Multiple sequence alignment - TraesCS5D01G494800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G494800 chr5D 100.000 4402 0 0 1 4402 526573362 526568961 0.000000e+00 8130.0
1 TraesCS5D01G494800 chr5D 76.179 424 60 30 1117 1523 499246713 499246314 7.520000e-43 185.0
2 TraesCS5D01G494800 chr5D 87.413 143 10 2 3465 3599 309717724 309717866 1.640000e-34 158.0
3 TraesCS5D01G494800 chr5B 87.182 2512 129 64 154 2546 662038044 662035607 0.000000e+00 2676.0
4 TraesCS5D01G494800 chr5B 82.883 1443 101 80 3030 4382 662035465 662034079 0.000000e+00 1162.0
5 TraesCS5D01G494800 chr5B 87.296 551 35 9 2160 2700 668593921 668594446 8.150000e-167 597.0
6 TraesCS5D01G494800 chr5B 86.164 477 36 9 2358 2822 668584719 668585177 5.120000e-134 488.0
7 TraesCS5D01G494800 chr5B 84.696 477 38 14 1836 2303 668584060 668584510 1.120000e-120 444.0
8 TraesCS5D01G494800 chr5B 94.375 160 9 0 1407 1566 668593101 668593260 3.400000e-61 246.0
9 TraesCS5D01G494800 chr5B 82.258 310 29 8 1758 2067 668593277 668593560 1.220000e-60 244.0
10 TraesCS5D01G494800 chr5B 94.872 156 6 2 1253 1406 668587278 668587433 4.400000e-60 243.0
11 TraesCS5D01G494800 chr5B 92.258 155 5 4 6 157 662039998 662039848 3.450000e-51 213.0
12 TraesCS5D01G494800 chr5B 91.270 126 9 1 2697 2822 668594528 668594651 2.110000e-38 171.0
13 TraesCS5D01G494800 chr5B 78.369 282 40 17 1251 1523 619927206 619926937 3.520000e-36 163.0
14 TraesCS5D01G494800 chr5B 97.183 71 2 0 3218 3288 668606596 668606666 2.150000e-23 121.0
15 TraesCS5D01G494800 chr5B 85.714 70 1 2 2880 2940 662035606 662035537 1.020000e-06 65.8
16 TraesCS5D01G494800 chr5A 85.260 1133 63 56 574 1634 653717842 653716742 0.000000e+00 1072.0
17 TraesCS5D01G494800 chr5A 86.182 825 61 30 3029 3829 653715539 653714744 0.000000e+00 843.0
18 TraesCS5D01G494800 chr5A 74.702 419 70 30 1117 1523 623504422 623504028 2.120000e-33 154.0
19 TraesCS5D01G494800 chr5A 79.216 255 19 14 2675 2905 653715923 653715679 3.550000e-31 147.0
20 TraesCS5D01G494800 chr5A 85.315 143 13 2 3465 3599 104950676 104950818 1.650000e-29 141.0
21 TraesCS5D01G494800 chr5A 80.838 167 14 12 2278 2438 653716214 653716060 1.000000e-21 115.0
22 TraesCS5D01G494800 chr5A 86.420 81 8 2 2908 2985 653715634 653715554 7.840000e-13 86.1
23 TraesCS5D01G494800 chr1A 78.351 485 73 25 1105 1574 495193088 495192621 7.210000e-73 285.0
24 TraesCS5D01G494800 chr1A 86.620 142 11 2 3465 3598 86564284 86564425 2.740000e-32 150.0
25 TraesCS5D01G494800 chr1D 82.154 325 44 8 1251 1574 397973931 397973620 2.610000e-67 267.0
26 TraesCS5D01G494800 chr1B 81.231 325 47 9 1251 1574 533324651 533324340 2.630000e-62 250.0
27 TraesCS5D01G494800 chr3A 80.488 328 48 12 1251 1576 594492470 594492783 2.050000e-58 237.0
28 TraesCS5D01G494800 chr3A 92.593 108 8 0 3491 3598 539299049 539298942 5.890000e-34 156.0
29 TraesCS5D01G494800 chr3A 77.985 268 40 16 1252 1511 170811690 170811946 2.740000e-32 150.0
30 TraesCS5D01G494800 chr3A 86.301 146 6 6 3465 3599 620783719 620783861 3.550000e-31 147.0
31 TraesCS5D01G494800 chr3D 80.428 327 48 12 1252 1576 451885579 451885891 7.360000e-58 235.0
32 TraesCS5D01G494800 chr3D 80.183 328 49 12 1251 1576 451710101 451710414 9.520000e-57 231.0
33 TraesCS5D01G494800 chr3D 74.048 289 69 6 3091 3376 179949245 179949530 3.600000e-21 113.0
34 TraesCS5D01G494800 chr3B 79.141 326 52 13 1251 1574 593163820 593164131 1.240000e-50 211.0
35 TraesCS5D01G494800 chr3B 79.141 326 52 12 1251 1574 593541304 593541615 1.240000e-50 211.0
36 TraesCS5D01G494800 chr6D 77.647 340 64 8 1251 1581 396011208 396010872 3.470000e-46 196.0
37 TraesCS5D01G494800 chr6A 77.286 339 67 7 1251 1581 542430786 542430450 1.620000e-44 191.0
38 TraesCS5D01G494800 chr2A 77.151 337 59 15 1246 1575 29989770 29990095 3.500000e-41 180.0
39 TraesCS5D01G494800 chr2D 87.413 143 10 2 3465 3599 648400270 648400412 1.640000e-34 158.0
40 TraesCS5D01G494800 chr2D 95.455 44 2 0 1126 1169 27836935 27836978 2.200000e-08 71.3
41 TraesCS5D01G494800 chr4A 88.889 108 11 1 3491 3598 75131347 75131241 9.930000e-27 132.0
42 TraesCS5D01G494800 chr4D 95.745 47 2 0 1127 1173 441118095 441118141 4.720000e-10 76.8
43 TraesCS5D01G494800 chr4B 95.745 47 2 0 1127 1173 547184605 547184651 4.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G494800 chr5D 526568961 526573362 4401 True 8130.000000 8130 100.000000 1 4402 1 chr5D.!!$R2 4401
1 TraesCS5D01G494800 chr5B 662034079 662039998 5919 True 1029.200000 2676 87.009250 6 4382 4 chr5B.!!$R2 4376
2 TraesCS5D01G494800 chr5B 668584060 668587433 3373 False 391.666667 488 88.577333 1253 2822 3 chr5B.!!$F2 1569
3 TraesCS5D01G494800 chr5B 668593101 668594651 1550 False 314.500000 597 88.799750 1407 2822 4 chr5B.!!$F3 1415
4 TraesCS5D01G494800 chr5A 653714744 653717842 3098 True 452.620000 1072 83.583200 574 3829 5 chr5A.!!$R2 3255

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 2123 0.177141 TACCGCCATCACTTACAGCC 59.823 55.0 0.00 0.0 0.00 4.85 F
300 2126 0.179121 CGCCATCACTTACAGCCGTA 60.179 55.0 0.00 0.0 0.00 4.02 F
563 2396 0.250901 AAACAGTGCCAGGTAGCAGG 60.251 55.0 0.00 0.0 45.14 4.85 F
1811 3815 0.250295 TCTTTTGAGACGGGGTGCTG 60.250 55.0 0.00 0.0 0.00 4.41 F
2122 4168 0.539438 GGCATGGCGATAAATCCCCA 60.539 55.0 2.41 0.0 38.95 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 3549 0.034089 GGGAGATTTGGGTGGGAGTG 60.034 60.0 0.00 0.0 0.00 3.51 R
1630 3589 0.676782 TTTTCTAGGCAAGCGGAGGC 60.677 55.0 0.00 0.0 40.37 4.70 R
2487 5007 0.247736 GAGATCGCCAGACACCAACT 59.752 55.0 0.00 0.0 0.00 3.16 R
2665 5195 0.036294 GCCCTACACAGTGGGTTCTC 60.036 60.0 1.77 0.0 45.06 2.87 R
3646 7170 0.107214 CACCACTCCACACAACCACT 60.107 55.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.700350 AGGGGAGAGGACCAGGGG 61.700 72.222 0.00 0.00 0.00 4.79
22 23 2.454941 GGGAGAGGACCAGGGGAA 59.545 66.667 0.00 0.00 0.00 3.97
27 28 0.252927 AGAGGACCAGGGGAAAGAGG 60.253 60.000 0.00 0.00 0.00 3.69
32 33 1.557371 GACCAGGGGAAAGAGGAGAAG 59.443 57.143 0.00 0.00 0.00 2.85
130 134 3.431725 CCGCGCTTTTGGTCTCCC 61.432 66.667 5.56 0.00 0.00 4.30
131 135 3.431725 CGCGCTTTTGGTCTCCCC 61.432 66.667 5.56 0.00 0.00 4.81
132 136 2.282180 GCGCTTTTGGTCTCCCCA 60.282 61.111 0.00 0.00 43.27 4.96
133 137 2.626780 GCGCTTTTGGTCTCCCCAC 61.627 63.158 0.00 0.00 45.19 4.61
134 138 1.971695 CGCTTTTGGTCTCCCCACC 60.972 63.158 0.00 0.00 45.19 4.61
260 2086 3.321111 AGAATCATGGCTGGCAATCAATC 59.679 43.478 8.35 3.84 0.00 2.67
289 2115 2.088423 TCCAACATTTACCGCCATCAC 58.912 47.619 0.00 0.00 0.00 3.06
297 2123 0.177141 TACCGCCATCACTTACAGCC 59.823 55.000 0.00 0.00 0.00 4.85
300 2126 0.179121 CGCCATCACTTACAGCCGTA 60.179 55.000 0.00 0.00 0.00 4.02
303 2129 2.810650 CCATCACTTACAGCCGTACTC 58.189 52.381 0.00 0.00 0.00 2.59
304 2130 2.451132 CATCACTTACAGCCGTACTCG 58.549 52.381 0.00 0.00 0.00 4.18
305 2131 1.527034 TCACTTACAGCCGTACTCGT 58.473 50.000 0.00 0.00 35.01 4.18
306 2132 1.198408 TCACTTACAGCCGTACTCGTG 59.802 52.381 0.00 0.00 35.01 4.35
307 2133 0.524862 ACTTACAGCCGTACTCGTGG 59.475 55.000 0.00 0.00 35.01 4.94
308 2134 0.524862 CTTACAGCCGTACTCGTGGT 59.475 55.000 0.00 0.00 35.01 4.16
310 2136 1.819928 TACAGCCGTACTCGTGGTTA 58.180 50.000 0.00 0.00 35.01 2.85
311 2137 1.180029 ACAGCCGTACTCGTGGTTAT 58.820 50.000 0.00 0.00 35.01 1.89
314 2140 2.601763 CAGCCGTACTCGTGGTTATTTC 59.398 50.000 0.00 0.00 35.01 2.17
316 2142 2.417787 GCCGTACTCGTGGTTATTTCCT 60.418 50.000 0.00 0.00 35.01 3.36
317 2143 3.184541 CCGTACTCGTGGTTATTTCCTG 58.815 50.000 0.00 0.00 35.01 3.86
318 2144 2.601763 CGTACTCGTGGTTATTTCCTGC 59.398 50.000 0.00 0.00 0.00 4.85
319 2145 3.675228 CGTACTCGTGGTTATTTCCTGCT 60.675 47.826 0.00 0.00 0.00 4.24
320 2146 2.973945 ACTCGTGGTTATTTCCTGCTC 58.026 47.619 0.00 0.00 0.00 4.26
321 2147 2.280628 CTCGTGGTTATTTCCTGCTCC 58.719 52.381 0.00 0.00 0.00 4.70
322 2148 1.906574 TCGTGGTTATTTCCTGCTCCT 59.093 47.619 0.00 0.00 0.00 3.69
323 2149 2.304761 TCGTGGTTATTTCCTGCTCCTT 59.695 45.455 0.00 0.00 0.00 3.36
324 2150 2.678336 CGTGGTTATTTCCTGCTCCTTC 59.322 50.000 0.00 0.00 0.00 3.46
325 2151 3.619979 CGTGGTTATTTCCTGCTCCTTCT 60.620 47.826 0.00 0.00 0.00 2.85
326 2152 4.336280 GTGGTTATTTCCTGCTCCTTCTT 58.664 43.478 0.00 0.00 0.00 2.52
327 2153 4.156739 GTGGTTATTTCCTGCTCCTTCTTG 59.843 45.833 0.00 0.00 0.00 3.02
328 2154 3.129462 GGTTATTTCCTGCTCCTTCTTGC 59.871 47.826 0.00 0.00 0.00 4.01
329 2155 2.592102 ATTTCCTGCTCCTTCTTGCA 57.408 45.000 0.00 0.00 37.63 4.08
330 2156 2.363306 TTTCCTGCTCCTTCTTGCAA 57.637 45.000 0.00 0.00 38.81 4.08
331 2157 2.363306 TTCCTGCTCCTTCTTGCAAA 57.637 45.000 0.00 0.00 38.81 3.68
332 2158 2.363306 TCCTGCTCCTTCTTGCAAAA 57.637 45.000 0.00 0.00 38.81 2.44
346 2172 3.564235 TGCAAAACTGCAAGCAGATAG 57.436 42.857 27.17 13.23 46.30 2.08
354 2180 2.686405 CTGCAAGCAGATAGGCAATTGA 59.314 45.455 16.75 0.00 46.30 2.57
376 2203 4.753516 TCTTTTCTAGATTGGGATCGCA 57.246 40.909 8.63 8.63 37.37 5.10
378 2205 4.405680 TCTTTTCTAGATTGGGATCGCAGA 59.594 41.667 12.66 3.69 45.75 4.26
379 2206 3.735237 TTCTAGATTGGGATCGCAGAC 57.265 47.619 12.66 10.63 42.51 3.51
391 2218 3.589881 GCAGACATCATGCGCCCC 61.590 66.667 4.18 0.00 33.31 5.80
396 2223 1.845809 GACATCATGCGCCCCGATTC 61.846 60.000 4.18 1.81 0.00 2.52
445 2275 5.590259 CGAAATCCCTGACAATTAGGACAAT 59.410 40.000 0.00 0.00 37.52 2.71
455 2285 6.211184 TGACAATTAGGACAATCCAGCAAATT 59.789 34.615 0.00 0.00 39.61 1.82
459 2289 9.037737 CAATTAGGACAATCCAGCAAATTATTG 57.962 33.333 0.00 0.00 39.61 1.90
460 2290 5.603170 AGGACAATCCAGCAAATTATTGG 57.397 39.130 0.00 0.25 39.61 3.16
470 2300 4.503734 CAGCAAATTATTGGGCATTGTACG 59.496 41.667 5.00 0.00 37.02 3.67
483 2316 4.155280 GGCATTGTACGTACTGGTGAAATT 59.845 41.667 25.12 0.00 0.00 1.82
485 2318 5.567534 GCATTGTACGTACTGGTGAAATTTG 59.432 40.000 25.12 8.40 0.00 2.32
559 2392 1.244019 GCCCAAACAGTGCCAGGTAG 61.244 60.000 0.00 0.00 0.00 3.18
560 2393 1.244019 CCCAAACAGTGCCAGGTAGC 61.244 60.000 0.00 0.00 0.00 3.58
561 2394 0.537143 CCAAACAGTGCCAGGTAGCA 60.537 55.000 0.00 0.00 41.46 3.49
562 2395 0.877071 CAAACAGTGCCAGGTAGCAG 59.123 55.000 0.00 0.00 45.14 4.24
563 2396 0.250901 AAACAGTGCCAGGTAGCAGG 60.251 55.000 0.00 0.00 45.14 4.85
564 2397 2.129555 AACAGTGCCAGGTAGCAGGG 62.130 60.000 5.44 1.91 45.14 4.45
618 2451 2.668550 GGTCCCAACTGTCCACGC 60.669 66.667 0.00 0.00 0.00 5.34
635 2468 1.451028 GCCGCTTTCCATCAGAGCT 60.451 57.895 0.00 0.00 34.33 4.09
640 2473 0.813210 CTTTCCATCAGAGCTCGGCC 60.813 60.000 9.22 0.00 0.00 6.13
641 2474 1.552799 TTTCCATCAGAGCTCGGCCA 61.553 55.000 9.22 0.00 0.00 5.36
643 2476 2.584418 CATCAGAGCTCGGCCACG 60.584 66.667 9.22 0.00 42.74 4.94
644 2477 3.842923 ATCAGAGCTCGGCCACGG 61.843 66.667 9.22 0.00 41.39 4.94
757 2625 3.705638 CGCTGGAGTGTGTGCGTG 61.706 66.667 0.00 0.00 42.93 5.34
765 2650 1.207593 GTGTGTGCGTGCATCTTCC 59.792 57.895 0.00 0.00 0.00 3.46
769 2654 1.001378 GTGTGCGTGCATCTTCCTTTT 60.001 47.619 0.00 0.00 0.00 2.27
770 2655 1.266718 TGTGCGTGCATCTTCCTTTTC 59.733 47.619 0.00 0.00 0.00 2.29
772 2657 2.030805 GTGCGTGCATCTTCCTTTTCTT 60.031 45.455 0.00 0.00 0.00 2.52
773 2658 2.622942 TGCGTGCATCTTCCTTTTCTTT 59.377 40.909 0.00 0.00 0.00 2.52
774 2659 3.068024 TGCGTGCATCTTCCTTTTCTTTT 59.932 39.130 0.00 0.00 0.00 2.27
775 2660 3.670523 GCGTGCATCTTCCTTTTCTTTTC 59.329 43.478 0.00 0.00 0.00 2.29
776 2661 4.557496 GCGTGCATCTTCCTTTTCTTTTCT 60.557 41.667 0.00 0.00 0.00 2.52
777 2662 5.149977 CGTGCATCTTCCTTTTCTTTTCTC 58.850 41.667 0.00 0.00 0.00 2.87
778 2663 5.149977 GTGCATCTTCCTTTTCTTTTCTCG 58.850 41.667 0.00 0.00 0.00 4.04
827 2712 1.450360 GATTGGATTAGCCCCTCCCT 58.550 55.000 0.00 0.00 34.97 4.20
829 2714 0.697854 TTGGATTAGCCCCTCCCTCC 60.698 60.000 0.00 0.00 34.97 4.30
830 2715 1.848431 GGATTAGCCCCTCCCTCCC 60.848 68.421 0.00 0.00 0.00 4.30
891 2776 3.200329 ATAAATACCCCGCCCCGCC 62.200 63.158 0.00 0.00 0.00 6.13
1169 3084 2.505982 CTCCGGCACCATGGGTAG 59.494 66.667 18.09 6.72 32.11 3.18
1187 3109 2.034221 GTTTTCCCTCCGCCAGCT 59.966 61.111 0.00 0.00 0.00 4.24
1189 3111 4.722700 TTTCCCTCCGCCAGCTGC 62.723 66.667 8.66 2.87 0.00 5.25
1205 3127 3.188786 GCGCGACTCCACCATGAC 61.189 66.667 12.10 0.00 0.00 3.06
1209 3131 1.514228 CGACTCCACCATGACGTCG 60.514 63.158 11.62 0.00 40.92 5.12
1343 3289 2.281484 TGTTCAACGAGGGGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
1599 3556 4.974438 ACCCCGCCTTCACTCCCA 62.974 66.667 0.00 0.00 0.00 4.37
1630 3589 2.017049 CCGCCAACTTTCCTTCCTATG 58.983 52.381 0.00 0.00 0.00 2.23
1633 3592 2.621668 GCCAACTTTCCTTCCTATGCCT 60.622 50.000 0.00 0.00 0.00 4.75
1634 3593 3.282885 CCAACTTTCCTTCCTATGCCTC 58.717 50.000 0.00 0.00 0.00 4.70
1649 3608 0.676782 GCCTCCGCTTGCCTAGAAAA 60.677 55.000 0.00 0.00 0.00 2.29
1656 3616 3.181490 CCGCTTGCCTAGAAAATTTACCC 60.181 47.826 0.00 0.00 0.00 3.69
1664 3628 6.015772 TGCCTAGAAAATTTACCCAAGTCAAC 60.016 38.462 0.00 0.00 0.00 3.18
1688 3652 4.517285 GGATGCTGTTTCTTGGTCATAGA 58.483 43.478 0.00 0.00 0.00 1.98
1716 3695 3.810310 AAACATTCGCCTTGGTTGAAA 57.190 38.095 1.83 0.00 0.00 2.69
1743 3727 0.829602 TTCTTTTGCGGCCAATGGGA 60.830 50.000 2.24 0.00 35.59 4.37
1809 3813 2.244946 GTCTTTTGAGACGGGGTGC 58.755 57.895 0.00 0.00 0.00 5.01
1810 3814 0.250338 GTCTTTTGAGACGGGGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
1811 3815 0.250295 TCTTTTGAGACGGGGTGCTG 60.250 55.000 0.00 0.00 0.00 4.41
1812 3816 1.856265 CTTTTGAGACGGGGTGCTGC 61.856 60.000 0.00 0.00 0.00 5.25
1813 3817 2.616797 TTTTGAGACGGGGTGCTGCA 62.617 55.000 0.00 0.00 0.00 4.41
1828 3833 4.832608 GCACCGTCCGTCCCCATC 62.833 72.222 0.00 0.00 0.00 3.51
1829 3834 3.387091 CACCGTCCGTCCCCATCA 61.387 66.667 0.00 0.00 0.00 3.07
1830 3835 2.365105 ACCGTCCGTCCCCATCAT 60.365 61.111 0.00 0.00 0.00 2.45
1871 3881 1.212229 GTCTTCCGTCCCGTCAGAC 59.788 63.158 0.00 0.00 30.75 3.51
1927 3949 5.512788 CACAGTAGCATGCGAAAAATAAAGG 59.487 40.000 13.01 0.00 0.00 3.11
2053 4098 8.709386 AAATGAAGATATGATACGGCAGATAC 57.291 34.615 0.00 0.00 0.00 2.24
2055 4100 4.294416 AGATATGATACGGCAGATACGC 57.706 45.455 0.00 0.00 34.00 4.42
2068 4113 3.572337 TACGCGTGGCACGTAGTA 58.428 55.556 36.68 33.34 44.73 1.82
2069 4114 1.425031 TACGCGTGGCACGTAGTAG 59.575 57.895 36.68 24.74 44.73 2.57
2070 4115 1.298157 TACGCGTGGCACGTAGTAGT 61.298 55.000 36.68 28.07 44.73 2.73
2071 4116 1.443194 CGCGTGGCACGTAGTAGTT 60.443 57.895 36.68 0.00 44.73 2.24
2072 4117 1.670971 CGCGTGGCACGTAGTAGTTG 61.671 60.000 36.68 15.30 44.73 3.16
2073 4118 0.665369 GCGTGGCACGTAGTAGTTGT 60.665 55.000 36.68 0.00 44.73 3.32
2086 4131 7.013083 CACGTAGTAGTTGTACCAGGATAGAAT 59.987 40.741 0.00 0.00 41.61 2.40
2092 4137 7.040473 AGTTGTACCAGGATAGAATAGAACG 57.960 40.000 0.00 0.00 0.00 3.95
2097 4142 4.039366 ACCAGGATAGAATAGAACGGAAGC 59.961 45.833 0.00 0.00 0.00 3.86
2122 4168 0.539438 GGCATGGCGATAAATCCCCA 60.539 55.000 2.41 0.00 38.95 4.96
2130 4176 5.009631 TGGCGATAAATCCCCATAAATCTG 58.990 41.667 0.00 0.00 30.16 2.90
2175 4505 8.242053 AGCATTTCTTTTCTGAATCTATGTGTG 58.758 33.333 0.00 0.00 0.00 3.82
2417 4929 3.060473 GTCTCTTTCGTTTCCGTGTCAAG 60.060 47.826 0.00 0.00 35.01 3.02
2419 4931 2.159071 TCTTTCGTTTCCGTGTCAAGGA 60.159 45.455 3.03 3.03 35.69 3.36
2441 4958 1.741732 GCGTCAATGCTGATCAGGAGT 60.742 52.381 23.89 18.15 33.05 3.85
2442 4959 2.481969 GCGTCAATGCTGATCAGGAGTA 60.482 50.000 23.89 8.21 33.05 2.59
2443 4960 3.119291 CGTCAATGCTGATCAGGAGTAC 58.881 50.000 23.89 17.66 33.05 2.73
2446 4963 5.527951 GTCAATGCTGATCAGGAGTACTAG 58.472 45.833 23.89 8.92 33.05 2.57
2459 4976 6.550108 TCAGGAGTACTAGACTGTTTTTGTCT 59.450 38.462 16.66 0.00 45.48 3.41
2487 5007 5.732633 TGGCTTTAATGTTTAGGCGTAGTA 58.267 37.500 0.00 0.00 37.28 1.82
2488 5008 5.813672 TGGCTTTAATGTTTAGGCGTAGTAG 59.186 40.000 0.00 0.00 37.28 2.57
2489 5009 5.814188 GGCTTTAATGTTTAGGCGTAGTAGT 59.186 40.000 0.00 0.00 0.00 2.73
2500 5020 1.992170 CGTAGTAGTTGGTGTCTGGC 58.008 55.000 0.00 0.00 0.00 4.85
2534 5054 3.190849 CTGTCATGTGCTCCGGCG 61.191 66.667 0.00 0.00 42.25 6.46
2553 5073 1.439644 CTCTGGTTAGCGAGGGAGC 59.560 63.158 0.00 0.00 37.41 4.70
2727 5342 1.770294 TTGACCTTTGGTTTTCGCCT 58.230 45.000 0.00 0.00 35.25 5.52
2728 5343 1.770294 TGACCTTTGGTTTTCGCCTT 58.230 45.000 0.00 0.00 35.25 4.35
2729 5344 1.407258 TGACCTTTGGTTTTCGCCTTG 59.593 47.619 0.00 0.00 35.25 3.61
2751 5371 2.603473 TCGTGGTGTGAGGAGGGG 60.603 66.667 0.00 0.00 0.00 4.79
2752 5372 3.706373 CGTGGTGTGAGGAGGGGG 61.706 72.222 0.00 0.00 0.00 5.40
2753 5373 4.035102 GTGGTGTGAGGAGGGGGC 62.035 72.222 0.00 0.00 0.00 5.80
2812 5445 2.819595 CTGACATGGAACGCCCCG 60.820 66.667 0.00 0.00 0.00 5.73
2832 5535 2.738521 CCGTGCTTGGACTGACCG 60.739 66.667 0.00 0.00 42.61 4.79
2871 5574 2.543067 ATCTCGTCCTTTGGCCCTGC 62.543 60.000 0.00 0.00 0.00 4.85
2975 5751 2.792947 CCATCCTACCCCCACGACG 61.793 68.421 0.00 0.00 0.00 5.12
2976 5752 3.152400 ATCCTACCCCCACGACGC 61.152 66.667 0.00 0.00 0.00 5.19
2986 5765 0.179145 CCCACGACGCGATTAACTCT 60.179 55.000 15.93 0.00 0.00 3.24
2988 5767 1.202154 CCACGACGCGATTAACTCTCT 60.202 52.381 15.93 0.00 0.00 3.10
2992 5771 2.531206 GACGCGATTAACTCTCTGCTT 58.469 47.619 15.93 0.00 0.00 3.91
2996 5775 4.045104 CGCGATTAACTCTCTGCTTATGT 58.955 43.478 0.00 0.00 0.00 2.29
3003 5782 5.368256 AACTCTCTGCTTATGTTTTGCTG 57.632 39.130 0.00 0.00 0.00 4.41
3006 5785 4.388485 TCTCTGCTTATGTTTTGCTGACA 58.612 39.130 0.00 0.00 32.72 3.58
3008 5787 6.172630 TCTCTGCTTATGTTTTGCTGACATA 58.827 36.000 4.12 4.12 38.58 2.29
3009 5788 6.825213 TCTCTGCTTATGTTTTGCTGACATAT 59.175 34.615 7.77 0.00 39.12 1.78
3010 5789 7.986889 TCTCTGCTTATGTTTTGCTGACATATA 59.013 33.333 7.77 0.00 39.12 0.86
3011 5790 7.919690 TCTGCTTATGTTTTGCTGACATATAC 58.080 34.615 7.77 5.17 39.12 1.47
3012 5791 7.012327 TCTGCTTATGTTTTGCTGACATATACC 59.988 37.037 7.77 2.75 39.12 2.73
3013 5792 6.601217 TGCTTATGTTTTGCTGACATATACCA 59.399 34.615 7.77 4.52 39.12 3.25
3014 5793 6.912591 GCTTATGTTTTGCTGACATATACCAC 59.087 38.462 7.77 0.00 39.12 4.16
3015 5794 7.201732 GCTTATGTTTTGCTGACATATACCACT 60.202 37.037 7.77 0.00 39.12 4.00
3016 5795 9.325198 CTTATGTTTTGCTGACATATACCACTA 57.675 33.333 7.77 0.00 39.12 2.74
3017 5796 7.792374 ATGTTTTGCTGACATATACCACTAG 57.208 36.000 0.00 0.00 36.04 2.57
3018 5797 6.707290 TGTTTTGCTGACATATACCACTAGT 58.293 36.000 0.00 0.00 0.00 2.57
3019 5798 6.593770 TGTTTTGCTGACATATACCACTAGTG 59.406 38.462 16.34 16.34 0.00 2.74
3020 5799 5.932619 TTGCTGACATATACCACTAGTGT 57.067 39.130 21.18 11.81 0.00 3.55
3022 5801 6.294361 TGCTGACATATACCACTAGTGTTT 57.706 37.500 21.18 10.41 0.00 2.83
3024 5803 7.165485 TGCTGACATATACCACTAGTGTTTTT 58.835 34.615 21.18 6.10 0.00 1.94
3025 5804 8.315482 TGCTGACATATACCACTAGTGTTTTTA 58.685 33.333 21.18 7.97 0.00 1.52
3026 5805 9.158233 GCTGACATATACCACTAGTGTTTTTAA 57.842 33.333 21.18 2.62 0.00 1.52
3049 5828 1.466167 GTGTGTGATGTGCTGATGGTC 59.534 52.381 0.00 0.00 0.00 4.02
3071 5850 2.546368 TGGCTAACGTGTGATGTTGTTC 59.454 45.455 0.00 0.00 0.00 3.18
3074 5853 3.426191 GCTAACGTGTGATGTTGTTCGTA 59.574 43.478 0.00 0.00 0.00 3.43
3081 5860 2.410392 GTGATGTTGTTCGTATGTGCGA 59.590 45.455 0.00 0.00 39.28 5.10
3082 5861 3.060602 TGATGTTGTTCGTATGTGCGAA 58.939 40.909 1.83 1.83 46.78 4.70
3161 5940 1.809684 GGTACTTCAACCTGGTGCTC 58.190 55.000 0.00 0.00 36.53 4.26
3176 5955 2.740714 GCTCATCACGAACGTGGCC 61.741 63.158 23.50 0.00 45.43 5.36
3464 6964 7.201626 GCAGATGGACGTCGTCTTATATACTAT 60.202 40.741 23.69 0.34 39.59 2.12
3465 6965 9.310716 CAGATGGACGTCGTCTTATATACTATA 57.689 37.037 23.69 0.00 39.59 1.31
3466 6966 9.311916 AGATGGACGTCGTCTTATATACTATAC 57.688 37.037 23.69 4.17 38.52 1.47
3493 7015 4.201891 CGAGTAATTACTACAGTGAGCGGT 60.202 45.833 18.03 0.00 36.50 5.68
3505 7027 1.065928 GAGCGGTCGAGTGGTATGG 59.934 63.158 0.00 0.00 0.00 2.74
3575 7097 2.119801 AGGTGCAAGCAGGTTGATAG 57.880 50.000 16.74 0.00 38.60 2.08
3642 7166 1.278985 TGATGGTTGCTGGGTACTGAG 59.721 52.381 0.00 0.00 0.00 3.35
3643 7167 1.279271 GATGGTTGCTGGGTACTGAGT 59.721 52.381 0.00 0.00 0.00 3.41
3644 7168 2.018355 TGGTTGCTGGGTACTGAGTA 57.982 50.000 0.00 0.00 0.00 2.59
3645 7169 1.899814 TGGTTGCTGGGTACTGAGTAG 59.100 52.381 0.00 0.00 0.00 2.57
3646 7170 2.176889 GGTTGCTGGGTACTGAGTAGA 58.823 52.381 0.00 0.00 0.00 2.59
3830 7369 5.993891 CAATCATGGACCTGATTTGTATCG 58.006 41.667 13.41 2.67 41.89 2.92
3834 7378 6.223120 TCATGGACCTGATTTGTATCGTATG 58.777 40.000 0.00 0.00 33.23 2.39
3848 7392 9.710900 TTTGTATCGTATGAGCTTGATGATTAT 57.289 29.630 0.00 0.00 0.00 1.28
3849 7393 8.693542 TGTATCGTATGAGCTTGATGATTATG 57.306 34.615 0.00 0.00 0.00 1.90
3855 7399 7.116805 CGTATGAGCTTGATGATTATGCAAGTA 59.883 37.037 0.00 0.00 40.73 2.24
3858 7402 6.769341 TGAGCTTGATGATTATGCAAGTATGT 59.231 34.615 0.00 0.00 40.73 2.29
3861 7405 6.635641 GCTTGATGATTATGCAAGTATGTGTG 59.364 38.462 0.00 0.00 40.73 3.82
3862 7406 6.063640 TGATGATTATGCAAGTATGTGTGC 57.936 37.500 0.00 0.00 41.29 4.57
3870 7414 3.641648 GCAAGTATGTGTGCAATGTGTT 58.358 40.909 0.00 0.00 40.58 3.32
3874 7443 4.609947 AGTATGTGTGCAATGTGTTTGTG 58.390 39.130 0.00 0.00 37.65 3.33
3880 7449 3.249091 GTGCAATGTGTTTGTGTGTTGA 58.751 40.909 0.00 0.00 37.65 3.18
3887 7456 4.728534 TGTGTTTGTGTGTTGAGTTAAGC 58.271 39.130 0.00 0.00 0.00 3.09
3889 7458 4.793216 GTGTTTGTGTGTTGAGTTAAGCAG 59.207 41.667 0.00 0.00 0.00 4.24
3892 7461 6.127758 TGTTTGTGTGTTGAGTTAAGCAGATT 60.128 34.615 0.00 0.00 0.00 2.40
3940 7509 4.648007 TCCTGCCTGTTGGAGAGT 57.352 55.556 0.00 0.00 34.57 3.24
3958 7527 0.316196 GTGCAAACGCTGAGTGTGAC 60.316 55.000 5.85 0.00 40.58 3.67
3959 7528 1.279840 GCAAACGCTGAGTGTGACC 59.720 57.895 5.85 0.00 40.58 4.02
3983 7552 0.665835 AAAACGCGTGGAAAGCATGA 59.334 45.000 14.98 0.00 43.29 3.07
3985 7554 0.665835 AACGCGTGGAAAGCATGAAA 59.334 45.000 14.98 0.00 43.29 2.69
3996 7565 2.195741 AGCATGAAAGCAGAGCAGAA 57.804 45.000 0.00 0.00 36.85 3.02
4003 7572 1.155042 AAGCAGAGCAGAAAAGCGAG 58.845 50.000 0.00 0.00 40.15 5.03
4017 7586 4.578913 CGAGAGCTTGCTTTCGGA 57.421 55.556 22.36 0.00 0.00 4.55
4018 7587 2.827604 CGAGAGCTTGCTTTCGGAA 58.172 52.632 22.36 0.00 0.00 4.30
4021 7590 2.222908 CGAGAGCTTGCTTTCGGAATTC 60.223 50.000 22.36 0.00 0.00 2.17
4022 7591 1.734465 AGAGCTTGCTTTCGGAATTCG 59.266 47.619 0.00 0.00 40.90 3.34
4024 7593 0.802494 GCTTGCTTTCGGAATTCGGA 59.198 50.000 11.36 11.36 39.77 4.55
4025 7594 1.202076 GCTTGCTTTCGGAATTCGGAG 60.202 52.381 14.48 6.81 39.77 4.63
4026 7595 2.076863 CTTGCTTTCGGAATTCGGAGT 58.923 47.619 14.48 0.00 39.77 3.85
4030 7599 2.678336 GCTTTCGGAATTCGGAGTGATT 59.322 45.455 14.48 0.00 39.77 2.57
4031 7600 3.242446 GCTTTCGGAATTCGGAGTGATTC 60.242 47.826 14.48 0.00 39.77 2.52
4032 7601 3.887621 TTCGGAATTCGGAGTGATTCT 57.112 42.857 14.48 0.00 39.77 2.40
4034 7603 2.159099 TCGGAATTCGGAGTGATTCTGG 60.159 50.000 11.36 0.64 37.75 3.86
4035 7604 2.418746 CGGAATTCGGAGTGATTCTGGT 60.419 50.000 7.20 0.00 35.53 4.00
4036 7605 3.610911 GGAATTCGGAGTGATTCTGGTT 58.389 45.455 0.00 0.00 33.89 3.67
4038 7607 4.459337 GGAATTCGGAGTGATTCTGGTTTT 59.541 41.667 0.00 0.00 33.89 2.43
4039 7608 5.376854 AATTCGGAGTGATTCTGGTTTTG 57.623 39.130 0.00 0.00 32.69 2.44
4040 7609 3.485463 TCGGAGTGATTCTGGTTTTGT 57.515 42.857 0.00 0.00 32.69 2.83
4042 7611 3.563808 TCGGAGTGATTCTGGTTTTGTTG 59.436 43.478 0.00 0.00 32.69 3.33
4043 7612 3.304659 CGGAGTGATTCTGGTTTTGTTGG 60.305 47.826 0.00 0.00 0.00 3.77
4063 7632 3.508840 GAATGGCGCCAAGGACGG 61.509 66.667 36.33 0.00 0.00 4.79
4089 7658 3.879682 CGCCACCGACCATGCATG 61.880 66.667 20.19 20.19 36.29 4.06
4114 7686 4.319766 CGTTTTCACTATAGGCATCATGGC 60.320 45.833 2.08 2.08 44.10 4.40
4167 7739 1.079127 CCGTTACCTGTCTGGCCTG 60.079 63.158 3.32 2.92 40.22 4.85
4169 7741 0.389948 CGTTACCTGTCTGGCCTGAC 60.390 60.000 30.22 30.22 40.22 3.51
4175 7747 1.821061 CTGTCTGGCCTGACCTCGTT 61.821 60.000 32.53 0.00 40.22 3.85
4183 7755 4.351938 TGACCTCGTTGCCGTCCG 62.352 66.667 0.00 0.00 35.01 4.79
4229 7801 1.341802 CGAGTTTGCAGATCGTCGC 59.658 57.895 8.59 0.00 0.00 5.19
4231 7803 2.014093 GAGTTTGCAGATCGTCGCCG 62.014 60.000 2.92 0.00 0.00 6.46
4232 7804 2.813474 TTTGCAGATCGTCGCCGG 60.813 61.111 0.00 0.00 33.95 6.13
4233 7805 4.812476 TTGCAGATCGTCGCCGGG 62.812 66.667 2.18 0.00 33.95 5.73
4268 7847 1.910772 AGGGACAGCGTTGCTCTCT 60.911 57.895 0.00 0.00 36.40 3.10
4269 7848 1.446966 GGGACAGCGTTGCTCTCTC 60.447 63.158 0.00 0.00 36.40 3.20
4270 7849 1.589113 GGACAGCGTTGCTCTCTCT 59.411 57.895 0.00 0.00 36.40 3.10
4271 7850 0.457681 GGACAGCGTTGCTCTCTCTC 60.458 60.000 0.00 0.00 36.40 3.20
4293 7872 1.067416 GGTGATATCGGCTGACGCA 59.933 57.895 0.00 0.00 43.86 5.24
4304 7883 3.647649 CTGACGCACGGCAGGATCA 62.648 63.158 18.13 0.00 46.98 2.92
4306 7885 3.932580 GACGCACGGCAGGATCACA 62.933 63.158 0.00 0.00 0.00 3.58
4310 7889 0.461870 GCACGGCAGGATCACATGTA 60.462 55.000 0.00 0.00 0.00 2.29
4311 7890 1.575244 CACGGCAGGATCACATGTAG 58.425 55.000 0.00 0.00 0.00 2.74
4312 7891 1.134699 CACGGCAGGATCACATGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
4313 7892 2.100749 CACGGCAGGATCACATGTAGTA 59.899 50.000 0.00 0.00 0.00 1.82
4316 7895 2.434336 GGCAGGATCACATGTAGTACCA 59.566 50.000 0.00 0.00 0.00 3.25
4373 7953 4.436998 GGGGACGACGCCACTCAG 62.437 72.222 15.65 0.00 46.50 3.35
4374 7954 3.371063 GGGACGACGCCACTCAGA 61.371 66.667 9.90 0.00 0.00 3.27
4375 7955 2.126424 GGACGACGCCACTCAGAC 60.126 66.667 0.00 0.00 0.00 3.51
4376 7956 2.643272 GACGACGCCACTCAGACA 59.357 61.111 0.00 0.00 0.00 3.41
4378 7958 2.126307 CGACGCCACTCAGACAGG 60.126 66.667 0.00 0.00 0.00 4.00
4380 7960 3.941657 GACGCCACTCAGACAGGCC 62.942 68.421 0.00 0.00 45.56 5.19
4381 7961 4.007644 CGCCACTCAGACAGGCCA 62.008 66.667 5.01 0.00 45.56 5.36
4382 7962 2.673523 GCCACTCAGACAGGCCAT 59.326 61.111 5.01 0.00 42.58 4.40
4383 7963 1.451028 GCCACTCAGACAGGCCATC 60.451 63.158 5.01 1.26 42.58 3.51
4384 7964 1.153489 CCACTCAGACAGGCCATCG 60.153 63.158 5.01 0.00 0.00 3.84
4385 7965 1.607801 CCACTCAGACAGGCCATCGA 61.608 60.000 5.01 3.68 0.00 3.59
4386 7966 0.463204 CACTCAGACAGGCCATCGAT 59.537 55.000 5.01 0.00 0.00 3.59
4387 7967 1.683385 CACTCAGACAGGCCATCGATA 59.317 52.381 5.01 0.00 0.00 2.92
4388 7968 1.959985 ACTCAGACAGGCCATCGATAG 59.040 52.381 5.01 5.28 0.00 2.08
4389 7969 1.959985 CTCAGACAGGCCATCGATAGT 59.040 52.381 5.01 0.00 37.40 2.12
4390 7970 2.363680 CTCAGACAGGCCATCGATAGTT 59.636 50.000 5.01 0.00 37.40 2.24
4391 7971 2.101415 TCAGACAGGCCATCGATAGTTG 59.899 50.000 5.01 0.00 35.59 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.075600 CCTGGTCCTCTCCCCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
2 3 2.041405 CCCTGGTCCTCTCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
4 5 2.782997 TTTCCCCTGGTCCTCTCCCC 62.783 65.000 0.00 0.00 0.00 4.81
20 21 1.561542 TGCCATCCCTTCTCCTCTTTC 59.438 52.381 0.00 0.00 0.00 2.62
22 23 0.915364 GTGCCATCCCTTCTCCTCTT 59.085 55.000 0.00 0.00 0.00 2.85
27 28 1.815003 CAAGTTGTGCCATCCCTTCTC 59.185 52.381 0.00 0.00 0.00 2.87
45 48 1.250154 CCCCTTTGCTTCCATCGCAA 61.250 55.000 0.00 0.00 44.83 4.85
130 134 2.045340 GGGTGATTGGACGGGTGG 60.045 66.667 0.00 0.00 0.00 4.61
131 135 0.748005 GATGGGTGATTGGACGGGTG 60.748 60.000 0.00 0.00 0.00 4.61
132 136 1.607612 GATGGGTGATTGGACGGGT 59.392 57.895 0.00 0.00 0.00 5.28
133 137 1.152963 GGATGGGTGATTGGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
134 138 0.255890 AAGGATGGGTGATTGGACGG 59.744 55.000 0.00 0.00 0.00 4.79
227 2053 1.750778 CCATGATTCTGTTTTCCGGGG 59.249 52.381 0.00 0.00 0.00 5.73
235 2061 1.927487 TTGCCAGCCATGATTCTGTT 58.073 45.000 0.00 0.00 0.00 3.16
260 2086 4.989168 GCGGTAAATGTTGGATCTACTAGG 59.011 45.833 0.00 0.00 0.00 3.02
289 2115 0.524862 ACCACGAGTACGGCTGTAAG 59.475 55.000 7.05 4.83 44.46 2.34
297 2123 2.601763 GCAGGAAATAACCACGAGTACG 59.398 50.000 0.00 0.00 45.75 3.67
300 2126 2.354805 GGAGCAGGAAATAACCACGAGT 60.355 50.000 0.00 0.00 0.00 4.18
303 2129 2.403252 AGGAGCAGGAAATAACCACG 57.597 50.000 0.00 0.00 0.00 4.94
304 2130 3.956744 AGAAGGAGCAGGAAATAACCAC 58.043 45.455 0.00 0.00 0.00 4.16
305 2131 4.335416 CAAGAAGGAGCAGGAAATAACCA 58.665 43.478 0.00 0.00 0.00 3.67
306 2132 3.129462 GCAAGAAGGAGCAGGAAATAACC 59.871 47.826 0.00 0.00 0.00 2.85
307 2133 3.758554 TGCAAGAAGGAGCAGGAAATAAC 59.241 43.478 0.00 0.00 35.51 1.89
308 2134 4.032960 TGCAAGAAGGAGCAGGAAATAA 57.967 40.909 0.00 0.00 35.51 1.40
310 2136 2.592102 TGCAAGAAGGAGCAGGAAAT 57.408 45.000 0.00 0.00 35.51 2.17
311 2137 2.363306 TTGCAAGAAGGAGCAGGAAA 57.637 45.000 0.00 0.00 42.39 3.13
314 2140 1.959282 AGTTTTGCAAGAAGGAGCAGG 59.041 47.619 0.00 0.00 42.39 4.85
328 2154 2.229543 TGCCTATCTGCTTGCAGTTTTG 59.770 45.455 20.20 11.03 0.00 2.44
329 2155 2.517959 TGCCTATCTGCTTGCAGTTTT 58.482 42.857 20.20 10.45 0.00 2.43
330 2156 2.205022 TGCCTATCTGCTTGCAGTTT 57.795 45.000 20.20 12.55 0.00 2.66
331 2157 2.205022 TTGCCTATCTGCTTGCAGTT 57.795 45.000 20.20 15.18 34.81 3.16
332 2158 2.426024 CAATTGCCTATCTGCTTGCAGT 59.574 45.455 20.20 11.40 34.81 4.40
343 2169 9.075678 CCAATCTAGAAAAGATCAATTGCCTAT 57.924 33.333 0.00 0.00 44.56 2.57
345 2171 6.323225 CCCAATCTAGAAAAGATCAATTGCCT 59.677 38.462 0.00 0.00 44.56 4.75
346 2172 6.322201 TCCCAATCTAGAAAAGATCAATTGCC 59.678 38.462 0.00 0.00 44.56 4.52
376 2203 2.329539 AATCGGGGCGCATGATGTCT 62.330 55.000 10.83 0.00 0.00 3.41
378 2205 1.893808 GAATCGGGGCGCATGATGT 60.894 57.895 10.83 0.43 0.00 3.06
379 2206 1.598962 AGAATCGGGGCGCATGATG 60.599 57.895 10.83 0.00 0.00 3.07
391 2218 3.371898 TGCTGCATTCAAGTACAGAATCG 59.628 43.478 0.00 7.78 33.64 3.34
396 2223 6.694411 GGATTATTTGCTGCATTCAAGTACAG 59.306 38.462 1.84 0.00 0.00 2.74
445 2275 3.518705 ACAATGCCCAATAATTTGCTGGA 59.481 39.130 2.55 0.00 31.38 3.86
455 2285 3.198200 ACCAGTACGTACAATGCCCAATA 59.802 43.478 26.55 0.00 0.00 1.90
459 2289 1.066716 TCACCAGTACGTACAATGCCC 60.067 52.381 26.55 0.00 0.00 5.36
460 2290 2.373540 TCACCAGTACGTACAATGCC 57.626 50.000 26.55 0.00 0.00 4.40
535 2368 2.644992 GCACTGTTTGGGCTTCGG 59.355 61.111 0.00 0.00 43.01 4.30
541 2374 1.244019 GCTACCTGGCACTGTTTGGG 61.244 60.000 0.00 0.00 0.00 4.12
560 2393 3.368501 TCCCTCCCTCCCTCCCTG 61.369 72.222 0.00 0.00 0.00 4.45
561 2394 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
562 2395 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
563 2396 3.036959 TCCTCCCTCCCTCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
564 2397 2.612251 CTCCTCCCTCCCTCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
618 2451 1.150567 CGAGCTCTGATGGAAAGCGG 61.151 60.000 12.85 0.00 40.95 5.52
757 2625 4.727475 CCGAGAAAAGAAAAGGAAGATGC 58.273 43.478 0.00 0.00 0.00 3.91
765 2650 0.521735 CCGGGCCGAGAAAAGAAAAG 59.478 55.000 30.79 0.96 0.00 2.27
769 2654 4.404098 GGCCGGGCCGAGAAAAGA 62.404 66.667 30.79 0.00 39.62 2.52
891 2776 3.003173 TTGAGGAGTGGGAGCGGG 61.003 66.667 0.00 0.00 0.00 6.13
892 2777 1.831652 AAGTTGAGGAGTGGGAGCGG 61.832 60.000 0.00 0.00 0.00 5.52
940 2825 4.761058 AGAAGGCGAGGGGAGCGA 62.761 66.667 0.00 0.00 35.00 4.93
947 2838 2.105466 GCAGAGCAAGAAGGCGAGG 61.105 63.158 0.00 0.00 39.27 4.63
1169 3084 3.062466 GCTGGCGGAGGGAAAACC 61.062 66.667 0.00 0.00 40.67 3.27
1187 3109 3.690280 TCATGGTGGAGTCGCGCA 61.690 61.111 8.75 0.00 0.00 6.09
1189 3111 2.880879 CGTCATGGTGGAGTCGCG 60.881 66.667 0.00 0.00 0.00 5.87
1194 3116 0.243907 ACTTCGACGTCATGGTGGAG 59.756 55.000 17.16 5.26 0.00 3.86
1209 3131 3.623863 GAGATCGGATCAGTTCGACTTC 58.376 50.000 19.47 2.07 38.25 3.01
1224 3170 3.484229 GCCAAATCAAGAACACGAGATCG 60.484 47.826 0.00 0.00 46.33 3.69
1351 3297 2.956964 CGGATCTCGAAGCACGCC 60.957 66.667 0.00 0.00 42.43 5.68
1587 3544 0.251787 ATTTGGGTGGGAGTGAAGGC 60.252 55.000 0.00 0.00 0.00 4.35
1588 3545 1.355720 AGATTTGGGTGGGAGTGAAGG 59.644 52.381 0.00 0.00 0.00 3.46
1589 3546 2.619074 GGAGATTTGGGTGGGAGTGAAG 60.619 54.545 0.00 0.00 0.00 3.02
1590 3547 1.354368 GGAGATTTGGGTGGGAGTGAA 59.646 52.381 0.00 0.00 0.00 3.18
1591 3548 0.991920 GGAGATTTGGGTGGGAGTGA 59.008 55.000 0.00 0.00 0.00 3.41
1592 3549 0.034089 GGGAGATTTGGGTGGGAGTG 60.034 60.000 0.00 0.00 0.00 3.51
1593 3550 1.562672 CGGGAGATTTGGGTGGGAGT 61.563 60.000 0.00 0.00 0.00 3.85
1594 3551 1.224592 CGGGAGATTTGGGTGGGAG 59.775 63.158 0.00 0.00 0.00 4.30
1599 3556 1.304134 GTTGGCGGGAGATTTGGGT 60.304 57.895 0.00 0.00 0.00 4.51
1630 3589 0.676782 TTTTCTAGGCAAGCGGAGGC 60.677 55.000 0.00 0.00 40.37 4.70
1633 3592 3.692593 GGTAAATTTTCTAGGCAAGCGGA 59.307 43.478 0.00 0.00 0.00 5.54
1634 3593 3.181490 GGGTAAATTTTCTAGGCAAGCGG 60.181 47.826 0.00 0.00 0.00 5.52
1649 3608 3.352648 CATCCCGTTGACTTGGGTAAAT 58.647 45.455 0.00 0.00 46.13 1.40
1656 3616 1.238439 AACAGCATCCCGTTGACTTG 58.762 50.000 0.00 0.00 0.00 3.16
1664 3628 0.804989 GACCAAGAAACAGCATCCCG 59.195 55.000 0.00 0.00 0.00 5.14
1716 3695 3.802866 TGGCCGCAAAAGAAAAGAAAAT 58.197 36.364 0.00 0.00 0.00 1.82
1811 3815 4.832608 GATGGGGACGGACGGTGC 62.833 72.222 0.00 0.00 36.02 5.01
1812 3816 2.644555 GATGATGGGGACGGACGGTG 62.645 65.000 0.00 0.00 0.00 4.94
1813 3817 2.365105 ATGATGGGGACGGACGGT 60.365 61.111 0.00 0.00 0.00 4.83
1824 3829 6.594788 TCTTTTCCTTTTTCCTGATGATGG 57.405 37.500 0.00 0.00 0.00 3.51
1825 3830 9.148104 GATTTCTTTTCCTTTTTCCTGATGATG 57.852 33.333 0.00 0.00 0.00 3.07
1826 3831 9.097946 AGATTTCTTTTCCTTTTTCCTGATGAT 57.902 29.630 0.00 0.00 0.00 2.45
1827 3832 8.362639 CAGATTTCTTTTCCTTTTTCCTGATGA 58.637 33.333 0.00 0.00 0.00 2.92
1828 3833 8.146412 ACAGATTTCTTTTCCTTTTTCCTGATG 58.854 33.333 0.00 0.00 0.00 3.07
1829 3834 8.255111 ACAGATTTCTTTTCCTTTTTCCTGAT 57.745 30.769 0.00 0.00 0.00 2.90
1830 3835 7.561356 AGACAGATTTCTTTTCCTTTTTCCTGA 59.439 33.333 0.00 0.00 0.00 3.86
1871 3881 5.334879 CGGCGAGGATAAGGGAAATTAATTG 60.335 44.000 0.00 0.00 0.00 2.32
1927 3949 8.764524 AGTTCAGAGATTTTGTACATAGTGTC 57.235 34.615 0.00 0.00 0.00 3.67
2055 4100 5.449486 TGGTACAACTACTACGTGCCACG 62.449 52.174 16.94 16.94 40.00 4.94
2067 4112 7.230108 CCGTTCTATTCTATCCTGGTACAACTA 59.770 40.741 0.00 0.00 38.70 2.24
2068 4113 6.040616 CCGTTCTATTCTATCCTGGTACAACT 59.959 42.308 0.00 0.00 38.70 3.16
2069 4114 6.040166 TCCGTTCTATTCTATCCTGGTACAAC 59.960 42.308 0.00 0.00 38.70 3.32
2070 4115 6.131264 TCCGTTCTATTCTATCCTGGTACAA 58.869 40.000 0.00 0.00 38.70 2.41
2071 4116 5.698104 TCCGTTCTATTCTATCCTGGTACA 58.302 41.667 0.00 0.00 0.00 2.90
2072 4117 6.645790 TTCCGTTCTATTCTATCCTGGTAC 57.354 41.667 0.00 0.00 0.00 3.34
2073 4118 5.243283 GCTTCCGTTCTATTCTATCCTGGTA 59.757 44.000 0.00 0.00 0.00 3.25
2086 4131 2.126228 CGTGCCGCTTCCGTTCTA 60.126 61.111 0.00 0.00 0.00 2.10
2148 4194 8.242053 ACACATAGATTCAGAAAAGAAATGCTG 58.758 33.333 0.00 0.00 0.00 4.41
2273 4607 2.588034 GTAATGGCGGGCCGAGTC 60.588 66.667 33.44 18.37 39.42 3.36
2389 4901 0.708918 GAAACGAAAGAGACGCCGAG 59.291 55.000 0.00 0.00 0.00 4.63
2417 4929 0.462581 TGATCAGCATTGACGCCTCC 60.463 55.000 0.00 0.00 35.83 4.30
2419 4931 0.463295 CCTGATCAGCATTGACGCCT 60.463 55.000 17.76 0.00 35.83 5.52
2441 4958 6.477688 CCAAACGAGACAAAAACAGTCTAGTA 59.522 38.462 9.00 0.00 46.53 1.82
2443 4960 5.738370 CCAAACGAGACAAAAACAGTCTAG 58.262 41.667 0.00 0.00 45.79 2.43
2446 4963 3.105937 GCCAAACGAGACAAAAACAGTC 58.894 45.455 0.00 0.00 36.26 3.51
2459 4976 4.614078 CGCCTAAACATTAAAGCCAAACGA 60.614 41.667 0.00 0.00 0.00 3.85
2487 5007 0.247736 GAGATCGCCAGACACCAACT 59.752 55.000 0.00 0.00 0.00 3.16
2488 5008 1.078759 CGAGATCGCCAGACACCAAC 61.079 60.000 0.00 0.00 0.00 3.77
2489 5009 1.215382 CGAGATCGCCAGACACCAA 59.785 57.895 0.00 0.00 0.00 3.67
2500 5020 0.910513 CAGAAACAGCGTCGAGATCG 59.089 55.000 0.00 0.00 41.45 3.69
2534 5054 1.439644 CTCCCTCGCTAACCAGAGC 59.560 63.158 0.00 0.00 39.20 4.09
2600 5124 1.134371 GGATGTTCCTCCCAGCACTAC 60.134 57.143 0.00 0.00 32.53 2.73
2602 5126 0.842030 TGGATGTTCCTCCCAGCACT 60.842 55.000 0.00 0.00 37.46 4.40
2603 5127 0.038166 TTGGATGTTCCTCCCAGCAC 59.962 55.000 0.00 0.00 37.46 4.40
2665 5195 0.036294 GCCCTACACAGTGGGTTCTC 60.036 60.000 1.77 0.00 45.06 2.87
2727 5342 3.164977 TCACACCACGAGCCCCAA 61.165 61.111 0.00 0.00 0.00 4.12
2728 5343 3.625897 CTCACACCACGAGCCCCA 61.626 66.667 0.00 0.00 0.00 4.96
2729 5344 4.394712 CCTCACACCACGAGCCCC 62.395 72.222 0.00 0.00 0.00 5.80
2766 5386 2.183046 GACGGAGCAGTGGAGAGC 59.817 66.667 0.00 0.00 0.00 4.09
2812 5445 4.329545 TCAGTCCAAGCACGGCCC 62.330 66.667 0.00 0.00 0.00 5.80
2817 5450 2.358737 CCCGGTCAGTCCAAGCAC 60.359 66.667 0.00 0.00 35.57 4.40
2823 5526 2.124695 GGCATTCCCGGTCAGTCC 60.125 66.667 0.00 0.00 0.00 3.85
2874 5577 2.025418 GGTTCACGCGTGGTACTGG 61.025 63.158 36.41 11.89 0.00 4.00
2876 5579 1.006571 CTGGTTCACGCGTGGTACT 60.007 57.895 36.41 0.00 0.00 2.73
2877 5580 2.664436 GCTGGTTCACGCGTGGTAC 61.664 63.158 36.41 30.74 0.00 3.34
2878 5581 2.356553 GCTGGTTCACGCGTGGTA 60.357 61.111 36.41 22.96 0.00 3.25
2936 5695 4.720680 ATTTGGGGTGGCAGGGGC 62.721 66.667 0.00 0.00 40.13 5.80
2937 5696 0.252467 TAAATTTGGGGTGGCAGGGG 60.252 55.000 0.00 0.00 0.00 4.79
2975 5751 5.975410 AACATAAGCAGAGAGTTAATCGC 57.025 39.130 0.00 0.00 0.00 4.58
2976 5752 6.684555 GCAAAACATAAGCAGAGAGTTAATCG 59.315 38.462 0.00 0.00 0.00 3.34
2986 5765 7.012327 GGTATATGTCAGCAAAACATAAGCAGA 59.988 37.037 9.11 0.00 41.54 4.26
2988 5767 6.601217 TGGTATATGTCAGCAAAACATAAGCA 59.399 34.615 9.11 10.49 41.54 3.91
2992 5771 8.482943 ACTAGTGGTATATGTCAGCAAAACATA 58.517 33.333 0.00 7.89 42.20 2.29
2996 5775 6.707290 ACACTAGTGGTATATGTCAGCAAAA 58.293 36.000 26.12 0.00 34.19 2.44
3008 5787 7.771826 ACACACAGTTAAAAACACTAGTGGTAT 59.228 33.333 26.12 14.99 35.40 2.73
3009 5788 7.064847 CACACACAGTTAAAAACACTAGTGGTA 59.935 37.037 26.12 10.19 35.40 3.25
3010 5789 5.941647 ACACACAGTTAAAAACACTAGTGGT 59.058 36.000 26.12 18.46 35.40 4.16
3011 5790 6.092944 TCACACACAGTTAAAAACACTAGTGG 59.907 38.462 26.12 9.07 35.40 4.00
3012 5791 7.067532 TCACACACAGTTAAAAACACTAGTG 57.932 36.000 21.44 21.44 36.37 2.74
3013 5792 7.335924 ACATCACACACAGTTAAAAACACTAGT 59.664 33.333 0.00 0.00 0.00 2.57
3014 5793 7.639850 CACATCACACACAGTTAAAAACACTAG 59.360 37.037 0.00 0.00 0.00 2.57
3015 5794 7.468441 CACATCACACACAGTTAAAAACACTA 58.532 34.615 0.00 0.00 0.00 2.74
3016 5795 6.321717 CACATCACACACAGTTAAAAACACT 58.678 36.000 0.00 0.00 0.00 3.55
3017 5796 5.004345 GCACATCACACACAGTTAAAAACAC 59.996 40.000 0.00 0.00 0.00 3.32
3018 5797 5.098893 GCACATCACACACAGTTAAAAACA 58.901 37.500 0.00 0.00 0.00 2.83
3019 5798 5.229887 CAGCACATCACACACAGTTAAAAAC 59.770 40.000 0.00 0.00 0.00 2.43
3020 5799 5.124617 TCAGCACATCACACACAGTTAAAAA 59.875 36.000 0.00 0.00 0.00 1.94
3022 5801 4.195416 TCAGCACATCACACACAGTTAAA 58.805 39.130 0.00 0.00 0.00 1.52
3024 5803 3.467374 TCAGCACATCACACACAGTTA 57.533 42.857 0.00 0.00 0.00 2.24
3025 5804 2.330440 TCAGCACATCACACACAGTT 57.670 45.000 0.00 0.00 0.00 3.16
3026 5805 2.148768 CATCAGCACATCACACACAGT 58.851 47.619 0.00 0.00 0.00 3.55
3027 5806 1.467342 CCATCAGCACATCACACACAG 59.533 52.381 0.00 0.00 0.00 3.66
3049 5828 2.143122 ACAACATCACACGTTAGCCAG 58.857 47.619 0.00 0.00 0.00 4.85
3071 5850 4.550965 CGCACATTCGCACATACG 57.449 55.556 0.00 0.00 0.00 3.06
3161 5940 3.487202 CCGGCCACGTTCGTGATG 61.487 66.667 23.84 13.49 38.30 3.07
3464 6964 7.042187 GCTCACTGTAGTAATTACTCGCTAGTA 60.042 40.741 21.25 0.00 37.73 1.82
3465 6965 6.238429 GCTCACTGTAGTAATTACTCGCTAGT 60.238 42.308 21.25 16.58 37.73 2.57
3466 6966 6.137415 GCTCACTGTAGTAATTACTCGCTAG 58.863 44.000 21.25 16.04 37.73 3.42
3493 7015 0.611200 CACCAACCCATACCACTCGA 59.389 55.000 0.00 0.00 0.00 4.04
3527 7049 4.624364 TCACAGGCCACGCACCAG 62.624 66.667 5.01 0.00 0.00 4.00
3575 7097 7.155655 AGACTTTTACTGCTACTACTGGTAC 57.844 40.000 0.00 0.00 0.00 3.34
3642 7166 2.548067 CCACTCCACACAACCACTCTAC 60.548 54.545 0.00 0.00 0.00 2.59
3643 7167 1.691976 CCACTCCACACAACCACTCTA 59.308 52.381 0.00 0.00 0.00 2.43
3644 7168 0.469917 CCACTCCACACAACCACTCT 59.530 55.000 0.00 0.00 0.00 3.24
3645 7169 0.180406 ACCACTCCACACAACCACTC 59.820 55.000 0.00 0.00 0.00 3.51
3646 7170 0.107214 CACCACTCCACACAACCACT 60.107 55.000 0.00 0.00 0.00 4.00
3685 7209 1.447489 CTCCCACTCTTCAGCTGCG 60.447 63.158 9.47 2.34 0.00 5.18
3697 7221 3.701604 CTACACTCGCCGCTCCCAC 62.702 68.421 0.00 0.00 0.00 4.61
3805 7335 4.051661 ACAAATCAGGTCCATGATTGGT 57.948 40.909 8.49 8.49 46.64 3.67
3806 7336 5.049198 CGATACAAATCAGGTCCATGATTGG 60.049 44.000 7.83 7.58 46.64 3.16
3830 7369 7.199541 ACTTGCATAATCATCAAGCTCATAC 57.800 36.000 0.00 0.00 40.45 2.39
3834 7378 7.076362 CACATACTTGCATAATCATCAAGCTC 58.924 38.462 0.00 0.00 40.45 4.09
3848 7392 2.622470 ACACATTGCACACATACTTGCA 59.378 40.909 0.00 0.00 46.93 4.08
3849 7393 3.287312 ACACATTGCACACATACTTGC 57.713 42.857 0.00 0.00 39.33 4.01
3855 7399 3.188492 CACACAAACACATTGCACACAT 58.812 40.909 0.00 0.00 43.13 3.21
3858 7402 2.991866 CAACACACAAACACATTGCACA 59.008 40.909 0.00 0.00 43.13 4.57
3861 7405 3.510719 ACTCAACACACAAACACATTGC 58.489 40.909 0.00 0.00 43.13 3.56
3862 7406 6.237542 GCTTAACTCAACACACAAACACATTG 60.238 38.462 0.00 0.00 44.95 2.82
3863 7407 5.804979 GCTTAACTCAACACACAAACACATT 59.195 36.000 0.00 0.00 0.00 2.71
3864 7408 5.105957 TGCTTAACTCAACACACAAACACAT 60.106 36.000 0.00 0.00 0.00 3.21
3865 7409 4.216472 TGCTTAACTCAACACACAAACACA 59.784 37.500 0.00 0.00 0.00 3.72
3867 7411 4.697828 TCTGCTTAACTCAACACACAAACA 59.302 37.500 0.00 0.00 0.00 2.83
3868 7412 5.229921 TCTGCTTAACTCAACACACAAAC 57.770 39.130 0.00 0.00 0.00 2.93
3870 7414 6.264832 CAAATCTGCTTAACTCAACACACAA 58.735 36.000 0.00 0.00 0.00 3.33
3887 7456 1.651240 CCCACGGAGCTGCAAATCTG 61.651 60.000 5.91 5.33 0.00 2.90
3889 7458 3.056313 GCCCACGGAGCTGCAAATC 62.056 63.158 5.91 0.00 0.00 2.17
3892 7461 4.349503 ATGCCCACGGAGCTGCAA 62.350 61.111 5.91 0.00 37.27 4.08
3895 7464 2.513204 CTGATGCCCACGGAGCTG 60.513 66.667 0.00 0.00 0.00 4.24
3923 7492 2.061220 CACTCTCCAACAGGCAGGA 58.939 57.895 0.00 0.00 0.00 3.86
3940 7509 1.436195 GGTCACACTCAGCGTTTGCA 61.436 55.000 0.00 0.00 46.23 4.08
3983 7552 1.534595 CTCGCTTTTCTGCTCTGCTTT 59.465 47.619 0.00 0.00 0.00 3.51
3985 7554 0.319728 TCTCGCTTTTCTGCTCTGCT 59.680 50.000 0.00 0.00 0.00 4.24
4003 7572 1.202076 CCGAATTCCGAAAGCAAGCTC 60.202 52.381 0.00 0.00 41.76 4.09
4007 7576 1.804151 CACTCCGAATTCCGAAAGCAA 59.196 47.619 0.00 0.00 41.76 3.91
4010 7579 4.033358 CAGAATCACTCCGAATTCCGAAAG 59.967 45.833 0.00 0.00 41.76 2.62
4011 7580 3.932710 CAGAATCACTCCGAATTCCGAAA 59.067 43.478 0.00 0.00 41.76 3.46
4012 7581 3.521560 CAGAATCACTCCGAATTCCGAA 58.478 45.455 0.00 0.00 41.76 4.30
4013 7582 2.159099 CCAGAATCACTCCGAATTCCGA 60.159 50.000 0.00 0.00 41.76 4.55
4015 7584 3.268023 ACCAGAATCACTCCGAATTCC 57.732 47.619 0.00 0.00 0.00 3.01
4016 7585 5.048713 ACAAAACCAGAATCACTCCGAATTC 60.049 40.000 0.00 0.00 0.00 2.17
4017 7586 4.827284 ACAAAACCAGAATCACTCCGAATT 59.173 37.500 0.00 0.00 0.00 2.17
4018 7587 4.398319 ACAAAACCAGAATCACTCCGAAT 58.602 39.130 0.00 0.00 0.00 3.34
4021 7590 3.304659 CCAACAAAACCAGAATCACTCCG 60.305 47.826 0.00 0.00 0.00 4.63
4022 7591 3.005791 CCCAACAAAACCAGAATCACTCC 59.994 47.826 0.00 0.00 0.00 3.85
4024 7593 3.891366 CTCCCAACAAAACCAGAATCACT 59.109 43.478 0.00 0.00 0.00 3.41
4025 7594 3.888930 TCTCCCAACAAAACCAGAATCAC 59.111 43.478 0.00 0.00 0.00 3.06
4026 7595 4.177537 TCTCCCAACAAAACCAGAATCA 57.822 40.909 0.00 0.00 0.00 2.57
4030 7599 3.230134 CCATTCTCCCAACAAAACCAGA 58.770 45.455 0.00 0.00 0.00 3.86
4031 7600 2.289010 GCCATTCTCCCAACAAAACCAG 60.289 50.000 0.00 0.00 0.00 4.00
4032 7601 1.691434 GCCATTCTCCCAACAAAACCA 59.309 47.619 0.00 0.00 0.00 3.67
4034 7603 1.934849 GCGCCATTCTCCCAACAAAAC 60.935 52.381 0.00 0.00 0.00 2.43
4035 7604 0.316841 GCGCCATTCTCCCAACAAAA 59.683 50.000 0.00 0.00 0.00 2.44
4036 7605 1.531739 GGCGCCATTCTCCCAACAAA 61.532 55.000 24.80 0.00 0.00 2.83
4038 7607 2.361104 GGCGCCATTCTCCCAACA 60.361 61.111 24.80 0.00 0.00 3.33
4039 7608 1.937546 CTTGGCGCCATTCTCCCAAC 61.938 60.000 33.25 0.00 33.99 3.77
4040 7609 1.678635 CTTGGCGCCATTCTCCCAA 60.679 57.895 33.25 12.02 36.08 4.12
4042 7611 2.830370 CCTTGGCGCCATTCTCCC 60.830 66.667 33.25 0.00 0.00 4.30
4043 7612 2.115291 GTCCTTGGCGCCATTCTCC 61.115 63.158 33.25 13.83 0.00 3.71
4072 7641 3.879682 CATGCATGGTCGGTGGCG 61.880 66.667 19.40 0.00 0.00 5.69
4089 7658 3.202906 TGATGCCTATAGTGAAAACGGC 58.797 45.455 0.00 0.00 38.01 5.68
4119 7691 1.301244 ACAAGGACGCTGCAGAGTG 60.301 57.895 28.44 15.42 35.66 3.51
4196 7768 1.519455 CTCGCTTCTGCCTTACCCG 60.519 63.158 0.00 0.00 35.36 5.28
4200 7772 1.156736 GCAAACTCGCTTCTGCCTTA 58.843 50.000 0.00 0.00 35.36 2.69
4231 7803 2.031465 TTCGTTTGACTCGGGCCC 59.969 61.111 13.57 13.57 0.00 5.80
4232 7804 1.566018 CTGTTCGTTTGACTCGGGCC 61.566 60.000 0.00 0.00 0.00 5.80
4233 7805 1.566018 CCTGTTCGTTTGACTCGGGC 61.566 60.000 0.00 0.00 0.00 6.13
4234 7806 0.949105 CCCTGTTCGTTTGACTCGGG 60.949 60.000 0.00 0.00 0.00 5.14
4238 7810 1.810412 GCTGTCCCTGTTCGTTTGACT 60.810 52.381 0.00 0.00 0.00 3.41
4240 7812 0.878523 CGCTGTCCCTGTTCGTTTGA 60.879 55.000 0.00 0.00 0.00 2.69
4246 7825 1.569479 GAGCAACGCTGTCCCTGTTC 61.569 60.000 0.00 0.00 39.88 3.18
4293 7872 1.195115 ACTACATGTGATCCTGCCGT 58.805 50.000 9.11 0.00 0.00 5.68
4304 7883 3.587797 CACGAAGGTGGTACTACATGT 57.412 47.619 11.80 2.69 40.58 3.21
4316 7895 4.733523 GCATTTTGACTTTGACACGAAGGT 60.734 41.667 0.00 0.00 0.00 3.50
4368 7948 1.959985 CTATCGATGGCCTGTCTGAGT 59.040 52.381 8.54 0.00 0.00 3.41
4369 7949 1.959985 ACTATCGATGGCCTGTCTGAG 59.040 52.381 8.54 0.00 0.00 3.35
4370 7950 2.073252 ACTATCGATGGCCTGTCTGA 57.927 50.000 8.54 5.17 0.00 3.27
4371 7951 2.477825 CAACTATCGATGGCCTGTCTG 58.522 52.381 8.54 0.00 0.00 3.51
4372 7952 1.414181 CCAACTATCGATGGCCTGTCT 59.586 52.381 8.54 0.00 0.00 3.41
4373 7953 1.412710 TCCAACTATCGATGGCCTGTC 59.587 52.381 8.54 0.83 36.62 3.51
4374 7954 1.496060 TCCAACTATCGATGGCCTGT 58.504 50.000 8.54 0.00 36.62 4.00
4375 7955 2.847327 ATCCAACTATCGATGGCCTG 57.153 50.000 8.54 6.33 36.62 4.85
4376 7956 3.239449 TGTATCCAACTATCGATGGCCT 58.761 45.455 8.54 0.00 36.62 5.19
4378 7958 3.990469 CACTGTATCCAACTATCGATGGC 59.010 47.826 8.54 0.00 36.62 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.