	0.00	0.00	4.35
458	2851	9.811995	TTAGCATCTACAATAAACTACACGAAT	57.188	29.630	0.00	0.00	0.00	3.34
460	2853	7.764443	AGCATCTACAATAAACTACACGAATGT	59.236	33.333	0.00	0.00	43.30	2.71
462	2855	9.302345	CATCTACAATAAACTACACGAATGTCT	57.698	33.333	0.00	0.00	40.48	3.41
465	2858	7.956420	ACAATAAACTACACGAATGTCTCAA	57.044	32.000	0.00	0.00	40.48	3.02
466	2859	8.373048	ACAATAAACTACACGAATGTCTCAAA	57.627	30.769	0.00	0.00	40.48	2.69
467	2860	8.832521	ACAATAAACTACACGAATGTCTCAAAA	58.167	29.630	0.00	0.00	40.48	2.44
468	2861	9.658475	CAATAAACTACACGAATGTCTCAAAAA	57.342	29.630	0.00	0.00	40.48	1.94
627	3079	8.072321	ACTCTTCACAGGGCACATATATATAG	57.928	38.462	0.00	0.00	0.00	1.31
628	3080	7.676043	ACTCTTCACAGGGCACATATATATAGT	59.324	37.037	0.00	0.00	0.00	2.12
821	3324	1.971695	GCGGGCCTTTGCAGTTACT	60.972	57.895	0.84	0.00	40.13	2.24
823	3326	0.605319	CGGGCCTTTGCAGTTACTGA	60.605	55.000	17.40	0.00	40.13	3.41
830	3333	4.036852	GCCTTTGCAGTTACTGACTCTTTT	59.963	41.667	17.40	0.00	36.10	2.27
836	3339	6.112734	TGCAGTTACTGACTCTTTTCTTCAA	58.887	36.000	17.40	0.00	36.10	2.69
888	3391	9.677567	TTAACATTCTTTTACACTTGATGCTTC	57.322	29.630	0.00	0.00	0.00	3.86
897	3400	1.002624	TTGATGCTTCGGTCCCCAC	60.003	57.895	0.00	0.00	0.00	4.61
898	3401	1.488705	TTGATGCTTCGGTCCCCACT	61.489	55.000	0.00	0.00	0.00	4.00
899	3402	1.153349	GATGCTTCGGTCCCCACTC	60.153	63.158	0.00	0.00	0.00	3.51
900	3403	2.595009	GATGCTTCGGTCCCCACTCC	62.595	65.000	0.00	0.00	0.00	3.85
901	3404	4.097361	GCTTCGGTCCCCACTCCC	62.097	72.222	0.00	0.00	0.00	4.30
902	3405	3.400054	CTTCGGTCCCCACTCCCC	61.400	72.222	0.00	0.00	0.00	4.81
903	3406	4.257810	TTCGGTCCCCACTCCCCA	62.258	66.667	0.00	0.00	0.00	4.96
950	3453	7.336427	TGTCATTCTCATGCACATTTACATGTA	59.664	33.333	0.08	0.08	42.14	2.29
1148	3651	2.425143	TATACTTCCGTGACGACCCT	57.575	50.000	6.54	0.00	0.00	4.34
1222	3725	4.648626	ATCATGGCGATGGGCGGG	62.649	66.667	8.98	0.00	44.92	6.13
1272	3775	0.773644	ATGTCTGGCCTGTCAAGGTT	59.226	50.000	13.06	0.00	46.43	3.50
1437	3940	4.032558	GTCATTAAAGAGTTCGGCCTAACG	59.967	45.833	13.97	0.00	34.46	3.18
1967	4503	6.502138	ACCTTCCAAAATGGGAATAATGAGA	58.498	36.000	0.00	0.00	45.49	3.27
2023	4560	4.036262	AGCGAGCAATGTGAGTAAACAAAA	59.964	37.500	0.00	0.00	32.81	2.44
2109	4646	0.524862	CAGCACAATGCCAAGAGGAC	59.475	55.000	0.00	0.00	46.52	3.85
2127	4664	2.400399	GACGAACATGTTTCCACTCGA	58.600	47.619	19.19	0.00	0.00	4.04
2274	6090	4.103153	AGAGGAAGAACATGTTTCCACTCA	59.897	41.667	24.62	0.00	44.26	3.41
2414	6471	3.033368	AGCGAAGAAGAAGAACCTGTC	57.967	47.619	0.00	0.00	0.00	3.51
2569	6627	4.293415	CAAGAGGAAGAACATGTTTGCAC	58.707	43.478	13.36	1.87	0.00	4.57
2881	6970	6.712095	ACTCGGTGCATAATATTTGTCATCAT	59.288	34.615	0.00	0.00	0.00	2.45
2882	6971	7.877612	ACTCGGTGCATAATATTTGTCATCATA	59.122	33.333	0.00	0.00	0.00	2.15
3043	7172	0.394352	CAACTACCATCCAGGCACCC	60.394	60.000	0.00	0.00	43.14	4.61
3281	7485	4.392940	ACATGATAATCAACCTGCTAGGC	58.607	43.478	0.00	0.00	39.63	3.93
3321	7525	0.753111	GATTAGGTGGCTGGCTTGGG	60.753	60.000	2.00	0.00	0.00	4.12
3437	7649	5.116180	CCTGCTAGGTGTTGATTTTATCGA	58.884	41.667	0.00	0.00	0.00	3.59
3489	7701	6.570692	TGTTTAGCCTCAGTGCTACTATTAC	58.429	40.000	0.00	0.00	43.25	1.89
3596	7826	2.645838	AGTGCTGCCATTACCCATAG	57.354	50.000	0.00	0.00	0.00	2.23
3766	8098	8.325282	CGCTTTCAAGATTATACACGATACAAA	58.675	33.333	0.00	0.00	0.00	2.83
4100	8440	2.923035	CCACGGGTCCACCAGTCT	60.923	66.667	0.00	0.00	42.53	3.24
4108	8448	1.187087	GTCCACCAGTCTCCAGGTAG	58.813	60.000	0.00	0.00	36.07	3.18
4109	8449	0.041238	TCCACCAGTCTCCAGGTAGG	59.959	60.000	0.00	0.00	36.07	3.18
4130	8470	1.089112	CGGCTGATTTGTGAGATGCA	58.911	50.000	0.00	0.00	0.00	3.96
4152	8492	3.782523	AGAGCTTTCCTGGGATGATACAA	59.217	43.478	0.00	0.00	0.00	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
172	2563	0.389166	GTTCACTCTCCCACTGCTCG	60.389	60.000	0.00	0.00	0.00	5.03
185	2576	1.210478	CAGATCCATTCCCCGTTCACT	59.790	52.381	0.00	0.00	0.00	3.41
361	2752	2.362889	GGGTTGGACCTGGCCATG	60.363	66.667	5.51	6.06	38.64	3.66
429	2822	9.849607	CGTGTAGTTTATTGTAGATGCTAATTG	57.150	33.333	0.00	0.00	0.00	2.32
430	2823	9.811995	TCGTGTAGTTTATTGTAGATGCTAATT	57.188	29.630	0.00	0.00	0.00	1.40
431	2824	9.811995	TTCGTGTAGTTTATTGTAGATGCTAAT	57.188	29.630	0.00	0.00	0.00	1.73
433	2826	9.244799	CATTCGTGTAGTTTATTGTAGATGCTA	57.755	33.333	0.00	0.00	0.00	3.49
434	2827	7.764443	ACATTCGTGTAGTTTATTGTAGATGCT	59.236	33.333	0.00	0.00	0.00	3.79
435	2828	7.906160	ACATTCGTGTAGTTTATTGTAGATGC	58.094	34.615	0.00	0.00	0.00	3.91
436	2829	9.302345	AGACATTCGTGTAGTTTATTGTAGATG	57.698	33.333	0.00	0.00	0.00	2.90
437	2830	9.517609	GAGACATTCGTGTAGTTTATTGTAGAT	57.482	33.333	0.00	0.00	0.00	1.98
438	2831	8.517056	TGAGACATTCGTGTAGTTTATTGTAGA	58.483	33.333	0.00	0.00	0.00	2.59
439	2832	8.683550	TGAGACATTCGTGTAGTTTATTGTAG	57.316	34.615	0.00	0.00	0.00	2.74
441	2834	7.956420	TTGAGACATTCGTGTAGTTTATTGT	57.044	32.000	0.00	0.00	0.00	2.71
442	2835	9.658475	TTTTTGAGACATTCGTGTAGTTTATTG	57.342	29.630	0.00	0.00	0.00	1.90
549	2974	3.434319	CACGCTGCCGGATGCTTT	61.434	61.111	5.05	0.00	42.00	3.51
551	2976	4.393155	TTCACGCTGCCGGATGCT	62.393	61.111	5.05	0.00	42.00	3.79
553	2978	2.125552	TCTTCACGCTGCCGGATG	60.126	61.111	5.05	0.00	39.22	3.51
554	2979	2.185350	CTCTTCACGCTGCCGGAT	59.815	61.111	5.05	0.00	39.22	4.18
627	3079	9.959749	CTTTTGAGTATATCTTCTAGTCCTCAC	57.040	37.037	0.00	0.00	0.00	3.51
628	3080	8.634444	GCTTTTGAGTATATCTTCTAGTCCTCA	58.366	37.037	0.00	0.00	0.00	3.86
716	3219	2.394632	ACGAATGTATGGAGGCTGGTA	58.605	47.619	0.00	0.00	0.00	3.25
897	3400	2.449464	TGCATCAATCAACTTGGGGAG	58.551	47.619	0.00	0.00	35.43	4.30
898	3401	2.601240	TGCATCAATCAACTTGGGGA	57.399	45.000	0.00	0.00	35.43	4.81
899	3402	3.527533	CAATGCATCAATCAACTTGGGG	58.472	45.455	0.00	0.00	35.43	4.96
900	3403	2.933906	GCAATGCATCAATCAACTTGGG	59.066	45.455	0.00	0.00	35.43	4.12
901	3404	3.857052	AGCAATGCATCAATCAACTTGG	58.143	40.909	8.35	0.00	35.43	3.61
902	3405	4.562789	CAGAGCAATGCATCAATCAACTTG	59.437	41.667	8.35	0.00	36.09	3.16
903	3406	4.219944	ACAGAGCAATGCATCAATCAACTT	59.780	37.500	8.35	0.00	0.00	2.66
950	3453	0.963962	CCACCTGCAAGCAGTGAATT	59.036	50.000	19.60	0.00	42.15	2.17
1148	3651	2.580962	TGTGCTGCATAACCAAAGTGA	58.419	42.857	5.27	0.00	0.00	3.41
1222	3725	2.394563	GGCTGAGAACAAGAGCCGC	61.395	63.158	0.00	0.00	35.86	6.53
1227	3730	0.319555	CGAACGGGCTGAGAACAAGA	60.320	55.000	0.00	0.00	0.00	3.02
1230	3733	2.342279	CCGAACGGGCTGAGAACA	59.658	61.111	0.00	0.00	0.00	3.18
1272	3775	2.342279	CCTTTGGCGTCTCGGTCA	59.658	61.111	0.00	0.00	0.00	4.02
2109	4646	3.057019	TCTTCGAGTGGAAACATGTTCG	58.943	45.455	12.39	10.25	46.14	3.95
2127	4664	2.036346	GCCATTGCTTTGTGTCCTTCTT	59.964	45.455	0.00	0.00	33.53	2.52
2274	6090	3.493176	GCCATTGCTTTGTTTCCTTGTCT	60.493	43.478	0.00	0.00	33.53	3.41
2397	6454	4.039852	AGTGGAGACAGGTTCTTCTTCTTC	59.960	45.833	0.00	0.00	44.46	2.87
2414	6471	5.734503	GCTTTGTTTCCTTTTCTGAGTGGAG	60.735	44.000	0.00	0.00	0.00	3.86
2569	6627	1.601914	CGCTTTGTTTCCTTTTCCGGG	60.602	52.381	0.00	0.00	0.00	5.73
2881	6970	4.705991	TGTATCACAGTTCGTGGGTGTATA	59.294	41.667	0.00	0.00	46.36	1.47
2882	6971	3.512329	TGTATCACAGTTCGTGGGTGTAT	59.488	43.478	0.00	0.00	46.36	2.29
3043	7172	5.975344	TCGTAAGACAATTATAAGACCTGCG	59.025	40.000	0.00	0.00	45.01	5.18
3321	7525	6.038271	ACGAACCAAGTAAATATCATGCCTTC	59.962	38.462	0.00	0.00	0.00	3.46
3364	7574	4.396166	CCACCTAATCACAAGTCATGAACC	59.604	45.833	0.00	0.00	0.00	3.62
3428	7640	6.432936	CACTGCTGCATTACATCGATAAAAT	58.567	36.000	1.31	0.00	0.00	1.82
3489	7701	8.081633	GGAGACTTATGTGAATGAGTGATAGAG	58.918	40.741	0.00	0.00	0.00	2.43
3808	8140	7.624360	TTAGATCCGAATAAATTTGTGCTGT	57.376	32.000	0.00	0.00	0.00	4.40
3841	8173	7.588854	GGGAACAAAATAAACGTTACTCTGAAC	59.411	37.037	0.00	0.00	0.00	3.18
4088	8428	3.393360	CCTGGAGACTGGTGGACC	58.607	66.667	0.00	0.00	43.97	4.46
4100	8440	0.325296	AATCAGCCGACCTACCTGGA	60.325	55.000	0.00	0.00	39.71	3.86
4108	8448	1.667724	CATCTCACAAATCAGCCGACC	59.332	52.381	0.00	0.00	0.00	4.79
4109	8449	1.063174	GCATCTCACAAATCAGCCGAC	59.937	52.381	0.00	0.00	0.00	4.79
4130	8470	3.387962	TGTATCATCCCAGGAAAGCTCT	58.612	45.455	0.00	0.00	0.00	4.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.