Multiple sequence alignment - TraesCS5D01G495900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G495900 chr5D 100.000 2270 0 0 1 2270 526905041 526907310 0.000000e+00 4193.0
1 TraesCS5D01G495900 chr5D 100.000 64 0 0 2067 2130 526907042 526907105 3.960000e-23 119.0
2 TraesCS5D01G495900 chr5D 100.000 64 0 0 2002 2065 526907107 526907170 3.960000e-23 119.0
3 TraesCS5D01G495900 chr5D 100.000 37 0 0 1818 1854 526906822 526906858 4.050000e-08 69.4
4 TraesCS5D01G495900 chr5D 100.000 37 0 0 1782 1818 526906858 526906894 4.050000e-08 69.4
5 TraesCS5D01G495900 chr5B 88.644 1585 107 34 299 1851 662974713 662976256 0.000000e+00 1862.0
6 TraesCS5D01G495900 chr5B 90.476 231 15 4 1 225 662967087 662967316 4.740000e-77 298.0
7 TraesCS5D01G495900 chr5A 89.629 1186 79 20 418 1582 654083526 654084688 0.000000e+00 1469.0
8 TraesCS5D01G495900 chr5A 88.679 265 20 5 1 255 654083043 654083307 4.710000e-82 315.0
9 TraesCS5D01G495900 chr2B 90.136 588 30 13 1191 1766 66788612 66788041 0.000000e+00 739.0
10 TraesCS5D01G495900 chr4B 90.136 588 29 14 1191 1766 68885178 68884608 0.000000e+00 737.0
11 TraesCS5D01G495900 chr7B 89.966 588 31 13 1191 1766 598352197 598351626 0.000000e+00 734.0
12 TraesCS5D01G495900 chr7B 89.286 588 35 16 1191 1766 547790818 547790247 0.000000e+00 712.0
13 TraesCS5D01G495900 chr1B 89.456 588 34 13 1191 1766 89402337 89402908 0.000000e+00 717.0
14 TraesCS5D01G495900 chr6B 89.420 586 34 13 1193 1766 63966742 63967311 0.000000e+00 713.0
15 TraesCS5D01G495900 chr4A 89.286 588 35 13 1191 1766 737126832 737126261 0.000000e+00 712.0
16 TraesCS5D01G495900 chr1D 87.500 72 6 3 1963 2033 383165300 383165231 1.870000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G495900 chr5D 526905041 526907310 2269 False 913.96 4193 100.000 1 2270 5 chr5D.!!$F1 2269
1 TraesCS5D01G495900 chr5B 662974713 662976256 1543 False 1862.00 1862 88.644 299 1851 1 chr5B.!!$F2 1552
2 TraesCS5D01G495900 chr5A 654083043 654084688 1645 False 892.00 1469 89.154 1 1582 2 chr5A.!!$F1 1581
3 TraesCS5D01G495900 chr2B 66788041 66788612 571 True 739.00 739 90.136 1191 1766 1 chr2B.!!$R1 575
4 TraesCS5D01G495900 chr4B 68884608 68885178 570 True 737.00 737 90.136 1191 1766 1 chr4B.!!$R1 575
5 TraesCS5D01G495900 chr7B 598351626 598352197 571 True 734.00 734 89.966 1191 1766 1 chr7B.!!$R2 575
6 TraesCS5D01G495900 chr7B 547790247 547790818 571 True 712.00 712 89.286 1191 1766 1 chr7B.!!$R1 575
7 TraesCS5D01G495900 chr1B 89402337 89402908 571 False 717.00 717 89.456 1191 1766 1 chr1B.!!$F1 575
8 TraesCS5D01G495900 chr6B 63966742 63967311 569 False 713.00 713 89.420 1193 1766 1 chr6B.!!$F1 573
9 TraesCS5D01G495900 chr4A 737126261 737126832 571 True 712.00 712 89.286 1191 1766 1 chr4A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 510 0.382515 CGCAAAGAACAAAACGGGGA 59.617 50.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1607 1742 0.035439 ATGTTGGACGGGCGAAAGAT 60.035 50.0 0.0 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.016653 GGAACACGAGAAGCTCTGCC 61.017 60.000 0.00 0.00 0.00 4.85
46 47 3.377759 ACGAGAAGCTCTGCCGCT 61.378 61.111 0.00 0.00 43.31 5.52
97 98 4.183686 GCGGCGCCACGTACTCTA 62.184 66.667 28.98 0.00 35.98 2.43
98 99 2.719979 CGGCGCCACGTACTCTAT 59.280 61.111 28.98 0.00 0.00 1.98
100 101 1.370172 GGCGCCACGTACTCTATCG 60.370 63.158 24.80 0.00 0.00 2.92
101 102 2.009755 GCGCCACGTACTCTATCGC 61.010 63.158 0.00 0.00 0.00 4.58
102 103 1.647629 CGCCACGTACTCTATCGCT 59.352 57.895 0.00 0.00 0.00 4.93
112 113 1.729470 CTCTATCGCTCCACGCTGGT 61.729 60.000 4.33 0.00 43.23 4.00
184 186 1.669115 CCACAACTCCTCTGCGTGG 60.669 63.158 0.00 0.00 41.06 4.94
222 224 2.496111 GACGACCGAGGAGATAGACAT 58.504 52.381 0.00 0.00 0.00 3.06
225 227 2.235016 GACCGAGGAGATAGACATGCT 58.765 52.381 0.00 0.00 0.00 3.79
246 257 1.577736 CATCTCTCCAGTTCCAGGGT 58.422 55.000 0.00 0.00 0.00 4.34
266 290 6.688073 GGGTATTCTCCCAGAGATAAATCA 57.312 41.667 0.00 0.00 46.30 2.57
267 291 7.079451 GGGTATTCTCCCAGAGATAAATCAA 57.921 40.000 0.00 0.00 46.30 2.57
268 292 7.694093 GGGTATTCTCCCAGAGATAAATCAAT 58.306 38.462 0.00 0.00 46.30 2.57
269 293 7.609532 GGGTATTCTCCCAGAGATAAATCAATG 59.390 40.741 0.00 0.00 46.30 2.82
270 294 7.120432 GGTATTCTCCCAGAGATAAATCAATGC 59.880 40.741 0.00 0.00 38.56 3.56
271 295 5.901413 TCTCCCAGAGATAAATCAATGCT 57.099 39.130 0.00 0.00 33.35 3.79
272 296 6.257994 TCTCCCAGAGATAAATCAATGCTT 57.742 37.500 0.00 0.00 33.35 3.91
273 297 6.060136 TCTCCCAGAGATAAATCAATGCTTG 58.940 40.000 0.00 0.00 33.35 4.01
274 298 6.005066 TCCCAGAGATAAATCAATGCTTGA 57.995 37.500 1.85 1.85 45.01 3.02
275 299 6.060136 TCCCAGAGATAAATCAATGCTTGAG 58.940 40.000 5.15 0.00 43.98 3.02
276 300 5.241064 CCCAGAGATAAATCAATGCTTGAGG 59.759 44.000 5.15 0.00 43.98 3.86
277 301 5.278364 CCAGAGATAAATCAATGCTTGAGGC 60.278 44.000 5.15 0.00 43.98 4.70
278 302 5.531659 CAGAGATAAATCAATGCTTGAGGCT 59.468 40.000 0.00 0.00 43.98 4.58
279 303 6.039493 CAGAGATAAATCAATGCTTGAGGCTT 59.961 38.462 0.00 0.00 43.98 4.35
280 304 6.606395 AGAGATAAATCAATGCTTGAGGCTTT 59.394 34.615 0.00 4.11 43.98 3.51
281 305 7.123847 AGAGATAAATCAATGCTTGAGGCTTTT 59.876 33.333 0.00 3.85 43.98 2.27
282 306 7.618137 AGATAAATCAATGCTTGAGGCTTTTT 58.382 30.769 0.00 3.59 43.98 1.94
375 409 1.667724 CAGCTGCCTCGTCTAAAATGG 59.332 52.381 0.00 0.00 0.00 3.16
395 489 2.264480 CGATGTGACCCTTCGCCA 59.736 61.111 0.00 0.00 34.50 5.69
411 505 1.006494 CGCCAACGCAAAGAACAAAAC 60.006 47.619 0.00 0.00 34.03 2.43
416 510 0.382515 CGCAAAGAACAAAACGGGGA 59.617 50.000 0.00 0.00 0.00 4.81
479 583 2.956987 CGTCTTGGTCCGTACGGT 59.043 61.111 32.16 0.00 36.47 4.83
538 643 2.514592 CGCCAGCCGTGATCCATT 60.515 61.111 0.00 0.00 0.00 3.16
676 785 4.849329 CACGTACGGCGGCTCTCC 62.849 72.222 21.06 0.00 46.52 3.71
678 787 4.554363 CGTACGGCGGCTCTCCTG 62.554 72.222 13.24 0.00 36.85 3.86
679 788 4.208686 GTACGGCGGCTCTCCTGG 62.209 72.222 13.24 0.00 0.00 4.45
707 816 4.379243 CTTCCTCACGCGCACCCT 62.379 66.667 5.73 0.00 0.00 4.34
784 893 2.480845 GGCGTAAGTCACAAAGTCAGT 58.519 47.619 0.00 0.00 45.31 3.41
785 894 3.645884 GGCGTAAGTCACAAAGTCAGTA 58.354 45.455 0.00 0.00 45.31 2.74
786 895 3.427863 GGCGTAAGTCACAAAGTCAGTAC 59.572 47.826 0.00 0.00 45.31 2.73
875 984 1.645402 ATTAATCCCGCACCCTGGCT 61.645 55.000 0.00 0.00 0.00 4.75
910 1019 4.590647 TCACCTCACTTCATTCACTCTCTT 59.409 41.667 0.00 0.00 0.00 2.85
931 1040 2.930950 TGCTTGTTCTTGGTAGCTTGT 58.069 42.857 0.00 0.00 34.77 3.16
993 1106 3.370103 CGAGTCTAGGAGAAGACAGTCCT 60.370 52.174 6.76 0.00 46.89 3.85
998 1111 1.631388 AGGAGAAGACAGTCCTCGAGA 59.369 52.381 15.71 0.00 39.05 4.04
1035 1148 1.609061 CCGATGGAGTATGGCATGACC 60.609 57.143 10.98 10.89 39.84 4.02
1036 1149 1.800805 GATGGAGTATGGCATGACCG 58.199 55.000 10.98 0.00 43.94 4.79
1037 1150 1.070758 GATGGAGTATGGCATGACCGT 59.929 52.381 10.98 11.48 43.94 4.83
1083 1196 3.519930 GAGACGCCGAGGAGGGAC 61.520 72.222 0.00 0.00 41.48 4.46
1298 1419 2.493675 TCTGCAGACTACAGCAACTAGG 59.506 50.000 13.74 0.00 38.02 3.02
1308 1429 3.512033 CAGCAACTAGGTGTCTCCTAC 57.488 52.381 10.06 0.00 46.10 3.18
1309 1430 3.093057 CAGCAACTAGGTGTCTCCTACT 58.907 50.000 10.06 0.00 46.10 2.57
1322 1443 5.073417 GTGTCTCCTACTCCTAGGGAATAGA 59.927 48.000 9.46 2.38 40.31 1.98
1427 1549 1.577328 CCTGACGCGAAAATGGCAGT 61.577 55.000 15.93 0.00 0.00 4.40
1447 1573 4.217118 CAGTACCAAGAAGAATGCTGCTTT 59.783 41.667 0.00 0.00 37.96 3.51
1460 1586 1.798813 GCTGCTTTTGTGTGTGTGTCC 60.799 52.381 0.00 0.00 0.00 4.02
1465 1591 0.106918 TTTGTGTGTGTGTCCCCCTC 60.107 55.000 0.00 0.00 0.00 4.30
1466 1592 1.990160 TTGTGTGTGTGTCCCCCTCC 61.990 60.000 0.00 0.00 0.00 4.30
1494 1622 1.978580 GCTGGCCATAGGTAGGTGTAT 59.021 52.381 5.51 0.00 0.00 2.29
1558 1692 3.972706 GTACAGAAGTGTGCATGTACG 57.027 47.619 9.48 0.00 38.81 3.67
1559 1693 2.526304 ACAGAAGTGTGCATGTACGT 57.474 45.000 9.48 0.00 34.75 3.57
1560 1694 2.135139 ACAGAAGTGTGCATGTACGTG 58.865 47.619 10.89 10.89 34.75 4.49
1561 1695 2.135139 CAGAAGTGTGCATGTACGTGT 58.865 47.619 16.28 0.00 0.00 4.49
1562 1696 2.543848 CAGAAGTGTGCATGTACGTGTT 59.456 45.455 16.28 2.45 0.00 3.32
1607 1742 2.024176 TCCTCCCTTGTGCTACTTGA 57.976 50.000 0.00 0.00 0.00 3.02
1608 1743 2.551270 TCCTCCCTTGTGCTACTTGAT 58.449 47.619 0.00 0.00 0.00 2.57
1613 1748 4.579869 TCCCTTGTGCTACTTGATCTTTC 58.420 43.478 0.00 0.00 0.00 2.62
1615 1750 3.181516 CCTTGTGCTACTTGATCTTTCGC 60.182 47.826 0.00 0.00 0.00 4.70
1622 1757 0.391130 CTTGATCTTTCGCCCGTCCA 60.391 55.000 0.00 0.00 0.00 4.02
1625 1760 0.672401 GATCTTTCGCCCGTCCAACA 60.672 55.000 0.00 0.00 0.00 3.33
1627 1762 0.250553 TCTTTCGCCCGTCCAACATT 60.251 50.000 0.00 0.00 0.00 2.71
1638 1773 5.009610 GCCCGTCCAACATTATATCATTGTT 59.990 40.000 0.00 0.00 34.03 2.83
1720 1866 5.177696 AGTTGTTAATTTCTGTCTGACGCTC 59.822 40.000 2.98 0.00 0.00 5.03
1823 1975 5.491323 TTGGTTTGAGGTTTTGAAGGTTT 57.509 34.783 0.00 0.00 0.00 3.27
1828 1980 4.911514 TGAGGTTTTGAAGGTTTGCTAC 57.088 40.909 0.00 0.00 0.00 3.58
1854 2006 7.790823 CAAAAGATTGGTTTGAGGTTTTGAT 57.209 32.000 0.00 0.00 38.05 2.57
1855 2007 8.212317 CAAAAGATTGGTTTGAGGTTTTGATT 57.788 30.769 0.00 0.00 38.05 2.57
1856 2008 7.790823 AAAGATTGGTTTGAGGTTTTGATTG 57.209 32.000 0.00 0.00 0.00 2.67
1857 2009 5.299949 AGATTGGTTTGAGGTTTTGATTGC 58.700 37.500 0.00 0.00 0.00 3.56
1858 2010 3.467374 TGGTTTGAGGTTTTGATTGCC 57.533 42.857 0.00 0.00 0.00 4.52
1859 2011 2.768527 TGGTTTGAGGTTTTGATTGCCA 59.231 40.909 0.00 0.00 0.00 4.92
1860 2012 3.181467 TGGTTTGAGGTTTTGATTGCCAG 60.181 43.478 0.00 0.00 0.00 4.85
1861 2013 3.181466 GGTTTGAGGTTTTGATTGCCAGT 60.181 43.478 0.00 0.00 0.00 4.00
1862 2014 3.731652 TTGAGGTTTTGATTGCCAGTG 57.268 42.857 0.00 0.00 0.00 3.66
1863 2015 2.942804 TGAGGTTTTGATTGCCAGTGA 58.057 42.857 0.00 0.00 0.00 3.41
1864 2016 3.295093 TGAGGTTTTGATTGCCAGTGAA 58.705 40.909 0.00 0.00 0.00 3.18
1865 2017 3.896888 TGAGGTTTTGATTGCCAGTGAAT 59.103 39.130 0.00 0.00 0.00 2.57
1866 2018 4.344679 TGAGGTTTTGATTGCCAGTGAATT 59.655 37.500 0.00 0.00 0.00 2.17
1867 2019 4.634199 AGGTTTTGATTGCCAGTGAATTG 58.366 39.130 0.00 0.00 0.00 2.32
1868 2020 4.344679 AGGTTTTGATTGCCAGTGAATTGA 59.655 37.500 0.00 0.00 0.00 2.57
1869 2021 4.448732 GGTTTTGATTGCCAGTGAATTGAC 59.551 41.667 0.00 0.00 0.00 3.18
1870 2022 3.940209 TTGATTGCCAGTGAATTGACC 57.060 42.857 0.00 0.00 0.00 4.02
1871 2023 2.874014 TGATTGCCAGTGAATTGACCA 58.126 42.857 0.00 0.00 0.00 4.02
1872 2024 3.229293 TGATTGCCAGTGAATTGACCAA 58.771 40.909 0.00 0.00 0.00 3.67
1873 2025 3.005684 TGATTGCCAGTGAATTGACCAAC 59.994 43.478 0.00 0.00 0.00 3.77
1874 2026 2.064434 TGCCAGTGAATTGACCAACA 57.936 45.000 0.00 0.00 0.00 3.33
1875 2027 2.596346 TGCCAGTGAATTGACCAACAT 58.404 42.857 0.00 0.00 0.00 2.71
1876 2028 2.964464 TGCCAGTGAATTGACCAACATT 59.036 40.909 0.00 0.00 0.00 2.71
1877 2029 3.243805 TGCCAGTGAATTGACCAACATTG 60.244 43.478 0.00 0.00 0.00 2.82
1878 2030 3.005684 GCCAGTGAATTGACCAACATTGA 59.994 43.478 0.00 0.00 0.00 2.57
1879 2031 4.501229 GCCAGTGAATTGACCAACATTGAA 60.501 41.667 0.00 0.00 0.00 2.69
1880 2032 5.599732 CCAGTGAATTGACCAACATTGAAA 58.400 37.500 0.00 0.00 0.00 2.69
1881 2033 6.047870 CCAGTGAATTGACCAACATTGAAAA 58.952 36.000 0.00 0.00 0.00 2.29
1882 2034 6.538021 CCAGTGAATTGACCAACATTGAAAAA 59.462 34.615 0.00 0.00 0.00 1.94
1883 2035 7.254522 CCAGTGAATTGACCAACATTGAAAAAG 60.255 37.037 0.00 0.00 0.00 2.27
1884 2036 7.492020 CAGTGAATTGACCAACATTGAAAAAGA 59.508 33.333 0.00 0.00 0.00 2.52
1885 2037 8.040132 AGTGAATTGACCAACATTGAAAAAGAA 58.960 29.630 0.00 0.00 0.00 2.52
1886 2038 8.663911 GTGAATTGACCAACATTGAAAAAGAAA 58.336 29.630 0.00 0.00 0.00 2.52
1887 2039 9.224267 TGAATTGACCAACATTGAAAAAGAAAA 57.776 25.926 0.00 0.00 0.00 2.29
1888 2040 9.706846 GAATTGACCAACATTGAAAAAGAAAAG 57.293 29.630 0.00 0.00 0.00 2.27
1889 2041 9.447157 AATTGACCAACATTGAAAAAGAAAAGA 57.553 25.926 0.00 0.00 0.00 2.52
1890 2042 8.839310 TTGACCAACATTGAAAAAGAAAAGAA 57.161 26.923 0.00 0.00 0.00 2.52
1891 2043 8.250538 TGACCAACATTGAAAAAGAAAAGAAC 57.749 30.769 0.00 0.00 0.00 3.01
1892 2044 8.093927 TGACCAACATTGAAAAAGAAAAGAACT 58.906 29.630 0.00 0.00 0.00 3.01
1893 2045 9.581099 GACCAACATTGAAAAAGAAAAGAACTA 57.419 29.630 0.00 0.00 0.00 2.24
1894 2046 9.586435 ACCAACATTGAAAAAGAAAAGAACTAG 57.414 29.630 0.00 0.00 0.00 2.57
1895 2047 8.542953 CCAACATTGAAAAAGAAAAGAACTAGC 58.457 33.333 0.00 0.00 0.00 3.42
1896 2048 9.086336 CAACATTGAAAAAGAAAAGAACTAGCA 57.914 29.630 0.00 0.00 0.00 3.49
1897 2049 9.822185 AACATTGAAAAAGAAAAGAACTAGCAT 57.178 25.926 0.00 0.00 0.00 3.79
1898 2050 9.822185 ACATTGAAAAAGAAAAGAACTAGCATT 57.178 25.926 0.00 0.00 0.00 3.56
1922 2074 5.570234 TTTTGTTTTGCGGAACTAAGAGT 57.430 34.783 0.00 0.00 0.00 3.24
1923 2075 5.570234 TTTGTTTTGCGGAACTAAGAGTT 57.430 34.783 0.00 0.00 41.95 3.01
1924 2076 4.545823 TGTTTTGCGGAACTAAGAGTTG 57.454 40.909 0.00 0.00 38.80 3.16
1925 2077 3.314080 TGTTTTGCGGAACTAAGAGTTGG 59.686 43.478 0.00 0.00 38.80 3.77
1926 2078 2.922740 TTGCGGAACTAAGAGTTGGT 57.077 45.000 0.00 0.00 38.80 3.67
1927 2079 2.163818 TGCGGAACTAAGAGTTGGTG 57.836 50.000 0.00 0.00 38.80 4.17
1928 2080 1.689813 TGCGGAACTAAGAGTTGGTGA 59.310 47.619 0.00 0.00 38.80 4.02
1929 2081 2.301870 TGCGGAACTAAGAGTTGGTGAT 59.698 45.455 0.00 0.00 38.80 3.06
1930 2082 2.673368 GCGGAACTAAGAGTTGGTGATG 59.327 50.000 0.00 0.00 38.80 3.07
1931 2083 3.616560 GCGGAACTAAGAGTTGGTGATGA 60.617 47.826 0.00 0.00 38.80 2.92
1932 2084 4.759782 CGGAACTAAGAGTTGGTGATGAT 58.240 43.478 0.00 0.00 38.80 2.45
1933 2085 4.806247 CGGAACTAAGAGTTGGTGATGATC 59.194 45.833 0.00 0.00 38.80 2.92
1934 2086 5.394663 CGGAACTAAGAGTTGGTGATGATCT 60.395 44.000 0.00 0.00 38.80 2.75
1935 2087 5.814705 GGAACTAAGAGTTGGTGATGATCTG 59.185 44.000 0.00 0.00 38.80 2.90
1936 2088 6.351371 GGAACTAAGAGTTGGTGATGATCTGA 60.351 42.308 0.00 0.00 38.80 3.27
1937 2089 6.805016 ACTAAGAGTTGGTGATGATCTGAT 57.195 37.500 0.00 0.00 0.00 2.90
1938 2090 6.580788 ACTAAGAGTTGGTGATGATCTGATG 58.419 40.000 0.00 0.00 0.00 3.07
1939 2091 4.418973 AGAGTTGGTGATGATCTGATGG 57.581 45.455 0.00 0.00 0.00 3.51
1940 2092 4.035814 AGAGTTGGTGATGATCTGATGGA 58.964 43.478 0.00 0.00 0.00 3.41
1941 2093 4.125703 GAGTTGGTGATGATCTGATGGAC 58.874 47.826 0.00 0.00 0.00 4.02
1942 2094 3.520721 AGTTGGTGATGATCTGATGGACA 59.479 43.478 0.00 0.00 0.00 4.02
1943 2095 3.548745 TGGTGATGATCTGATGGACAC 57.451 47.619 0.00 2.40 0.00 3.67
1944 2096 3.109928 TGGTGATGATCTGATGGACACT 58.890 45.455 0.00 0.00 0.00 3.55
1945 2097 3.118519 TGGTGATGATCTGATGGACACTG 60.119 47.826 0.00 0.00 0.00 3.66
1946 2098 3.464907 GTGATGATCTGATGGACACTGG 58.535 50.000 0.00 0.00 0.00 4.00
1947 2099 2.158856 TGATGATCTGATGGACACTGGC 60.159 50.000 0.00 0.00 0.00 4.85
1948 2100 1.278537 TGATCTGATGGACACTGGCA 58.721 50.000 0.00 0.00 0.00 4.92
1949 2101 1.841919 TGATCTGATGGACACTGGCAT 59.158 47.619 0.00 0.00 0.00 4.40
1950 2102 2.240414 TGATCTGATGGACACTGGCATT 59.760 45.455 0.00 0.00 0.00 3.56
1951 2103 2.408271 TCTGATGGACACTGGCATTC 57.592 50.000 0.00 0.00 0.00 2.67
1952 2104 1.065199 TCTGATGGACACTGGCATTCC 60.065 52.381 0.00 0.00 0.00 3.01
1953 2105 0.697658 TGATGGACACTGGCATTCCA 59.302 50.000 13.27 13.27 43.60 3.53
1954 2106 1.075212 TGATGGACACTGGCATTCCAA 59.925 47.619 14.50 0.00 42.71 3.53
1955 2107 2.170166 GATGGACACTGGCATTCCAAA 58.830 47.619 14.50 0.00 42.71 3.28
1956 2108 2.079170 TGGACACTGGCATTCCAAAA 57.921 45.000 9.53 0.00 42.91 2.44
1957 2109 2.392662 TGGACACTGGCATTCCAAAAA 58.607 42.857 9.53 0.00 42.91 1.94
1978 2130 6.484364 AAAATTGAAACCAGAGACCAATGT 57.516 33.333 0.00 0.00 0.00 2.71
1979 2131 6.484364 AAATTGAAACCAGAGACCAATGTT 57.516 33.333 0.00 0.00 0.00 2.71
1980 2132 5.712152 ATTGAAACCAGAGACCAATGTTC 57.288 39.130 0.00 0.00 0.00 3.18
1981 2133 4.437682 TGAAACCAGAGACCAATGTTCT 57.562 40.909 0.00 0.00 0.00 3.01
1982 2134 4.136796 TGAAACCAGAGACCAATGTTCTG 58.863 43.478 0.00 0.00 38.41 3.02
1985 2137 1.457346 CAGAGACCAATGTTCTGGCC 58.543 55.000 0.00 0.00 40.45 5.36
1986 2138 1.067295 AGAGACCAATGTTCTGGCCA 58.933 50.000 4.71 4.71 40.45 5.36
1987 2139 1.004044 AGAGACCAATGTTCTGGCCAG 59.996 52.381 27.87 27.87 40.45 4.85
1988 2140 0.038744 AGACCAATGTTCTGGCCAGG 59.961 55.000 32.23 17.87 40.45 4.45
1989 2141 0.038166 GACCAATGTTCTGGCCAGGA 59.962 55.000 32.23 23.18 40.45 3.86
1990 2142 0.251341 ACCAATGTTCTGGCCAGGAC 60.251 55.000 34.09 34.09 40.45 3.85
1991 2143 0.967380 CCAATGTTCTGGCCAGGACC 60.967 60.000 36.44 22.39 36.06 4.46
1992 2144 0.251297 CAATGTTCTGGCCAGGACCA 60.251 55.000 36.44 26.61 36.06 4.02
1993 2145 0.482446 AATGTTCTGGCCAGGACCAA 59.518 50.000 36.44 22.55 39.86 3.67
1994 2146 0.482446 ATGTTCTGGCCAGGACCAAA 59.518 50.000 36.44 21.82 39.86 3.28
1995 2147 0.260230 TGTTCTGGCCAGGACCAAAA 59.740 50.000 36.44 18.86 39.86 2.44
1996 2148 1.342474 TGTTCTGGCCAGGACCAAAAA 60.342 47.619 36.44 18.48 39.86 1.94
1997 2149 1.970640 GTTCTGGCCAGGACCAAAAAT 59.029 47.619 31.43 0.00 39.86 1.82
1998 2150 2.368548 GTTCTGGCCAGGACCAAAAATT 59.631 45.455 31.43 0.00 39.86 1.82
1999 2151 2.688477 TCTGGCCAGGACCAAAAATTT 58.312 42.857 32.23 0.00 39.86 1.82
2000 2152 2.368221 TCTGGCCAGGACCAAAAATTTG 59.632 45.455 32.23 2.40 39.86 2.32
2012 2164 4.599047 CAAAAATTTGGCAGGGTAGACA 57.401 40.909 0.00 0.00 34.59 3.41
2013 2165 5.151297 CAAAAATTTGGCAGGGTAGACAT 57.849 39.130 0.00 0.00 34.59 3.06
2014 2166 5.550290 CAAAAATTTGGCAGGGTAGACATT 58.450 37.500 0.00 0.00 34.59 2.71
2015 2167 4.806640 AAATTTGGCAGGGTAGACATTG 57.193 40.909 0.00 0.00 0.00 2.82
2016 2168 2.214376 TTTGGCAGGGTAGACATTGG 57.786 50.000 0.00 0.00 0.00 3.16
2017 2169 1.072266 TTGGCAGGGTAGACATTGGT 58.928 50.000 0.00 0.00 0.00 3.67
2018 2170 0.327924 TGGCAGGGTAGACATTGGTG 59.672 55.000 0.00 0.00 0.00 4.17
2019 2171 0.394352 GGCAGGGTAGACATTGGTGG 60.394 60.000 0.00 0.00 0.00 4.61
2020 2172 1.032114 GCAGGGTAGACATTGGTGGC 61.032 60.000 0.00 0.00 0.00 5.01
2021 2173 0.327924 CAGGGTAGACATTGGTGGCA 59.672 55.000 0.00 0.00 35.06 4.92
2022 2174 1.072266 AGGGTAGACATTGGTGGCAA 58.928 50.000 0.00 0.00 35.06 4.52
2023 2175 1.640670 AGGGTAGACATTGGTGGCAAT 59.359 47.619 0.00 0.00 35.06 3.56
2024 2176 2.024414 GGGTAGACATTGGTGGCAATC 58.976 52.381 0.00 0.00 35.06 2.67
2025 2177 2.024414 GGTAGACATTGGTGGCAATCC 58.976 52.381 0.00 0.00 35.06 3.01
2026 2178 2.024414 GTAGACATTGGTGGCAATCCC 58.976 52.381 0.00 0.00 35.06 3.85
2027 2179 0.409092 AGACATTGGTGGCAATCCCA 59.591 50.000 0.00 0.00 42.79 4.37
2036 2188 0.755686 TGGCAATCCCAAACACAACC 59.244 50.000 0.00 0.00 41.82 3.77
2037 2189 0.755686 GGCAATCCCAAACACAACCA 59.244 50.000 0.00 0.00 0.00 3.67
2038 2190 1.139853 GGCAATCCCAAACACAACCAA 59.860 47.619 0.00 0.00 0.00 3.67
2039 2191 2.420687 GGCAATCCCAAACACAACCAAA 60.421 45.455 0.00 0.00 0.00 3.28
2040 2192 3.475575 GCAATCCCAAACACAACCAAAT 58.524 40.909 0.00 0.00 0.00 2.32
2041 2193 3.250521 GCAATCCCAAACACAACCAAATG 59.749 43.478 0.00 0.00 0.00 2.32
2042 2194 4.450053 CAATCCCAAACACAACCAAATGT 58.550 39.130 0.00 0.00 0.00 2.71
2043 2195 3.810310 TCCCAAACACAACCAAATGTC 57.190 42.857 0.00 0.00 0.00 3.06
2044 2196 2.432510 TCCCAAACACAACCAAATGTCC 59.567 45.455 0.00 0.00 0.00 4.02
2045 2197 2.468831 CCAAACACAACCAAATGTCCG 58.531 47.619 0.00 0.00 0.00 4.79
2046 2198 2.099921 CCAAACACAACCAAATGTCCGA 59.900 45.455 0.00 0.00 0.00 4.55
2047 2199 3.429547 CCAAACACAACCAAATGTCCGAA 60.430 43.478 0.00 0.00 0.00 4.30
2048 2200 4.367450 CAAACACAACCAAATGTCCGAAT 58.633 39.130 0.00 0.00 0.00 3.34
2049 2201 5.508153 CCAAACACAACCAAATGTCCGAATA 60.508 40.000 0.00 0.00 0.00 1.75
2050 2202 5.371115 AACACAACCAAATGTCCGAATAG 57.629 39.130 0.00 0.00 0.00 1.73
2051 2203 4.647611 ACACAACCAAATGTCCGAATAGA 58.352 39.130 0.00 0.00 0.00 1.98
2052 2204 5.253330 ACACAACCAAATGTCCGAATAGAT 58.747 37.500 0.00 0.00 0.00 1.98
2053 2205 5.710099 ACACAACCAAATGTCCGAATAGATT 59.290 36.000 0.00 0.00 0.00 2.40
2054 2206 6.208599 ACACAACCAAATGTCCGAATAGATTT 59.791 34.615 0.00 0.00 0.00 2.17
2055 2207 7.090173 CACAACCAAATGTCCGAATAGATTTT 58.910 34.615 0.00 0.00 0.00 1.82
2056 2208 7.598493 CACAACCAAATGTCCGAATAGATTTTT 59.402 33.333 0.00 0.00 0.00 1.94
2057 2209 8.798402 ACAACCAAATGTCCGAATAGATTTTTA 58.202 29.630 0.00 0.00 0.00 1.52
2058 2210 9.801873 CAACCAAATGTCCGAATAGATTTTTAT 57.198 29.630 0.00 0.00 0.00 1.40
2075 2227 9.920946 AGATTTTTATTATTTCAGCAGGGTAGA 57.079 29.630 0.00 0.00 0.00 2.59
2076 2228 9.952188 GATTTTTATTATTTCAGCAGGGTAGAC 57.048 33.333 0.00 0.00 0.00 2.59
2077 2229 8.871629 TTTTTATTATTTCAGCAGGGTAGACA 57.128 30.769 0.00 0.00 0.00 3.41
2078 2230 9.474313 TTTTTATTATTTCAGCAGGGTAGACAT 57.526 29.630 0.00 0.00 0.00 3.06
2079 2231 9.474313 TTTTATTATTTCAGCAGGGTAGACATT 57.526 29.630 0.00 0.00 0.00 2.71
2080 2232 6.949352 ATTATTTCAGCAGGGTAGACATTG 57.051 37.500 0.00 0.00 0.00 2.82
2081 2233 2.787473 TTCAGCAGGGTAGACATTGG 57.213 50.000 0.00 0.00 0.00 3.16
2082 2234 1.656587 TCAGCAGGGTAGACATTGGT 58.343 50.000 0.00 0.00 0.00 3.67
2083 2235 1.278985 TCAGCAGGGTAGACATTGGTG 59.721 52.381 7.93 7.93 39.64 4.17
2084 2236 0.620556 AGCAGGGTAGACATTGGTGG 59.379 55.000 0.00 0.00 0.00 4.61
2085 2237 1.032114 GCAGGGTAGACATTGGTGGC 61.032 60.000 0.00 0.00 0.00 5.01
2086 2238 0.327924 CAGGGTAGACATTGGTGGCA 59.672 55.000 0.00 0.00 35.06 4.92
2087 2239 1.072266 AGGGTAGACATTGGTGGCAA 58.928 50.000 0.00 0.00 35.06 4.52
2088 2240 1.640670 AGGGTAGACATTGGTGGCAAT 59.359 47.619 0.00 0.00 35.06 3.56
2089 2241 2.024414 GGGTAGACATTGGTGGCAATC 58.976 52.381 0.00 0.00 35.06 2.67
2090 2242 2.024414 GGTAGACATTGGTGGCAATCC 58.976 52.381 0.00 0.00 35.06 3.01
2091 2243 2.024414 GTAGACATTGGTGGCAATCCC 58.976 52.381 0.00 0.00 35.06 3.85
2092 2244 0.409092 AGACATTGGTGGCAATCCCA 59.591 50.000 0.00 0.00 42.79 4.37
2101 2253 0.755686 TGGCAATCCCAAACACAACC 59.244 50.000 0.00 0.00 41.82 3.77
2102 2254 0.755686 GGCAATCCCAAACACAACCA 59.244 50.000 0.00 0.00 0.00 3.67
2103 2255 1.139853 GGCAATCCCAAACACAACCAA 59.860 47.619 0.00 0.00 0.00 3.67
2104 2256 2.420687 GGCAATCCCAAACACAACCAAA 60.421 45.455 0.00 0.00 0.00 3.28
2105 2257 3.475575 GCAATCCCAAACACAACCAAAT 58.524 40.909 0.00 0.00 0.00 2.32
2106 2258 3.250521 GCAATCCCAAACACAACCAAATG 59.749 43.478 0.00 0.00 0.00 2.32
2107 2259 4.450053 CAATCCCAAACACAACCAAATGT 58.550 39.130 0.00 0.00 0.00 2.71
2108 2260 3.810310 TCCCAAACACAACCAAATGTC 57.190 42.857 0.00 0.00 0.00 3.06
2109 2261 2.432510 TCCCAAACACAACCAAATGTCC 59.567 45.455 0.00 0.00 0.00 4.02
2110 2262 2.468831 CCAAACACAACCAAATGTCCG 58.531 47.619 0.00 0.00 0.00 4.79
2111 2263 2.099921 CCAAACACAACCAAATGTCCGA 59.900 45.455 0.00 0.00 0.00 4.55
2112 2264 3.429547 CCAAACACAACCAAATGTCCGAA 60.430 43.478 0.00 0.00 0.00 4.30
2113 2265 4.367450 CAAACACAACCAAATGTCCGAAT 58.633 39.130 0.00 0.00 0.00 3.34
2114 2266 5.508153 CCAAACACAACCAAATGTCCGAATA 60.508 40.000 0.00 0.00 0.00 1.75
2115 2267 5.371115 AACACAACCAAATGTCCGAATAG 57.629 39.130 0.00 0.00 0.00 1.73
2116 2268 4.647611 ACACAACCAAATGTCCGAATAGA 58.352 39.130 0.00 0.00 0.00 1.98
2117 2269 5.253330 ACACAACCAAATGTCCGAATAGAT 58.747 37.500 0.00 0.00 0.00 1.98
2118 2270 5.710099 ACACAACCAAATGTCCGAATAGATT 59.290 36.000 0.00 0.00 0.00 2.40
2119 2271 6.208599 ACACAACCAAATGTCCGAATAGATTT 59.791 34.615 0.00 0.00 0.00 2.17
2120 2272 7.090173 CACAACCAAATGTCCGAATAGATTTT 58.910 34.615 0.00 0.00 0.00 1.82
2121 2273 7.598493 CACAACCAAATGTCCGAATAGATTTTT 59.402 33.333 0.00 0.00 0.00 1.94
2122 2274 8.798402 ACAACCAAATGTCCGAATAGATTTTTA 58.202 29.630 0.00 0.00 0.00 1.52
2123 2275 9.801873 CAACCAAATGTCCGAATAGATTTTTAT 57.198 29.630 0.00 0.00 0.00 1.40
2148 2300 6.743575 ATTTCTGATGTTAGTTGTACTGCC 57.256 37.500 0.00 0.00 0.00 4.85
2149 2301 4.882842 TCTGATGTTAGTTGTACTGCCA 57.117 40.909 0.00 0.00 0.00 4.92
2150 2302 5.420725 TCTGATGTTAGTTGTACTGCCAT 57.579 39.130 0.00 0.00 0.00 4.40
2151 2303 5.419542 TCTGATGTTAGTTGTACTGCCATC 58.580 41.667 0.00 10.87 37.26 3.51
2152 2304 4.180817 TGATGTTAGTTGTACTGCCATCG 58.819 43.478 0.00 0.00 38.44 3.84
2153 2305 3.671008 TGTTAGTTGTACTGCCATCGT 57.329 42.857 0.00 0.00 0.00 3.73
2154 2306 3.997762 TGTTAGTTGTACTGCCATCGTT 58.002 40.909 0.00 0.00 0.00 3.85
2155 2307 5.136816 TGTTAGTTGTACTGCCATCGTTA 57.863 39.130 0.00 0.00 0.00 3.18
2156 2308 5.539979 TGTTAGTTGTACTGCCATCGTTAA 58.460 37.500 0.00 0.00 0.00 2.01
2157 2309 5.990386 TGTTAGTTGTACTGCCATCGTTAAA 59.010 36.000 0.00 0.00 0.00 1.52
2158 2310 6.651643 TGTTAGTTGTACTGCCATCGTTAAAT 59.348 34.615 0.00 0.00 0.00 1.40
2159 2311 5.545658 AGTTGTACTGCCATCGTTAAATG 57.454 39.130 0.00 0.00 0.00 2.32
2180 2332 8.638685 AAATGGATAGATCAAAAATTTGCTCG 57.361 30.769 0.00 0.00 38.10 5.03
2181 2333 6.135290 TGGATAGATCAAAAATTTGCTCGG 57.865 37.500 0.00 0.00 38.10 4.63
2182 2334 5.067674 TGGATAGATCAAAAATTTGCTCGGG 59.932 40.000 0.00 0.00 38.10 5.14
2183 2335 5.299279 GGATAGATCAAAAATTTGCTCGGGA 59.701 40.000 0.00 0.00 38.10 5.14
2184 2336 6.183360 GGATAGATCAAAAATTTGCTCGGGAA 60.183 38.462 0.00 0.00 38.10 3.97
2185 2337 5.467035 AGATCAAAAATTTGCTCGGGAAA 57.533 34.783 0.00 0.00 38.10 3.13
2186 2338 5.852827 AGATCAAAAATTTGCTCGGGAAAA 58.147 33.333 0.00 0.00 38.10 2.29
2187 2339 6.287525 AGATCAAAAATTTGCTCGGGAAAAA 58.712 32.000 0.00 0.00 38.10 1.94
2210 2362 9.737844 AAAAATAATGCCAATCACAACCTAAAT 57.262 25.926 0.00 0.00 0.00 1.40
2211 2363 8.721019 AAATAATGCCAATCACAACCTAAATG 57.279 30.769 0.00 0.00 0.00 2.32
2212 2364 5.743636 AATGCCAATCACAACCTAAATGT 57.256 34.783 0.00 0.00 0.00 2.71
2213 2365 4.782019 TGCCAATCACAACCTAAATGTC 57.218 40.909 0.00 0.00 0.00 3.06
2214 2366 3.509575 TGCCAATCACAACCTAAATGTCC 59.490 43.478 0.00 0.00 0.00 4.02
2215 2367 3.427503 GCCAATCACAACCTAAATGTCCG 60.428 47.826 0.00 0.00 0.00 4.79
2216 2368 4.006989 CCAATCACAACCTAAATGTCCGA 58.993 43.478 0.00 0.00 0.00 4.55
2217 2369 4.457603 CCAATCACAACCTAAATGTCCGAA 59.542 41.667 0.00 0.00 0.00 4.30
2218 2370 5.048364 CCAATCACAACCTAAATGTCCGAAA 60.048 40.000 0.00 0.00 0.00 3.46
2219 2371 5.622770 ATCACAACCTAAATGTCCGAAAC 57.377 39.130 0.00 0.00 0.00 2.78
2220 2372 3.816523 TCACAACCTAAATGTCCGAAACC 59.183 43.478 0.00 0.00 0.00 3.27
2221 2373 3.566322 CACAACCTAAATGTCCGAAACCA 59.434 43.478 0.00 0.00 0.00 3.67
2222 2374 4.036971 CACAACCTAAATGTCCGAAACCAA 59.963 41.667 0.00 0.00 0.00 3.67
2223 2375 4.645588 ACAACCTAAATGTCCGAAACCAAA 59.354 37.500 0.00 0.00 0.00 3.28
2224 2376 4.841443 ACCTAAATGTCCGAAACCAAAC 57.159 40.909 0.00 0.00 0.00 2.93
2225 2377 3.570975 ACCTAAATGTCCGAAACCAAACC 59.429 43.478 0.00 0.00 0.00 3.27
2226 2378 3.570550 CCTAAATGTCCGAAACCAAACCA 59.429 43.478 0.00 0.00 0.00 3.67
2227 2379 4.038162 CCTAAATGTCCGAAACCAAACCAA 59.962 41.667 0.00 0.00 0.00 3.67
2228 2380 4.473477 AAATGTCCGAAACCAAACCAAA 57.527 36.364 0.00 0.00 0.00 3.28
2229 2381 2.943449 TGTCCGAAACCAAACCAAAC 57.057 45.000 0.00 0.00 0.00 2.93
2230 2382 1.132643 TGTCCGAAACCAAACCAAACG 59.867 47.619 0.00 0.00 0.00 3.60
2231 2383 0.739561 TCCGAAACCAAACCAAACGG 59.260 50.000 0.00 0.00 40.16 4.44
2232 2384 0.456628 CCGAAACCAAACCAAACGGT 59.543 50.000 0.00 0.00 38.95 4.83
2243 2395 4.841443 AACCAAACGGTTTATTCCTGTC 57.159 40.909 5.69 0.00 44.73 3.51
2244 2396 4.094830 ACCAAACGGTTTATTCCTGTCT 57.905 40.909 5.69 0.00 30.22 3.41
2245 2397 4.466827 ACCAAACGGTTTATTCCTGTCTT 58.533 39.130 5.69 0.00 30.22 3.01
2246 2398 4.517832 ACCAAACGGTTTATTCCTGTCTTC 59.482 41.667 5.69 0.00 30.22 2.87
2247 2399 4.760204 CCAAACGGTTTATTCCTGTCTTCT 59.240 41.667 5.69 0.00 0.00 2.85
2248 2400 5.935789 CCAAACGGTTTATTCCTGTCTTCTA 59.064 40.000 5.69 0.00 0.00 2.10
2249 2401 6.428771 CCAAACGGTTTATTCCTGTCTTCTAA 59.571 38.462 5.69 0.00 0.00 2.10
2250 2402 7.120726 CCAAACGGTTTATTCCTGTCTTCTAAT 59.879 37.037 5.69 0.00 0.00 1.73
2251 2403 8.512138 CAAACGGTTTATTCCTGTCTTCTAATT 58.488 33.333 5.69 0.00 0.00 1.40
2252 2404 8.631480 AACGGTTTATTCCTGTCTTCTAATTT 57.369 30.769 0.00 0.00 0.00 1.82
2253 2405 8.631480 ACGGTTTATTCCTGTCTTCTAATTTT 57.369 30.769 0.00 0.00 0.00 1.82
2254 2406 9.074576 ACGGTTTATTCCTGTCTTCTAATTTTT 57.925 29.630 0.00 0.00 0.00 1.94
2255 2407 9.556030 CGGTTTATTCCTGTCTTCTAATTTTTC 57.444 33.333 0.00 0.00 0.00 2.29
2259 2411 9.938280 TTATTCCTGTCTTCTAATTTTTCTCGA 57.062 29.630 0.00 0.00 0.00 4.04
2260 2412 7.891183 TTCCTGTCTTCTAATTTTTCTCGAG 57.109 36.000 5.93 5.93 0.00 4.04
2261 2413 6.398918 TCCTGTCTTCTAATTTTTCTCGAGG 58.601 40.000 13.56 0.00 0.00 4.63
2262 2414 5.064071 CCTGTCTTCTAATTTTTCTCGAGGC 59.936 44.000 13.56 0.00 0.00 4.70
2263 2415 5.547465 TGTCTTCTAATTTTTCTCGAGGCA 58.453 37.500 13.56 0.00 0.00 4.75
2264 2416 6.173339 TGTCTTCTAATTTTTCTCGAGGCAT 58.827 36.000 13.56 0.00 0.00 4.40
2265 2417 7.327975 TGTCTTCTAATTTTTCTCGAGGCATA 58.672 34.615 13.56 0.00 0.00 3.14
2266 2418 7.987458 TGTCTTCTAATTTTTCTCGAGGCATAT 59.013 33.333 13.56 0.00 0.00 1.78
2267 2419 8.831550 GTCTTCTAATTTTTCTCGAGGCATATT 58.168 33.333 13.56 10.15 0.00 1.28
2268 2420 9.046296 TCTTCTAATTTTTCTCGAGGCATATTC 57.954 33.333 13.56 0.00 0.00 1.75
2269 2421 8.964476 TTCTAATTTTTCTCGAGGCATATTCT 57.036 30.769 13.56 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.731691 TTCTCGTGTTCCCAGGCTGC 62.732 60.000 9.56 0.00 0.00 5.25
17 18 0.671781 CTTCTCGTGTTCCCAGGCTG 60.672 60.000 7.75 7.75 0.00 4.85
18 19 1.674057 CTTCTCGTGTTCCCAGGCT 59.326 57.895 0.00 0.00 0.00 4.58
21 22 0.605589 AGAGCTTCTCGTGTTCCCAG 59.394 55.000 0.00 0.00 35.36 4.45
25 26 1.347817 CGGCAGAGCTTCTCGTGTTC 61.348 60.000 0.00 0.00 35.36 3.18
56 57 0.178767 TTGACACACACAGCTGCTCT 59.821 50.000 15.27 0.00 0.00 4.09
222 224 1.198713 GGAACTGGAGAGATGGAGCA 58.801 55.000 0.00 0.00 0.00 4.26
246 257 7.982252 AGCATTGATTTATCTCTGGGAGAATA 58.018 34.615 1.26 0.00 42.27 1.75
282 306 3.146066 CATTGACCTCCCTCACGAAAAA 58.854 45.455 0.00 0.00 0.00 1.94
283 307 2.778299 CATTGACCTCCCTCACGAAAA 58.222 47.619 0.00 0.00 0.00 2.29
284 308 1.610624 GCATTGACCTCCCTCACGAAA 60.611 52.381 0.00 0.00 0.00 3.46
285 309 0.036388 GCATTGACCTCCCTCACGAA 60.036 55.000 0.00 0.00 0.00 3.85
286 310 0.904865 AGCATTGACCTCCCTCACGA 60.905 55.000 0.00 0.00 0.00 4.35
287 311 0.036010 AAGCATTGACCTCCCTCACG 60.036 55.000 0.00 0.00 0.00 4.35
288 312 3.965888 AAGCATTGACCTCCCTCAC 57.034 52.632 0.00 0.00 0.00 3.51
375 409 4.094684 CGAAGGGTCACATCGCTC 57.905 61.111 0.00 0.00 0.00 5.03
395 489 1.470112 CCCCGTTTTGTTCTTTGCGTT 60.470 47.619 0.00 0.00 0.00 4.84
411 505 4.871557 TCCGCGAAATATATTTATTCCCCG 59.128 41.667 8.23 9.84 0.00 5.73
452 555 1.611491 GGACCAAGACGCCAATCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
459 562 2.652530 GTACGGACCAAGACGCCA 59.347 61.111 0.00 0.00 0.00 5.69
462 565 1.154150 GACCGTACGGACCAAGACG 60.154 63.158 39.52 11.03 38.96 4.18
479 583 0.107410 AGAAAACCACTGCACACCGA 60.107 50.000 0.00 0.00 0.00 4.69
529 634 0.815615 GACCGCCAGGAATGGATCAC 60.816 60.000 0.00 0.00 41.02 3.06
679 788 4.847444 GAGGAAGCGAGGCCAGGC 62.847 72.222 5.01 1.26 0.00 4.85
680 789 3.393970 TGAGGAAGCGAGGCCAGG 61.394 66.667 5.01 0.00 0.00 4.45
707 816 3.818787 GGCGAGACGGGTAAGCGA 61.819 66.667 0.00 0.00 0.00 4.93
755 864 2.224185 TGTGACTTACGCCATGAACTGT 60.224 45.455 0.00 0.00 0.00 3.55
773 882 4.133820 TGGGATTGTGTACTGACTTTGTG 58.866 43.478 0.00 0.00 0.00 3.33
775 884 4.641396 TCTGGGATTGTGTACTGACTTTG 58.359 43.478 0.00 0.00 0.00 2.77
776 885 4.804261 GCTCTGGGATTGTGTACTGACTTT 60.804 45.833 0.00 0.00 0.00 2.66
778 887 2.234908 GCTCTGGGATTGTGTACTGACT 59.765 50.000 0.00 0.00 0.00 3.41
779 888 2.622436 GCTCTGGGATTGTGTACTGAC 58.378 52.381 0.00 0.00 0.00 3.51
780 889 1.555075 GGCTCTGGGATTGTGTACTGA 59.445 52.381 0.00 0.00 0.00 3.41
781 890 1.740380 CGGCTCTGGGATTGTGTACTG 60.740 57.143 0.00 0.00 0.00 2.74
782 891 0.537188 CGGCTCTGGGATTGTGTACT 59.463 55.000 0.00 0.00 0.00 2.73
783 892 1.090052 GCGGCTCTGGGATTGTGTAC 61.090 60.000 0.00 0.00 0.00 2.90
784 893 1.220749 GCGGCTCTGGGATTGTGTA 59.779 57.895 0.00 0.00 0.00 2.90
785 894 2.045926 GCGGCTCTGGGATTGTGT 60.046 61.111 0.00 0.00 0.00 3.72
786 895 3.197790 CGCGGCTCTGGGATTGTG 61.198 66.667 0.00 0.00 0.00 3.33
910 1019 3.287222 ACAAGCTACCAAGAACAAGCAA 58.713 40.909 0.00 0.00 37.44 3.91
971 1084 2.940410 GGACTGTCTTCTCCTAGACTCG 59.060 54.545 7.85 0.00 43.92 4.18
993 1106 1.499438 ACCTCCACCTCCATATCTCGA 59.501 52.381 0.00 0.00 0.00 4.04
998 1111 1.410850 CGGCACCTCCACCTCCATAT 61.411 60.000 0.00 0.00 34.01 1.78
1308 1429 4.083565 GGCTAGTGTCTATTCCCTAGGAG 58.916 52.174 11.48 0.00 31.21 3.69
1309 1430 3.465966 TGGCTAGTGTCTATTCCCTAGGA 59.534 47.826 11.48 0.00 0.00 2.94
1322 1443 0.620556 CCAACATCCCTGGCTAGTGT 59.379 55.000 0.00 0.00 0.00 3.55
1427 1549 4.584325 ACAAAAGCAGCATTCTTCTTGGTA 59.416 37.500 0.00 0.00 0.00 3.25
1447 1573 1.529796 GAGGGGGACACACACACAA 59.470 57.895 0.00 0.00 0.00 3.33
1494 1622 4.079901 CCTACTCCTACTCTCCCAACTACA 60.080 50.000 0.00 0.00 0.00 2.74
1558 1692 3.493129 TGCAAGAACATCTACACGAACAC 59.507 43.478 0.00 0.00 0.00 3.32
1559 1693 3.723260 TGCAAGAACATCTACACGAACA 58.277 40.909 0.00 0.00 0.00 3.18
1560 1694 4.725556 TTGCAAGAACATCTACACGAAC 57.274 40.909 0.00 0.00 0.00 3.95
1561 1695 5.743026 TTTTGCAAGAACATCTACACGAA 57.257 34.783 0.00 0.00 0.00 3.85
1562 1696 5.743026 TTTTTGCAAGAACATCTACACGA 57.257 34.783 0.00 0.00 0.00 4.35
1607 1742 0.035439 ATGTTGGACGGGCGAAAGAT 60.035 50.000 0.00 0.00 0.00 2.40
1608 1743 0.250553 AATGTTGGACGGGCGAAAGA 60.251 50.000 0.00 0.00 0.00 2.52
1613 1748 2.761559 TGATATAATGTTGGACGGGCG 58.238 47.619 0.00 0.00 0.00 6.13
1615 1750 6.633500 AACAATGATATAATGTTGGACGGG 57.367 37.500 0.00 0.00 36.03 5.28
1683 1827 9.522804 AGAAATTAACAACTGCGTTCATTTAAA 57.477 25.926 0.00 0.00 34.46 1.52
1689 1833 5.295787 AGACAGAAATTAACAACTGCGTTCA 59.704 36.000 0.00 0.00 34.25 3.18
1695 1839 5.050091 AGCGTCAGACAGAAATTAACAACTG 60.050 40.000 0.41 0.00 36.58 3.16
1703 1847 2.329379 GACGAGCGTCAGACAGAAATT 58.671 47.619 17.21 0.00 44.02 1.82
1720 1866 0.798776 GGTCATGGAAGCAACTGACG 59.201 55.000 0.00 0.00 39.08 4.35
1745 1891 4.699637 ACCTTCGACACAAACAGAACATA 58.300 39.130 0.00 0.00 0.00 2.29
1807 1954 3.634910 GGTAGCAAACCTTCAAAACCTCA 59.365 43.478 1.14 0.00 45.75 3.86
1847 1999 4.448732 GGTCAATTCACTGGCAATCAAAAC 59.551 41.667 0.00 0.00 0.00 2.43
1851 2003 2.874014 TGGTCAATTCACTGGCAATCA 58.126 42.857 0.00 0.00 0.00 2.57
1852 2004 3.005684 TGTTGGTCAATTCACTGGCAATC 59.994 43.478 0.00 0.00 0.00 2.67
1853 2005 2.964464 TGTTGGTCAATTCACTGGCAAT 59.036 40.909 0.00 0.00 0.00 3.56
1854 2006 2.382882 TGTTGGTCAATTCACTGGCAA 58.617 42.857 0.00 0.00 0.00 4.52
1855 2007 2.064434 TGTTGGTCAATTCACTGGCA 57.936 45.000 0.00 0.00 0.00 4.92
1856 2008 3.005684 TCAATGTTGGTCAATTCACTGGC 59.994 43.478 0.00 0.00 0.00 4.85
1857 2009 4.852134 TCAATGTTGGTCAATTCACTGG 57.148 40.909 0.00 0.00 0.00 4.00
1858 2010 7.492020 TCTTTTTCAATGTTGGTCAATTCACTG 59.508 33.333 0.00 0.00 0.00 3.66
1859 2011 7.555087 TCTTTTTCAATGTTGGTCAATTCACT 58.445 30.769 0.00 0.00 0.00 3.41
1860 2012 7.769272 TCTTTTTCAATGTTGGTCAATTCAC 57.231 32.000 0.00 0.00 0.00 3.18
1861 2013 8.783833 TTTCTTTTTCAATGTTGGTCAATTCA 57.216 26.923 0.00 0.00 0.00 2.57
1862 2014 9.706846 CTTTTCTTTTTCAATGTTGGTCAATTC 57.293 29.630 0.00 0.00 0.00 2.17
1863 2015 9.447157 TCTTTTCTTTTTCAATGTTGGTCAATT 57.553 25.926 0.00 0.00 0.00 2.32
1864 2016 9.447157 TTCTTTTCTTTTTCAATGTTGGTCAAT 57.553 25.926 0.00 0.00 0.00 2.57
1865 2017 8.716909 GTTCTTTTCTTTTTCAATGTTGGTCAA 58.283 29.630 0.00 0.00 0.00 3.18
1866 2018 8.093927 AGTTCTTTTCTTTTTCAATGTTGGTCA 58.906 29.630 0.00 0.00 0.00 4.02
1867 2019 8.479313 AGTTCTTTTCTTTTTCAATGTTGGTC 57.521 30.769 0.00 0.00 0.00 4.02
1868 2020 9.586435 CTAGTTCTTTTCTTTTTCAATGTTGGT 57.414 29.630 0.00 0.00 0.00 3.67
1869 2021 8.542953 GCTAGTTCTTTTCTTTTTCAATGTTGG 58.457 33.333 0.00 0.00 0.00 3.77
1870 2022 9.086336 TGCTAGTTCTTTTCTTTTTCAATGTTG 57.914 29.630 0.00 0.00 0.00 3.33
1871 2023 9.822185 ATGCTAGTTCTTTTCTTTTTCAATGTT 57.178 25.926 0.00 0.00 0.00 2.71
1872 2024 9.822185 AATGCTAGTTCTTTTCTTTTTCAATGT 57.178 25.926 0.00 0.00 0.00 2.71
1899 2051 5.956642 ACTCTTAGTTCCGCAAAACAAAAA 58.043 33.333 1.53 0.00 0.00 1.94
1900 2052 5.570234 ACTCTTAGTTCCGCAAAACAAAA 57.430 34.783 1.53 0.00 0.00 2.44
1901 2053 5.336744 CAACTCTTAGTTCCGCAAAACAAA 58.663 37.500 1.53 0.00 36.03 2.83
1902 2054 4.201970 CCAACTCTTAGTTCCGCAAAACAA 60.202 41.667 1.53 0.00 36.03 2.83
1903 2055 3.314080 CCAACTCTTAGTTCCGCAAAACA 59.686 43.478 1.53 0.00 36.03 2.83
1904 2056 3.314357 ACCAACTCTTAGTTCCGCAAAAC 59.686 43.478 0.00 0.00 36.03 2.43
1905 2057 3.314080 CACCAACTCTTAGTTCCGCAAAA 59.686 43.478 0.00 0.00 36.03 2.44
1906 2058 2.875933 CACCAACTCTTAGTTCCGCAAA 59.124 45.455 0.00 0.00 36.03 3.68
1907 2059 2.103432 TCACCAACTCTTAGTTCCGCAA 59.897 45.455 0.00 0.00 36.03 4.85
1908 2060 1.689813 TCACCAACTCTTAGTTCCGCA 59.310 47.619 0.00 0.00 36.03 5.69
1909 2061 2.450609 TCACCAACTCTTAGTTCCGC 57.549 50.000 0.00 0.00 36.03 5.54
1910 2062 4.188247 TCATCACCAACTCTTAGTTCCG 57.812 45.455 0.00 0.00 36.03 4.30
1911 2063 5.814705 CAGATCATCACCAACTCTTAGTTCC 59.185 44.000 0.00 0.00 36.03 3.62
1912 2064 6.634805 TCAGATCATCACCAACTCTTAGTTC 58.365 40.000 0.00 0.00 36.03 3.01
1913 2065 6.611613 TCAGATCATCACCAACTCTTAGTT 57.388 37.500 0.00 0.00 39.39 2.24
1914 2066 6.407865 CCATCAGATCATCACCAACTCTTAGT 60.408 42.308 0.00 0.00 0.00 2.24
1915 2067 5.990386 CCATCAGATCATCACCAACTCTTAG 59.010 44.000 0.00 0.00 0.00 2.18
1916 2068 5.662657 TCCATCAGATCATCACCAACTCTTA 59.337 40.000 0.00 0.00 0.00 2.10
1917 2069 4.472470 TCCATCAGATCATCACCAACTCTT 59.528 41.667 0.00 0.00 0.00 2.85
1918 2070 4.035814 TCCATCAGATCATCACCAACTCT 58.964 43.478 0.00 0.00 0.00 3.24
1919 2071 4.125703 GTCCATCAGATCATCACCAACTC 58.874 47.826 0.00 0.00 0.00 3.01
1920 2072 3.520721 TGTCCATCAGATCATCACCAACT 59.479 43.478 0.00 0.00 0.00 3.16
1921 2073 3.624861 GTGTCCATCAGATCATCACCAAC 59.375 47.826 0.00 0.00 0.00 3.77
1922 2074 3.520721 AGTGTCCATCAGATCATCACCAA 59.479 43.478 0.00 0.00 0.00 3.67
1923 2075 3.109928 AGTGTCCATCAGATCATCACCA 58.890 45.455 0.00 0.00 0.00 4.17
1924 2076 3.464907 CAGTGTCCATCAGATCATCACC 58.535 50.000 0.00 0.00 0.00 4.02
1925 2077 3.464907 CCAGTGTCCATCAGATCATCAC 58.535 50.000 0.00 0.00 0.00 3.06
1926 2078 2.158856 GCCAGTGTCCATCAGATCATCA 60.159 50.000 0.00 0.00 0.00 3.07
1927 2079 2.158856 TGCCAGTGTCCATCAGATCATC 60.159 50.000 0.00 0.00 0.00 2.92
1928 2080 1.841919 TGCCAGTGTCCATCAGATCAT 59.158 47.619 0.00 0.00 0.00 2.45
1929 2081 1.278537 TGCCAGTGTCCATCAGATCA 58.721 50.000 0.00 0.00 0.00 2.92
1930 2082 2.634815 ATGCCAGTGTCCATCAGATC 57.365 50.000 0.00 0.00 0.00 2.75
1931 2083 2.422519 GGAATGCCAGTGTCCATCAGAT 60.423 50.000 0.00 0.00 0.00 2.90
1932 2084 1.065199 GGAATGCCAGTGTCCATCAGA 60.065 52.381 0.00 0.00 0.00 3.27
1933 2085 1.340308 TGGAATGCCAGTGTCCATCAG 60.340 52.381 0.00 0.00 39.92 2.90
1934 2086 0.697658 TGGAATGCCAGTGTCCATCA 59.302 50.000 0.00 0.00 39.92 3.07
1935 2087 1.838112 TTGGAATGCCAGTGTCCATC 58.162 50.000 0.00 0.00 46.91 3.51
1936 2088 2.307496 TTTGGAATGCCAGTGTCCAT 57.693 45.000 0.00 0.00 46.91 3.41
1937 2089 2.079170 TTTTGGAATGCCAGTGTCCA 57.921 45.000 0.00 0.00 46.91 4.02
1954 2106 6.888105 ACATTGGTCTCTGGTTTCAATTTTT 58.112 32.000 0.00 0.00 0.00 1.94
1955 2107 6.484364 ACATTGGTCTCTGGTTTCAATTTT 57.516 33.333 0.00 0.00 0.00 1.82
1956 2108 6.324770 AGAACATTGGTCTCTGGTTTCAATTT 59.675 34.615 0.00 0.00 0.00 1.82
1957 2109 5.835280 AGAACATTGGTCTCTGGTTTCAATT 59.165 36.000 0.00 0.00 0.00 2.32
1958 2110 5.242393 CAGAACATTGGTCTCTGGTTTCAAT 59.758 40.000 0.00 0.00 32.90 2.57
1959 2111 4.580167 CAGAACATTGGTCTCTGGTTTCAA 59.420 41.667 0.00 0.00 32.90 2.69
1960 2112 4.136796 CAGAACATTGGTCTCTGGTTTCA 58.863 43.478 0.00 0.00 32.90 2.69
1961 2113 3.503748 CCAGAACATTGGTCTCTGGTTTC 59.496 47.826 17.32 0.00 41.86 2.78
1962 2114 3.490348 CCAGAACATTGGTCTCTGGTTT 58.510 45.455 17.32 0.00 41.86 3.27
1963 2115 2.815589 GCCAGAACATTGGTCTCTGGTT 60.816 50.000 22.47 0.00 44.87 3.67
1964 2116 1.271597 GCCAGAACATTGGTCTCTGGT 60.272 52.381 22.47 0.00 44.87 4.00
1965 2117 1.457346 GCCAGAACATTGGTCTCTGG 58.543 55.000 19.66 19.66 45.31 3.86
1966 2118 1.271543 TGGCCAGAACATTGGTCTCTG 60.272 52.381 0.00 3.76 43.37 3.35
1967 2119 1.004044 CTGGCCAGAACATTGGTCTCT 59.996 52.381 29.88 0.00 43.37 3.10
1968 2120 1.457346 CTGGCCAGAACATTGGTCTC 58.543 55.000 29.88 0.00 43.37 3.36
1969 2121 0.038744 CCTGGCCAGAACATTGGTCT 59.961 55.000 34.91 0.00 43.37 3.85
1970 2122 0.038166 TCCTGGCCAGAACATTGGTC 59.962 55.000 34.91 0.00 43.27 4.02
1971 2123 0.251341 GTCCTGGCCAGAACATTGGT 60.251 55.000 34.91 0.00 40.49 3.67
1972 2124 0.967380 GGTCCTGGCCAGAACATTGG 60.967 60.000 34.91 16.71 41.35 3.16
1973 2125 0.251297 TGGTCCTGGCCAGAACATTG 60.251 55.000 34.91 16.15 33.97 2.82
1974 2126 0.482446 TTGGTCCTGGCCAGAACATT 59.518 50.000 34.91 0.00 40.01 2.71
1975 2127 0.482446 TTTGGTCCTGGCCAGAACAT 59.518 50.000 34.91 0.00 40.01 2.71
1976 2128 0.260230 TTTTGGTCCTGGCCAGAACA 59.740 50.000 34.91 24.29 40.01 3.18
1977 2129 1.408969 TTTTTGGTCCTGGCCAGAAC 58.591 50.000 34.91 25.66 40.01 3.01
1978 2130 2.397044 ATTTTTGGTCCTGGCCAGAA 57.603 45.000 34.91 12.50 40.01 3.02
1979 2131 2.368221 CAAATTTTTGGTCCTGGCCAGA 59.632 45.455 34.91 17.23 40.01 3.86
1980 2132 2.769893 CAAATTTTTGGTCCTGGCCAG 58.230 47.619 26.87 26.87 40.01 4.85
1981 2133 2.926778 CAAATTTTTGGTCCTGGCCA 57.073 45.000 4.71 4.71 36.62 5.36
1991 2143 4.599047 TGTCTACCCTGCCAAATTTTTG 57.401 40.909 0.00 0.00 37.90 2.44
1992 2144 5.512921 CCAATGTCTACCCTGCCAAATTTTT 60.513 40.000 0.00 0.00 0.00 1.94
1993 2145 4.020307 CCAATGTCTACCCTGCCAAATTTT 60.020 41.667 0.00 0.00 0.00 1.82
1994 2146 3.515104 CCAATGTCTACCCTGCCAAATTT 59.485 43.478 0.00 0.00 0.00 1.82
1995 2147 3.099141 CCAATGTCTACCCTGCCAAATT 58.901 45.455 0.00 0.00 0.00 1.82
1996 2148 2.042979 ACCAATGTCTACCCTGCCAAAT 59.957 45.455 0.00 0.00 0.00 2.32
1997 2149 1.427368 ACCAATGTCTACCCTGCCAAA 59.573 47.619 0.00 0.00 0.00 3.28
1998 2150 1.072266 ACCAATGTCTACCCTGCCAA 58.928 50.000 0.00 0.00 0.00 4.52
1999 2151 0.327924 CACCAATGTCTACCCTGCCA 59.672 55.000 0.00 0.00 0.00 4.92
2000 2152 0.394352 CCACCAATGTCTACCCTGCC 60.394 60.000 0.00 0.00 0.00 4.85
2001 2153 1.032114 GCCACCAATGTCTACCCTGC 61.032 60.000 0.00 0.00 0.00 4.85
2002 2154 0.327924 TGCCACCAATGTCTACCCTG 59.672 55.000 0.00 0.00 0.00 4.45
2003 2155 1.072266 TTGCCACCAATGTCTACCCT 58.928 50.000 0.00 0.00 0.00 4.34
2004 2156 2.024414 GATTGCCACCAATGTCTACCC 58.976 52.381 0.00 0.00 41.60 3.69
2005 2157 2.024414 GGATTGCCACCAATGTCTACC 58.976 52.381 0.00 0.00 41.60 3.18
2006 2158 2.024414 GGGATTGCCACCAATGTCTAC 58.976 52.381 0.00 0.00 41.60 2.59
2007 2159 1.638070 TGGGATTGCCACCAATGTCTA 59.362 47.619 0.00 0.00 41.60 2.59
2008 2160 0.409092 TGGGATTGCCACCAATGTCT 59.591 50.000 0.00 0.00 41.60 3.41
2009 2161 1.265236 TTGGGATTGCCACCAATGTC 58.735 50.000 0.00 0.00 41.60 3.06
2010 2162 1.347378 GTTTGGGATTGCCACCAATGT 59.653 47.619 0.00 0.00 45.43 2.71
2011 2163 1.347050 TGTTTGGGATTGCCACCAATG 59.653 47.619 0.00 0.00 45.43 2.82
2012 2164 1.347378 GTGTTTGGGATTGCCACCAAT 59.653 47.619 0.00 0.00 45.43 3.16
2013 2165 0.755686 GTGTTTGGGATTGCCACCAA 59.244 50.000 0.00 0.00 44.53 3.67
2014 2166 0.397675 TGTGTTTGGGATTGCCACCA 60.398 50.000 0.00 0.00 35.15 4.17
2015 2167 0.755686 TTGTGTTTGGGATTGCCACC 59.244 50.000 0.00 0.00 35.15 4.61
2016 2168 1.540146 GGTTGTGTTTGGGATTGCCAC 60.540 52.381 0.00 0.00 35.15 5.01
2017 2169 0.755686 GGTTGTGTTTGGGATTGCCA 59.244 50.000 0.00 0.00 35.15 4.92
2018 2170 0.755686 TGGTTGTGTTTGGGATTGCC 59.244 50.000 0.00 0.00 0.00 4.52
2019 2171 2.611225 TTGGTTGTGTTTGGGATTGC 57.389 45.000 0.00 0.00 0.00 3.56
2020 2172 4.450053 ACATTTGGTTGTGTTTGGGATTG 58.550 39.130 0.00 0.00 0.00 2.67
2021 2173 4.444164 GGACATTTGGTTGTGTTTGGGATT 60.444 41.667 0.00 0.00 0.00 3.01
2022 2174 3.070878 GGACATTTGGTTGTGTTTGGGAT 59.929 43.478 0.00 0.00 0.00 3.85
2023 2175 2.432510 GGACATTTGGTTGTGTTTGGGA 59.567 45.455 0.00 0.00 0.00 4.37
2024 2176 2.801342 CGGACATTTGGTTGTGTTTGGG 60.801 50.000 0.00 0.00 0.00 4.12
2025 2177 2.099921 TCGGACATTTGGTTGTGTTTGG 59.900 45.455 0.00 0.00 0.00 3.28
2026 2178 3.428746 TCGGACATTTGGTTGTGTTTG 57.571 42.857 0.00 0.00 0.00 2.93
2027 2179 4.664150 ATTCGGACATTTGGTTGTGTTT 57.336 36.364 0.00 0.00 0.00 2.83
2028 2180 5.067273 TCTATTCGGACATTTGGTTGTGTT 58.933 37.500 0.00 0.00 0.00 3.32
2029 2181 4.647611 TCTATTCGGACATTTGGTTGTGT 58.352 39.130 0.00 0.00 0.00 3.72
2030 2182 5.818136 ATCTATTCGGACATTTGGTTGTG 57.182 39.130 0.00 0.00 0.00 3.33
2031 2183 6.834168 AAATCTATTCGGACATTTGGTTGT 57.166 33.333 0.00 0.00 0.00 3.32
2032 2184 9.801873 ATAAAAATCTATTCGGACATTTGGTTG 57.198 29.630 0.00 0.00 0.00 3.77
2049 2201 9.920946 TCTACCCTGCTGAAATAATAAAAATCT 57.079 29.630 0.00 0.00 0.00 2.40
2050 2202 9.952188 GTCTACCCTGCTGAAATAATAAAAATC 57.048 33.333 0.00 0.00 0.00 2.17
2051 2203 9.474313 TGTCTACCCTGCTGAAATAATAAAAAT 57.526 29.630 0.00 0.00 0.00 1.82
2052 2204 8.871629 TGTCTACCCTGCTGAAATAATAAAAA 57.128 30.769 0.00 0.00 0.00 1.94
2053 2205 9.474313 AATGTCTACCCTGCTGAAATAATAAAA 57.526 29.630 0.00 0.00 0.00 1.52
2054 2206 8.902806 CAATGTCTACCCTGCTGAAATAATAAA 58.097 33.333 0.00 0.00 0.00 1.40
2055 2207 7.502226 CCAATGTCTACCCTGCTGAAATAATAA 59.498 37.037 0.00 0.00 0.00 1.40
2056 2208 6.998074 CCAATGTCTACCCTGCTGAAATAATA 59.002 38.462 0.00 0.00 0.00 0.98
2057 2209 5.829924 CCAATGTCTACCCTGCTGAAATAAT 59.170 40.000 0.00 0.00 0.00 1.28
2058 2210 5.192927 CCAATGTCTACCCTGCTGAAATAA 58.807 41.667 0.00 0.00 0.00 1.40
2059 2211 4.227300 ACCAATGTCTACCCTGCTGAAATA 59.773 41.667 0.00 0.00 0.00 1.40
2060 2212 3.010584 ACCAATGTCTACCCTGCTGAAAT 59.989 43.478 0.00 0.00 0.00 2.17
2061 2213 2.375174 ACCAATGTCTACCCTGCTGAAA 59.625 45.455 0.00 0.00 0.00 2.69
2062 2214 1.985159 ACCAATGTCTACCCTGCTGAA 59.015 47.619 0.00 0.00 0.00 3.02
2063 2215 1.278985 CACCAATGTCTACCCTGCTGA 59.721 52.381 0.00 0.00 0.00 4.26
2064 2216 1.679944 CCACCAATGTCTACCCTGCTG 60.680 57.143 0.00 0.00 0.00 4.41
2065 2217 0.620556 CCACCAATGTCTACCCTGCT 59.379 55.000 0.00 0.00 0.00 4.24
2066 2218 1.032114 GCCACCAATGTCTACCCTGC 61.032 60.000 0.00 0.00 0.00 4.85
2067 2219 0.327924 TGCCACCAATGTCTACCCTG 59.672 55.000 0.00 0.00 0.00 4.45
2068 2220 1.072266 TTGCCACCAATGTCTACCCT 58.928 50.000 0.00 0.00 0.00 4.34
2069 2221 2.024414 GATTGCCACCAATGTCTACCC 58.976 52.381 0.00 0.00 41.60 3.69
2070 2222 2.024414 GGATTGCCACCAATGTCTACC 58.976 52.381 0.00 0.00 41.60 3.18
2071 2223 2.024414 GGGATTGCCACCAATGTCTAC 58.976 52.381 0.00 0.00 41.60 2.59
2072 2224 1.638070 TGGGATTGCCACCAATGTCTA 59.362 47.619 0.00 0.00 41.60 2.59
2073 2225 0.409092 TGGGATTGCCACCAATGTCT 59.591 50.000 0.00 0.00 41.60 3.41
2074 2226 1.265236 TTGGGATTGCCACCAATGTC 58.735 50.000 0.00 0.00 41.60 3.06
2075 2227 1.347378 GTTTGGGATTGCCACCAATGT 59.653 47.619 0.00 0.00 45.43 2.71
2076 2228 1.347050 TGTTTGGGATTGCCACCAATG 59.653 47.619 0.00 0.00 45.43 2.82
2077 2229 1.347378 GTGTTTGGGATTGCCACCAAT 59.653 47.619 0.00 0.00 45.43 3.16
2078 2230 0.755686 GTGTTTGGGATTGCCACCAA 59.244 50.000 0.00 0.00 44.53 3.67
2079 2231 0.397675 TGTGTTTGGGATTGCCACCA 60.398 50.000 0.00 0.00 35.15 4.17
2080 2232 0.755686 TTGTGTTTGGGATTGCCACC 59.244 50.000 0.00 0.00 35.15 4.61
2081 2233 1.540146 GGTTGTGTTTGGGATTGCCAC 60.540 52.381 0.00 0.00 35.15 5.01
2082 2234 0.755686 GGTTGTGTTTGGGATTGCCA 59.244 50.000 0.00 0.00 35.15 4.92
2083 2235 0.755686 TGGTTGTGTTTGGGATTGCC 59.244 50.000 0.00 0.00 0.00 4.52
2084 2236 2.611225 TTGGTTGTGTTTGGGATTGC 57.389 45.000 0.00 0.00 0.00 3.56
2085 2237 4.450053 ACATTTGGTTGTGTTTGGGATTG 58.550 39.130 0.00 0.00 0.00 2.67
2086 2238 4.444164 GGACATTTGGTTGTGTTTGGGATT 60.444 41.667 0.00 0.00 0.00 3.01
2087 2239 3.070878 GGACATTTGGTTGTGTTTGGGAT 59.929 43.478 0.00 0.00 0.00 3.85
2088 2240 2.432510 GGACATTTGGTTGTGTTTGGGA 59.567 45.455 0.00 0.00 0.00 4.37
2089 2241 2.801342 CGGACATTTGGTTGTGTTTGGG 60.801 50.000 0.00 0.00 0.00 4.12
2090 2242 2.099921 TCGGACATTTGGTTGTGTTTGG 59.900 45.455 0.00 0.00 0.00 3.28
2091 2243 3.428746 TCGGACATTTGGTTGTGTTTG 57.571 42.857 0.00 0.00 0.00 2.93
2092 2244 4.664150 ATTCGGACATTTGGTTGTGTTT 57.336 36.364 0.00 0.00 0.00 2.83
2093 2245 5.067273 TCTATTCGGACATTTGGTTGTGTT 58.933 37.500 0.00 0.00 0.00 3.32
2094 2246 4.647611 TCTATTCGGACATTTGGTTGTGT 58.352 39.130 0.00 0.00 0.00 3.72
2095 2247 5.818136 ATCTATTCGGACATTTGGTTGTG 57.182 39.130 0.00 0.00 0.00 3.33
2096 2248 6.834168 AAATCTATTCGGACATTTGGTTGT 57.166 33.333 0.00 0.00 0.00 3.32
2097 2249 9.801873 ATAAAAATCTATTCGGACATTTGGTTG 57.198 29.630 0.00 0.00 0.00 3.77
2122 2274 8.893727 GGCAGTACAACTAACATCAGAAATAAT 58.106 33.333 0.00 0.00 0.00 1.28
2123 2275 7.880713 TGGCAGTACAACTAACATCAGAAATAA 59.119 33.333 0.00 0.00 0.00 1.40
2124 2276 7.390823 TGGCAGTACAACTAACATCAGAAATA 58.609 34.615 0.00 0.00 0.00 1.40
2125 2277 6.237901 TGGCAGTACAACTAACATCAGAAAT 58.762 36.000 0.00 0.00 0.00 2.17
2126 2278 5.616270 TGGCAGTACAACTAACATCAGAAA 58.384 37.500 0.00 0.00 0.00 2.52
2127 2279 5.222079 TGGCAGTACAACTAACATCAGAA 57.778 39.130 0.00 0.00 0.00 3.02
2128 2280 4.882842 TGGCAGTACAACTAACATCAGA 57.117 40.909 0.00 0.00 0.00 3.27
2129 2281 4.268644 CGATGGCAGTACAACTAACATCAG 59.731 45.833 16.62 9.79 38.95 2.90
2130 2282 4.180817 CGATGGCAGTACAACTAACATCA 58.819 43.478 16.62 0.00 38.95 3.07
2131 2283 4.181578 ACGATGGCAGTACAACTAACATC 58.818 43.478 0.00 10.67 37.27 3.06
2132 2284 4.202245 ACGATGGCAGTACAACTAACAT 57.798 40.909 0.00 0.00 0.00 2.71
2133 2285 3.671008 ACGATGGCAGTACAACTAACA 57.329 42.857 0.00 0.00 0.00 2.41
2134 2286 6.470557 TTTAACGATGGCAGTACAACTAAC 57.529 37.500 0.00 0.00 0.00 2.34
2135 2287 6.092944 CCATTTAACGATGGCAGTACAACTAA 59.907 38.462 0.00 0.00 40.11 2.24
2136 2288 5.583061 CCATTTAACGATGGCAGTACAACTA 59.417 40.000 0.00 0.00 40.11 2.24
2137 2289 4.394920 CCATTTAACGATGGCAGTACAACT 59.605 41.667 0.00 0.00 40.11 3.16
2138 2290 4.393680 TCCATTTAACGATGGCAGTACAAC 59.606 41.667 1.77 0.00 45.07 3.32
2139 2291 4.580868 TCCATTTAACGATGGCAGTACAA 58.419 39.130 1.77 0.00 45.07 2.41
2140 2292 4.209307 TCCATTTAACGATGGCAGTACA 57.791 40.909 1.77 0.00 45.07 2.90
2141 2293 6.220930 TCTATCCATTTAACGATGGCAGTAC 58.779 40.000 1.77 0.00 45.07 2.73
2142 2294 6.413783 TCTATCCATTTAACGATGGCAGTA 57.586 37.500 1.77 0.00 45.07 2.74
2143 2295 5.290493 TCTATCCATTTAACGATGGCAGT 57.710 39.130 1.77 0.00 45.07 4.40
2144 2296 5.934043 TGATCTATCCATTTAACGATGGCAG 59.066 40.000 1.77 2.55 45.07 4.85
2145 2297 5.863965 TGATCTATCCATTTAACGATGGCA 58.136 37.500 1.77 0.00 45.07 4.92
2146 2298 6.801539 TTGATCTATCCATTTAACGATGGC 57.198 37.500 1.77 0.00 45.07 4.40
2164 2316 6.538189 TTTTTCCCGAGCAAATTTTTGATC 57.462 33.333 10.46 10.46 46.81 2.92
2184 2336 9.737844 ATTTAGGTTGTGATTGGCATTATTTTT 57.262 25.926 0.00 0.00 0.00 1.94
2185 2337 9.165035 CATTTAGGTTGTGATTGGCATTATTTT 57.835 29.630 0.00 0.00 0.00 1.82
2186 2338 8.320617 ACATTTAGGTTGTGATTGGCATTATTT 58.679 29.630 0.00 0.00 0.00 1.40
2187 2339 7.850193 ACATTTAGGTTGTGATTGGCATTATT 58.150 30.769 0.00 0.00 0.00 1.40
2188 2340 7.417797 GGACATTTAGGTTGTGATTGGCATTAT 60.418 37.037 0.00 0.00 0.00 1.28
2189 2341 6.127479 GGACATTTAGGTTGTGATTGGCATTA 60.127 38.462 0.00 0.00 0.00 1.90
2190 2342 5.337491 GGACATTTAGGTTGTGATTGGCATT 60.337 40.000 0.00 0.00 0.00 3.56
2191 2343 4.160252 GGACATTTAGGTTGTGATTGGCAT 59.840 41.667 0.00 0.00 0.00 4.40
2192 2344 3.509575 GGACATTTAGGTTGTGATTGGCA 59.490 43.478 0.00 0.00 0.00 4.92
2193 2345 3.427503 CGGACATTTAGGTTGTGATTGGC 60.428 47.826 0.00 0.00 0.00 4.52
2194 2346 4.006989 TCGGACATTTAGGTTGTGATTGG 58.993 43.478 0.00 0.00 0.00 3.16
2195 2347 5.621197 TTCGGACATTTAGGTTGTGATTG 57.379 39.130 0.00 0.00 0.00 2.67
2196 2348 5.048294 GGTTTCGGACATTTAGGTTGTGATT 60.048 40.000 0.00 0.00 0.00 2.57
2197 2349 4.457949 GGTTTCGGACATTTAGGTTGTGAT 59.542 41.667 0.00 0.00 0.00 3.06
2198 2350 3.816523 GGTTTCGGACATTTAGGTTGTGA 59.183 43.478 0.00 0.00 0.00 3.58
2199 2351 3.566322 TGGTTTCGGACATTTAGGTTGTG 59.434 43.478 0.00 0.00 0.00 3.33
2200 2352 3.822940 TGGTTTCGGACATTTAGGTTGT 58.177 40.909 0.00 0.00 0.00 3.32
2201 2353 4.839668 TTGGTTTCGGACATTTAGGTTG 57.160 40.909 0.00 0.00 0.00 3.77
2202 2354 4.038282 GGTTTGGTTTCGGACATTTAGGTT 59.962 41.667 0.00 0.00 0.00 3.50
2203 2355 3.570975 GGTTTGGTTTCGGACATTTAGGT 59.429 43.478 0.00 0.00 0.00 3.08
2204 2356 3.570550 TGGTTTGGTTTCGGACATTTAGG 59.429 43.478 0.00 0.00 0.00 2.69
2205 2357 4.839668 TGGTTTGGTTTCGGACATTTAG 57.160 40.909 0.00 0.00 0.00 1.85
2206 2358 5.349809 GTTTGGTTTGGTTTCGGACATTTA 58.650 37.500 0.00 0.00 0.00 1.40
2207 2359 4.185394 GTTTGGTTTGGTTTCGGACATTT 58.815 39.130 0.00 0.00 0.00 2.32
2208 2360 3.735514 CGTTTGGTTTGGTTTCGGACATT 60.736 43.478 0.00 0.00 0.00 2.71
2209 2361 2.223618 CGTTTGGTTTGGTTTCGGACAT 60.224 45.455 0.00 0.00 0.00 3.06
2210 2362 1.132643 CGTTTGGTTTGGTTTCGGACA 59.867 47.619 0.00 0.00 0.00 4.02
2211 2363 1.534385 CCGTTTGGTTTGGTTTCGGAC 60.534 52.381 0.00 0.00 38.96 4.79
2212 2364 0.739561 CCGTTTGGTTTGGTTTCGGA 59.260 50.000 0.00 0.00 38.96 4.55
2213 2365 3.259832 CCGTTTGGTTTGGTTTCGG 57.740 52.632 0.00 0.00 0.00 4.30
2224 2376 4.760204 AGAAGACAGGAATAAACCGTTTGG 59.240 41.667 6.77 0.00 42.84 3.28
2225 2377 5.941948 AGAAGACAGGAATAAACCGTTTG 57.058 39.130 6.77 0.00 34.73 2.93
2226 2378 8.631480 AATTAGAAGACAGGAATAAACCGTTT 57.369 30.769 1.40 1.40 34.73 3.60
2227 2379 8.631480 AAATTAGAAGACAGGAATAAACCGTT 57.369 30.769 0.00 0.00 34.73 4.44
2228 2380 8.631480 AAAATTAGAAGACAGGAATAAACCGT 57.369 30.769 0.00 0.00 34.73 4.83
2229 2381 9.556030 GAAAAATTAGAAGACAGGAATAAACCG 57.444 33.333 0.00 0.00 34.73 4.44
2233 2385 9.938280 TCGAGAAAAATTAGAAGACAGGAATAA 57.062 29.630 0.00 0.00 0.00 1.40
2234 2386 9.587772 CTCGAGAAAAATTAGAAGACAGGAATA 57.412 33.333 6.58 0.00 0.00 1.75
2235 2387 7.550906 CCTCGAGAAAAATTAGAAGACAGGAAT 59.449 37.037 15.71 0.00 0.00 3.01
2236 2388 6.874134 CCTCGAGAAAAATTAGAAGACAGGAA 59.126 38.462 15.71 0.00 0.00 3.36
2237 2389 6.398918 CCTCGAGAAAAATTAGAAGACAGGA 58.601 40.000 15.71 0.00 0.00 3.86
2238 2390 5.064071 GCCTCGAGAAAAATTAGAAGACAGG 59.936 44.000 15.71 0.00 0.00 4.00
2239 2391 5.639506 TGCCTCGAGAAAAATTAGAAGACAG 59.360 40.000 15.71 0.00 0.00 3.51
2240 2392 5.547465 TGCCTCGAGAAAAATTAGAAGACA 58.453 37.500 15.71 0.00 0.00 3.41
2241 2393 6.670077 ATGCCTCGAGAAAAATTAGAAGAC 57.330 37.500 15.71 0.00 0.00 3.01
2242 2394 8.964476 AATATGCCTCGAGAAAAATTAGAAGA 57.036 30.769 15.71 0.00 0.00 2.87
2243 2395 9.050601 AGAATATGCCTCGAGAAAAATTAGAAG 57.949 33.333 15.71 0.00 0.00 2.85
2244 2396 8.964476 AGAATATGCCTCGAGAAAAATTAGAA 57.036 30.769 15.71 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.