Multiple sequence alignment - TraesCS5D01G493400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G493400 chr5D 100.000 1938 0 0 1 1938 526122209 526120272 0.000000e+00 3579.0
1 TraesCS5D01G493400 chr5D 100.000 217 0 0 2360 2576 526119850 526119634 3.990000e-108 401.0
2 TraesCS5D01G493400 chr5D 87.168 226 28 1 1 226 542699511 542699287 3.290000e-64 255.0
3 TraesCS5D01G493400 chr5B 95.013 762 35 3 1 761 661207136 661206377 0.000000e+00 1194.0
4 TraesCS5D01G493400 chr5B 90.270 925 32 14 766 1657 661206278 661205379 0.000000e+00 1157.0
5 TraesCS5D01G493400 chr5A 88.670 609 44 10 960 1548 653282008 653281405 0.000000e+00 719.0
6 TraesCS5D01G493400 chr5A 88.670 609 44 10 960 1548 653284640 653284037 0.000000e+00 719.0
7 TraesCS5D01G493400 chr5A 86.656 622 57 7 960 1558 653287273 653286655 0.000000e+00 665.0
8 TraesCS5D01G493400 chr5A 82.222 765 80 21 230 963 653283042 653282303 2.190000e-170 608.0
9 TraesCS5D01G493400 chr5A 82.222 765 80 21 230 963 653285674 653284935 2.190000e-170 608.0
10 TraesCS5D01G493400 chr5A 80.315 381 51 14 230 609 653289588 653289231 1.520000e-67 267.0
11 TraesCS5D01G493400 chr5A 90.991 111 6 1 857 963 653287680 653287570 2.070000e-31 147.0
12 TraesCS5D01G493400 chr5A 92.784 97 7 0 1664 1760 483536194 483536290 9.610000e-30 141.0
13 TraesCS5D01G493400 chr5A 82.946 129 9 5 1530 1657 653281349 653281233 1.260000e-18 104.0
14 TraesCS5D01G493400 chr5A 97.917 48 1 0 813 860 653287926 653287879 1.640000e-12 84.2
15 TraesCS5D01G493400 chr2B 97.664 214 5 0 2363 2576 26769822 26769609 4.050000e-98 368.0
16 TraesCS5D01G493400 chr2B 87.923 207 24 1 20 226 89330869 89331074 2.560000e-60 243.0
17 TraesCS5D01G493400 chr2B 83.482 224 30 7 2 225 598969815 598970031 4.350000e-48 202.0
18 TraesCS5D01G493400 chr3B 97.196 214 6 0 2363 2576 590312898 590313111 1.880000e-96 363.0
19 TraesCS5D01G493400 chr1B 96.262 214 8 0 2363 2576 190415912 190416125 4.080000e-93 351.0
20 TraesCS5D01G493400 chr2A 95.327 214 10 0 2363 2576 761957472 761957685 8.830000e-90 340.0
21 TraesCS5D01G493400 chr2A 90.099 101 8 2 1661 1760 366651054 366650955 2.080000e-26 130.0
22 TraesCS5D01G493400 chr6B 95.305 213 10 0 2364 2576 134496300 134496088 3.180000e-89 339.0
23 TraesCS5D01G493400 chr6B 82.456 228 37 3 1 226 624777647 624777421 2.020000e-46 196.0
24 TraesCS5D01G493400 chr2D 95.327 214 9 1 2363 2576 563200505 563200293 3.180000e-89 339.0
25 TraesCS5D01G493400 chr4D 94.860 214 10 1 2363 2576 276153059 276153271 1.480000e-87 333.0
26 TraesCS5D01G493400 chr7D 93.925 214 12 1 2363 2576 409176966 409177178 3.200000e-84 322.0
27 TraesCS5D01G493400 chr7D 93.458 214 12 2 2363 2576 2014971 2014760 1.490000e-82 316.0
28 TraesCS5D01G493400 chr7D 87.946 224 26 1 2 225 269717162 269717384 1.970000e-66 263.0
29 TraesCS5D01G493400 chr7D 79.433 282 28 12 1658 1938 596548753 596549005 3.410000e-39 172.0
30 TraesCS5D01G493400 chr1D 85.022 227 31 2 1 226 477288515 477288739 7.170000e-56 228.0
31 TraesCS5D01G493400 chr1D 79.433 282 28 12 1658 1938 149046416 149046668 3.410000e-39 172.0
32 TraesCS5D01G493400 chr1D 82.734 139 14 6 1658 1795 288784508 288784637 5.820000e-22 115.0
33 TraesCS5D01G493400 chr3D 83.544 237 36 3 1 236 395665896 395665662 4.320000e-53 219.0
34 TraesCS5D01G493400 chr3D 82.819 227 37 2 1 226 428249808 428250033 4.350000e-48 202.0
35 TraesCS5D01G493400 chr3D 88.889 108 11 1 1831 1938 232924501 232924395 5.780000e-27 132.0
36 TraesCS5D01G493400 chr3D 76.894 264 36 11 1658 1920 232924756 232924517 2.690000e-25 126.0
37 TraesCS5D01G493400 chr7B 93.000 100 7 0 1661 1760 685057950 685058049 2.070000e-31 147.0
38 TraesCS5D01G493400 chr7B 92.424 66 3 2 1874 1938 363248461 363248525 2.730000e-15 93.5
39 TraesCS5D01G493400 chr7A 91.262 103 9 0 1658 1760 687156722 687156824 9.610000e-30 141.0
40 TraesCS5D01G493400 chr4A 92.784 97 7 0 1664 1760 58837045 58836949 9.610000e-30 141.0
41 TraesCS5D01G493400 chr4A 91.753 97 8 0 1664 1760 104135695 104135599 4.470000e-28 135.0
42 TraesCS5D01G493400 chr4A 91.753 97 8 0 1664 1760 613658283 613658379 4.470000e-28 135.0
43 TraesCS5D01G493400 chr3A 91.346 104 7 2 1658 1760 6715135 6715237 9.610000e-30 141.0
44 TraesCS5D01G493400 chr3A 92.784 97 6 1 1664 1760 6726131 6726226 3.460000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G493400 chr5D 526119634 526122209 2575 True 1990.000000 3579 100.000000 1 2576 2 chr5D.!!$R2 2575
1 TraesCS5D01G493400 chr5B 661205379 661207136 1757 True 1175.500000 1194 92.641500 1 1657 2 chr5B.!!$R1 1656
2 TraesCS5D01G493400 chr5A 653281233 653289588 8355 True 435.688889 719 86.734333 230 1657 9 chr5A.!!$R1 1427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.392193 CATCAGGTCCAGAGTGCCAC 60.392 60.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 9000 0.1023 GACACACCAGTTGTTTGGCC 59.898 55.0 0.0 0.0 42.18 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.669440 GTCAGGTACGAGCACCCAA 59.331 57.895 0.00 0.00 39.62 4.12
29 30 2.215196 GAGCACCCAACAACTACGAAA 58.785 47.619 0.00 0.00 0.00 3.46
58 59 4.882671 ATGGCAAGTTTAGTTATGCGAG 57.117 40.909 0.00 0.00 39.66 5.03
114 115 8.539674 ACTTTCGTGCTTCATTTTATTTTTGAC 58.460 29.630 0.00 0.00 0.00 3.18
172 173 1.648467 GCGTGACTGGAATTGCCCTC 61.648 60.000 0.00 0.00 34.97 4.30
173 174 1.361668 CGTGACTGGAATTGCCCTCG 61.362 60.000 0.00 0.00 34.97 4.63
188 189 2.084546 CCCTCGAAAAACATCAGGTCC 58.915 52.381 0.00 0.00 0.00 4.46
198 199 0.392193 CATCAGGTCCAGAGTGCCAC 60.392 60.000 0.00 0.00 0.00 5.01
466 467 4.523083 GTGTCCTGCCTAATCCATTTGTA 58.477 43.478 0.00 0.00 0.00 2.41
518 519 1.303561 GTGCTGCCAAGGATGACCA 60.304 57.895 0.00 0.00 38.94 4.02
523 524 1.479323 CTGCCAAGGATGACCAATTGG 59.521 52.381 23.31 23.31 41.55 3.16
561 562 2.106684 GGATTGGGGAGGTGGAGATAAC 59.893 54.545 0.00 0.00 0.00 1.89
592 594 9.811655 GACGGTATATATGTGACAAAATTGATG 57.188 33.333 0.00 0.00 0.00 3.07
628 630 8.942338 ATAATAGATTTGCTCTCGTTACAACA 57.058 30.769 0.00 0.00 35.28 3.33
736 4654 1.821216 GGCTTTTCAGTCCGGATTCA 58.179 50.000 7.81 0.00 0.00 2.57
761 4679 3.053917 ACCGGCTAAATTCCAATGTACCT 60.054 43.478 0.00 0.00 0.00 3.08
763 4681 4.514066 CCGGCTAAATTCCAATGTACCTAC 59.486 45.833 0.00 0.00 0.00 3.18
774 4786 7.600231 TCCAATGTACCTACGGTATCATTTA 57.400 36.000 13.34 6.88 40.54 1.40
788 4806 8.429641 ACGGTATCATTTATTGGTTACTCTGAT 58.570 33.333 0.00 0.00 0.00 2.90
897 4919 0.525761 CGGTGGTACCAATTTGGCAG 59.474 55.000 18.31 0.00 42.67 4.85
982 7946 0.974383 CCGCCTATAAATCCGTCCCT 59.026 55.000 0.00 0.00 0.00 4.20
1048 8013 3.399440 AGAAGAAGCATCCATCGATCC 57.601 47.619 0.00 0.00 0.00 3.36
1525 8528 2.010817 GCGCGCAAAACTTCACCTG 61.011 57.895 29.10 0.00 0.00 4.00
1535 8538 5.642063 GCAAAACTTCACCTGTGCTACTATA 59.358 40.000 0.00 0.00 0.00 1.31
1591 8678 7.820044 GTACTGACTTGTACTAGTACGTACT 57.180 40.000 29.62 29.62 40.25 2.73
1592 8679 6.718454 ACTGACTTGTACTAGTACGTACTG 57.282 41.667 33.23 24.68 40.25 2.74
1657 8744 2.222027 CTGTTGGAGTGTTGGTCTTCC 58.778 52.381 0.00 0.00 0.00 3.46
1658 8745 1.843851 TGTTGGAGTGTTGGTCTTCCT 59.156 47.619 0.00 0.00 34.23 3.36
1659 8746 2.241176 TGTTGGAGTGTTGGTCTTCCTT 59.759 45.455 0.00 0.00 34.23 3.36
1660 8747 3.288092 GTTGGAGTGTTGGTCTTCCTTT 58.712 45.455 0.00 0.00 34.23 3.11
1661 8748 3.208747 TGGAGTGTTGGTCTTCCTTTC 57.791 47.619 0.00 0.00 34.23 2.62
1662 8749 2.158667 TGGAGTGTTGGTCTTCCTTTCC 60.159 50.000 0.00 0.00 34.23 3.13
1663 8750 2.158667 GGAGTGTTGGTCTTCCTTTCCA 60.159 50.000 0.00 0.00 34.23 3.53
1664 8751 3.498661 GGAGTGTTGGTCTTCCTTTCCAT 60.499 47.826 0.00 0.00 34.23 3.41
1665 8752 4.263331 GGAGTGTTGGTCTTCCTTTCCATA 60.263 45.833 0.00 0.00 34.23 2.74
1666 8753 5.313712 GAGTGTTGGTCTTCCTTTCCATAA 58.686 41.667 0.00 0.00 34.23 1.90
1667 8754 5.892348 AGTGTTGGTCTTCCTTTCCATAAT 58.108 37.500 0.00 0.00 34.23 1.28
1668 8755 7.027874 AGTGTTGGTCTTCCTTTCCATAATA 57.972 36.000 0.00 0.00 34.23 0.98
1669 8756 7.466804 AGTGTTGGTCTTCCTTTCCATAATAA 58.533 34.615 0.00 0.00 34.23 1.40
1670 8757 8.116026 AGTGTTGGTCTTCCTTTCCATAATAAT 58.884 33.333 0.00 0.00 34.23 1.28
1671 8758 9.403583 GTGTTGGTCTTCCTTTCCATAATAATA 57.596 33.333 0.00 0.00 34.23 0.98
1672 8759 9.983024 TGTTGGTCTTCCTTTCCATAATAATAA 57.017 29.630 0.00 0.00 34.23 1.40
1675 8762 9.131791 TGGTCTTCCTTTCCATAATAATAAAGC 57.868 33.333 0.00 0.00 34.23 3.51
1676 8763 9.131791 GGTCTTCCTTTCCATAATAATAAAGCA 57.868 33.333 0.00 0.00 0.00 3.91
1677 8764 9.952188 GTCTTCCTTTCCATAATAATAAAGCAC 57.048 33.333 0.00 0.00 0.00 4.40
1678 8765 8.836413 TCTTCCTTTCCATAATAATAAAGCACG 58.164 33.333 0.00 0.00 0.00 5.34
1679 8766 7.504924 TCCTTTCCATAATAATAAAGCACGG 57.495 36.000 0.00 0.00 0.00 4.94
1680 8767 7.284074 TCCTTTCCATAATAATAAAGCACGGA 58.716 34.615 0.00 0.00 0.00 4.69
1681 8768 7.942341 TCCTTTCCATAATAATAAAGCACGGAT 59.058 33.333 0.00 0.00 0.00 4.18
1682 8769 8.576442 CCTTTCCATAATAATAAAGCACGGATT 58.424 33.333 0.00 0.00 0.00 3.01
1683 8770 9.398170 CTTTCCATAATAATAAAGCACGGATTG 57.602 33.333 0.00 0.00 0.00 2.67
1684 8771 8.684386 TTCCATAATAATAAAGCACGGATTGA 57.316 30.769 0.00 0.00 0.00 2.57
1685 8772 8.094798 TCCATAATAATAAAGCACGGATTGAC 57.905 34.615 0.00 0.00 0.00 3.18
1686 8773 7.936847 TCCATAATAATAAAGCACGGATTGACT 59.063 33.333 0.00 0.00 0.00 3.41
1687 8774 8.230486 CCATAATAATAAAGCACGGATTGACTC 58.770 37.037 0.00 0.00 0.00 3.36
1688 8775 6.619801 AATAATAAAGCACGGATTGACTCC 57.380 37.500 0.00 0.00 41.07 3.85
1700 8787 3.797256 GGATTGACTCCGTAAGTTCATCG 59.203 47.826 0.00 0.00 38.74 3.84
1701 8788 3.928727 TTGACTCCGTAAGTTCATCGT 57.071 42.857 0.00 0.00 38.74 3.73
1702 8789 3.482722 TGACTCCGTAAGTTCATCGTC 57.517 47.619 0.00 0.00 38.74 4.20
1703 8790 2.815503 TGACTCCGTAAGTTCATCGTCA 59.184 45.455 0.00 0.00 38.74 4.35
1704 8791 3.442625 TGACTCCGTAAGTTCATCGTCAT 59.557 43.478 0.00 0.00 38.74 3.06
1705 8792 4.637091 TGACTCCGTAAGTTCATCGTCATA 59.363 41.667 0.00 0.00 38.74 2.15
1706 8793 5.124297 TGACTCCGTAAGTTCATCGTCATAA 59.876 40.000 0.00 0.00 38.74 1.90
1707 8794 6.145338 ACTCCGTAAGTTCATCGTCATAAT 57.855 37.500 0.00 0.00 33.03 1.28
1708 8795 7.012610 TGACTCCGTAAGTTCATCGTCATAATA 59.987 37.037 0.00 0.00 38.74 0.98
1709 8796 7.137426 ACTCCGTAAGTTCATCGTCATAATAC 58.863 38.462 0.00 0.00 33.03 1.89
1710 8797 6.138088 TCCGTAAGTTCATCGTCATAATACG 58.862 40.000 0.00 0.00 44.19 3.06
1711 8798 5.164215 CCGTAAGTTCATCGTCATAATACGC 60.164 44.000 0.00 0.00 42.56 4.42
1712 8799 5.624081 CGTAAGTTCATCGTCATAATACGCT 59.376 40.000 0.00 0.00 42.56 5.07
1713 8800 6.141844 CGTAAGTTCATCGTCATAATACGCTT 59.858 38.462 0.00 0.00 42.56 4.68
1714 8801 6.512177 AAGTTCATCGTCATAATACGCTTC 57.488 37.500 0.00 0.00 42.56 3.86
1715 8802 5.833082 AGTTCATCGTCATAATACGCTTCT 58.167 37.500 0.00 0.00 42.56 2.85
1716 8803 6.273825 AGTTCATCGTCATAATACGCTTCTT 58.726 36.000 0.00 0.00 42.56 2.52
1717 8804 6.418226 AGTTCATCGTCATAATACGCTTCTTC 59.582 38.462 0.00 0.00 42.56 2.87
1718 8805 5.220381 TCATCGTCATAATACGCTTCTTCC 58.780 41.667 0.00 0.00 42.56 3.46
1719 8806 3.973657 TCGTCATAATACGCTTCTTCCC 58.026 45.455 0.00 0.00 42.56 3.97
1720 8807 2.724690 CGTCATAATACGCTTCTTCCCG 59.275 50.000 0.00 0.00 35.87 5.14
1721 8808 3.714391 GTCATAATACGCTTCTTCCCGT 58.286 45.455 0.00 0.00 41.11 5.28
1722 8809 3.489785 GTCATAATACGCTTCTTCCCGTG 59.510 47.826 0.00 0.00 38.28 4.94
1723 8810 3.382227 TCATAATACGCTTCTTCCCGTGA 59.618 43.478 0.00 0.00 38.28 4.35
1724 8811 2.754946 AATACGCTTCTTCCCGTGAA 57.245 45.000 0.00 0.00 38.28 3.18
1725 8812 2.981859 ATACGCTTCTTCCCGTGAAT 57.018 45.000 0.00 0.00 38.28 2.57
1726 8813 2.754946 TACGCTTCTTCCCGTGAATT 57.245 45.000 0.00 0.00 38.28 2.17
1727 8814 1.892209 ACGCTTCTTCCCGTGAATTT 58.108 45.000 0.00 0.00 36.18 1.82
1728 8815 3.048337 ACGCTTCTTCCCGTGAATTTA 57.952 42.857 0.00 0.00 36.18 1.40
1729 8816 2.740447 ACGCTTCTTCCCGTGAATTTAC 59.260 45.455 0.00 0.00 36.18 2.01
1730 8817 2.222729 CGCTTCTTCCCGTGAATTTACG 60.223 50.000 15.24 15.24 43.35 3.18
1731 8818 2.740447 GCTTCTTCCCGTGAATTTACGT 59.260 45.455 19.72 0.00 42.24 3.57
1732 8819 3.187842 GCTTCTTCCCGTGAATTTACGTT 59.812 43.478 19.72 0.00 42.24 3.99
1733 8820 4.319984 GCTTCTTCCCGTGAATTTACGTTT 60.320 41.667 19.72 0.00 42.24 3.60
1734 8821 5.754543 TTCTTCCCGTGAATTTACGTTTT 57.245 34.783 19.72 0.00 42.24 2.43
1735 8822 5.347012 TCTTCCCGTGAATTTACGTTTTC 57.653 39.130 19.72 0.00 42.24 2.29
1736 8823 4.815308 TCTTCCCGTGAATTTACGTTTTCA 59.185 37.500 19.72 0.00 42.24 2.69
1737 8824 4.735662 TCCCGTGAATTTACGTTTTCAG 57.264 40.909 19.72 5.01 42.24 3.02
1738 8825 4.128643 TCCCGTGAATTTACGTTTTCAGT 58.871 39.130 19.72 0.00 42.24 3.41
1739 8826 4.575645 TCCCGTGAATTTACGTTTTCAGTT 59.424 37.500 19.72 0.00 42.24 3.16
1740 8827 5.066246 TCCCGTGAATTTACGTTTTCAGTTT 59.934 36.000 19.72 0.00 42.24 2.66
1741 8828 5.744819 CCCGTGAATTTACGTTTTCAGTTTT 59.255 36.000 19.72 0.00 42.24 2.43
1742 8829 6.253942 CCCGTGAATTTACGTTTTCAGTTTTT 59.746 34.615 19.72 0.00 42.24 1.94
1779 8866 9.854668 TTATTTTGATATTTTCTACATCCGGGA 57.145 29.630 0.00 0.00 0.00 5.14
1780 8867 8.940397 ATTTTGATATTTTCTACATCCGGGAT 57.060 30.769 2.97 2.97 0.00 3.85
1781 8868 7.744087 TTTGATATTTTCTACATCCGGGATG 57.256 36.000 30.68 30.68 44.71 3.51
1782 8869 5.804639 TGATATTTTCTACATCCGGGATGG 58.195 41.667 33.93 20.74 43.60 3.51
1783 8870 5.309543 TGATATTTTCTACATCCGGGATGGT 59.690 40.000 33.93 23.29 43.60 3.55
1784 8871 6.499000 TGATATTTTCTACATCCGGGATGGTA 59.501 38.462 33.93 23.18 43.60 3.25
1785 8872 5.843019 ATTTTCTACATCCGGGATGGTAT 57.157 39.130 33.93 19.70 43.60 2.73
1786 8873 5.640158 TTTTCTACATCCGGGATGGTATT 57.360 39.130 33.93 19.38 43.60 1.89
1787 8874 6.750660 TTTTCTACATCCGGGATGGTATTA 57.249 37.500 33.93 19.45 43.60 0.98
1788 8875 6.945636 TTTCTACATCCGGGATGGTATTAT 57.054 37.500 33.93 18.42 43.60 1.28
1789 8876 6.945636 TTCTACATCCGGGATGGTATTATT 57.054 37.500 33.93 17.79 43.60 1.40
1790 8877 6.945636 TCTACATCCGGGATGGTATTATTT 57.054 37.500 33.93 17.15 43.60 1.40
1791 8878 7.324388 TCTACATCCGGGATGGTATTATTTT 57.676 36.000 33.93 16.53 43.60 1.82
1792 8879 8.438618 TCTACATCCGGGATGGTATTATTTTA 57.561 34.615 33.93 16.73 43.60 1.52
1793 8880 8.316214 TCTACATCCGGGATGGTATTATTTTAC 58.684 37.037 33.93 0.00 43.60 2.01
1794 8881 6.243148 ACATCCGGGATGGTATTATTTTACC 58.757 40.000 33.93 0.00 43.60 2.85
1806 8893 8.684520 TGGTATTATTTTACCACCGTAATTTGG 58.315 33.333 0.00 0.00 45.23 3.28
1808 8895 9.720667 GTATTATTTTACCACCGTAATTTGGTC 57.279 33.333 2.77 0.00 42.86 4.02
1809 8896 5.648178 ATTTTACCACCGTAATTTGGTCC 57.352 39.130 2.77 0.00 42.86 4.46
1810 8897 2.383368 TACCACCGTAATTTGGTCCG 57.617 50.000 2.77 0.00 42.86 4.79
1811 8898 0.397564 ACCACCGTAATTTGGTCCGT 59.602 50.000 0.00 0.00 42.86 4.69
1812 8899 1.081094 CCACCGTAATTTGGTCCGTC 58.919 55.000 0.00 0.00 37.72 4.79
1813 8900 1.081094 CACCGTAATTTGGTCCGTCC 58.919 55.000 0.00 0.00 37.72 4.79
1814 8901 0.686224 ACCGTAATTTGGTCCGTCCA 59.314 50.000 0.00 0.00 45.60 4.02
1826 8913 3.622826 CGTCCACCCCGTCCAGTT 61.623 66.667 0.00 0.00 0.00 3.16
1827 8914 2.833957 GTCCACCCCGTCCAGTTT 59.166 61.111 0.00 0.00 0.00 2.66
1828 8915 1.149854 GTCCACCCCGTCCAGTTTT 59.850 57.895 0.00 0.00 0.00 2.43
1829 8916 0.887836 GTCCACCCCGTCCAGTTTTC 60.888 60.000 0.00 0.00 0.00 2.29
1830 8917 1.149627 CCACCCCGTCCAGTTTTCA 59.850 57.895 0.00 0.00 0.00 2.69
1831 8918 0.889186 CCACCCCGTCCAGTTTTCAG 60.889 60.000 0.00 0.00 0.00 3.02
1832 8919 0.107831 CACCCCGTCCAGTTTTCAGA 59.892 55.000 0.00 0.00 0.00 3.27
1833 8920 0.841289 ACCCCGTCCAGTTTTCAGAA 59.159 50.000 0.00 0.00 0.00 3.02
1834 8921 1.213430 ACCCCGTCCAGTTTTCAGAAA 59.787 47.619 0.00 0.00 0.00 2.52
1835 8922 2.303175 CCCCGTCCAGTTTTCAGAAAA 58.697 47.619 4.06 4.06 0.00 2.29
1836 8923 2.691011 CCCCGTCCAGTTTTCAGAAAAA 59.309 45.455 10.00 0.00 31.13 1.94
1859 8946 8.770438 AAAATAATAATGACAAATTGGCACGT 57.230 26.923 2.50 0.00 38.83 4.49
1860 8947 9.862371 AAAATAATAATGACAAATTGGCACGTA 57.138 25.926 2.50 0.00 38.83 3.57
1861 8948 8.850454 AATAATAATGACAAATTGGCACGTAC 57.150 30.769 2.50 0.00 38.83 3.67
1862 8949 5.888691 ATAATGACAAATTGGCACGTACA 57.111 34.783 2.50 0.00 38.83 2.90
1863 8950 3.829886 ATGACAAATTGGCACGTACAG 57.170 42.857 2.50 0.00 38.83 2.74
1864 8951 1.876799 TGACAAATTGGCACGTACAGG 59.123 47.619 0.00 0.00 24.43 4.00
1865 8952 2.147958 GACAAATTGGCACGTACAGGA 58.852 47.619 0.00 0.00 0.00 3.86
1866 8953 2.151202 ACAAATTGGCACGTACAGGAG 58.849 47.619 0.00 0.00 0.00 3.69
1867 8954 2.151202 CAAATTGGCACGTACAGGAGT 58.849 47.619 0.00 0.00 0.00 3.85
1868 8955 2.552315 CAAATTGGCACGTACAGGAGTT 59.448 45.455 0.00 0.00 0.00 3.01
1869 8956 1.808411 ATTGGCACGTACAGGAGTTG 58.192 50.000 0.00 0.00 0.00 3.16
1870 8957 0.753867 TTGGCACGTACAGGAGTTGA 59.246 50.000 0.00 0.00 0.00 3.18
1871 8958 0.753867 TGGCACGTACAGGAGTTGAA 59.246 50.000 0.00 0.00 0.00 2.69
1872 8959 1.145803 GGCACGTACAGGAGTTGAAC 58.854 55.000 0.00 0.00 0.00 3.18
1873 8960 1.539496 GGCACGTACAGGAGTTGAACA 60.539 52.381 0.00 0.00 0.00 3.18
1874 8961 1.525619 GCACGTACAGGAGTTGAACAC 59.474 52.381 0.00 0.00 0.00 3.32
1875 8962 2.816689 CACGTACAGGAGTTGAACACA 58.183 47.619 0.00 0.00 0.00 3.72
1876 8963 2.538449 CACGTACAGGAGTTGAACACAC 59.462 50.000 0.00 0.00 0.00 3.82
1877 8964 2.166870 ACGTACAGGAGTTGAACACACA 59.833 45.455 0.00 0.00 0.00 3.72
1878 8965 3.191669 CGTACAGGAGTTGAACACACAA 58.808 45.455 0.00 0.00 0.00 3.33
1879 8966 3.000925 CGTACAGGAGTTGAACACACAAC 59.999 47.826 0.00 0.00 46.97 3.32
1885 8972 2.287393 GTTGAACACACAACCAACCC 57.713 50.000 0.00 0.00 42.68 4.11
1886 8973 1.134936 GTTGAACACACAACCAACCCC 60.135 52.381 0.00 0.00 42.68 4.95
1887 8974 0.333312 TGAACACACAACCAACCCCT 59.667 50.000 0.00 0.00 0.00 4.79
1888 8975 1.272760 TGAACACACAACCAACCCCTT 60.273 47.619 0.00 0.00 0.00 3.95
1889 8976 1.407618 GAACACACAACCAACCCCTTC 59.592 52.381 0.00 0.00 0.00 3.46
1890 8977 0.333312 ACACACAACCAACCCCTTCA 59.667 50.000 0.00 0.00 0.00 3.02
1891 8978 1.032014 CACACAACCAACCCCTTCAG 58.968 55.000 0.00 0.00 0.00 3.02
1892 8979 0.106217 ACACAACCAACCCCTTCAGG 60.106 55.000 0.00 0.00 0.00 3.86
1904 8991 1.467920 CCTTCAGGGTTGCAATCTCC 58.532 55.000 10.07 8.83 0.00 3.71
1905 8992 1.272092 CCTTCAGGGTTGCAATCTCCA 60.272 52.381 10.07 0.00 0.00 3.86
1906 8993 2.089980 CTTCAGGGTTGCAATCTCCAG 58.910 52.381 10.07 6.14 0.00 3.86
1907 8994 0.322816 TCAGGGTTGCAATCTCCAGC 60.323 55.000 10.07 0.00 0.00 4.85
1908 8995 1.000396 AGGGTTGCAATCTCCAGCC 60.000 57.895 10.07 1.35 33.36 4.85
1909 8996 1.304381 GGGTTGCAATCTCCAGCCA 60.304 57.895 10.07 0.00 35.53 4.75
1910 8997 1.598701 GGGTTGCAATCTCCAGCCAC 61.599 60.000 10.07 0.00 35.53 5.01
1911 8998 1.503542 GTTGCAATCTCCAGCCACG 59.496 57.895 0.59 0.00 0.00 4.94
1912 8999 1.675310 TTGCAATCTCCAGCCACGG 60.675 57.895 0.00 0.00 0.00 4.94
1913 9000 2.825836 GCAATCTCCAGCCACGGG 60.826 66.667 0.00 0.00 0.00 5.28
1914 9001 2.124570 CAATCTCCAGCCACGGGG 60.125 66.667 0.00 0.00 37.18 5.73
1924 9011 2.520741 CCACGGGGCCAAACAACT 60.521 61.111 4.39 0.00 0.00 3.16
1925 9012 2.727544 CACGGGGCCAAACAACTG 59.272 61.111 4.39 0.00 0.00 3.16
1926 9013 2.520741 ACGGGGCCAAACAACTGG 60.521 61.111 4.39 0.00 39.71 4.00
1927 9014 2.520741 CGGGGCCAAACAACTGGT 60.521 61.111 4.39 0.00 38.86 4.00
1928 9015 2.855514 CGGGGCCAAACAACTGGTG 61.856 63.158 4.39 0.00 38.86 4.17
1929 9016 1.760480 GGGGCCAAACAACTGGTGT 60.760 57.895 4.39 0.00 44.64 4.16
1930 9017 1.441311 GGGCCAAACAACTGGTGTG 59.559 57.895 4.39 0.00 40.60 3.82
1931 9018 1.326951 GGGCCAAACAACTGGTGTGT 61.327 55.000 4.39 0.00 40.60 3.72
1932 9019 0.102300 GGCCAAACAACTGGTGTGTC 59.898 55.000 0.00 0.00 40.60 3.67
1933 9020 1.102978 GCCAAACAACTGGTGTGTCT 58.897 50.000 0.00 0.00 40.60 3.41
1934 9021 2.294074 GCCAAACAACTGGTGTGTCTA 58.706 47.619 0.00 0.00 40.60 2.59
1935 9022 2.685897 GCCAAACAACTGGTGTGTCTAA 59.314 45.455 0.00 0.00 40.60 2.10
1936 9023 3.317993 GCCAAACAACTGGTGTGTCTAAT 59.682 43.478 0.00 0.00 40.60 1.73
1937 9024 4.202111 GCCAAACAACTGGTGTGTCTAATT 60.202 41.667 0.00 0.00 40.60 1.40
2388 9475 2.231215 GCATCTTGCCTATCTGTCGT 57.769 50.000 0.00 0.00 37.42 4.34
2389 9476 2.555199 GCATCTTGCCTATCTGTCGTT 58.445 47.619 0.00 0.00 37.42 3.85
2390 9477 2.286294 GCATCTTGCCTATCTGTCGTTG 59.714 50.000 0.00 0.00 37.42 4.10
2391 9478 2.672961 TCTTGCCTATCTGTCGTTGG 57.327 50.000 0.00 0.00 0.00 3.77
2392 9479 2.176045 TCTTGCCTATCTGTCGTTGGA 58.824 47.619 0.00 0.00 0.00 3.53
2393 9480 2.766263 TCTTGCCTATCTGTCGTTGGAT 59.234 45.455 0.00 0.00 0.00 3.41
2394 9481 2.890808 TGCCTATCTGTCGTTGGATC 57.109 50.000 0.00 0.00 0.00 3.36
2395 9482 1.067060 TGCCTATCTGTCGTTGGATCG 59.933 52.381 0.00 0.00 0.00 3.69
2396 9483 1.067212 GCCTATCTGTCGTTGGATCGT 59.933 52.381 0.00 0.00 0.00 3.73
2397 9484 2.732366 CCTATCTGTCGTTGGATCGTG 58.268 52.381 0.00 0.00 0.00 4.35
2398 9485 2.099263 CCTATCTGTCGTTGGATCGTGT 59.901 50.000 0.00 0.00 0.00 4.49
2399 9486 2.743636 ATCTGTCGTTGGATCGTGTT 57.256 45.000 0.00 0.00 0.00 3.32
2400 9487 2.519377 TCTGTCGTTGGATCGTGTTT 57.481 45.000 0.00 0.00 0.00 2.83
2401 9488 3.646611 TCTGTCGTTGGATCGTGTTTA 57.353 42.857 0.00 0.00 0.00 2.01
2402 9489 3.571571 TCTGTCGTTGGATCGTGTTTAG 58.428 45.455 0.00 0.00 0.00 1.85
2403 9490 2.063266 TGTCGTTGGATCGTGTTTAGC 58.937 47.619 0.00 0.00 0.00 3.09
2404 9491 1.058695 GTCGTTGGATCGTGTTTAGCG 59.941 52.381 0.00 0.00 0.00 4.26
2405 9492 1.068402 TCGTTGGATCGTGTTTAGCGA 60.068 47.619 0.00 0.00 42.75 4.93
2416 9503 6.954616 TCGTGTTTAGCGATTGATTTAGAA 57.045 33.333 0.00 0.00 33.09 2.10
2417 9504 7.354025 TCGTGTTTAGCGATTGATTTAGAAA 57.646 32.000 0.00 0.00 33.09 2.52
2418 9505 7.231607 TCGTGTTTAGCGATTGATTTAGAAAC 58.768 34.615 0.00 0.00 33.09 2.78
2419 9506 7.117236 TCGTGTTTAGCGATTGATTTAGAAACT 59.883 33.333 0.00 0.00 33.09 2.66
2420 9507 8.377681 CGTGTTTAGCGATTGATTTAGAAACTA 58.622 33.333 0.00 0.00 0.00 2.24
2421 9508 9.690434 GTGTTTAGCGATTGATTTAGAAACTAG 57.310 33.333 0.00 0.00 0.00 2.57
2422 9509 9.431887 TGTTTAGCGATTGATTTAGAAACTAGT 57.568 29.630 0.00 0.00 0.00 2.57
2423 9510 9.690434 GTTTAGCGATTGATTTAGAAACTAGTG 57.310 33.333 0.00 0.00 0.00 2.74
2424 9511 9.647797 TTTAGCGATTGATTTAGAAACTAGTGA 57.352 29.630 0.00 0.00 0.00 3.41
2425 9512 9.647797 TTAGCGATTGATTTAGAAACTAGTGAA 57.352 29.630 0.00 0.00 0.00 3.18
2426 9513 8.547967 AGCGATTGATTTAGAAACTAGTGAAA 57.452 30.769 0.00 0.00 0.00 2.69
2427 9514 8.999431 AGCGATTGATTTAGAAACTAGTGAAAA 58.001 29.630 0.00 0.00 0.00 2.29
2428 9515 9.774742 GCGATTGATTTAGAAACTAGTGAAAAT 57.225 29.630 0.00 0.59 0.00 1.82
2431 9518 9.860898 ATTGATTTAGAAACTAGTGAAAATGGC 57.139 29.630 0.00 0.00 0.00 4.40
2432 9519 8.635765 TGATTTAGAAACTAGTGAAAATGGCT 57.364 30.769 0.00 0.00 0.00 4.75
2433 9520 9.077885 TGATTTAGAAACTAGTGAAAATGGCTT 57.922 29.630 0.00 0.00 0.00 4.35
2439 9526 9.696917 AGAAACTAGTGAAAATGGCTTAATTTG 57.303 29.630 0.00 0.00 30.21 2.32
2440 9527 8.831715 AAACTAGTGAAAATGGCTTAATTTGG 57.168 30.769 0.00 0.00 30.21 3.28
2441 9528 6.398095 ACTAGTGAAAATGGCTTAATTTGGC 58.602 36.000 0.00 0.00 30.21 4.52
2442 9529 5.226194 AGTGAAAATGGCTTAATTTGGCA 57.774 34.783 9.19 9.19 43.90 4.92
2443 9530 5.240121 AGTGAAAATGGCTTAATTTGGCAG 58.760 37.500 11.67 0.00 43.06 4.85
2444 9531 4.392754 GTGAAAATGGCTTAATTTGGCAGG 59.607 41.667 11.67 0.00 43.06 4.85
2445 9532 2.696989 AATGGCTTAATTTGGCAGGC 57.303 45.000 11.67 4.16 43.06 4.85
2446 9533 1.870064 ATGGCTTAATTTGGCAGGCT 58.130 45.000 11.67 0.00 43.06 4.58
2447 9534 1.643310 TGGCTTAATTTGGCAGGCTT 58.357 45.000 0.00 0.00 35.04 4.35
2448 9535 1.977129 TGGCTTAATTTGGCAGGCTTT 59.023 42.857 0.00 0.00 35.04 3.51
2449 9536 3.169099 TGGCTTAATTTGGCAGGCTTTA 58.831 40.909 0.00 0.00 35.04 1.85
2450 9537 3.580458 TGGCTTAATTTGGCAGGCTTTAA 59.420 39.130 0.00 0.00 35.04 1.52
2451 9538 4.224818 TGGCTTAATTTGGCAGGCTTTAAT 59.775 37.500 0.00 0.00 35.04 1.40
2452 9539 5.185454 GGCTTAATTTGGCAGGCTTTAATT 58.815 37.500 0.00 2.07 0.00 1.40
2453 9540 5.294306 GGCTTAATTTGGCAGGCTTTAATTC 59.706 40.000 0.00 0.00 0.00 2.17
2454 9541 6.108687 GCTTAATTTGGCAGGCTTTAATTCT 58.891 36.000 0.00 0.00 0.00 2.40
2455 9542 6.595326 GCTTAATTTGGCAGGCTTTAATTCTT 59.405 34.615 0.00 0.00 0.00 2.52
2456 9543 7.119699 GCTTAATTTGGCAGGCTTTAATTCTTT 59.880 33.333 0.00 0.00 0.00 2.52
2457 9544 9.651913 CTTAATTTGGCAGGCTTTAATTCTTTA 57.348 29.630 0.00 0.00 0.00 1.85
2460 9547 8.722480 ATTTGGCAGGCTTTAATTCTTTAATC 57.278 30.769 0.00 0.00 0.00 1.75
2461 9548 6.849085 TGGCAGGCTTTAATTCTTTAATCA 57.151 33.333 0.00 0.00 0.00 2.57
2462 9549 7.422465 TGGCAGGCTTTAATTCTTTAATCAT 57.578 32.000 0.00 0.00 0.00 2.45
2463 9550 7.850193 TGGCAGGCTTTAATTCTTTAATCATT 58.150 30.769 0.00 0.00 0.00 2.57
2464 9551 7.981225 TGGCAGGCTTTAATTCTTTAATCATTC 59.019 33.333 0.00 0.00 0.00 2.67
2465 9552 7.439356 GGCAGGCTTTAATTCTTTAATCATTCC 59.561 37.037 0.00 0.00 0.00 3.01
2466 9553 7.981225 GCAGGCTTTAATTCTTTAATCATTCCA 59.019 33.333 0.00 0.00 0.00 3.53
2469 9556 8.768019 GGCTTTAATTCTTTAATCATTCCATGC 58.232 33.333 0.00 0.00 0.00 4.06
2470 9557 9.316730 GCTTTAATTCTTTAATCATTCCATGCA 57.683 29.630 0.00 0.00 0.00 3.96
2473 9560 7.724305 AATTCTTTAATCATTCCATGCATGC 57.276 32.000 21.69 11.82 0.00 4.06
2474 9561 5.855740 TCTTTAATCATTCCATGCATGCA 57.144 34.783 25.04 25.04 0.00 3.96
2475 9562 6.413783 TCTTTAATCATTCCATGCATGCAT 57.586 33.333 27.46 27.46 37.08 3.96
2483 9570 3.229652 CATGCATGCATGTCACGTC 57.770 52.632 40.30 10.36 46.20 4.34
2484 9571 0.448593 CATGCATGCATGTCACGTCA 59.551 50.000 40.30 15.59 46.20 4.35
2485 9572 1.064952 CATGCATGCATGTCACGTCAT 59.935 47.619 40.30 17.07 46.20 3.06
2486 9573 2.021355 TGCATGCATGTCACGTCATA 57.979 45.000 26.79 0.54 0.00 2.15
2487 9574 1.935199 TGCATGCATGTCACGTCATAG 59.065 47.619 26.79 0.00 0.00 2.23
2488 9575 2.204237 GCATGCATGTCACGTCATAGA 58.796 47.619 26.79 0.00 0.00 1.98
2489 9576 2.609002 GCATGCATGTCACGTCATAGAA 59.391 45.455 26.79 0.00 0.00 2.10
2490 9577 3.063861 GCATGCATGTCACGTCATAGAAA 59.936 43.478 26.79 0.00 0.00 2.52
2491 9578 4.437255 GCATGCATGTCACGTCATAGAAAA 60.437 41.667 26.79 0.00 0.00 2.29
2492 9579 4.926860 TGCATGTCACGTCATAGAAAAG 57.073 40.909 0.00 0.00 0.00 2.27
2493 9580 3.684305 TGCATGTCACGTCATAGAAAAGG 59.316 43.478 0.00 0.00 0.00 3.11
2494 9581 3.932710 GCATGTCACGTCATAGAAAAGGA 59.067 43.478 0.00 0.00 0.00 3.36
2495 9582 4.391830 GCATGTCACGTCATAGAAAAGGAA 59.608 41.667 0.00 0.00 0.00 3.36
2496 9583 5.446473 GCATGTCACGTCATAGAAAAGGAAG 60.446 44.000 0.00 0.00 0.00 3.46
2497 9584 4.566004 TGTCACGTCATAGAAAAGGAAGG 58.434 43.478 0.00 0.00 0.00 3.46
2498 9585 4.282449 TGTCACGTCATAGAAAAGGAAGGA 59.718 41.667 0.00 0.00 0.00 3.36
2499 9586 5.221561 TGTCACGTCATAGAAAAGGAAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
2500 9587 5.699458 GTCACGTCATAGAAAAGGAAGGAAA 59.301 40.000 0.00 0.00 0.00 3.13
2501 9588 6.371825 GTCACGTCATAGAAAAGGAAGGAAAT 59.628 38.462 0.00 0.00 0.00 2.17
2502 9589 6.940298 TCACGTCATAGAAAAGGAAGGAAATT 59.060 34.615 0.00 0.00 0.00 1.82
2503 9590 8.098286 TCACGTCATAGAAAAGGAAGGAAATTA 58.902 33.333 0.00 0.00 0.00 1.40
2504 9591 8.726988 CACGTCATAGAAAAGGAAGGAAATTAA 58.273 33.333 0.00 0.00 0.00 1.40
2505 9592 9.292195 ACGTCATAGAAAAGGAAGGAAATTAAA 57.708 29.630 0.00 0.00 0.00 1.52
2573 9660 9.991906 ATAGCACTTATTTATTCGTAGGCTAAA 57.008 29.630 0.00 0.00 34.30 1.85
2574 9661 8.904099 AGCACTTATTTATTCGTAGGCTAAAT 57.096 30.769 0.00 0.00 32.41 1.40
2575 9662 8.989980 AGCACTTATTTATTCGTAGGCTAAATC 58.010 33.333 0.00 0.00 31.03 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.146270 CAAAAATAAAATGAAGCACGAAAGTTG 57.854 29.630 0.00 0.00 46.40 3.16
114 115 2.845967 GTGAACACACGACAAGCTTTTG 59.154 45.455 0.00 0.00 0.00 2.44
172 173 3.187227 CACTCTGGACCTGATGTTTTTCG 59.813 47.826 0.96 0.00 0.00 3.46
173 174 3.057946 GCACTCTGGACCTGATGTTTTTC 60.058 47.826 0.96 0.00 0.00 2.29
437 438 1.541310 TTAGGCAGGACACCCAGACG 61.541 60.000 0.00 0.00 31.17 4.18
443 444 2.689983 CAAATGGATTAGGCAGGACACC 59.310 50.000 0.00 0.00 0.00 4.16
480 481 5.050769 AGCACTCGTAATAAGATTTGATGCG 60.051 40.000 0.00 0.00 33.51 4.73
518 519 2.897271 TGTCACCACCTATGCCAATT 57.103 45.000 0.00 0.00 0.00 2.32
523 524 2.418368 TCCAATGTCACCACCTATGC 57.582 50.000 0.00 0.00 0.00 3.14
561 562 5.305139 TGTCACATATATACCGTCATCCG 57.695 43.478 0.00 0.00 0.00 4.18
592 594 9.331282 AGAGCAAATCTATTATAGTGGTTCAAC 57.669 33.333 0.00 0.00 36.10 3.18
628 630 3.583086 AGTGGTTACCTAACTGCTCATGT 59.417 43.478 2.07 0.00 36.47 3.21
698 4616 2.501881 CCGCGGTTTCTTTTTCGTATG 58.498 47.619 19.50 0.00 0.00 2.39
715 4633 1.305930 AATCCGGACTGAAAAGCCGC 61.306 55.000 6.12 0.00 43.52 6.53
736 4654 2.025321 ACATTGGAATTTAGCCGGTCCT 60.025 45.455 1.90 0.00 0.00 3.85
761 4679 8.916062 TCAGAGTAACCAATAAATGATACCGTA 58.084 33.333 0.00 0.00 0.00 4.02
763 4681 8.833231 ATCAGAGTAACCAATAAATGATACCG 57.167 34.615 0.00 0.00 0.00 4.02
774 4786 3.384668 CGCGATGATCAGAGTAACCAAT 58.615 45.455 0.00 0.00 0.00 3.16
788 4806 1.725641 ACAGAGAAAATGCGCGATGA 58.274 45.000 12.10 0.00 0.00 2.92
897 4919 2.185608 GCGAGCTCAAGGTCTCCC 59.814 66.667 15.40 0.00 40.17 4.30
1048 8013 0.239082 TTGTTGCTGCTCGAATGCTG 59.761 50.000 0.00 0.00 35.44 4.41
1386 8387 2.049156 CGCAGACCAAGAGCACGA 60.049 61.111 0.00 0.00 0.00 4.35
1406 8407 2.801631 GGTCGGGGATCTGAGGCTG 61.802 68.421 0.00 0.00 0.00 4.85
1525 8528 8.618702 TTAGGCGGATAGATATATAGTAGCAC 57.381 38.462 0.00 0.00 0.00 4.40
1573 8660 6.294176 CCAAACCAGTACGTACTAGTACAAGT 60.294 42.308 26.95 21.25 46.85 3.16
1574 8661 6.072508 TCCAAACCAGTACGTACTAGTACAAG 60.073 42.308 26.95 17.28 46.85 3.16
1575 8662 5.767665 TCCAAACCAGTACGTACTAGTACAA 59.232 40.000 26.95 15.44 46.85 2.41
1576 8663 5.181245 GTCCAAACCAGTACGTACTAGTACA 59.819 44.000 26.95 10.84 46.85 2.90
1577 8664 5.392057 GGTCCAAACCAGTACGTACTAGTAC 60.392 48.000 26.95 21.06 45.68 2.73
1578 8665 4.700213 GGTCCAAACCAGTACGTACTAGTA 59.300 45.833 26.95 8.97 45.68 1.82
1579 8666 3.507622 GGTCCAAACCAGTACGTACTAGT 59.492 47.826 26.95 22.95 45.68 2.57
1580 8667 4.102035 GGTCCAAACCAGTACGTACTAG 57.898 50.000 26.95 22.27 45.68 2.57
1591 8678 3.876156 GCTAATAAGCTGGGTCCAAACCA 60.876 47.826 0.00 0.00 45.69 3.67
1592 8679 2.688446 GCTAATAAGCTGGGTCCAAACC 59.312 50.000 0.00 0.00 45.85 3.27
1632 8719 1.280746 CAACACTCCAACAGCAGCG 59.719 57.895 0.00 0.00 0.00 5.18
1657 8744 9.398170 CAATCCGTGCTTTATTATTATGGAAAG 57.602 33.333 0.00 0.00 30.86 2.62
1658 8745 9.126151 TCAATCCGTGCTTTATTATTATGGAAA 57.874 29.630 0.00 0.00 30.86 3.13
1659 8746 8.564574 GTCAATCCGTGCTTTATTATTATGGAA 58.435 33.333 0.00 0.00 30.86 3.53
1660 8747 7.936847 AGTCAATCCGTGCTTTATTATTATGGA 59.063 33.333 0.00 0.00 0.00 3.41
1661 8748 8.099364 AGTCAATCCGTGCTTTATTATTATGG 57.901 34.615 0.00 0.00 0.00 2.74
1662 8749 8.230486 GGAGTCAATCCGTGCTTTATTATTATG 58.770 37.037 0.00 0.00 38.67 1.90
1663 8750 8.324163 GGAGTCAATCCGTGCTTTATTATTAT 57.676 34.615 0.00 0.00 38.67 1.28
1664 8751 7.724305 GGAGTCAATCCGTGCTTTATTATTA 57.276 36.000 0.00 0.00 38.67 0.98
1665 8752 6.619801 GGAGTCAATCCGTGCTTTATTATT 57.380 37.500 0.00 0.00 38.67 1.40
1678 8765 3.797256 CGATGAACTTACGGAGTCAATCC 59.203 47.826 0.00 0.00 43.93 3.01
1679 8766 4.421948 ACGATGAACTTACGGAGTCAATC 58.578 43.478 0.00 0.00 43.93 2.67
1680 8767 4.082408 TGACGATGAACTTACGGAGTCAAT 60.082 41.667 0.00 0.00 43.93 2.57
1681 8768 3.253921 TGACGATGAACTTACGGAGTCAA 59.746 43.478 0.00 0.00 43.93 3.18
1682 8769 2.815503 TGACGATGAACTTACGGAGTCA 59.184 45.455 0.00 0.00 43.93 3.41
1683 8770 3.482722 TGACGATGAACTTACGGAGTC 57.517 47.619 0.00 0.00 43.93 3.36
1684 8771 7.990611 CGTATTATGACGATGAACTTACGGAGT 60.991 40.741 0.00 0.00 45.82 3.85
1685 8772 6.302549 CGTATTATGACGATGAACTTACGGAG 59.697 42.308 0.00 0.00 45.82 4.63
1686 8773 6.138088 CGTATTATGACGATGAACTTACGGA 58.862 40.000 0.00 0.00 45.82 4.69
1687 8774 5.164215 GCGTATTATGACGATGAACTTACGG 60.164 44.000 0.00 0.00 45.82 4.02
1688 8775 5.624081 AGCGTATTATGACGATGAACTTACG 59.376 40.000 0.00 0.00 45.82 3.18
1689 8776 6.988109 AGCGTATTATGACGATGAACTTAC 57.012 37.500 0.00 0.00 45.82 2.34
1690 8777 7.423199 AGAAGCGTATTATGACGATGAACTTA 58.577 34.615 0.00 0.00 45.82 2.24
1691 8778 6.273825 AGAAGCGTATTATGACGATGAACTT 58.726 36.000 0.00 0.00 45.82 2.66
1692 8779 5.833082 AGAAGCGTATTATGACGATGAACT 58.167 37.500 0.00 0.00 45.82 3.01
1693 8780 6.345882 GGAAGAAGCGTATTATGACGATGAAC 60.346 42.308 0.00 0.00 45.82 3.18
1694 8781 5.690409 GGAAGAAGCGTATTATGACGATGAA 59.310 40.000 0.00 0.00 45.82 2.57
1695 8782 5.220381 GGAAGAAGCGTATTATGACGATGA 58.780 41.667 0.00 0.00 45.82 2.92
1696 8783 4.386049 GGGAAGAAGCGTATTATGACGATG 59.614 45.833 0.00 0.00 45.82 3.84
1697 8784 4.557205 GGGAAGAAGCGTATTATGACGAT 58.443 43.478 0.00 0.00 45.82 3.73
1698 8785 3.549423 CGGGAAGAAGCGTATTATGACGA 60.549 47.826 0.00 0.00 45.82 4.20
1699 8786 2.724690 CGGGAAGAAGCGTATTATGACG 59.275 50.000 0.00 0.00 45.70 4.35
1700 8787 3.489785 CACGGGAAGAAGCGTATTATGAC 59.510 47.826 0.00 0.00 0.00 3.06
1701 8788 3.382227 TCACGGGAAGAAGCGTATTATGA 59.618 43.478 0.00 0.00 0.00 2.15
1702 8789 3.713288 TCACGGGAAGAAGCGTATTATG 58.287 45.455 0.00 0.00 0.00 1.90
1703 8790 4.395959 TTCACGGGAAGAAGCGTATTAT 57.604 40.909 0.00 0.00 0.00 1.28
1704 8791 3.872511 TTCACGGGAAGAAGCGTATTA 57.127 42.857 0.00 0.00 0.00 0.98
1705 8792 2.754946 TTCACGGGAAGAAGCGTATT 57.245 45.000 0.00 0.00 0.00 1.89
1706 8793 2.981859 ATTCACGGGAAGAAGCGTAT 57.018 45.000 6.16 0.00 36.25 3.06
1707 8794 2.754946 AATTCACGGGAAGAAGCGTA 57.245 45.000 6.16 0.00 36.25 4.42
1708 8795 1.892209 AAATTCACGGGAAGAAGCGT 58.108 45.000 6.16 0.00 36.25 5.07
1709 8796 2.222729 CGTAAATTCACGGGAAGAAGCG 60.223 50.000 6.16 4.58 38.26 4.68
1710 8797 2.740447 ACGTAAATTCACGGGAAGAAGC 59.260 45.455 6.16 0.00 46.12 3.86
1711 8798 5.352643 AAACGTAAATTCACGGGAAGAAG 57.647 39.130 6.16 0.00 46.12 2.85
1712 8799 5.296283 TGAAAACGTAAATTCACGGGAAGAA 59.704 36.000 6.16 0.00 46.12 2.52
1713 8800 4.815308 TGAAAACGTAAATTCACGGGAAGA 59.185 37.500 6.16 0.00 46.12 2.87
1714 8801 5.098218 TGAAAACGTAAATTCACGGGAAG 57.902 39.130 6.16 0.00 46.12 3.46
1715 8802 4.575645 ACTGAAAACGTAAATTCACGGGAA 59.424 37.500 0.72 0.72 46.12 3.97
1716 8803 4.128643 ACTGAAAACGTAAATTCACGGGA 58.871 39.130 6.03 0.00 46.12 5.14
1717 8804 4.477302 ACTGAAAACGTAAATTCACGGG 57.523 40.909 6.03 0.00 46.12 5.28
1718 8805 6.799786 AAAACTGAAAACGTAAATTCACGG 57.200 33.333 6.03 3.11 46.12 4.94
1753 8840 9.854668 TCCCGGATGTAGAAAATATCAAAATAA 57.145 29.630 0.73 0.00 0.00 1.40
1755 8842 8.796475 CATCCCGGATGTAGAAAATATCAAAAT 58.204 33.333 18.13 0.00 35.54 1.82
1756 8843 7.230510 CCATCCCGGATGTAGAAAATATCAAAA 59.769 37.037 23.27 0.00 38.28 2.44
1757 8844 6.714810 CCATCCCGGATGTAGAAAATATCAAA 59.285 38.462 23.27 0.00 38.28 2.69
1758 8845 6.183361 ACCATCCCGGATGTAGAAAATATCAA 60.183 38.462 23.27 0.00 38.28 2.57
1759 8846 5.309543 ACCATCCCGGATGTAGAAAATATCA 59.690 40.000 23.27 0.00 38.28 2.15
1760 8847 5.805728 ACCATCCCGGATGTAGAAAATATC 58.194 41.667 23.27 0.00 38.28 1.63
1761 8848 5.843019 ACCATCCCGGATGTAGAAAATAT 57.157 39.130 23.27 0.00 38.28 1.28
1762 8849 6.945636 ATACCATCCCGGATGTAGAAAATA 57.054 37.500 23.27 6.93 38.28 1.40
1763 8850 5.843019 ATACCATCCCGGATGTAGAAAAT 57.157 39.130 23.27 7.00 38.28 1.82
1764 8851 5.640158 AATACCATCCCGGATGTAGAAAA 57.360 39.130 23.27 5.20 38.28 2.29
1765 8852 6.945636 ATAATACCATCCCGGATGTAGAAA 57.054 37.500 23.27 8.61 38.28 2.52
1766 8853 6.945636 AATAATACCATCCCGGATGTAGAA 57.054 37.500 23.27 8.29 38.28 2.10
1767 8854 6.945636 AAATAATACCATCCCGGATGTAGA 57.054 37.500 23.27 10.34 38.28 2.59
1768 8855 7.551617 GGTAAAATAATACCATCCCGGATGTAG 59.448 40.741 23.27 13.05 44.01 2.74
1769 8856 7.396418 GGTAAAATAATACCATCCCGGATGTA 58.604 38.462 23.27 16.15 44.01 2.29
1770 8857 6.243148 GGTAAAATAATACCATCCCGGATGT 58.757 40.000 23.27 14.74 44.01 3.06
1771 8858 6.753107 GGTAAAATAATACCATCCCGGATG 57.247 41.667 19.26 19.26 44.01 3.51
1781 8868 8.685427 ACCAAATTACGGTGGTAAAATAATACC 58.315 33.333 0.00 0.00 46.47 2.73
1793 8880 1.081094 GACGGACCAAATTACGGTGG 58.919 55.000 4.25 0.00 36.69 4.61
1794 8881 1.081094 GGACGGACCAAATTACGGTG 58.919 55.000 4.25 0.00 36.69 4.94
1795 8882 0.686224 TGGACGGACCAAATTACGGT 59.314 50.000 0.00 0.00 46.75 4.83
1796 8883 3.536548 TGGACGGACCAAATTACGG 57.463 52.632 0.00 0.00 46.75 4.02
1809 8896 2.669777 AAAACTGGACGGGGTGGACG 62.670 60.000 0.00 0.00 37.36 4.79
1810 8897 0.887836 GAAAACTGGACGGGGTGGAC 60.888 60.000 0.00 0.00 0.00 4.02
1811 8898 1.346479 TGAAAACTGGACGGGGTGGA 61.346 55.000 0.00 0.00 0.00 4.02
1812 8899 0.889186 CTGAAAACTGGACGGGGTGG 60.889 60.000 0.00 0.00 0.00 4.61
1813 8900 0.107831 TCTGAAAACTGGACGGGGTG 59.892 55.000 0.00 0.00 0.00 4.61
1814 8901 0.841289 TTCTGAAAACTGGACGGGGT 59.159 50.000 0.00 0.00 0.00 4.95
1815 8902 1.975660 TTTCTGAAAACTGGACGGGG 58.024 50.000 0.00 0.00 0.00 5.73
1833 8920 9.213799 ACGTGCCAATTTGTCATTATTATTTTT 57.786 25.926 0.00 0.00 0.00 1.94
1834 8921 8.770438 ACGTGCCAATTTGTCATTATTATTTT 57.230 26.923 0.00 0.00 0.00 1.82
1835 8922 9.296400 GTACGTGCCAATTTGTCATTATTATTT 57.704 29.630 0.00 0.00 0.00 1.40
1836 8923 8.462811 TGTACGTGCCAATTTGTCATTATTATT 58.537 29.630 0.00 0.00 0.00 1.40
1837 8924 7.990917 TGTACGTGCCAATTTGTCATTATTAT 58.009 30.769 0.00 0.00 0.00 1.28
1838 8925 7.379098 TGTACGTGCCAATTTGTCATTATTA 57.621 32.000 0.00 0.00 0.00 0.98
1839 8926 6.260870 TGTACGTGCCAATTTGTCATTATT 57.739 33.333 0.00 0.00 0.00 1.40
1840 8927 5.163663 CCTGTACGTGCCAATTTGTCATTAT 60.164 40.000 0.00 0.00 0.00 1.28
1841 8928 4.155099 CCTGTACGTGCCAATTTGTCATTA 59.845 41.667 0.00 0.00 0.00 1.90
1842 8929 3.057596 CCTGTACGTGCCAATTTGTCATT 60.058 43.478 0.00 0.00 0.00 2.57
1843 8930 2.487762 CCTGTACGTGCCAATTTGTCAT 59.512 45.455 0.00 0.00 0.00 3.06
1844 8931 1.876799 CCTGTACGTGCCAATTTGTCA 59.123 47.619 0.00 0.00 0.00 3.58
1845 8932 2.147958 TCCTGTACGTGCCAATTTGTC 58.852 47.619 0.00 0.00 0.00 3.18
1846 8933 2.151202 CTCCTGTACGTGCCAATTTGT 58.849 47.619 0.00 0.00 0.00 2.83
1847 8934 2.151202 ACTCCTGTACGTGCCAATTTG 58.849 47.619 0.00 0.00 0.00 2.32
1848 8935 2.552315 CAACTCCTGTACGTGCCAATTT 59.448 45.455 0.00 0.00 0.00 1.82
1849 8936 2.151202 CAACTCCTGTACGTGCCAATT 58.849 47.619 0.00 0.00 0.00 2.32
1850 8937 1.346395 TCAACTCCTGTACGTGCCAAT 59.654 47.619 0.00 0.00 0.00 3.16
1851 8938 0.753867 TCAACTCCTGTACGTGCCAA 59.246 50.000 0.00 0.00 0.00 4.52
1852 8939 0.753867 TTCAACTCCTGTACGTGCCA 59.246 50.000 0.00 0.00 0.00 4.92
1853 8940 1.145803 GTTCAACTCCTGTACGTGCC 58.854 55.000 0.00 0.00 0.00 5.01
1854 8941 1.525619 GTGTTCAACTCCTGTACGTGC 59.474 52.381 0.00 0.00 0.00 5.34
1855 8942 2.538449 GTGTGTTCAACTCCTGTACGTG 59.462 50.000 0.00 0.00 0.00 4.49
1856 8943 2.166870 TGTGTGTTCAACTCCTGTACGT 59.833 45.455 0.00 0.00 0.00 3.57
1857 8944 2.816689 TGTGTGTTCAACTCCTGTACG 58.183 47.619 0.00 0.00 0.00 3.67
1858 8945 3.311596 GGTTGTGTGTTCAACTCCTGTAC 59.688 47.826 8.96 0.00 44.66 2.90
1859 8946 3.055021 TGGTTGTGTGTTCAACTCCTGTA 60.055 43.478 8.96 0.00 44.66 2.74
1860 8947 2.290641 TGGTTGTGTGTTCAACTCCTGT 60.291 45.455 8.96 0.00 44.66 4.00
1861 8948 2.364632 TGGTTGTGTGTTCAACTCCTG 58.635 47.619 8.96 0.00 44.66 3.86
1862 8949 2.752903 GTTGGTTGTGTGTTCAACTCCT 59.247 45.455 8.96 0.00 44.66 3.69
1863 8950 2.159296 GGTTGGTTGTGTGTTCAACTCC 60.159 50.000 8.96 6.45 44.66 3.85
1864 8951 2.159296 GGGTTGGTTGTGTGTTCAACTC 60.159 50.000 8.96 0.00 44.66 3.01
1865 8952 1.822371 GGGTTGGTTGTGTGTTCAACT 59.178 47.619 8.96 0.00 44.66 3.16
1866 8953 1.134936 GGGGTTGGTTGTGTGTTCAAC 60.135 52.381 0.00 0.00 44.57 3.18
1867 8954 1.187087 GGGGTTGGTTGTGTGTTCAA 58.813 50.000 0.00 0.00 0.00 2.69
1868 8955 0.333312 AGGGGTTGGTTGTGTGTTCA 59.667 50.000 0.00 0.00 0.00 3.18
1869 8956 1.407618 GAAGGGGTTGGTTGTGTGTTC 59.592 52.381 0.00 0.00 0.00 3.18
1870 8957 1.272760 TGAAGGGGTTGGTTGTGTGTT 60.273 47.619 0.00 0.00 0.00 3.32
1871 8958 0.333312 TGAAGGGGTTGGTTGTGTGT 59.667 50.000 0.00 0.00 0.00 3.72
1872 8959 1.032014 CTGAAGGGGTTGGTTGTGTG 58.968 55.000 0.00 0.00 0.00 3.82
1873 8960 0.106217 CCTGAAGGGGTTGGTTGTGT 60.106 55.000 0.00 0.00 0.00 3.72
1874 8961 2.732289 CCTGAAGGGGTTGGTTGTG 58.268 57.895 0.00 0.00 0.00 3.33
1885 8972 1.272092 TGGAGATTGCAACCCTGAAGG 60.272 52.381 0.00 0.00 43.78 3.46
1886 8973 2.089980 CTGGAGATTGCAACCCTGAAG 58.910 52.381 0.00 0.00 0.00 3.02
1887 8974 1.887956 GCTGGAGATTGCAACCCTGAA 60.888 52.381 18.79 4.50 0.00 3.02
1888 8975 0.322816 GCTGGAGATTGCAACCCTGA 60.323 55.000 18.79 3.46 0.00 3.86
1889 8976 1.318158 GGCTGGAGATTGCAACCCTG 61.318 60.000 0.00 8.90 0.00 4.45
1890 8977 1.000396 GGCTGGAGATTGCAACCCT 60.000 57.895 0.00 1.33 0.00 4.34
1891 8978 1.304381 TGGCTGGAGATTGCAACCC 60.304 57.895 0.00 4.21 0.00 4.11
1892 8979 1.885871 GTGGCTGGAGATTGCAACC 59.114 57.895 0.00 0.00 0.00 3.77
1893 8980 1.503542 CGTGGCTGGAGATTGCAAC 59.496 57.895 0.00 0.00 0.00 4.17
1894 8981 1.675310 CCGTGGCTGGAGATTGCAA 60.675 57.895 0.00 0.00 0.00 4.08
1895 8982 2.046023 CCGTGGCTGGAGATTGCA 60.046 61.111 0.00 0.00 0.00 4.08
1896 8983 2.825836 CCCGTGGCTGGAGATTGC 60.826 66.667 0.00 0.00 0.00 3.56
1897 8984 2.124570 CCCCGTGGCTGGAGATTG 60.125 66.667 0.00 0.00 0.00 2.67
1907 8994 2.520741 AGTTGTTTGGCCCCGTGG 60.521 61.111 0.00 0.00 0.00 4.94
1908 8995 2.727544 CAGTTGTTTGGCCCCGTG 59.272 61.111 0.00 0.00 0.00 4.94
1909 8996 2.520741 CCAGTTGTTTGGCCCCGT 60.521 61.111 0.00 0.00 0.00 5.28
1910 8997 2.520741 ACCAGTTGTTTGGCCCCG 60.521 61.111 0.00 0.00 42.18 5.73
1911 8998 1.760480 ACACCAGTTGTTTGGCCCC 60.760 57.895 0.00 0.00 42.18 5.80
1912 8999 1.326951 ACACACCAGTTGTTTGGCCC 61.327 55.000 0.00 0.00 42.18 5.80
1913 9000 0.102300 GACACACCAGTTGTTTGGCC 59.898 55.000 0.00 0.00 42.18 5.36
1914 9001 1.102978 AGACACACCAGTTGTTTGGC 58.897 50.000 0.00 0.00 42.18 4.52
1915 9002 5.514274 AATTAGACACACCAGTTGTTTGG 57.486 39.130 0.00 0.00 44.09 3.28
2369 9456 2.231215 ACGACAGATAGGCAAGATGC 57.769 50.000 0.00 0.00 44.08 3.91
2370 9457 2.868583 CCAACGACAGATAGGCAAGATG 59.131 50.000 0.00 0.00 0.00 2.90
2371 9458 2.766263 TCCAACGACAGATAGGCAAGAT 59.234 45.455 0.00 0.00 0.00 2.40
2372 9459 2.176045 TCCAACGACAGATAGGCAAGA 58.824 47.619 0.00 0.00 0.00 3.02
2373 9460 2.672961 TCCAACGACAGATAGGCAAG 57.327 50.000 0.00 0.00 0.00 4.01
2374 9461 2.481276 CGATCCAACGACAGATAGGCAA 60.481 50.000 0.00 0.00 35.09 4.52
2375 9462 1.067060 CGATCCAACGACAGATAGGCA 59.933 52.381 0.00 0.00 35.09 4.75
2376 9463 1.067212 ACGATCCAACGACAGATAGGC 59.933 52.381 0.00 0.00 37.03 3.93
2377 9464 2.099263 ACACGATCCAACGACAGATAGG 59.901 50.000 0.00 0.00 37.03 2.57
2378 9465 3.422417 ACACGATCCAACGACAGATAG 57.578 47.619 0.00 0.00 37.03 2.08
2379 9466 3.861276 AACACGATCCAACGACAGATA 57.139 42.857 0.00 0.00 37.03 1.98
2380 9467 2.743636 AACACGATCCAACGACAGAT 57.256 45.000 0.00 0.00 37.03 2.90
2381 9468 2.519377 AAACACGATCCAACGACAGA 57.481 45.000 0.00 0.00 37.03 3.41
2382 9469 2.092211 GCTAAACACGATCCAACGACAG 59.908 50.000 0.00 0.00 37.03 3.51
2383 9470 2.063266 GCTAAACACGATCCAACGACA 58.937 47.619 0.00 0.00 37.03 4.35
2384 9471 1.058695 CGCTAAACACGATCCAACGAC 59.941 52.381 0.00 0.00 37.03 4.34
2385 9472 1.068402 TCGCTAAACACGATCCAACGA 60.068 47.619 0.00 0.00 33.96 3.85
2386 9473 1.342555 TCGCTAAACACGATCCAACG 58.657 50.000 0.00 0.00 33.96 4.10
2393 9480 6.954616 TTCTAAATCAATCGCTAAACACGA 57.045 33.333 0.00 0.00 44.75 4.35
2394 9481 7.234384 AGTTTCTAAATCAATCGCTAAACACG 58.766 34.615 0.00 0.00 0.00 4.49
2395 9482 9.690434 CTAGTTTCTAAATCAATCGCTAAACAC 57.310 33.333 0.00 0.00 0.00 3.32
2396 9483 9.431887 ACTAGTTTCTAAATCAATCGCTAAACA 57.568 29.630 0.00 0.00 0.00 2.83
2397 9484 9.690434 CACTAGTTTCTAAATCAATCGCTAAAC 57.310 33.333 0.00 0.00 0.00 2.01
2398 9485 9.647797 TCACTAGTTTCTAAATCAATCGCTAAA 57.352 29.630 0.00 0.00 0.00 1.85
2399 9486 9.647797 TTCACTAGTTTCTAAATCAATCGCTAA 57.352 29.630 0.00 0.00 0.00 3.09
2400 9487 9.647797 TTTCACTAGTTTCTAAATCAATCGCTA 57.352 29.630 0.00 0.00 0.00 4.26
2401 9488 8.547967 TTTCACTAGTTTCTAAATCAATCGCT 57.452 30.769 0.00 0.00 0.00 4.93
2402 9489 9.774742 ATTTTCACTAGTTTCTAAATCAATCGC 57.225 29.630 0.00 0.00 0.00 4.58
2405 9492 9.860898 GCCATTTTCACTAGTTTCTAAATCAAT 57.139 29.630 0.00 0.00 0.00 2.57
2406 9493 9.077885 AGCCATTTTCACTAGTTTCTAAATCAA 57.922 29.630 0.00 0.00 0.00 2.57
2407 9494 8.635765 AGCCATTTTCACTAGTTTCTAAATCA 57.364 30.769 0.00 0.00 0.00 2.57
2413 9500 9.696917 CAAATTAAGCCATTTTCACTAGTTTCT 57.303 29.630 0.00 0.00 0.00 2.52
2414 9501 8.925700 CCAAATTAAGCCATTTTCACTAGTTTC 58.074 33.333 0.00 0.00 0.00 2.78
2415 9502 7.387673 GCCAAATTAAGCCATTTTCACTAGTTT 59.612 33.333 0.00 0.00 0.00 2.66
2416 9503 6.873605 GCCAAATTAAGCCATTTTCACTAGTT 59.126 34.615 0.00 0.00 0.00 2.24
2417 9504 6.014669 TGCCAAATTAAGCCATTTTCACTAGT 60.015 34.615 0.00 0.00 0.00 2.57
2418 9505 6.397272 TGCCAAATTAAGCCATTTTCACTAG 58.603 36.000 0.00 0.00 0.00 2.57
2419 9506 6.352016 TGCCAAATTAAGCCATTTTCACTA 57.648 33.333 0.00 0.00 0.00 2.74
2420 9507 5.226194 TGCCAAATTAAGCCATTTTCACT 57.774 34.783 0.00 0.00 0.00 3.41
2421 9508 4.392754 CCTGCCAAATTAAGCCATTTTCAC 59.607 41.667 0.00 0.00 0.00 3.18
2422 9509 4.577875 CCTGCCAAATTAAGCCATTTTCA 58.422 39.130 0.00 0.00 0.00 2.69
2423 9510 3.374988 GCCTGCCAAATTAAGCCATTTTC 59.625 43.478 0.00 0.00 0.00 2.29
2424 9511 3.009363 AGCCTGCCAAATTAAGCCATTTT 59.991 39.130 0.00 0.00 0.00 1.82
2425 9512 2.573009 AGCCTGCCAAATTAAGCCATTT 59.427 40.909 0.00 0.00 0.00 2.32
2426 9513 2.190538 AGCCTGCCAAATTAAGCCATT 58.809 42.857 0.00 0.00 0.00 3.16
2427 9514 1.870064 AGCCTGCCAAATTAAGCCAT 58.130 45.000 0.00 0.00 0.00 4.40
2428 9515 1.643310 AAGCCTGCCAAATTAAGCCA 58.357 45.000 0.00 0.00 0.00 4.75
2429 9516 2.768253 AAAGCCTGCCAAATTAAGCC 57.232 45.000 0.00 0.00 0.00 4.35
2430 9517 6.108687 AGAATTAAAGCCTGCCAAATTAAGC 58.891 36.000 0.00 0.00 0.00 3.09
2431 9518 8.552083 AAAGAATTAAAGCCTGCCAAATTAAG 57.448 30.769 0.00 0.00 0.00 1.85
2434 9521 9.166173 GATTAAAGAATTAAAGCCTGCCAAATT 57.834 29.630 0.00 0.00 34.80 1.82
2435 9522 8.320617 TGATTAAAGAATTAAAGCCTGCCAAAT 58.679 29.630 0.00 0.00 34.80 2.32
2436 9523 7.675062 TGATTAAAGAATTAAAGCCTGCCAAA 58.325 30.769 0.00 0.00 34.80 3.28
2437 9524 7.238486 TGATTAAAGAATTAAAGCCTGCCAA 57.762 32.000 0.00 0.00 34.80 4.52
2438 9525 6.849085 TGATTAAAGAATTAAAGCCTGCCA 57.151 33.333 0.00 0.00 34.80 4.92
2439 9526 7.439356 GGAATGATTAAAGAATTAAAGCCTGCC 59.561 37.037 0.00 0.00 34.80 4.85
2440 9527 7.981225 TGGAATGATTAAAGAATTAAAGCCTGC 59.019 33.333 0.00 0.00 34.80 4.85
2466 9553 1.385528 ATGACGTGACATGCATGCAT 58.614 45.000 27.46 27.46 36.99 3.96
2467 9554 1.935199 CTATGACGTGACATGCATGCA 59.065 47.619 26.53 25.04 36.99 3.96
2468 9555 2.204237 TCTATGACGTGACATGCATGC 58.796 47.619 26.53 18.59 36.99 4.06
2469 9556 4.863152 TTTCTATGACGTGACATGCATG 57.137 40.909 25.09 25.09 39.48 4.06
2470 9557 4.333649 CCTTTTCTATGACGTGACATGCAT 59.666 41.667 0.00 0.00 0.00 3.96
2471 9558 3.684305 CCTTTTCTATGACGTGACATGCA 59.316 43.478 0.00 0.00 0.00 3.96
2472 9559 3.932710 TCCTTTTCTATGACGTGACATGC 59.067 43.478 0.00 0.00 0.00 4.06
2473 9560 5.063944 CCTTCCTTTTCTATGACGTGACATG 59.936 44.000 0.00 0.00 0.00 3.21
2474 9561 5.046591 TCCTTCCTTTTCTATGACGTGACAT 60.047 40.000 0.00 0.00 0.00 3.06
2475 9562 4.282449 TCCTTCCTTTTCTATGACGTGACA 59.718 41.667 0.00 0.00 0.00 3.58
2476 9563 4.817517 TCCTTCCTTTTCTATGACGTGAC 58.182 43.478 0.00 0.00 0.00 3.67
2477 9564 5.477607 TTCCTTCCTTTTCTATGACGTGA 57.522 39.130 0.00 0.00 0.00 4.35
2478 9565 6.743575 ATTTCCTTCCTTTTCTATGACGTG 57.256 37.500 0.00 0.00 0.00 4.49
2479 9566 8.857694 TTAATTTCCTTCCTTTTCTATGACGT 57.142 30.769 0.00 0.00 0.00 4.34
2547 9634 9.991906 TTTAGCCTACGAATAAATAAGTGCTAT 57.008 29.630 0.00 0.00 0.00 2.97
2548 9635 9.991906 ATTTAGCCTACGAATAAATAAGTGCTA 57.008 29.630 0.00 0.00 29.58 3.49
2549 9636 8.904099 ATTTAGCCTACGAATAAATAAGTGCT 57.096 30.769 0.00 0.00 29.58 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.