Multiple sequence alignment - TraesCS5D01G493300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G493300 chr5D 100.000 1807 0 0 590 2396 526110074 526108268 0.000000e+00 3338.0
1 TraesCS5D01G493300 chr5D 100.000 231 0 0 1 231 526110663 526110433 6.120000e-116 427.0
2 TraesCS5D01G493300 chr5D 100.000 31 0 0 196 226 249099485 249099515 9.250000e-05 58.4
3 TraesCS5D01G493300 chr5B 93.692 1617 75 9 777 2384 661131025 661129427 0.000000e+00 2396.0
4 TraesCS5D01G493300 chr5B 93.182 44 1 2 186 228 455811565 455811607 1.990000e-06 63.9
5 TraesCS5D01G493300 chr5A 92.903 1550 68 10 840 2384 653134026 653132514 0.000000e+00 2215.0
6 TraesCS5D01G493300 chr5A 87.151 179 22 1 1902 2079 450882384 450882562 4.040000e-48 202.0
7 TraesCS5D01G493300 chr5A 85.955 178 24 1 1902 2079 112144038 112143862 3.140000e-44 189.0
8 TraesCS5D01G493300 chr6D 81.435 237 40 3 1872 2104 448416224 448416460 8.740000e-45 191.0
9 TraesCS5D01G493300 chr1A 85.083 181 22 4 1902 2079 354204304 354204482 1.890000e-41 180.0
10 TraesCS5D01G493300 chr4B 84.444 180 21 4 1902 2079 447451828 447452002 1.140000e-38 171.0
11 TraesCS5D01G493300 chr1D 85.276 163 21 2 1902 2063 282188365 282188525 5.300000e-37 165.0
12 TraesCS5D01G493300 chr3D 83.146 178 26 3 1902 2079 553868104 553867931 2.470000e-35 159.0
13 TraesCS5D01G493300 chr6A 94.000 50 1 2 590 638 175657834 175657882 9.190000e-10 75.0
14 TraesCS5D01G493300 chr7D 97.143 35 1 0 730 764 587086486 587086520 2.570000e-05 60.2
15 TraesCS5D01G493300 chr4A 94.286 35 2 0 598 632 711839804 711839838 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G493300 chr5D 526108268 526110663 2395 True 1882.5 3338 100.000 1 2396 2 chr5D.!!$R1 2395
1 TraesCS5D01G493300 chr5B 661129427 661131025 1598 True 2396.0 2396 93.692 777 2384 1 chr5B.!!$R1 1607
2 TraesCS5D01G493300 chr5A 653132514 653134026 1512 True 2215.0 2215 92.903 840 2384 1 chr5A.!!$R2 1544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 636 0.036164 TGATGTAGCAAAGCCGGTGT 59.964 50.0 1.9 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1537 1554 0.098728 CCACAACGGCGAATGGAATC 59.901 55.0 16.62 0.0 33.8 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.154827 TGGAACACCTTGGAATTCCTC 57.845 47.619 24.73 11.94 41.11 3.71
32 33 2.716424 TGGAACACCTTGGAATTCCTCT 59.284 45.455 24.73 2.29 41.11 3.69
33 34 3.084786 GGAACACCTTGGAATTCCTCTG 58.915 50.000 24.73 15.51 38.08 3.35
34 35 2.206576 ACACCTTGGAATTCCTCTGC 57.793 50.000 24.73 0.00 36.82 4.26
35 36 1.707427 ACACCTTGGAATTCCTCTGCT 59.293 47.619 24.73 1.58 36.82 4.24
36 37 2.108952 ACACCTTGGAATTCCTCTGCTT 59.891 45.455 24.73 3.44 36.82 3.91
37 38 3.160269 CACCTTGGAATTCCTCTGCTTT 58.840 45.455 24.73 0.84 36.82 3.51
38 39 3.192212 CACCTTGGAATTCCTCTGCTTTC 59.808 47.826 24.73 0.00 36.82 2.62
39 40 3.181429 ACCTTGGAATTCCTCTGCTTTCA 60.181 43.478 24.73 0.00 36.82 2.69
40 41 3.192212 CCTTGGAATTCCTCTGCTTTCAC 59.808 47.826 24.73 0.00 36.82 3.18
41 42 3.507162 TGGAATTCCTCTGCTTTCACA 57.493 42.857 24.73 0.00 36.82 3.58
42 43 3.415212 TGGAATTCCTCTGCTTTCACAG 58.585 45.455 24.73 0.00 39.12 3.66
43 44 3.181440 TGGAATTCCTCTGCTTTCACAGT 60.181 43.478 24.73 0.00 38.84 3.55
44 45 3.190118 GGAATTCCTCTGCTTTCACAGTG 59.810 47.826 17.73 0.00 38.84 3.66
45 46 1.597742 TTCCTCTGCTTTCACAGTGC 58.402 50.000 0.00 0.00 38.84 4.40
46 47 0.250467 TCCTCTGCTTTCACAGTGCC 60.250 55.000 0.00 0.00 38.84 5.01
47 48 1.239968 CCTCTGCTTTCACAGTGCCC 61.240 60.000 0.00 0.00 38.84 5.36
48 49 0.535780 CTCTGCTTTCACAGTGCCCA 60.536 55.000 0.00 0.00 38.84 5.36
49 50 0.106769 TCTGCTTTCACAGTGCCCAA 60.107 50.000 0.00 0.00 38.84 4.12
50 51 0.313043 CTGCTTTCACAGTGCCCAAG 59.687 55.000 0.00 0.00 32.78 3.61
51 52 1.006922 GCTTTCACAGTGCCCAAGC 60.007 57.895 13.25 13.25 40.48 4.01
52 53 1.662044 CTTTCACAGTGCCCAAGCC 59.338 57.895 0.00 0.00 38.69 4.35
53 54 2.133742 CTTTCACAGTGCCCAAGCCG 62.134 60.000 0.00 0.00 38.69 5.52
62 63 4.161295 CCCAAGCCGCCTCGATCA 62.161 66.667 0.00 0.00 0.00 2.92
63 64 2.892425 CCAAGCCGCCTCGATCAC 60.892 66.667 0.00 0.00 0.00 3.06
64 65 2.125552 CAAGCCGCCTCGATCACA 60.126 61.111 0.00 0.00 0.00 3.58
65 66 1.741401 CAAGCCGCCTCGATCACAA 60.741 57.895 0.00 0.00 0.00 3.33
66 67 1.003839 AAGCCGCCTCGATCACAAA 60.004 52.632 0.00 0.00 0.00 2.83
67 68 0.605319 AAGCCGCCTCGATCACAAAA 60.605 50.000 0.00 0.00 0.00 2.44
68 69 1.021390 AGCCGCCTCGATCACAAAAG 61.021 55.000 0.00 0.00 0.00 2.27
69 70 1.019278 GCCGCCTCGATCACAAAAGA 61.019 55.000 0.00 0.00 0.00 2.52
70 71 1.002366 CCGCCTCGATCACAAAAGAG 58.998 55.000 0.00 0.00 0.00 2.85
71 72 1.673033 CCGCCTCGATCACAAAAGAGT 60.673 52.381 0.00 0.00 0.00 3.24
72 73 1.656095 CGCCTCGATCACAAAAGAGTC 59.344 52.381 0.00 0.00 0.00 3.36
73 74 1.656095 GCCTCGATCACAAAAGAGTCG 59.344 52.381 0.00 0.00 0.00 4.18
74 75 2.671351 GCCTCGATCACAAAAGAGTCGA 60.671 50.000 0.00 0.00 38.79 4.20
75 76 3.575630 CCTCGATCACAAAAGAGTCGAA 58.424 45.455 0.00 0.00 40.31 3.71
76 77 3.365220 CCTCGATCACAAAAGAGTCGAAC 59.635 47.826 0.00 0.00 40.31 3.95
77 78 3.314553 TCGATCACAAAAGAGTCGAACC 58.685 45.455 0.00 0.00 38.25 3.62
78 79 2.412089 CGATCACAAAAGAGTCGAACCC 59.588 50.000 0.00 0.00 34.46 4.11
79 80 3.665190 GATCACAAAAGAGTCGAACCCT 58.335 45.455 0.00 0.00 0.00 4.34
80 81 4.617530 CGATCACAAAAGAGTCGAACCCTA 60.618 45.833 0.00 0.00 34.46 3.53
81 82 4.252971 TCACAAAAGAGTCGAACCCTAG 57.747 45.455 0.00 0.00 0.00 3.02
82 83 2.737252 CACAAAAGAGTCGAACCCTAGC 59.263 50.000 0.00 0.00 0.00 3.42
83 84 2.633481 ACAAAAGAGTCGAACCCTAGCT 59.367 45.455 0.00 0.00 0.00 3.32
84 85 3.071167 ACAAAAGAGTCGAACCCTAGCTT 59.929 43.478 0.00 0.00 0.00 3.74
85 86 4.282703 ACAAAAGAGTCGAACCCTAGCTTA 59.717 41.667 0.00 0.00 0.00 3.09
86 87 5.046520 ACAAAAGAGTCGAACCCTAGCTTAT 60.047 40.000 0.00 0.00 0.00 1.73
87 88 4.922471 AAGAGTCGAACCCTAGCTTATC 57.078 45.455 0.00 0.00 0.00 1.75
88 89 3.224269 AGAGTCGAACCCTAGCTTATCC 58.776 50.000 0.00 0.00 0.00 2.59
89 90 3.117436 AGAGTCGAACCCTAGCTTATCCT 60.117 47.826 0.00 0.00 0.00 3.24
90 91 3.637694 GAGTCGAACCCTAGCTTATCCTT 59.362 47.826 0.00 0.00 0.00 3.36
91 92 3.385111 AGTCGAACCCTAGCTTATCCTTG 59.615 47.826 0.00 0.00 0.00 3.61
92 93 2.102588 TCGAACCCTAGCTTATCCTTGC 59.897 50.000 0.00 0.00 0.00 4.01
93 94 2.807108 CGAACCCTAGCTTATCCTTGCC 60.807 54.545 0.00 0.00 0.00 4.52
94 95 1.141185 ACCCTAGCTTATCCTTGCCC 58.859 55.000 0.00 0.00 0.00 5.36
95 96 1.345526 ACCCTAGCTTATCCTTGCCCT 60.346 52.381 0.00 0.00 0.00 5.19
96 97 1.777272 CCCTAGCTTATCCTTGCCCTT 59.223 52.381 0.00 0.00 0.00 3.95
97 98 2.487986 CCCTAGCTTATCCTTGCCCTTG 60.488 54.545 0.00 0.00 0.00 3.61
98 99 2.439507 CCTAGCTTATCCTTGCCCTTGA 59.560 50.000 0.00 0.00 0.00 3.02
99 100 3.117888 CCTAGCTTATCCTTGCCCTTGAA 60.118 47.826 0.00 0.00 0.00 2.69
100 101 3.010200 AGCTTATCCTTGCCCTTGAAG 57.990 47.619 0.00 0.00 0.00 3.02
101 102 1.406898 GCTTATCCTTGCCCTTGAAGC 59.593 52.381 0.00 0.00 0.00 3.86
102 103 2.027385 CTTATCCTTGCCCTTGAAGCC 58.973 52.381 0.00 0.00 0.00 4.35
103 104 1.298953 TATCCTTGCCCTTGAAGCCT 58.701 50.000 0.00 0.00 0.00 4.58
104 105 0.324091 ATCCTTGCCCTTGAAGCCTG 60.324 55.000 0.00 0.00 0.00 4.85
105 106 1.228675 CCTTGCCCTTGAAGCCTGT 60.229 57.895 0.00 0.00 0.00 4.00
106 107 1.246737 CCTTGCCCTTGAAGCCTGTC 61.247 60.000 0.00 0.00 0.00 3.51
107 108 1.228552 TTGCCCTTGAAGCCTGTCC 60.229 57.895 0.00 0.00 0.00 4.02
108 109 1.719063 TTGCCCTTGAAGCCTGTCCT 61.719 55.000 0.00 0.00 0.00 3.85
109 110 0.840288 TGCCCTTGAAGCCTGTCCTA 60.840 55.000 0.00 0.00 0.00 2.94
110 111 0.107459 GCCCTTGAAGCCTGTCCTAG 60.107 60.000 0.00 0.00 0.00 3.02
111 112 0.107459 CCCTTGAAGCCTGTCCTAGC 60.107 60.000 0.00 0.00 0.00 3.42
112 113 0.908198 CCTTGAAGCCTGTCCTAGCT 59.092 55.000 0.00 0.00 42.40 3.32
113 114 1.134551 CCTTGAAGCCTGTCCTAGCTC 60.135 57.143 0.00 0.00 38.74 4.09
114 115 1.830477 CTTGAAGCCTGTCCTAGCTCT 59.170 52.381 0.00 0.00 38.74 4.09
115 116 1.479709 TGAAGCCTGTCCTAGCTCTC 58.520 55.000 0.00 0.00 38.74 3.20
116 117 1.272704 TGAAGCCTGTCCTAGCTCTCA 60.273 52.381 0.00 0.00 38.74 3.27
117 118 1.408702 GAAGCCTGTCCTAGCTCTCAG 59.591 57.143 0.00 0.00 38.74 3.35
118 119 1.042559 AGCCTGTCCTAGCTCTCAGC 61.043 60.000 0.00 0.00 42.84 4.26
119 120 2.026945 GCCTGTCCTAGCTCTCAGCC 62.027 65.000 0.00 0.00 43.77 4.85
120 121 0.685785 CCTGTCCTAGCTCTCAGCCA 60.686 60.000 0.00 0.00 43.77 4.75
121 122 0.459489 CTGTCCTAGCTCTCAGCCAC 59.541 60.000 0.00 0.00 43.77 5.01
122 123 0.972983 TGTCCTAGCTCTCAGCCACC 60.973 60.000 0.00 0.00 43.77 4.61
123 124 0.972983 GTCCTAGCTCTCAGCCACCA 60.973 60.000 0.00 0.00 43.77 4.17
124 125 0.252239 TCCTAGCTCTCAGCCACCAA 60.252 55.000 0.00 0.00 43.77 3.67
125 126 0.107945 CCTAGCTCTCAGCCACCAAC 60.108 60.000 0.00 0.00 43.77 3.77
126 127 0.107945 CTAGCTCTCAGCCACCAACC 60.108 60.000 0.00 0.00 43.77 3.77
127 128 0.835971 TAGCTCTCAGCCACCAACCA 60.836 55.000 0.00 0.00 43.77 3.67
128 129 1.673665 GCTCTCAGCCACCAACCAG 60.674 63.158 0.00 0.00 34.48 4.00
129 130 1.757306 CTCTCAGCCACCAACCAGT 59.243 57.895 0.00 0.00 0.00 4.00
130 131 0.604780 CTCTCAGCCACCAACCAGTG 60.605 60.000 0.00 0.00 37.51 3.66
131 132 1.053835 TCTCAGCCACCAACCAGTGA 61.054 55.000 0.00 0.00 40.34 3.41
132 133 0.179020 CTCAGCCACCAACCAGTGAA 60.179 55.000 0.00 0.00 40.34 3.18
133 134 0.478072 TCAGCCACCAACCAGTGAAT 59.522 50.000 0.00 0.00 40.34 2.57
134 135 1.133513 TCAGCCACCAACCAGTGAATT 60.134 47.619 0.00 0.00 40.34 2.17
135 136 1.688197 CAGCCACCAACCAGTGAATTT 59.312 47.619 0.00 0.00 40.34 1.82
136 137 1.688197 AGCCACCAACCAGTGAATTTG 59.312 47.619 0.00 0.00 40.34 2.32
137 138 1.412343 GCCACCAACCAGTGAATTTGT 59.588 47.619 0.00 0.00 40.34 2.83
138 139 2.545742 GCCACCAACCAGTGAATTTGTC 60.546 50.000 0.00 0.00 40.34 3.18
139 140 2.958355 CCACCAACCAGTGAATTTGTCT 59.042 45.455 0.00 0.00 40.34 3.41
140 141 3.243501 CCACCAACCAGTGAATTTGTCTG 60.244 47.826 0.00 0.00 40.34 3.51
141 142 3.381272 CACCAACCAGTGAATTTGTCTGT 59.619 43.478 0.00 0.00 40.34 3.41
142 143 3.632145 ACCAACCAGTGAATTTGTCTGTC 59.368 43.478 0.00 0.00 0.00 3.51
143 144 3.631686 CCAACCAGTGAATTTGTCTGTCA 59.368 43.478 0.00 0.00 0.00 3.58
144 145 4.498009 CCAACCAGTGAATTTGTCTGTCAC 60.498 45.833 0.00 0.00 41.62 3.67
150 151 5.499139 GTGAATTTGTCTGTCACTTCCAA 57.501 39.130 0.00 0.00 38.87 3.53
151 152 5.514279 GTGAATTTGTCTGTCACTTCCAAG 58.486 41.667 0.00 0.00 38.87 3.61
152 153 5.296780 GTGAATTTGTCTGTCACTTCCAAGA 59.703 40.000 0.00 0.00 38.87 3.02
153 154 6.016777 GTGAATTTGTCTGTCACTTCCAAGAT 60.017 38.462 0.00 0.00 38.87 2.40
154 155 7.173218 GTGAATTTGTCTGTCACTTCCAAGATA 59.827 37.037 0.00 0.00 38.87 1.98
155 156 7.884877 TGAATTTGTCTGTCACTTCCAAGATAT 59.115 33.333 0.00 0.00 0.00 1.63
156 157 8.641498 AATTTGTCTGTCACTTCCAAGATATT 57.359 30.769 0.00 0.00 0.00 1.28
157 158 7.439157 TTTGTCTGTCACTTCCAAGATATTG 57.561 36.000 0.00 0.00 0.00 1.90
158 159 6.358974 TGTCTGTCACTTCCAAGATATTGA 57.641 37.500 0.54 0.00 0.00 2.57
159 160 6.950842 TGTCTGTCACTTCCAAGATATTGAT 58.049 36.000 0.54 0.00 0.00 2.57
160 161 6.820152 TGTCTGTCACTTCCAAGATATTGATG 59.180 38.462 0.54 0.00 0.00 3.07
161 162 6.820656 GTCTGTCACTTCCAAGATATTGATGT 59.179 38.462 0.54 0.00 0.00 3.06
162 163 7.335422 GTCTGTCACTTCCAAGATATTGATGTT 59.665 37.037 0.54 0.00 0.00 2.71
163 164 8.539544 TCTGTCACTTCCAAGATATTGATGTTA 58.460 33.333 0.54 0.00 0.00 2.41
164 165 9.166173 CTGTCACTTCCAAGATATTGATGTTAA 57.834 33.333 0.54 0.00 0.00 2.01
165 166 9.685276 TGTCACTTCCAAGATATTGATGTTAAT 57.315 29.630 0.54 0.00 0.00 1.40
169 170 8.844244 ACTTCCAAGATATTGATGTTAATCTGC 58.156 33.333 0.54 0.00 33.61 4.26
170 171 8.750515 TTCCAAGATATTGATGTTAATCTGCA 57.249 30.769 0.54 0.00 33.61 4.41
171 172 8.387190 TCCAAGATATTGATGTTAATCTGCAG 57.613 34.615 7.63 7.63 33.61 4.41
172 173 7.994911 TCCAAGATATTGATGTTAATCTGCAGT 59.005 33.333 14.67 0.00 33.61 4.40
173 174 9.276590 CCAAGATATTGATGTTAATCTGCAGTA 57.723 33.333 14.67 0.48 33.61 2.74
175 176 9.499479 AAGATATTGATGTTAATCTGCAGTAGG 57.501 33.333 14.67 0.00 33.61 3.18
176 177 8.654997 AGATATTGATGTTAATCTGCAGTAGGT 58.345 33.333 14.67 0.03 33.61 3.08
177 178 9.277783 GATATTGATGTTAATCTGCAGTAGGTT 57.722 33.333 14.67 7.52 33.61 3.50
180 181 8.856153 TTGATGTTAATCTGCAGTAGGTTAAA 57.144 30.769 14.67 7.10 42.14 1.52
181 182 9.461312 TTGATGTTAATCTGCAGTAGGTTAAAT 57.539 29.630 14.67 10.49 42.14 1.40
182 183 9.109393 TGATGTTAATCTGCAGTAGGTTAAATC 57.891 33.333 14.67 16.39 42.14 2.17
183 184 9.331282 GATGTTAATCTGCAGTAGGTTAAATCT 57.669 33.333 14.67 4.36 42.14 2.40
184 185 8.718102 TGTTAATCTGCAGTAGGTTAAATCTC 57.282 34.615 14.67 4.89 42.14 2.75
185 186 7.491372 TGTTAATCTGCAGTAGGTTAAATCTCG 59.509 37.037 14.67 0.00 42.14 4.04
186 187 5.599999 ATCTGCAGTAGGTTAAATCTCGT 57.400 39.130 14.67 0.00 0.00 4.18
187 188 4.744570 TCTGCAGTAGGTTAAATCTCGTG 58.255 43.478 14.67 0.00 0.00 4.35
188 189 4.219944 TCTGCAGTAGGTTAAATCTCGTGT 59.780 41.667 14.67 0.00 0.00 4.49
189 190 4.242475 TGCAGTAGGTTAAATCTCGTGTG 58.758 43.478 0.00 0.00 0.00 3.82
190 191 3.062234 GCAGTAGGTTAAATCTCGTGTGC 59.938 47.826 0.00 0.00 0.00 4.57
191 192 3.617263 CAGTAGGTTAAATCTCGTGTGCC 59.383 47.826 0.00 0.00 0.00 5.01
192 193 2.851263 AGGTTAAATCTCGTGTGCCA 57.149 45.000 0.00 0.00 0.00 4.92
193 194 2.423577 AGGTTAAATCTCGTGTGCCAC 58.576 47.619 0.00 0.00 0.00 5.01
194 195 2.147958 GGTTAAATCTCGTGTGCCACA 58.852 47.619 0.00 0.00 33.40 4.17
195 196 2.095919 GGTTAAATCTCGTGTGCCACAC 60.096 50.000 17.99 17.99 45.26 3.82
206 207 3.367992 TGTGCCACACAAAAATGCTAG 57.632 42.857 0.00 0.00 41.69 3.42
207 208 2.954989 TGTGCCACACAAAAATGCTAGA 59.045 40.909 0.00 0.00 41.69 2.43
208 209 3.573538 TGTGCCACACAAAAATGCTAGAT 59.426 39.130 0.00 0.00 41.69 1.98
209 210 4.764308 TGTGCCACACAAAAATGCTAGATA 59.236 37.500 0.00 0.00 41.69 1.98
210 211 5.095490 GTGCCACACAAAAATGCTAGATAC 58.905 41.667 0.00 0.00 34.08 2.24
211 212 4.764308 TGCCACACAAAAATGCTAGATACA 59.236 37.500 0.00 0.00 0.00 2.29
212 213 5.095490 GCCACACAAAAATGCTAGATACAC 58.905 41.667 0.00 0.00 0.00 2.90
213 214 5.323900 CCACACAAAAATGCTAGATACACG 58.676 41.667 0.00 0.00 0.00 4.49
214 215 5.323900 CACACAAAAATGCTAGATACACGG 58.676 41.667 0.00 0.00 0.00 4.94
215 216 5.121611 CACACAAAAATGCTAGATACACGGA 59.878 40.000 0.00 0.00 0.00 4.69
216 217 5.121768 ACACAAAAATGCTAGATACACGGAC 59.878 40.000 0.00 0.00 0.00 4.79
217 218 5.351465 CACAAAAATGCTAGATACACGGACT 59.649 40.000 0.00 0.00 0.00 3.85
218 219 6.533723 CACAAAAATGCTAGATACACGGACTA 59.466 38.462 0.00 0.00 0.00 2.59
219 220 7.064134 CACAAAAATGCTAGATACACGGACTAA 59.936 37.037 0.00 0.00 0.00 2.24
220 221 7.604927 ACAAAAATGCTAGATACACGGACTAAA 59.395 33.333 0.00 0.00 0.00 1.85
221 222 7.772332 AAAATGCTAGATACACGGACTAAAG 57.228 36.000 0.00 0.00 0.00 1.85
222 223 4.303086 TGCTAGATACACGGACTAAAGC 57.697 45.455 0.00 0.00 0.00 3.51
223 224 3.697542 TGCTAGATACACGGACTAAAGCA 59.302 43.478 0.00 0.00 0.00 3.91
224 225 4.158949 TGCTAGATACACGGACTAAAGCAA 59.841 41.667 0.00 0.00 0.00 3.91
225 226 4.503370 GCTAGATACACGGACTAAAGCAAC 59.497 45.833 0.00 0.00 0.00 4.17
226 227 3.508762 AGATACACGGACTAAAGCAACG 58.491 45.455 0.00 0.00 0.00 4.10
227 228 2.068837 TACACGGACTAAAGCAACGG 57.931 50.000 0.00 0.00 0.00 4.44
228 229 0.390124 ACACGGACTAAAGCAACGGA 59.610 50.000 0.00 0.00 0.00 4.69
229 230 1.202557 ACACGGACTAAAGCAACGGAA 60.203 47.619 0.00 0.00 0.00 4.30
230 231 1.193874 CACGGACTAAAGCAACGGAAC 59.806 52.381 0.00 0.00 0.00 3.62
609 610 2.785258 GCGCCAAGCCTCGTAAAG 59.215 61.111 0.00 0.00 40.81 1.85
610 611 2.785258 CGCCAAGCCTCGTAAAGC 59.215 61.111 0.00 0.00 0.00 3.51
611 612 1.741770 CGCCAAGCCTCGTAAAGCT 60.742 57.895 0.00 0.00 42.40 3.74
612 613 1.696832 CGCCAAGCCTCGTAAAGCTC 61.697 60.000 0.00 0.00 38.74 4.09
613 614 1.369839 GCCAAGCCTCGTAAAGCTCC 61.370 60.000 0.00 0.00 38.74 4.70
614 615 1.084370 CCAAGCCTCGTAAAGCTCCG 61.084 60.000 0.00 0.00 38.74 4.63
615 616 0.389948 CAAGCCTCGTAAAGCTCCGT 60.390 55.000 0.00 0.00 38.74 4.69
616 617 0.320697 AAGCCTCGTAAAGCTCCGTT 59.679 50.000 0.00 0.00 38.74 4.44
617 618 0.389948 AGCCTCGTAAAGCTCCGTTG 60.390 55.000 0.00 0.00 32.71 4.10
618 619 0.389426 GCCTCGTAAAGCTCCGTTGA 60.389 55.000 0.00 0.00 0.00 3.18
619 620 1.739371 GCCTCGTAAAGCTCCGTTGAT 60.739 52.381 0.00 0.00 0.00 2.57
620 621 1.927174 CCTCGTAAAGCTCCGTTGATG 59.073 52.381 0.00 0.00 0.00 3.07
621 622 2.607187 CTCGTAAAGCTCCGTTGATGT 58.393 47.619 0.00 0.00 0.00 3.06
622 623 3.428452 CCTCGTAAAGCTCCGTTGATGTA 60.428 47.826 0.00 0.00 0.00 2.29
623 624 3.766151 TCGTAAAGCTCCGTTGATGTAG 58.234 45.455 0.00 0.00 0.00 2.74
624 625 2.281762 CGTAAAGCTCCGTTGATGTAGC 59.718 50.000 0.00 0.00 35.16 3.58
625 626 2.472695 AAAGCTCCGTTGATGTAGCA 57.527 45.000 0.00 0.00 37.44 3.49
626 627 2.472695 AAGCTCCGTTGATGTAGCAA 57.527 45.000 0.00 0.00 37.44 3.91
627 628 2.472695 AGCTCCGTTGATGTAGCAAA 57.527 45.000 0.00 0.00 37.44 3.68
628 629 2.350522 AGCTCCGTTGATGTAGCAAAG 58.649 47.619 0.00 0.00 37.44 2.77
629 630 1.202076 GCTCCGTTGATGTAGCAAAGC 60.202 52.381 0.00 0.00 35.05 3.51
630 631 1.398390 CTCCGTTGATGTAGCAAAGCC 59.602 52.381 0.00 0.00 0.00 4.35
631 632 0.096976 CCGTTGATGTAGCAAAGCCG 59.903 55.000 0.00 0.00 0.00 5.52
632 633 0.096976 CGTTGATGTAGCAAAGCCGG 59.903 55.000 0.00 0.00 0.00 6.13
633 634 1.165270 GTTGATGTAGCAAAGCCGGT 58.835 50.000 1.90 0.00 0.00 5.28
634 635 1.135689 GTTGATGTAGCAAAGCCGGTG 60.136 52.381 1.90 0.00 0.00 4.94
635 636 0.036164 TGATGTAGCAAAGCCGGTGT 59.964 50.000 1.90 0.00 0.00 4.16
636 637 0.447801 GATGTAGCAAAGCCGGTGTG 59.552 55.000 1.90 0.00 0.00 3.82
637 638 0.250727 ATGTAGCAAAGCCGGTGTGT 60.251 50.000 1.90 0.00 0.00 3.72
638 639 0.464735 TGTAGCAAAGCCGGTGTGTT 60.465 50.000 1.90 0.00 0.00 3.32
639 640 1.202663 TGTAGCAAAGCCGGTGTGTTA 60.203 47.619 1.90 0.00 0.00 2.41
640 641 1.196127 GTAGCAAAGCCGGTGTGTTAC 59.804 52.381 1.90 7.78 0.00 2.50
641 642 0.464735 AGCAAAGCCGGTGTGTTACA 60.465 50.000 1.90 0.00 0.00 2.41
651 652 1.648504 GTGTGTTACACCTATCCGGC 58.351 55.000 13.29 0.00 43.05 6.13
652 653 1.066716 GTGTGTTACACCTATCCGGCA 60.067 52.381 13.29 0.00 43.05 5.69
653 654 1.834896 TGTGTTACACCTATCCGGCAT 59.165 47.619 13.29 0.00 35.61 4.40
654 655 3.032459 TGTGTTACACCTATCCGGCATA 58.968 45.455 13.29 0.00 35.61 3.14
655 656 3.451540 TGTGTTACACCTATCCGGCATAA 59.548 43.478 13.29 0.00 35.61 1.90
656 657 4.056050 GTGTTACACCTATCCGGCATAAG 58.944 47.826 3.79 0.00 35.61 1.73
657 658 3.070446 TGTTACACCTATCCGGCATAAGG 59.930 47.826 0.00 2.87 35.61 2.69
658 659 0.396811 ACACCTATCCGGCATAAGGC 59.603 55.000 0.00 0.00 43.74 4.35
670 671 1.401905 GCATAAGGCCTTGTACAGTGC 59.598 52.381 28.77 21.08 36.11 4.40
671 672 2.941415 GCATAAGGCCTTGTACAGTGCT 60.941 50.000 28.77 0.00 36.11 4.40
672 673 3.681594 GCATAAGGCCTTGTACAGTGCTA 60.682 47.826 28.77 3.74 36.11 3.49
673 674 4.513442 CATAAGGCCTTGTACAGTGCTAA 58.487 43.478 28.77 3.15 0.00 3.09
674 675 3.502123 AAGGCCTTGTACAGTGCTAAA 57.498 42.857 19.73 0.00 0.00 1.85
675 676 3.721087 AGGCCTTGTACAGTGCTAAAT 57.279 42.857 0.00 1.47 0.00 1.40
676 677 3.347216 AGGCCTTGTACAGTGCTAAATG 58.653 45.455 0.00 0.00 0.00 2.32
677 678 2.159379 GGCCTTGTACAGTGCTAAATGC 60.159 50.000 15.59 0.60 43.25 3.56
678 679 2.749621 GCCTTGTACAGTGCTAAATGCT 59.250 45.455 10.48 0.00 43.37 3.79
679 680 3.191371 GCCTTGTACAGTGCTAAATGCTT 59.809 43.478 10.48 0.00 43.37 3.91
680 681 4.394920 GCCTTGTACAGTGCTAAATGCTTA 59.605 41.667 10.48 0.00 43.37 3.09
681 682 5.447818 GCCTTGTACAGTGCTAAATGCTTAG 60.448 44.000 10.48 0.00 43.37 2.18
682 683 5.065218 CCTTGTACAGTGCTAAATGCTTAGG 59.935 44.000 0.00 0.00 43.37 2.69
683 684 5.414789 TGTACAGTGCTAAATGCTTAGGA 57.585 39.130 0.00 0.00 43.37 2.94
684 685 5.800296 TGTACAGTGCTAAATGCTTAGGAA 58.200 37.500 0.00 0.00 37.24 3.36
685 686 5.874810 TGTACAGTGCTAAATGCTTAGGAAG 59.125 40.000 0.00 0.00 37.24 3.46
686 687 4.265073 ACAGTGCTAAATGCTTAGGAAGG 58.735 43.478 0.00 0.00 37.24 3.46
687 688 4.263506 ACAGTGCTAAATGCTTAGGAAGGT 60.264 41.667 0.00 0.00 37.24 3.50
688 689 4.702131 CAGTGCTAAATGCTTAGGAAGGTT 59.298 41.667 0.00 0.00 37.24 3.50
689 690 4.944317 AGTGCTAAATGCTTAGGAAGGTTC 59.056 41.667 0.00 0.00 37.24 3.62
690 691 4.944317 GTGCTAAATGCTTAGGAAGGTTCT 59.056 41.667 0.00 0.00 37.24 3.01
691 692 5.416013 GTGCTAAATGCTTAGGAAGGTTCTT 59.584 40.000 0.00 0.00 37.24 2.52
692 693 6.598064 GTGCTAAATGCTTAGGAAGGTTCTTA 59.402 38.462 0.00 0.00 37.24 2.10
693 694 6.823689 TGCTAAATGCTTAGGAAGGTTCTTAG 59.176 38.462 0.00 0.00 43.37 2.18
694 695 7.048512 GCTAAATGCTTAGGAAGGTTCTTAGA 58.951 38.462 0.00 0.00 35.90 2.10
695 696 7.553044 GCTAAATGCTTAGGAAGGTTCTTAGAA 59.447 37.037 0.00 0.00 35.90 2.10
696 697 9.449719 CTAAATGCTTAGGAAGGTTCTTAGAAA 57.550 33.333 0.00 0.00 32.30 2.52
697 698 8.706322 AAATGCTTAGGAAGGTTCTTAGAAAA 57.294 30.769 0.00 0.00 0.00 2.29
698 699 7.929941 ATGCTTAGGAAGGTTCTTAGAAAAG 57.070 36.000 0.00 0.00 0.00 2.27
699 700 6.838382 TGCTTAGGAAGGTTCTTAGAAAAGT 58.162 36.000 0.00 0.00 34.13 2.66
700 701 7.970102 TGCTTAGGAAGGTTCTTAGAAAAGTA 58.030 34.615 0.00 0.00 34.13 2.24
701 702 8.434392 TGCTTAGGAAGGTTCTTAGAAAAGTAA 58.566 33.333 0.00 0.00 34.13 2.24
702 703 9.281371 GCTTAGGAAGGTTCTTAGAAAAGTAAA 57.719 33.333 0.00 0.00 34.13 2.01
704 705 9.565090 TTAGGAAGGTTCTTAGAAAAGTAAACC 57.435 33.333 0.00 0.00 38.78 3.27
705 706 7.002879 AGGAAGGTTCTTAGAAAAGTAAACCC 58.997 38.462 0.00 0.00 39.07 4.11
706 707 6.072838 GGAAGGTTCTTAGAAAAGTAAACCCG 60.073 42.308 0.00 0.00 39.07 5.28
707 708 5.311265 AGGTTCTTAGAAAAGTAAACCCGG 58.689 41.667 0.00 0.00 39.07 5.73
708 709 5.072193 AGGTTCTTAGAAAAGTAAACCCGGA 59.928 40.000 0.73 0.00 39.07 5.14
709 710 5.942236 GGTTCTTAGAAAAGTAAACCCGGAT 59.058 40.000 0.73 0.00 35.21 4.18
710 711 6.432162 GGTTCTTAGAAAAGTAAACCCGGATT 59.568 38.462 0.73 0.00 35.21 3.01
711 712 7.040201 GGTTCTTAGAAAAGTAAACCCGGATTT 60.040 37.037 0.73 0.00 35.21 2.17
712 713 8.355169 GTTCTTAGAAAAGTAAACCCGGATTTT 58.645 33.333 0.00 2.34 34.13 1.82
713 714 8.102800 TCTTAGAAAAGTAAACCCGGATTTTC 57.897 34.615 0.00 7.80 39.18 2.29
714 715 7.940688 TCTTAGAAAAGTAAACCCGGATTTTCT 59.059 33.333 20.50 20.50 46.44 2.52
715 716 9.223099 CTTAGAAAAGTAAACCCGGATTTTCTA 57.777 33.333 19.26 19.26 44.28 2.10
717 718 8.467963 AGAAAAGTAAACCCGGATTTTCTAAA 57.532 30.769 0.00 0.00 44.28 1.85
718 719 8.916062 AGAAAAGTAAACCCGGATTTTCTAAAA 58.084 29.630 0.00 0.00 44.28 1.52
719 720 8.876275 AAAAGTAAACCCGGATTTTCTAAAAC 57.124 30.769 0.00 0.00 0.00 2.43
720 721 7.585579 AAGTAAACCCGGATTTTCTAAAACA 57.414 32.000 0.00 0.00 0.00 2.83
721 722 7.770366 AGTAAACCCGGATTTTCTAAAACAT 57.230 32.000 0.00 0.00 0.00 2.71
722 723 7.599171 AGTAAACCCGGATTTTCTAAAACATG 58.401 34.615 0.00 0.00 0.00 3.21
723 724 6.658188 AAACCCGGATTTTCTAAAACATGA 57.342 33.333 0.73 0.00 0.00 3.07
724 725 5.897377 ACCCGGATTTTCTAAAACATGAG 57.103 39.130 0.73 0.00 0.00 2.90
725 726 5.321927 ACCCGGATTTTCTAAAACATGAGT 58.678 37.500 0.73 0.00 0.00 3.41
726 727 5.183140 ACCCGGATTTTCTAAAACATGAGTG 59.817 40.000 0.73 0.00 0.00 3.51
727 728 5.095490 CCGGATTTTCTAAAACATGAGTGC 58.905 41.667 0.00 0.00 0.00 4.40
728 729 5.106157 CCGGATTTTCTAAAACATGAGTGCT 60.106 40.000 0.00 0.00 0.00 4.40
729 730 6.381801 CGGATTTTCTAAAACATGAGTGCTT 58.618 36.000 0.00 0.00 0.00 3.91
730 731 7.361713 CCGGATTTTCTAAAACATGAGTGCTTA 60.362 37.037 0.00 0.00 0.00 3.09
731 732 8.184192 CGGATTTTCTAAAACATGAGTGCTTAT 58.816 33.333 0.00 0.00 0.00 1.73
732 733 9.860898 GGATTTTCTAAAACATGAGTGCTTATT 57.139 29.630 0.00 0.00 0.00 1.40
738 739 9.719355 TCTAAAACATGAGTGCTTATTTCTACA 57.281 29.630 0.00 0.00 0.00 2.74
742 743 9.683069 AAACATGAGTGCTTATTTCTACAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
743 744 8.621532 ACATGAGTGCTTATTTCTACAAAAGA 57.378 30.769 0.00 0.00 0.00 2.52
744 745 8.725148 ACATGAGTGCTTATTTCTACAAAAGAG 58.275 33.333 0.00 0.00 35.05 2.85
745 746 8.939929 CATGAGTGCTTATTTCTACAAAAGAGA 58.060 33.333 0.00 0.00 35.05 3.10
746 747 8.311650 TGAGTGCTTATTTCTACAAAAGAGAC 57.688 34.615 0.00 0.00 35.05 3.36
747 748 7.116376 TGAGTGCTTATTTCTACAAAAGAGACG 59.884 37.037 0.00 0.00 35.05 4.18
748 749 6.929606 AGTGCTTATTTCTACAAAAGAGACGT 59.070 34.615 0.00 0.00 35.05 4.34
749 750 7.116519 AGTGCTTATTTCTACAAAAGAGACGTC 59.883 37.037 7.70 7.70 35.05 4.34
750 751 7.116519 GTGCTTATTTCTACAAAAGAGACGTCT 59.883 37.037 20.18 20.18 35.05 4.18
751 752 8.301720 TGCTTATTTCTACAAAAGAGACGTCTA 58.698 33.333 20.09 0.00 35.05 2.59
752 753 9.136952 GCTTATTTCTACAAAAGAGACGTCTAA 57.863 33.333 20.09 5.25 35.05 2.10
759 760 9.121517 TCTACAAAAGAGACGTCTAATTAAACG 57.878 33.333 20.09 9.73 44.22 3.60
772 773 9.096600 CGTCTAATTAAACGTCTATAAGTACCG 57.903 37.037 3.12 0.00 34.30 4.02
773 774 9.387123 GTCTAATTAAACGTCTATAAGTACCGG 57.613 37.037 0.00 0.00 0.00 5.28
774 775 9.120538 TCTAATTAAACGTCTATAAGTACCGGT 57.879 33.333 13.98 13.98 0.00 5.28
775 776 7.992180 AATTAAACGTCTATAAGTACCGGTG 57.008 36.000 19.93 0.00 0.00 4.94
806 807 8.627208 AAAAGTCTGATTCATTTCTCTAAGCA 57.373 30.769 0.00 0.00 0.00 3.91
807 808 7.608308 AAGTCTGATTCATTTCTCTAAGCAC 57.392 36.000 0.00 0.00 0.00 4.40
809 810 6.070309 AGTCTGATTCATTTCTCTAAGCACCT 60.070 38.462 0.00 0.00 0.00 4.00
810 811 6.597280 GTCTGATTCATTTCTCTAAGCACCTT 59.403 38.462 0.00 0.00 0.00 3.50
828 829 3.763897 ACCTTCCCTAAACATGTTGCATC 59.236 43.478 12.82 0.00 0.00 3.91
829 830 3.181497 CCTTCCCTAAACATGTTGCATCG 60.181 47.826 12.82 0.00 0.00 3.84
835 836 5.335269 CCCTAAACATGTTGCATCGTACAAA 60.335 40.000 12.82 0.00 0.00 2.83
837 838 3.201726 ACATGTTGCATCGTACAAAGC 57.798 42.857 0.00 0.00 0.00 3.51
874 875 3.738282 CCGAGAGTTCTTGTTCTTGAGTG 59.262 47.826 0.00 0.00 0.00 3.51
991 997 1.189524 AGTGTCGTTCCCCAATCCGA 61.190 55.000 0.00 0.00 0.00 4.55
1008 1014 4.209866 ATTCCTCCCATGGCGGCC 62.210 66.667 13.32 13.32 0.00 6.13
1022 1028 1.377725 CGGCCCAAATCACAGCTCT 60.378 57.895 0.00 0.00 0.00 4.09
1429 1443 0.101399 CTCCTTCTCATCCGTCCACG 59.899 60.000 0.00 0.00 39.44 4.94
1430 1444 0.323087 TCCTTCTCATCCGTCCACGA 60.323 55.000 0.00 0.00 43.02 4.35
1431 1445 0.179134 CCTTCTCATCCGTCCACGAC 60.179 60.000 0.00 0.00 43.02 4.34
1432 1446 0.811915 CTTCTCATCCGTCCACGACT 59.188 55.000 0.00 0.00 43.02 4.18
1433 1447 0.809385 TTCTCATCCGTCCACGACTC 59.191 55.000 0.00 0.00 43.02 3.36
1434 1448 1.030488 TCTCATCCGTCCACGACTCC 61.030 60.000 0.00 0.00 43.02 3.85
1435 1449 1.303806 TCATCCGTCCACGACTCCA 60.304 57.895 0.00 0.00 43.02 3.86
1436 1450 1.139734 CATCCGTCCACGACTCCAG 59.860 63.158 0.00 0.00 43.02 3.86
1537 1554 1.068474 CCGGACTAAACTGCGTCAAG 58.932 55.000 0.00 0.00 31.88 3.02
1624 1641 2.564947 ACTCAGCAAGGACTAAGGACTG 59.435 50.000 0.00 0.00 0.00 3.51
1628 1645 3.260884 CAGCAAGGACTAAGGACTGGTTA 59.739 47.826 0.00 0.00 0.00 2.85
1646 1663 5.483811 TGGTTATGAAATGTGAACTCGCTA 58.516 37.500 0.00 0.00 0.00 4.26
1724 1741 2.929592 GCGTGGTACTTACAAGGTGAGG 60.930 54.545 0.00 0.00 0.00 3.86
1803 1821 6.918022 GTGGACCAATTGAAGAAGTTAACTTG 59.082 38.462 25.17 8.94 36.11 3.16
1899 1917 1.548269 GGCCAAACATTCGGGATTTCA 59.452 47.619 0.00 0.00 0.00 2.69
1939 1959 3.627395 TTCGATGGCAGGTTTAGTGAT 57.373 42.857 0.00 0.00 0.00 3.06
1948 1968 1.899814 AGGTTTAGTGATGCGAGGACA 59.100 47.619 0.00 0.00 0.00 4.02
2022 2042 3.068024 AGAAAATTGCCGTGTGTGTCAAT 59.932 39.130 0.00 0.00 0.00 2.57
2145 2165 0.831711 GGGGGCACACACCAAAAGAT 60.832 55.000 0.00 0.00 0.00 2.40
2164 2184 7.657023 AAAGATAGTAACGAGGGTAGTTCAT 57.343 36.000 0.00 0.00 33.42 2.57
2304 2324 6.239458 GGGAACAAAAGGGATAATCAACAACA 60.239 38.462 0.00 0.00 0.00 3.33
2305 2325 7.213678 GGAACAAAAGGGATAATCAACAACAA 58.786 34.615 0.00 0.00 0.00 2.83
2306 2326 7.170828 GGAACAAAAGGGATAATCAACAACAAC 59.829 37.037 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.305930 GGTGTTCCACAAGCCCGATC 61.306 60.000 0.00 0.00 35.86 3.69
1 2 1.303317 GGTGTTCCACAAGCCCGAT 60.303 57.895 0.00 0.00 35.86 4.18
2 3 1.990160 AAGGTGTTCCACAAGCCCGA 61.990 55.000 0.00 0.00 35.86 5.14
3 4 1.528309 AAGGTGTTCCACAAGCCCG 60.528 57.895 0.00 0.00 35.86 6.13
4 5 1.463553 CCAAGGTGTTCCACAAGCCC 61.464 60.000 0.00 0.00 35.86 5.19
5 6 0.467290 TCCAAGGTGTTCCACAAGCC 60.467 55.000 0.00 0.00 35.86 4.35
6 7 1.398692 TTCCAAGGTGTTCCACAAGC 58.601 50.000 0.00 0.00 35.86 4.01
7 8 3.005791 GGAATTCCAAGGTGTTCCACAAG 59.994 47.826 20.04 0.00 39.86 3.16
8 9 2.962421 GGAATTCCAAGGTGTTCCACAA 59.038 45.455 20.04 0.00 39.86 3.33
9 10 2.176798 AGGAATTCCAAGGTGTTCCACA 59.823 45.455 26.22 0.00 41.98 4.17
10 11 2.820197 GAGGAATTCCAAGGTGTTCCAC 59.180 50.000 26.22 13.44 41.98 4.02
11 12 2.716424 AGAGGAATTCCAAGGTGTTCCA 59.284 45.455 26.22 0.00 41.98 3.53
12 13 3.084786 CAGAGGAATTCCAAGGTGTTCC 58.915 50.000 26.22 13.62 40.28 3.62
13 14 2.489722 GCAGAGGAATTCCAAGGTGTTC 59.510 50.000 26.22 12.76 38.89 3.18
14 15 2.108952 AGCAGAGGAATTCCAAGGTGTT 59.891 45.455 26.22 12.07 38.89 3.32
15 16 1.707427 AGCAGAGGAATTCCAAGGTGT 59.293 47.619 26.22 4.17 38.89 4.16
16 17 2.503895 AGCAGAGGAATTCCAAGGTG 57.496 50.000 26.22 16.85 38.89 4.00
17 18 3.181429 TGAAAGCAGAGGAATTCCAAGGT 60.181 43.478 26.22 16.73 38.89 3.50
18 19 3.192212 GTGAAAGCAGAGGAATTCCAAGG 59.808 47.826 26.22 14.86 38.89 3.61
19 20 3.822735 TGTGAAAGCAGAGGAATTCCAAG 59.177 43.478 26.22 15.51 38.89 3.61
20 21 3.822735 CTGTGAAAGCAGAGGAATTCCAA 59.177 43.478 26.22 0.00 38.70 3.53
21 22 3.181440 ACTGTGAAAGCAGAGGAATTCCA 60.181 43.478 26.22 0.00 39.58 3.53
22 23 3.190118 CACTGTGAAAGCAGAGGAATTCC 59.810 47.826 17.31 17.31 39.58 3.01
23 24 3.365767 GCACTGTGAAAGCAGAGGAATTC 60.366 47.826 12.86 0.00 39.58 2.17
24 25 2.555757 GCACTGTGAAAGCAGAGGAATT 59.444 45.455 12.86 0.00 39.58 2.17
25 26 2.157738 GCACTGTGAAAGCAGAGGAAT 58.842 47.619 12.86 0.00 39.58 3.01
26 27 1.597742 GCACTGTGAAAGCAGAGGAA 58.402 50.000 12.86 0.00 39.58 3.36
27 28 0.250467 GGCACTGTGAAAGCAGAGGA 60.250 55.000 12.86 0.00 39.58 3.71
28 29 1.239968 GGGCACTGTGAAAGCAGAGG 61.240 60.000 12.86 0.00 39.58 3.69
29 30 0.535780 TGGGCACTGTGAAAGCAGAG 60.536 55.000 12.86 0.00 40.97 3.35
30 31 0.106769 TTGGGCACTGTGAAAGCAGA 60.107 50.000 12.86 0.00 39.62 4.26
31 32 0.313043 CTTGGGCACTGTGAAAGCAG 59.687 55.000 12.86 0.00 41.92 4.24
32 33 1.737355 GCTTGGGCACTGTGAAAGCA 61.737 55.000 25.32 3.72 42.19 3.91
33 34 1.006922 GCTTGGGCACTGTGAAAGC 60.007 57.895 20.02 20.02 38.54 3.51
34 35 1.662044 GGCTTGGGCACTGTGAAAG 59.338 57.895 12.86 12.07 40.87 2.62
35 36 2.192861 CGGCTTGGGCACTGTGAAA 61.193 57.895 12.86 1.59 40.87 2.69
36 37 2.594303 CGGCTTGGGCACTGTGAA 60.594 61.111 12.86 0.00 40.87 3.18
45 46 4.161295 TGATCGAGGCGGCTTGGG 62.161 66.667 24.76 12.23 0.00 4.12
46 47 2.892425 GTGATCGAGGCGGCTTGG 60.892 66.667 24.76 14.71 0.00 3.61
47 48 1.298157 TTTGTGATCGAGGCGGCTTG 61.298 55.000 19.96 19.96 0.00 4.01
48 49 0.605319 TTTTGTGATCGAGGCGGCTT 60.605 50.000 14.76 0.00 0.00 4.35
49 50 1.003839 TTTTGTGATCGAGGCGGCT 60.004 52.632 13.09 13.09 0.00 5.52
50 51 1.019278 TCTTTTGTGATCGAGGCGGC 61.019 55.000 0.00 0.00 0.00 6.53
51 52 1.002366 CTCTTTTGTGATCGAGGCGG 58.998 55.000 0.00 0.00 0.00 6.13
52 53 1.656095 GACTCTTTTGTGATCGAGGCG 59.344 52.381 0.00 0.00 0.00 5.52
53 54 1.656095 CGACTCTTTTGTGATCGAGGC 59.344 52.381 0.00 0.00 34.77 4.70
54 55 3.217599 TCGACTCTTTTGTGATCGAGG 57.782 47.619 0.00 0.00 36.92 4.63
55 56 3.365220 GGTTCGACTCTTTTGTGATCGAG 59.635 47.826 0.00 0.00 42.24 4.04
56 57 3.314553 GGTTCGACTCTTTTGTGATCGA 58.685 45.455 0.00 0.00 39.86 3.59
57 58 2.412089 GGGTTCGACTCTTTTGTGATCG 59.588 50.000 0.00 0.00 0.00 3.69
58 59 3.665190 AGGGTTCGACTCTTTTGTGATC 58.335 45.455 0.00 0.00 0.00 2.92
59 60 3.771577 AGGGTTCGACTCTTTTGTGAT 57.228 42.857 0.00 0.00 0.00 3.06
60 61 3.554337 GCTAGGGTTCGACTCTTTTGTGA 60.554 47.826 0.00 0.00 27.79 3.58
61 62 2.737252 GCTAGGGTTCGACTCTTTTGTG 59.263 50.000 0.00 0.00 27.79 3.33
62 63 2.633481 AGCTAGGGTTCGACTCTTTTGT 59.367 45.455 0.00 0.00 27.79 2.83
63 64 3.320673 AGCTAGGGTTCGACTCTTTTG 57.679 47.619 0.00 0.00 27.79 2.44
64 65 5.395435 GGATAAGCTAGGGTTCGACTCTTTT 60.395 44.000 0.00 0.00 27.79 2.27
65 66 4.099727 GGATAAGCTAGGGTTCGACTCTTT 59.900 45.833 0.00 0.00 27.79 2.52
66 67 3.637694 GGATAAGCTAGGGTTCGACTCTT 59.362 47.826 0.00 0.00 27.79 2.85
67 68 3.117436 AGGATAAGCTAGGGTTCGACTCT 60.117 47.826 0.00 0.00 31.14 3.24
68 69 3.224269 AGGATAAGCTAGGGTTCGACTC 58.776 50.000 0.00 0.00 0.00 3.36
69 70 3.315880 AGGATAAGCTAGGGTTCGACT 57.684 47.619 0.00 0.00 0.00 4.18
70 71 3.718815 CAAGGATAAGCTAGGGTTCGAC 58.281 50.000 0.00 0.00 0.00 4.20
71 72 2.102588 GCAAGGATAAGCTAGGGTTCGA 59.897 50.000 0.00 0.00 0.00 3.71
72 73 2.484889 GCAAGGATAAGCTAGGGTTCG 58.515 52.381 0.00 0.00 0.00 3.95
73 74 2.487445 GGGCAAGGATAAGCTAGGGTTC 60.487 54.545 0.00 0.00 0.00 3.62
74 75 1.495148 GGGCAAGGATAAGCTAGGGTT 59.505 52.381 0.00 0.00 0.00 4.11
75 76 1.141185 GGGCAAGGATAAGCTAGGGT 58.859 55.000 0.00 0.00 0.00 4.34
76 77 1.439543 AGGGCAAGGATAAGCTAGGG 58.560 55.000 0.00 0.00 0.00 3.53
77 78 2.439507 TCAAGGGCAAGGATAAGCTAGG 59.560 50.000 0.00 0.00 0.00 3.02
78 79 3.845781 TCAAGGGCAAGGATAAGCTAG 57.154 47.619 0.00 0.00 0.00 3.42
79 80 3.685550 GCTTCAAGGGCAAGGATAAGCTA 60.686 47.826 0.00 0.00 35.98 3.32
80 81 2.947695 GCTTCAAGGGCAAGGATAAGCT 60.948 50.000 0.00 0.00 35.98 3.74
81 82 1.406898 GCTTCAAGGGCAAGGATAAGC 59.593 52.381 0.00 0.00 0.00 3.09
82 83 2.027385 GGCTTCAAGGGCAAGGATAAG 58.973 52.381 0.00 0.00 0.00 1.73
83 84 1.640670 AGGCTTCAAGGGCAAGGATAA 59.359 47.619 0.00 0.00 0.00 1.75
84 85 1.064463 CAGGCTTCAAGGGCAAGGATA 60.064 52.381 0.00 0.00 0.00 2.59
85 86 0.324091 CAGGCTTCAAGGGCAAGGAT 60.324 55.000 0.00 0.00 0.00 3.24
86 87 1.075482 CAGGCTTCAAGGGCAAGGA 59.925 57.895 0.00 0.00 0.00 3.36
87 88 1.228675 ACAGGCTTCAAGGGCAAGG 60.229 57.895 0.00 0.00 0.00 3.61
88 89 1.246737 GGACAGGCTTCAAGGGCAAG 61.247 60.000 0.00 0.00 0.00 4.01
89 90 1.228552 GGACAGGCTTCAAGGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
90 91 0.840288 TAGGACAGGCTTCAAGGGCA 60.840 55.000 0.00 0.00 0.00 5.36
91 92 0.107459 CTAGGACAGGCTTCAAGGGC 60.107 60.000 0.00 0.00 0.00 5.19
92 93 0.107459 GCTAGGACAGGCTTCAAGGG 60.107 60.000 0.00 0.00 0.00 3.95
93 94 0.908198 AGCTAGGACAGGCTTCAAGG 59.092 55.000 0.00 0.00 34.96 3.61
94 95 1.830477 AGAGCTAGGACAGGCTTCAAG 59.170 52.381 0.00 0.00 39.05 3.02
95 96 1.827969 GAGAGCTAGGACAGGCTTCAA 59.172 52.381 0.00 0.00 39.05 2.69
96 97 1.272704 TGAGAGCTAGGACAGGCTTCA 60.273 52.381 0.00 0.00 39.05 3.02
97 98 1.408702 CTGAGAGCTAGGACAGGCTTC 59.591 57.143 0.00 0.00 39.05 3.86
98 99 1.484038 CTGAGAGCTAGGACAGGCTT 58.516 55.000 0.00 0.00 39.05 4.35
99 100 1.042559 GCTGAGAGCTAGGACAGGCT 61.043 60.000 0.00 0.00 38.45 4.58
100 101 1.441311 GCTGAGAGCTAGGACAGGC 59.559 63.158 0.00 0.00 38.45 4.85
101 102 0.685785 TGGCTGAGAGCTAGGACAGG 60.686 60.000 0.00 0.00 41.99 4.00
102 103 0.459489 GTGGCTGAGAGCTAGGACAG 59.541 60.000 0.00 0.00 41.99 3.51
103 104 0.972983 GGTGGCTGAGAGCTAGGACA 60.973 60.000 0.00 0.00 41.99 4.02
104 105 0.972983 TGGTGGCTGAGAGCTAGGAC 60.973 60.000 0.00 0.00 41.99 3.85
105 106 0.252239 TTGGTGGCTGAGAGCTAGGA 60.252 55.000 0.00 0.00 41.99 2.94
106 107 0.107945 GTTGGTGGCTGAGAGCTAGG 60.108 60.000 0.00 0.00 41.99 3.02
107 108 0.107945 GGTTGGTGGCTGAGAGCTAG 60.108 60.000 0.00 0.00 41.99 3.42
108 109 0.835971 TGGTTGGTGGCTGAGAGCTA 60.836 55.000 0.00 0.00 41.99 3.32
109 110 2.121992 CTGGTTGGTGGCTGAGAGCT 62.122 60.000 0.00 0.00 41.99 4.09
110 111 1.673665 CTGGTTGGTGGCTGAGAGC 60.674 63.158 0.00 0.00 41.46 4.09
111 112 0.604780 CACTGGTTGGTGGCTGAGAG 60.605 60.000 0.00 0.00 33.95 3.20
112 113 1.053835 TCACTGGTTGGTGGCTGAGA 61.054 55.000 0.00 0.00 37.75 3.27
113 114 0.179020 TTCACTGGTTGGTGGCTGAG 60.179 55.000 0.00 0.00 37.75 3.35
114 115 0.478072 ATTCACTGGTTGGTGGCTGA 59.522 50.000 0.00 0.00 37.75 4.26
115 116 1.331214 AATTCACTGGTTGGTGGCTG 58.669 50.000 0.00 0.00 37.75 4.85
116 117 1.688197 CAAATTCACTGGTTGGTGGCT 59.312 47.619 0.00 0.00 37.75 4.75
117 118 1.412343 ACAAATTCACTGGTTGGTGGC 59.588 47.619 0.00 0.00 37.75 5.01
118 119 2.958355 AGACAAATTCACTGGTTGGTGG 59.042 45.455 0.00 0.00 37.75 4.61
119 120 3.381272 ACAGACAAATTCACTGGTTGGTG 59.619 43.478 0.00 0.00 38.44 4.17
120 121 3.631250 ACAGACAAATTCACTGGTTGGT 58.369 40.909 0.00 0.00 36.17 3.67
121 122 3.631686 TGACAGACAAATTCACTGGTTGG 59.368 43.478 0.00 0.00 36.17 3.77
122 123 4.336433 AGTGACAGACAAATTCACTGGTTG 59.664 41.667 2.74 0.00 46.50 3.77
123 124 4.526970 AGTGACAGACAAATTCACTGGTT 58.473 39.130 2.74 0.00 46.50 3.67
124 125 4.156455 AGTGACAGACAAATTCACTGGT 57.844 40.909 2.74 0.00 46.50 4.00
128 129 5.296780 TCTTGGAAGTGACAGACAAATTCAC 59.703 40.000 0.00 0.00 40.04 3.18
129 130 5.436175 TCTTGGAAGTGACAGACAAATTCA 58.564 37.500 0.00 0.00 31.89 2.57
130 131 6.566197 ATCTTGGAAGTGACAGACAAATTC 57.434 37.500 0.00 0.00 0.00 2.17
131 132 8.517878 CAATATCTTGGAAGTGACAGACAAATT 58.482 33.333 0.00 0.00 0.00 1.82
132 133 7.884877 TCAATATCTTGGAAGTGACAGACAAAT 59.115 33.333 0.00 0.00 32.95 2.32
133 134 7.223584 TCAATATCTTGGAAGTGACAGACAAA 58.776 34.615 0.00 0.00 32.95 2.83
134 135 6.768483 TCAATATCTTGGAAGTGACAGACAA 58.232 36.000 0.00 0.00 32.95 3.18
135 136 6.358974 TCAATATCTTGGAAGTGACAGACA 57.641 37.500 0.00 0.00 32.95 3.41
136 137 6.820656 ACATCAATATCTTGGAAGTGACAGAC 59.179 38.462 0.00 0.00 32.95 3.51
137 138 6.950842 ACATCAATATCTTGGAAGTGACAGA 58.049 36.000 0.00 0.00 32.95 3.41
138 139 7.621428 AACATCAATATCTTGGAAGTGACAG 57.379 36.000 0.00 0.00 32.95 3.51
139 140 9.685276 ATTAACATCAATATCTTGGAAGTGACA 57.315 29.630 0.00 0.00 32.95 3.58
143 144 8.844244 GCAGATTAACATCAATATCTTGGAAGT 58.156 33.333 0.00 0.00 32.95 3.01
144 145 8.843262 TGCAGATTAACATCAATATCTTGGAAG 58.157 33.333 0.00 0.00 32.95 3.46
145 146 8.750515 TGCAGATTAACATCAATATCTTGGAA 57.249 30.769 0.00 0.00 32.95 3.53
146 147 7.994911 ACTGCAGATTAACATCAATATCTTGGA 59.005 33.333 23.35 0.00 32.95 3.53
147 148 8.162878 ACTGCAGATTAACATCAATATCTTGG 57.837 34.615 23.35 0.00 32.95 3.61
149 150 9.499479 CCTACTGCAGATTAACATCAATATCTT 57.501 33.333 23.35 0.00 0.00 2.40
150 151 8.654997 ACCTACTGCAGATTAACATCAATATCT 58.345 33.333 23.35 0.00 0.00 1.98
151 152 8.839310 ACCTACTGCAGATTAACATCAATATC 57.161 34.615 23.35 0.00 0.00 1.63
154 155 9.461312 TTTAACCTACTGCAGATTAACATCAAT 57.539 29.630 23.35 0.00 0.00 2.57
155 156 8.856153 TTTAACCTACTGCAGATTAACATCAA 57.144 30.769 23.35 0.00 0.00 2.57
156 157 9.109393 GATTTAACCTACTGCAGATTAACATCA 57.891 33.333 23.35 5.21 0.00 3.07
157 158 9.331282 AGATTTAACCTACTGCAGATTAACATC 57.669 33.333 23.35 18.81 0.00 3.06
158 159 9.331282 GAGATTTAACCTACTGCAGATTAACAT 57.669 33.333 23.35 13.35 0.00 2.71
159 160 7.491372 CGAGATTTAACCTACTGCAGATTAACA 59.509 37.037 23.35 10.01 0.00 2.41
160 161 7.491696 ACGAGATTTAACCTACTGCAGATTAAC 59.508 37.037 23.35 8.39 0.00 2.01
161 162 7.491372 CACGAGATTTAACCTACTGCAGATTAA 59.509 37.037 23.35 15.26 0.00 1.40
162 163 6.978659 CACGAGATTTAACCTACTGCAGATTA 59.021 38.462 23.35 10.21 0.00 1.75
163 164 5.812642 CACGAGATTTAACCTACTGCAGATT 59.187 40.000 23.35 11.21 0.00 2.40
164 165 5.105310 ACACGAGATTTAACCTACTGCAGAT 60.105 40.000 23.35 7.41 0.00 2.90
165 166 4.219944 ACACGAGATTTAACCTACTGCAGA 59.780 41.667 23.35 2.95 0.00 4.26
166 167 4.327357 CACACGAGATTTAACCTACTGCAG 59.673 45.833 13.48 13.48 0.00 4.41
167 168 4.242475 CACACGAGATTTAACCTACTGCA 58.758 43.478 0.00 0.00 0.00 4.41
168 169 3.062234 GCACACGAGATTTAACCTACTGC 59.938 47.826 0.00 0.00 0.00 4.40
169 170 3.617263 GGCACACGAGATTTAACCTACTG 59.383 47.826 0.00 0.00 0.00 2.74
170 171 3.259876 TGGCACACGAGATTTAACCTACT 59.740 43.478 0.00 0.00 0.00 2.57
171 172 3.592059 TGGCACACGAGATTTAACCTAC 58.408 45.455 0.00 0.00 0.00 3.18
172 173 3.965379 TGGCACACGAGATTTAACCTA 57.035 42.857 0.00 0.00 0.00 3.08
173 174 2.851263 TGGCACACGAGATTTAACCT 57.149 45.000 0.00 0.00 0.00 3.50
186 187 2.954989 TCTAGCATTTTTGTGTGGCACA 59.045 40.909 17.96 17.96 43.02 4.57
187 188 3.641437 TCTAGCATTTTTGTGTGGCAC 57.359 42.857 11.55 11.55 34.56 5.01
188 189 4.764308 TGTATCTAGCATTTTTGTGTGGCA 59.236 37.500 0.00 0.00 0.00 4.92
189 190 5.095490 GTGTATCTAGCATTTTTGTGTGGC 58.905 41.667 0.00 0.00 0.00 5.01
190 191 5.323900 CGTGTATCTAGCATTTTTGTGTGG 58.676 41.667 0.00 0.00 0.00 4.17
191 192 5.121611 TCCGTGTATCTAGCATTTTTGTGTG 59.878 40.000 0.00 0.00 0.00 3.82
192 193 5.121768 GTCCGTGTATCTAGCATTTTTGTGT 59.878 40.000 0.00 0.00 0.00 3.72
193 194 5.351465 AGTCCGTGTATCTAGCATTTTTGTG 59.649 40.000 0.00 0.00 0.00 3.33
194 195 5.488341 AGTCCGTGTATCTAGCATTTTTGT 58.512 37.500 0.00 0.00 0.00 2.83
195 196 7.534085 TTAGTCCGTGTATCTAGCATTTTTG 57.466 36.000 0.00 0.00 0.00 2.44
196 197 7.201617 GCTTTAGTCCGTGTATCTAGCATTTTT 60.202 37.037 0.00 0.00 0.00 1.94
197 198 6.258068 GCTTTAGTCCGTGTATCTAGCATTTT 59.742 38.462 0.00 0.00 0.00 1.82
198 199 5.753921 GCTTTAGTCCGTGTATCTAGCATTT 59.246 40.000 0.00 0.00 0.00 2.32
199 200 5.163447 TGCTTTAGTCCGTGTATCTAGCATT 60.163 40.000 0.00 0.00 0.00 3.56
200 201 4.341235 TGCTTTAGTCCGTGTATCTAGCAT 59.659 41.667 0.00 0.00 0.00 3.79
201 202 3.697542 TGCTTTAGTCCGTGTATCTAGCA 59.302 43.478 0.00 0.00 0.00 3.49
202 203 4.303086 TGCTTTAGTCCGTGTATCTAGC 57.697 45.455 0.00 0.00 0.00 3.42
203 204 4.733887 CGTTGCTTTAGTCCGTGTATCTAG 59.266 45.833 0.00 0.00 0.00 2.43
204 205 4.439153 CCGTTGCTTTAGTCCGTGTATCTA 60.439 45.833 0.00 0.00 0.00 1.98
205 206 3.508762 CGTTGCTTTAGTCCGTGTATCT 58.491 45.455 0.00 0.00 0.00 1.98
206 207 2.601763 CCGTTGCTTTAGTCCGTGTATC 59.398 50.000 0.00 0.00 0.00 2.24
207 208 2.231964 TCCGTTGCTTTAGTCCGTGTAT 59.768 45.455 0.00 0.00 0.00 2.29
208 209 1.612950 TCCGTTGCTTTAGTCCGTGTA 59.387 47.619 0.00 0.00 0.00 2.90
209 210 0.390124 TCCGTTGCTTTAGTCCGTGT 59.610 50.000 0.00 0.00 0.00 4.49
210 211 1.193874 GTTCCGTTGCTTTAGTCCGTG 59.806 52.381 0.00 0.00 0.00 4.94
211 212 1.505425 GTTCCGTTGCTTTAGTCCGT 58.495 50.000 0.00 0.00 0.00 4.69
592 593 2.785258 CTTTACGAGGCTTGGCGC 59.215 61.111 6.71 0.00 38.13 6.53
593 594 1.696832 GAGCTTTACGAGGCTTGGCG 61.697 60.000 6.71 0.00 39.05 5.69
594 595 1.369839 GGAGCTTTACGAGGCTTGGC 61.370 60.000 6.71 0.00 39.05 4.52
595 596 1.084370 CGGAGCTTTACGAGGCTTGG 61.084 60.000 6.71 0.00 39.05 3.61
596 597 0.389948 ACGGAGCTTTACGAGGCTTG 60.390 55.000 12.37 0.00 39.05 4.01
597 598 0.320697 AACGGAGCTTTACGAGGCTT 59.679 50.000 12.37 0.00 39.05 4.35
598 599 0.389948 CAACGGAGCTTTACGAGGCT 60.390 55.000 12.37 0.00 41.88 4.58
599 600 0.389426 TCAACGGAGCTTTACGAGGC 60.389 55.000 12.37 0.00 0.00 4.70
600 601 1.927174 CATCAACGGAGCTTTACGAGG 59.073 52.381 12.37 5.07 0.00 4.63
601 602 2.607187 ACATCAACGGAGCTTTACGAG 58.393 47.619 12.37 5.66 0.00 4.18
602 603 2.736144 ACATCAACGGAGCTTTACGA 57.264 45.000 12.37 0.00 0.00 3.43
603 604 2.281762 GCTACATCAACGGAGCTTTACG 59.718 50.000 5.09 5.09 32.04 3.18
604 605 3.259064 TGCTACATCAACGGAGCTTTAC 58.741 45.455 0.00 0.00 35.89 2.01
605 606 3.603158 TGCTACATCAACGGAGCTTTA 57.397 42.857 0.00 0.00 35.89 1.85
606 607 2.472695 TGCTACATCAACGGAGCTTT 57.527 45.000 0.00 0.00 35.89 3.51
607 608 2.472695 TTGCTACATCAACGGAGCTT 57.527 45.000 0.00 0.00 35.89 3.74
608 609 2.350522 CTTTGCTACATCAACGGAGCT 58.649 47.619 0.00 0.00 35.89 4.09
609 610 1.202076 GCTTTGCTACATCAACGGAGC 60.202 52.381 0.00 0.00 35.43 4.70
610 611 1.398390 GGCTTTGCTACATCAACGGAG 59.602 52.381 0.00 0.00 0.00 4.63
611 612 1.448985 GGCTTTGCTACATCAACGGA 58.551 50.000 0.00 0.00 0.00 4.69
612 613 0.096976 CGGCTTTGCTACATCAACGG 59.903 55.000 0.00 0.00 0.00 4.44
613 614 0.096976 CCGGCTTTGCTACATCAACG 59.903 55.000 0.00 0.00 0.00 4.10
614 615 1.135689 CACCGGCTTTGCTACATCAAC 60.136 52.381 0.00 0.00 0.00 3.18
615 616 1.164411 CACCGGCTTTGCTACATCAA 58.836 50.000 0.00 0.00 0.00 2.57
616 617 0.036164 ACACCGGCTTTGCTACATCA 59.964 50.000 0.00 0.00 0.00 3.07
617 618 0.447801 CACACCGGCTTTGCTACATC 59.552 55.000 0.00 0.00 0.00 3.06
618 619 0.250727 ACACACCGGCTTTGCTACAT 60.251 50.000 0.00 0.00 0.00 2.29
619 620 0.464735 AACACACCGGCTTTGCTACA 60.465 50.000 0.00 0.00 0.00 2.74
620 621 1.196127 GTAACACACCGGCTTTGCTAC 59.804 52.381 0.00 0.00 0.00 3.58
621 622 1.202663 TGTAACACACCGGCTTTGCTA 60.203 47.619 0.00 0.00 0.00 3.49
622 623 0.464735 TGTAACACACCGGCTTTGCT 60.465 50.000 0.00 0.00 0.00 3.91
623 624 0.317519 GTGTAACACACCGGCTTTGC 60.318 55.000 0.00 0.00 43.05 3.68
624 625 3.837669 GTGTAACACACCGGCTTTG 57.162 52.632 0.00 0.00 43.05 2.77
633 634 1.268066 TGCCGGATAGGTGTAACACA 58.732 50.000 5.05 0.00 43.70 3.72
634 635 2.614829 ATGCCGGATAGGTGTAACAC 57.385 50.000 5.05 0.00 43.70 3.32
635 636 3.070446 CCTTATGCCGGATAGGTGTAACA 59.930 47.826 5.05 0.00 43.70 2.41
636 637 3.660865 CCTTATGCCGGATAGGTGTAAC 58.339 50.000 5.05 0.00 43.70 2.50
637 638 2.038033 GCCTTATGCCGGATAGGTGTAA 59.962 50.000 5.05 0.00 43.70 2.41
638 639 1.621814 GCCTTATGCCGGATAGGTGTA 59.378 52.381 5.05 0.00 43.70 2.90
639 640 0.396811 GCCTTATGCCGGATAGGTGT 59.603 55.000 5.05 0.00 43.70 4.16
640 641 3.233355 GCCTTATGCCGGATAGGTG 57.767 57.895 5.05 0.00 43.70 4.00
650 651 1.401905 GCACTGTACAAGGCCTTATGC 59.598 52.381 20.00 12.07 40.16 3.14
651 652 2.991250 AGCACTGTACAAGGCCTTATG 58.009 47.619 20.00 10.74 0.00 1.90
652 653 4.837093 TTAGCACTGTACAAGGCCTTAT 57.163 40.909 20.00 10.37 0.00 1.73
653 654 4.627284 TTTAGCACTGTACAAGGCCTTA 57.373 40.909 20.00 0.00 0.00 2.69
654 655 3.502123 TTTAGCACTGTACAAGGCCTT 57.498 42.857 13.78 13.78 0.00 4.35
655 656 3.347216 CATTTAGCACTGTACAAGGCCT 58.653 45.455 0.00 0.00 0.00 5.19
656 657 2.159379 GCATTTAGCACTGTACAAGGCC 60.159 50.000 13.19 0.00 44.79 5.19
657 658 3.136808 GCATTTAGCACTGTACAAGGC 57.863 47.619 9.74 9.74 44.79 4.35
669 670 7.048512 TCTAAGAACCTTCCTAAGCATTTAGC 58.951 38.462 0.00 0.00 46.19 3.09
670 671 9.449719 TTTCTAAGAACCTTCCTAAGCATTTAG 57.550 33.333 0.00 0.00 36.77 1.85
671 672 9.802039 TTTTCTAAGAACCTTCCTAAGCATTTA 57.198 29.630 0.00 0.00 0.00 1.40
672 673 8.706322 TTTTCTAAGAACCTTCCTAAGCATTT 57.294 30.769 0.00 0.00 0.00 2.32
673 674 7.945109 ACTTTTCTAAGAACCTTCCTAAGCATT 59.055 33.333 0.00 0.00 35.30 3.56
674 675 7.462590 ACTTTTCTAAGAACCTTCCTAAGCAT 58.537 34.615 0.00 0.00 35.30 3.79
675 676 6.838382 ACTTTTCTAAGAACCTTCCTAAGCA 58.162 36.000 0.00 0.00 35.30 3.91
676 677 8.843885 TTACTTTTCTAAGAACCTTCCTAAGC 57.156 34.615 0.00 0.00 35.30 3.09
678 679 9.565090 GGTTTACTTTTCTAAGAACCTTCCTAA 57.435 33.333 0.00 0.00 36.24 2.69
679 680 8.159447 GGGTTTACTTTTCTAAGAACCTTCCTA 58.841 37.037 0.00 0.00 37.91 2.94
680 681 7.002879 GGGTTTACTTTTCTAAGAACCTTCCT 58.997 38.462 0.00 0.00 37.91 3.36
681 682 6.072838 CGGGTTTACTTTTCTAAGAACCTTCC 60.073 42.308 0.00 0.00 37.91 3.46
682 683 6.072838 CCGGGTTTACTTTTCTAAGAACCTTC 60.073 42.308 0.00 0.00 37.91 3.46
683 684 5.766670 CCGGGTTTACTTTTCTAAGAACCTT 59.233 40.000 0.00 0.00 37.91 3.50
684 685 5.072193 TCCGGGTTTACTTTTCTAAGAACCT 59.928 40.000 0.00 0.00 37.91 3.50
685 686 5.308014 TCCGGGTTTACTTTTCTAAGAACC 58.692 41.667 0.00 0.00 37.45 3.62
686 687 7.444629 AATCCGGGTTTACTTTTCTAAGAAC 57.555 36.000 0.00 0.00 35.30 3.01
687 688 8.467963 AAAATCCGGGTTTACTTTTCTAAGAA 57.532 30.769 14.36 0.00 35.30 2.52
688 689 7.940688 AGAAAATCCGGGTTTACTTTTCTAAGA 59.059 33.333 14.36 0.00 41.74 2.10
689 690 8.107399 AGAAAATCCGGGTTTACTTTTCTAAG 57.893 34.615 14.36 0.00 41.74 2.18
690 691 9.571816 TTAGAAAATCCGGGTTTACTTTTCTAA 57.428 29.630 20.13 20.13 46.07 2.10
691 692 9.571816 TTTAGAAAATCCGGGTTTACTTTTCTA 57.428 29.630 14.36 13.23 41.74 2.10
692 693 8.467963 TTTAGAAAATCCGGGTTTACTTTTCT 57.532 30.769 14.36 14.26 44.21 2.52
693 694 8.971321 GTTTTAGAAAATCCGGGTTTACTTTTC 58.029 33.333 14.36 6.92 36.52 2.29
694 695 8.476447 TGTTTTAGAAAATCCGGGTTTACTTTT 58.524 29.630 14.36 0.00 0.00 2.27
695 696 8.009622 TGTTTTAGAAAATCCGGGTTTACTTT 57.990 30.769 14.36 0.00 0.00 2.66
696 697 7.585579 TGTTTTAGAAAATCCGGGTTTACTT 57.414 32.000 14.36 4.72 0.00 2.24
697 698 7.449086 TCATGTTTTAGAAAATCCGGGTTTACT 59.551 33.333 14.36 0.00 0.00 2.24
698 699 7.595604 TCATGTTTTAGAAAATCCGGGTTTAC 58.404 34.615 14.36 7.35 0.00 2.01
699 700 7.449086 ACTCATGTTTTAGAAAATCCGGGTTTA 59.551 33.333 14.36 0.00 0.00 2.01
700 701 6.266786 ACTCATGTTTTAGAAAATCCGGGTTT 59.733 34.615 6.94 6.94 0.00 3.27
701 702 5.773176 ACTCATGTTTTAGAAAATCCGGGTT 59.227 36.000 0.00 0.00 0.00 4.11
702 703 5.183140 CACTCATGTTTTAGAAAATCCGGGT 59.817 40.000 0.00 0.00 0.00 5.28
703 704 5.640732 CACTCATGTTTTAGAAAATCCGGG 58.359 41.667 0.00 0.00 0.00 5.73
704 705 5.095490 GCACTCATGTTTTAGAAAATCCGG 58.905 41.667 0.00 0.00 0.00 5.14
705 706 5.942872 AGCACTCATGTTTTAGAAAATCCG 58.057 37.500 0.00 0.00 0.00 4.18
706 707 9.860898 AATAAGCACTCATGTTTTAGAAAATCC 57.139 29.630 0.00 0.00 30.98 3.01
712 713 9.719355 TGTAGAAATAAGCACTCATGTTTTAGA 57.281 29.630 0.00 0.00 30.98 2.10
716 717 9.683069 CTTTTGTAGAAATAAGCACTCATGTTT 57.317 29.630 0.00 0.00 33.34 2.83
717 718 9.066892 TCTTTTGTAGAAATAAGCACTCATGTT 57.933 29.630 0.00 0.00 0.00 2.71
718 719 8.621532 TCTTTTGTAGAAATAAGCACTCATGT 57.378 30.769 0.00 0.00 0.00 3.21
719 720 8.939929 TCTCTTTTGTAGAAATAAGCACTCATG 58.060 33.333 0.00 0.00 30.91 3.07
720 721 8.940952 GTCTCTTTTGTAGAAATAAGCACTCAT 58.059 33.333 0.00 0.00 30.91 2.90
721 722 7.116376 CGTCTCTTTTGTAGAAATAAGCACTCA 59.884 37.037 0.00 0.00 30.91 3.41
722 723 7.116519 ACGTCTCTTTTGTAGAAATAAGCACTC 59.883 37.037 0.00 0.00 30.91 3.51
723 724 6.929606 ACGTCTCTTTTGTAGAAATAAGCACT 59.070 34.615 0.00 0.00 30.91 4.40
724 725 7.116519 AGACGTCTCTTTTGTAGAAATAAGCAC 59.883 37.037 13.58 0.00 30.91 4.40
725 726 7.152645 AGACGTCTCTTTTGTAGAAATAAGCA 58.847 34.615 13.58 0.00 30.91 3.91
726 727 7.583860 AGACGTCTCTTTTGTAGAAATAAGC 57.416 36.000 13.58 0.00 30.91 3.09
733 734 9.121517 CGTTTAATTAGACGTCTCTTTTGTAGA 57.878 33.333 23.89 0.00 34.75 2.59
746 747 9.096600 CGGTACTTATAGACGTTTAATTAGACG 57.903 37.037 22.72 22.72 44.34 4.18
747 748 9.387123 CCGGTACTTATAGACGTTTAATTAGAC 57.613 37.037 0.00 0.00 0.00 2.59
748 749 9.120538 ACCGGTACTTATAGACGTTTAATTAGA 57.879 33.333 4.49 0.00 0.00 2.10
749 750 9.173939 CACCGGTACTTATAGACGTTTAATTAG 57.826 37.037 6.87 0.00 0.00 1.73
750 751 8.682710 ACACCGGTACTTATAGACGTTTAATTA 58.317 33.333 6.87 0.00 0.00 1.40
751 752 7.547227 ACACCGGTACTTATAGACGTTTAATT 58.453 34.615 6.87 0.00 0.00 1.40
752 753 7.100458 ACACCGGTACTTATAGACGTTTAAT 57.900 36.000 6.87 0.00 0.00 1.40
753 754 6.509418 ACACCGGTACTTATAGACGTTTAA 57.491 37.500 6.87 0.00 0.00 1.52
754 755 6.509418 AACACCGGTACTTATAGACGTTTA 57.491 37.500 6.87 0.00 0.00 2.01
755 756 5.391312 AACACCGGTACTTATAGACGTTT 57.609 39.130 6.87 0.00 0.00 3.60
756 757 5.391312 AAACACCGGTACTTATAGACGTT 57.609 39.130 6.87 0.00 0.00 3.99
757 758 6.509418 TTAAACACCGGTACTTATAGACGT 57.491 37.500 6.87 0.00 0.00 4.34
758 759 7.810766 TTTTAAACACCGGTACTTATAGACG 57.189 36.000 6.87 0.00 0.00 4.18
786 787 6.305272 AGGTGCTTAGAGAAATGAATCAGA 57.695 37.500 0.00 0.00 0.00 3.27
803 804 3.157087 CAACATGTTTAGGGAAGGTGCT 58.843 45.455 8.77 0.00 0.00 4.40
804 805 2.352715 GCAACATGTTTAGGGAAGGTGC 60.353 50.000 8.77 1.94 0.00 5.01
806 807 3.237268 TGCAACATGTTTAGGGAAGGT 57.763 42.857 8.77 0.00 0.00 3.50
807 808 3.181497 CGATGCAACATGTTTAGGGAAGG 60.181 47.826 8.77 0.00 0.00 3.46
809 810 3.417101 ACGATGCAACATGTTTAGGGAA 58.583 40.909 8.77 0.00 0.00 3.97
810 811 3.066291 ACGATGCAACATGTTTAGGGA 57.934 42.857 8.77 0.00 0.00 4.20
828 829 3.160545 CAATGCGTTTAGGCTTTGTACG 58.839 45.455 12.25 0.00 40.91 3.67
829 830 2.914838 GCAATGCGTTTAGGCTTTGTAC 59.085 45.455 18.15 0.00 44.98 2.90
835 836 1.883021 GGTGCAATGCGTTTAGGCT 59.117 52.632 0.00 0.00 0.00 4.58
837 838 0.096976 CTCGGTGCAATGCGTTTAGG 59.903 55.000 0.00 0.00 0.00 2.69
912 918 0.874607 GGAATCGACGGTCCCAATCG 60.875 60.000 1.91 1.54 37.20 3.34
991 997 4.209866 GGCCGCCATGGGAGGAAT 62.210 66.667 15.13 0.00 45.77 3.01
1008 1014 4.574013 GGTAGAATCAGAGCTGTGATTTGG 59.426 45.833 32.49 0.00 45.32 3.28
1022 1028 2.119495 GAGGAAGCAGGGGTAGAATCA 58.881 52.381 0.00 0.00 0.00 2.57
1335 1341 0.175989 CGAAGGAGTACTTGAGGGCC 59.824 60.000 0.00 0.00 40.21 5.80
1451 1465 9.249457 GCTAAAATAATTAGGAAATGTTCTGCC 57.751 33.333 0.00 0.00 0.00 4.85
1503 1520 2.322081 CCGGTGGGCTAAACACACG 61.322 63.158 0.00 0.00 40.54 4.49
1537 1554 0.098728 CCACAACGGCGAATGGAATC 59.901 55.000 16.62 0.00 33.80 2.52
1595 1612 7.230913 TCCTTAGTCCTTGCTGAGTATACATAC 59.769 40.741 5.50 0.00 0.00 2.39
1624 1641 4.946784 AGCGAGTTCACATTTCATAACC 57.053 40.909 0.00 0.00 0.00 2.85
1628 1645 4.997395 ACTGTTAGCGAGTTCACATTTCAT 59.003 37.500 0.00 0.00 0.00 2.57
1646 1663 8.947055 ATCAAGCAAAATTGAACTAAACTGTT 57.053 26.923 0.00 0.00 42.21 3.16
1765 1783 6.713450 TCAATTGGTCCACTAGTAGGAAAAAC 59.287 38.462 13.53 4.71 36.80 2.43
1803 1821 4.227512 TGACTGTGTGAATGATGCAAAC 57.772 40.909 0.00 0.00 0.00 2.93
1899 1917 3.848272 AAACGTTCGATTTGCCATGAT 57.152 38.095 0.00 0.00 0.00 2.45
1929 1949 2.380084 TGTCCTCGCATCACTAAACC 57.620 50.000 0.00 0.00 0.00 3.27
1939 1959 3.188159 ACTAAAGTTGTTGTCCTCGCA 57.812 42.857 0.00 0.00 0.00 5.10
2022 2042 3.435327 GTGACGCATGGATGACAAGTTAA 59.565 43.478 0.00 0.00 0.00 2.01
2106 2126 7.724506 TGCCCCCATAATATGTTTACGAAAATA 59.275 33.333 0.00 0.00 0.00 1.40
2111 2131 4.141459 TGTGCCCCCATAATATGTTTACGA 60.141 41.667 0.00 0.00 0.00 3.43
2113 2133 4.890581 TGTGTGCCCCCATAATATGTTTAC 59.109 41.667 0.00 0.00 0.00 2.01
2124 2144 1.074926 TTTTGGTGTGTGCCCCCAT 60.075 52.632 0.00 0.00 0.00 4.00
2128 2148 2.514803 ACTATCTTTTGGTGTGTGCCC 58.485 47.619 0.00 0.00 0.00 5.36
2145 2165 6.199937 GTTCATGAACTACCCTCGTTACTA 57.800 41.667 27.66 0.00 38.25 1.82
2190 2210 9.859427 ATATTCAACACATCAAATTACCAACAG 57.141 29.630 0.00 0.00 0.00 3.16
2200 2220 5.598005 GGATCCCCATATTCAACACATCAAA 59.402 40.000 0.00 0.00 0.00 2.69
2347 2368 0.761802 CCCTGAGGCCATCTCTTACC 59.238 60.000 5.01 0.00 42.86 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.