Multiple sequence alignment - TraesCS5D01G493200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G493200 chr5D 100.000 4225 0 0 954 5178 525986106 525981882 0.000000e+00 7803.0
1 TraesCS5D01G493200 chr5D 100.000 610 0 0 1 610 525987059 525986450 0.000000e+00 1127.0
2 TraesCS5D01G493200 chr5A 90.559 3379 144 67 999 4258 653002339 652999017 0.000000e+00 4311.0
3 TraesCS5D01G493200 chr5A 85.592 819 50 28 4256 5047 652998985 652998208 0.000000e+00 797.0
4 TraesCS5D01G493200 chr5A 83.592 451 38 24 186 610 653002810 653002370 1.750000e-104 390.0
5 TraesCS5D01G493200 chr5B 93.692 2568 77 30 999 3534 660670509 660667995 0.000000e+00 3766.0
6 TraesCS5D01G493200 chr5B 91.866 627 18 11 3659 4253 660667962 660667337 0.000000e+00 845.0
7 TraesCS5D01G493200 chr5B 81.840 424 28 26 186 571 660671211 660670799 1.400000e-80 311.0
8 TraesCS5D01G493200 chr5B 84.444 270 10 16 4662 4911 660667116 660666859 2.410000e-58 237.0
9 TraesCS5D01G493200 chr5B 87.429 175 11 4 5015 5178 660666542 660666368 1.900000e-44 191.0
10 TraesCS5D01G493200 chr5B 87.356 174 9 6 4256 4428 660667286 660667125 2.460000e-43 187.0
11 TraesCS5D01G493200 chr5B 90.244 82 4 1 5101 5178 660664822 660664741 2.550000e-18 104.0
12 TraesCS5D01G493200 chr5B 94.340 53 2 1 4984 5036 660665674 660665623 4.300000e-11 80.5
13 TraesCS5D01G493200 chr3B 84.965 286 39 2 1467 1752 718349836 718350117 2.360000e-73 287.0
14 TraesCS5D01G493200 chr3A 92.265 181 13 1 1716 1895 720625663 720625483 6.650000e-64 255.0
15 TraesCS5D01G493200 chr3A 79.121 182 14 11 991 1169 720625983 720625823 2.550000e-18 104.0
16 TraesCS5D01G493200 chr1D 89.937 159 16 0 1722 1880 15338649 15338807 6.800000e-49 206.0
17 TraesCS5D01G493200 chr1A 89.937 159 16 0 1722 1880 16426116 16426274 6.800000e-49 206.0
18 TraesCS5D01G493200 chr1B 88.050 159 19 0 1722 1880 22048032 22047874 6.840000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G493200 chr5D 525981882 525987059 5177 True 4465.000000 7803 100.000000 1 5178 2 chr5D.!!$R1 5177
1 TraesCS5D01G493200 chr5A 652998208 653002810 4602 True 1832.666667 4311 86.581000 186 5047 3 chr5A.!!$R1 4861
2 TraesCS5D01G493200 chr5B 660664741 660671211 6470 True 715.187500 3766 88.901375 186 5178 8 chr5B.!!$R1 4992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.039527 GTTTCCATGGCCGTGTTCAC 60.040 55.000 23.39 12.26 0.00 3.18 F
138 139 0.104304 TAAAGCCTTCCCGAGCGATC 59.896 55.000 0.00 0.00 0.00 3.69 F
146 147 0.179084 TCCCGAGCGATCAAATCACC 60.179 55.000 0.00 0.00 0.00 4.02 F
168 169 0.247460 TCACTGGCTGGTGATCTTCG 59.753 55.000 9.16 0.00 40.72 3.79 F
988 1057 0.764752 CTCCCTACCCCTCCACCATC 60.765 65.000 0.00 0.00 0.00 3.51 F
2202 2277 2.009108 CATCGCCGACAAGATGGTG 58.991 57.895 0.00 0.00 40.23 4.17 F
3006 3140 1.880027 CAAACCTCTTTTGGACGGGAG 59.120 52.381 0.00 0.00 40.98 4.30 F
3542 3714 1.066645 TGATGCGCACTCACTCATTCT 60.067 47.619 14.90 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1119 1194 2.650116 GCAGAAGGAGTGGCCGAGA 61.650 63.158 0.00 0.0 43.43 4.04 R
2121 2196 1.737735 CTTGAGCACGGCGATGTGA 60.738 57.895 16.62 0.0 42.55 3.58 R
2431 2506 1.960417 TCATGTTTGGTGTGAGCGAA 58.040 45.000 0.00 0.0 0.00 4.70 R
2433 2508 2.725759 CGAATCATGTTTGGTGTGAGCG 60.726 50.000 0.00 0.0 0.00 5.03 R
2494 2575 2.874086 TGCATTGATCGGCACAGATAAG 59.126 45.455 2.77 0.0 34.58 1.73 R
3536 3708 0.457443 ACGCAGCTCGATGAGAATGA 59.543 50.000 11.64 0.0 41.67 2.57 R
3928 4137 0.533308 TCGCCGTACCTGCTTTGTTT 60.533 50.000 1.12 0.0 0.00 2.83 R
5081 6533 0.841289 ACCGTTCCTCCTGAAAACCA 59.159 50.000 0.00 0.0 33.94 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.672251 CTCCAAGGGAGCCATTGG 57.328 61.111 23.27 23.27 43.29 3.16
28 29 1.693640 CTCCAAGGGAGCCATTGGT 59.306 57.895 26.61 0.00 43.29 3.67
29 30 0.040204 CTCCAAGGGAGCCATTGGTT 59.960 55.000 26.61 0.00 43.29 3.67
30 31 0.486879 TCCAAGGGAGCCATTGGTTT 59.513 50.000 26.61 0.00 45.16 3.27
31 32 0.897621 CCAAGGGAGCCATTGGTTTC 59.102 55.000 21.52 0.00 40.93 2.78
32 33 0.897621 CAAGGGAGCCATTGGTTTCC 59.102 55.000 8.83 8.83 0.00 3.13
33 34 0.486879 AAGGGAGCCATTGGTTTCCA 59.513 50.000 18.37 0.00 32.72 3.53
34 35 0.712380 AGGGAGCCATTGGTTTCCAT 59.288 50.000 18.37 13.29 32.72 3.41
35 36 0.826062 GGGAGCCATTGGTTTCCATG 59.174 55.000 22.11 0.00 32.72 3.66
36 37 0.826062 GGAGCCATTGGTTTCCATGG 59.174 55.000 18.16 4.97 36.21 3.66
37 38 4.939399 GCCATTGGTTTCCATGGC 57.061 55.556 6.96 18.55 44.31 4.40
38 39 1.221566 GCCATTGGTTTCCATGGCC 59.778 57.895 20.71 2.99 44.55 5.36
39 40 1.516892 CCATTGGTTTCCATGGCCG 59.483 57.895 6.96 0.00 31.53 6.13
40 41 1.257055 CCATTGGTTTCCATGGCCGT 61.257 55.000 6.96 0.00 31.53 5.68
41 42 0.108709 CATTGGTTTCCATGGCCGTG 60.109 55.000 18.73 18.73 31.53 4.94
42 43 0.541764 ATTGGTTTCCATGGCCGTGT 60.542 50.000 23.39 0.00 31.53 4.49
43 44 0.757188 TTGGTTTCCATGGCCGTGTT 60.757 50.000 23.39 0.00 31.53 3.32
44 45 1.175983 TGGTTTCCATGGCCGTGTTC 61.176 55.000 23.39 10.15 0.00 3.18
45 46 1.175983 GGTTTCCATGGCCGTGTTCA 61.176 55.000 23.39 4.32 0.00 3.18
46 47 0.039527 GTTTCCATGGCCGTGTTCAC 60.040 55.000 23.39 12.26 0.00 3.18
47 48 1.511318 TTTCCATGGCCGTGTTCACG 61.511 55.000 23.39 16.87 0.00 4.35
48 49 2.358125 CCATGGCCGTGTTCACGA 60.358 61.111 23.39 7.22 34.64 4.35
49 50 2.677003 CCATGGCCGTGTTCACGAC 61.677 63.158 23.39 14.15 34.64 4.34
50 51 2.736995 ATGGCCGTGTTCACGACG 60.737 61.111 23.84 11.13 36.56 5.12
51 52 3.215597 ATGGCCGTGTTCACGACGA 62.216 57.895 23.84 12.18 39.21 4.20
52 53 3.103911 GGCCGTGTTCACGACGAG 61.104 66.667 23.84 10.17 39.21 4.18
53 54 2.354305 GCCGTGTTCACGACGAGT 60.354 61.111 23.84 0.00 39.21 4.18
54 55 1.947642 GCCGTGTTCACGACGAGTT 60.948 57.895 23.84 0.00 39.21 3.01
55 56 1.844003 CCGTGTTCACGACGAGTTG 59.156 57.895 23.84 4.38 39.21 3.16
56 57 0.593008 CCGTGTTCACGACGAGTTGA 60.593 55.000 23.84 0.00 39.21 3.18
57 58 1.405461 CGTGTTCACGACGAGTTGAT 58.595 50.000 18.64 0.00 39.21 2.57
58 59 1.382419 CGTGTTCACGACGAGTTGATC 59.618 52.381 18.64 0.00 39.21 2.92
68 69 0.721718 CGAGTTGATCGTCTTTGCCC 59.278 55.000 0.00 0.00 46.62 5.36
69 70 1.808411 GAGTTGATCGTCTTTGCCCA 58.192 50.000 0.00 0.00 0.00 5.36
70 71 2.359900 GAGTTGATCGTCTTTGCCCAT 58.640 47.619 0.00 0.00 0.00 4.00
71 72 2.352960 GAGTTGATCGTCTTTGCCCATC 59.647 50.000 0.00 0.00 0.00 3.51
72 73 2.083774 GTTGATCGTCTTTGCCCATCA 58.916 47.619 0.00 0.00 0.00 3.07
73 74 2.684881 GTTGATCGTCTTTGCCCATCAT 59.315 45.455 0.00 0.00 0.00 2.45
74 75 2.564771 TGATCGTCTTTGCCCATCATC 58.435 47.619 0.00 0.00 0.00 2.92
75 76 1.876156 GATCGTCTTTGCCCATCATCC 59.124 52.381 0.00 0.00 0.00 3.51
76 77 0.461870 TCGTCTTTGCCCATCATCCG 60.462 55.000 0.00 0.00 0.00 4.18
77 78 1.729881 GTCTTTGCCCATCATCCGC 59.270 57.895 0.00 0.00 0.00 5.54
78 79 1.031571 GTCTTTGCCCATCATCCGCA 61.032 55.000 0.00 0.00 0.00 5.69
79 80 1.031571 TCTTTGCCCATCATCCGCAC 61.032 55.000 0.00 0.00 30.84 5.34
80 81 2.327002 CTTTGCCCATCATCCGCACG 62.327 60.000 0.00 0.00 30.84 5.34
81 82 2.811542 TTTGCCCATCATCCGCACGA 62.812 55.000 0.00 0.00 30.84 4.35
82 83 2.969238 GCCCATCATCCGCACGAG 60.969 66.667 0.00 0.00 0.00 4.18
83 84 2.501128 CCCATCATCCGCACGAGT 59.499 61.111 0.00 0.00 0.00 4.18
84 85 1.153369 CCCATCATCCGCACGAGTT 60.153 57.895 0.00 0.00 0.00 3.01
85 86 0.744414 CCCATCATCCGCACGAGTTT 60.744 55.000 0.00 0.00 0.00 2.66
86 87 1.086696 CCATCATCCGCACGAGTTTT 58.913 50.000 0.00 0.00 0.00 2.43
87 88 1.062587 CCATCATCCGCACGAGTTTTC 59.937 52.381 0.00 0.00 0.00 2.29
88 89 2.002586 CATCATCCGCACGAGTTTTCT 58.997 47.619 0.00 0.00 0.00 2.52
89 90 1.710013 TCATCCGCACGAGTTTTCTC 58.290 50.000 0.00 0.00 43.01 2.87
90 91 0.721718 CATCCGCACGAGTTTTCTCC 59.278 55.000 0.00 0.00 43.49 3.71
91 92 0.608640 ATCCGCACGAGTTTTCTCCT 59.391 50.000 0.00 0.00 43.49 3.69
92 93 0.391597 TCCGCACGAGTTTTCTCCTT 59.608 50.000 0.00 0.00 43.49 3.36
93 94 0.512952 CCGCACGAGTTTTCTCCTTG 59.487 55.000 0.00 0.00 43.49 3.61
94 95 1.497991 CGCACGAGTTTTCTCCTTGA 58.502 50.000 0.00 0.00 43.49 3.02
95 96 1.192534 CGCACGAGTTTTCTCCTTGAC 59.807 52.381 0.00 0.00 43.49 3.18
96 97 1.192534 GCACGAGTTTTCTCCTTGACG 59.807 52.381 0.00 0.00 43.49 4.35
97 98 2.470821 CACGAGTTTTCTCCTTGACGT 58.529 47.619 0.00 0.00 43.49 4.34
98 99 2.471743 CACGAGTTTTCTCCTTGACGTC 59.528 50.000 9.11 9.11 43.49 4.34
99 100 2.059541 CGAGTTTTCTCCTTGACGTCC 58.940 52.381 14.12 0.00 43.49 4.79
100 101 2.288273 CGAGTTTTCTCCTTGACGTCCT 60.288 50.000 14.12 0.00 43.49 3.85
101 102 3.057736 CGAGTTTTCTCCTTGACGTCCTA 60.058 47.826 14.12 0.00 43.49 2.94
102 103 4.487019 GAGTTTTCTCCTTGACGTCCTAG 58.513 47.826 14.12 10.30 40.79 3.02
103 104 4.150359 AGTTTTCTCCTTGACGTCCTAGA 58.850 43.478 14.12 7.56 0.00 2.43
104 105 4.587684 AGTTTTCTCCTTGACGTCCTAGAA 59.412 41.667 14.12 12.96 0.00 2.10
105 106 5.246429 AGTTTTCTCCTTGACGTCCTAGAAT 59.754 40.000 14.12 0.06 0.00 2.40
106 107 4.720649 TTCTCCTTGACGTCCTAGAATG 57.279 45.455 14.12 0.00 0.00 2.67
107 108 3.964411 TCTCCTTGACGTCCTAGAATGA 58.036 45.455 14.12 2.38 0.00 2.57
108 109 4.341487 TCTCCTTGACGTCCTAGAATGAA 58.659 43.478 14.12 0.00 0.00 2.57
109 110 4.158025 TCTCCTTGACGTCCTAGAATGAAC 59.842 45.833 14.12 0.00 0.00 3.18
110 111 4.087182 TCCTTGACGTCCTAGAATGAACT 58.913 43.478 14.12 0.00 0.00 3.01
111 112 4.082190 TCCTTGACGTCCTAGAATGAACTG 60.082 45.833 14.12 0.00 0.00 3.16
112 113 4.322049 CCTTGACGTCCTAGAATGAACTGT 60.322 45.833 14.12 0.00 0.00 3.55
113 114 5.105877 CCTTGACGTCCTAGAATGAACTGTA 60.106 44.000 14.12 0.00 0.00 2.74
114 115 5.562506 TGACGTCCTAGAATGAACTGTAG 57.437 43.478 14.12 0.00 0.00 2.74
115 116 5.008331 TGACGTCCTAGAATGAACTGTAGT 58.992 41.667 14.12 0.00 0.00 2.73
116 117 5.106277 TGACGTCCTAGAATGAACTGTAGTG 60.106 44.000 14.12 0.00 0.00 2.74
117 118 4.158025 ACGTCCTAGAATGAACTGTAGTGG 59.842 45.833 0.00 0.00 0.00 4.00
118 119 4.440250 CGTCCTAGAATGAACTGTAGTGGG 60.440 50.000 0.00 0.00 0.00 4.61
119 120 4.466726 GTCCTAGAATGAACTGTAGTGGGT 59.533 45.833 0.00 0.00 0.00 4.51
120 121 5.655532 GTCCTAGAATGAACTGTAGTGGGTA 59.344 44.000 0.00 0.00 0.00 3.69
121 122 6.154021 GTCCTAGAATGAACTGTAGTGGGTAA 59.846 42.308 0.00 0.00 0.00 2.85
122 123 6.727231 TCCTAGAATGAACTGTAGTGGGTAAA 59.273 38.462 0.00 0.00 0.00 2.01
123 124 7.042335 CCTAGAATGAACTGTAGTGGGTAAAG 58.958 42.308 0.00 0.00 0.00 1.85
124 125 5.246307 AGAATGAACTGTAGTGGGTAAAGC 58.754 41.667 0.00 0.00 0.00 3.51
125 126 3.412237 TGAACTGTAGTGGGTAAAGCC 57.588 47.619 0.00 0.00 0.00 4.35
126 127 2.976882 TGAACTGTAGTGGGTAAAGCCT 59.023 45.455 0.00 0.00 37.43 4.58
127 128 3.393278 TGAACTGTAGTGGGTAAAGCCTT 59.607 43.478 0.00 0.00 37.43 4.35
128 129 3.697619 ACTGTAGTGGGTAAAGCCTTC 57.302 47.619 0.00 0.00 37.43 3.46
129 130 2.305052 ACTGTAGTGGGTAAAGCCTTCC 59.695 50.000 0.00 0.00 37.43 3.46
130 131 1.631898 TGTAGTGGGTAAAGCCTTCCC 59.368 52.381 0.00 0.00 41.41 3.97
131 132 0.906775 TAGTGGGTAAAGCCTTCCCG 59.093 55.000 0.00 0.00 43.75 5.14
132 133 0.838987 AGTGGGTAAAGCCTTCCCGA 60.839 55.000 0.00 0.00 43.75 5.14
133 134 0.392595 GTGGGTAAAGCCTTCCCGAG 60.393 60.000 0.00 0.00 43.75 4.63
134 135 1.451567 GGGTAAAGCCTTCCCGAGC 60.452 63.158 0.00 0.00 37.43 5.03
135 136 1.814169 GGTAAAGCCTTCCCGAGCG 60.814 63.158 0.00 0.00 0.00 5.03
136 137 1.217244 GTAAAGCCTTCCCGAGCGA 59.783 57.895 0.00 0.00 0.00 4.93
137 138 0.179081 GTAAAGCCTTCCCGAGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
138 139 0.104304 TAAAGCCTTCCCGAGCGATC 59.896 55.000 0.00 0.00 0.00 3.69
139 140 1.899437 AAAGCCTTCCCGAGCGATCA 61.899 55.000 0.00 0.00 0.00 2.92
140 141 1.899437 AAGCCTTCCCGAGCGATCAA 61.899 55.000 0.00 0.00 0.00 2.57
141 142 1.449601 GCCTTCCCGAGCGATCAAA 60.450 57.895 0.00 0.00 0.00 2.69
142 143 0.815615 GCCTTCCCGAGCGATCAAAT 60.816 55.000 0.00 0.00 0.00 2.32
143 144 1.221414 CCTTCCCGAGCGATCAAATC 58.779 55.000 0.00 0.00 0.00 2.17
144 145 1.473257 CCTTCCCGAGCGATCAAATCA 60.473 52.381 0.00 0.00 0.00 2.57
145 146 1.594862 CTTCCCGAGCGATCAAATCAC 59.405 52.381 0.00 0.00 0.00 3.06
146 147 0.179084 TCCCGAGCGATCAAATCACC 60.179 55.000 0.00 0.00 0.00 4.02
147 148 0.461870 CCCGAGCGATCAAATCACCA 60.462 55.000 0.00 0.00 0.00 4.17
148 149 1.586422 CCGAGCGATCAAATCACCAT 58.414 50.000 0.00 0.00 0.00 3.55
149 150 1.942657 CCGAGCGATCAAATCACCATT 59.057 47.619 0.00 0.00 0.00 3.16
150 151 2.032549 CCGAGCGATCAAATCACCATTC 60.033 50.000 0.00 0.00 0.00 2.67
151 152 2.609002 CGAGCGATCAAATCACCATTCA 59.391 45.455 0.00 0.00 0.00 2.57
152 153 3.544834 CGAGCGATCAAATCACCATTCAC 60.545 47.826 0.00 0.00 0.00 3.18
153 154 3.614092 AGCGATCAAATCACCATTCACT 58.386 40.909 0.00 0.00 0.00 3.41
154 155 3.376234 AGCGATCAAATCACCATTCACTG 59.624 43.478 0.00 0.00 0.00 3.66
163 164 3.583054 CCATTCACTGGCTGGTGAT 57.417 52.632 12.84 3.71 44.30 3.06
164 165 1.386533 CCATTCACTGGCTGGTGATC 58.613 55.000 12.84 0.00 44.30 2.92
165 166 1.064906 CCATTCACTGGCTGGTGATCT 60.065 52.381 12.84 3.87 44.30 2.75
166 167 2.619849 CCATTCACTGGCTGGTGATCTT 60.620 50.000 12.84 2.10 44.30 2.40
167 168 2.479566 TTCACTGGCTGGTGATCTTC 57.520 50.000 12.84 0.00 44.30 2.87
168 169 0.247460 TCACTGGCTGGTGATCTTCG 59.753 55.000 9.16 0.00 40.72 3.79
169 170 0.247460 CACTGGCTGGTGATCTTCGA 59.753 55.000 5.50 0.00 39.34 3.71
170 171 1.134580 CACTGGCTGGTGATCTTCGAT 60.135 52.381 5.50 0.00 39.34 3.59
171 172 2.101415 CACTGGCTGGTGATCTTCGATA 59.899 50.000 5.50 0.00 39.34 2.92
172 173 2.968574 ACTGGCTGGTGATCTTCGATAT 59.031 45.455 0.00 0.00 0.00 1.63
173 174 3.244009 ACTGGCTGGTGATCTTCGATATG 60.244 47.826 0.00 0.00 0.00 1.78
174 175 2.037641 TGGCTGGTGATCTTCGATATGG 59.962 50.000 0.00 0.00 0.00 2.74
175 176 2.300152 GGCTGGTGATCTTCGATATGGA 59.700 50.000 0.00 0.00 0.00 3.41
176 177 3.244215 GGCTGGTGATCTTCGATATGGAA 60.244 47.826 0.00 0.00 0.00 3.53
177 178 3.993081 GCTGGTGATCTTCGATATGGAAG 59.007 47.826 18.55 18.55 43.78 3.46
178 179 3.993081 CTGGTGATCTTCGATATGGAAGC 59.007 47.826 19.52 9.54 42.48 3.86
179 180 3.643320 TGGTGATCTTCGATATGGAAGCT 59.357 43.478 19.52 12.15 42.48 3.74
180 181 4.832823 TGGTGATCTTCGATATGGAAGCTA 59.167 41.667 19.52 6.91 42.48 3.32
181 182 5.481824 TGGTGATCTTCGATATGGAAGCTAT 59.518 40.000 19.52 10.87 42.48 2.97
182 183 5.809562 GGTGATCTTCGATATGGAAGCTATG 59.190 44.000 19.52 0.85 42.48 2.23
183 184 5.809562 GTGATCTTCGATATGGAAGCTATGG 59.190 44.000 19.52 0.21 42.48 2.74
184 185 4.808414 TCTTCGATATGGAAGCTATGGG 57.192 45.455 19.52 0.00 42.48 4.00
205 206 2.368875 GTGTTACGGATGGATGGGAGAT 59.631 50.000 0.00 0.00 0.00 2.75
206 207 3.576982 GTGTTACGGATGGATGGGAGATA 59.423 47.826 0.00 0.00 0.00 1.98
336 364 2.040544 CAGACGGGCGCTGGATTTT 61.041 57.895 7.64 0.00 0.00 1.82
353 381 6.938507 TGGATTTTATCTTTTCTGCATGCTT 58.061 32.000 20.33 0.00 0.00 3.91
382 410 2.030562 AGGTTTCCGCACTCACCG 59.969 61.111 0.00 0.00 34.19 4.94
406 434 2.421739 GGAGTCACACGCACCACT 59.578 61.111 0.00 0.00 0.00 4.00
407 435 1.227556 GGAGTCACACGCACCACTT 60.228 57.895 0.00 0.00 0.00 3.16
430 458 1.078710 AGGAGTCAACGGCTAGGGT 59.921 57.895 0.00 0.00 0.00 4.34
432 460 1.255667 GGAGTCAACGGCTAGGGTGA 61.256 60.000 0.00 0.00 0.00 4.02
466 499 2.597510 AACGGAAGCCAAGCCACC 60.598 61.111 0.00 0.00 0.00 4.61
467 500 3.429372 AACGGAAGCCAAGCCACCA 62.429 57.895 0.00 0.00 0.00 4.17
534 592 4.525028 ACCCCACACCCACTCCCA 62.525 66.667 0.00 0.00 0.00 4.37
570 639 2.364448 AACTCTCCCCTCCGCTCC 60.364 66.667 0.00 0.00 0.00 4.70
598 667 0.999712 CATTATAATCCCCCGCCCCT 59.000 55.000 0.00 0.00 0.00 4.79
975 1044 4.517934 CGCCGGTCCTCCTCCCTA 62.518 72.222 1.90 0.00 0.00 3.53
976 1045 2.838693 GCCGGTCCTCCTCCCTAC 60.839 72.222 1.90 0.00 0.00 3.18
977 1046 2.123382 CCGGTCCTCCTCCCTACC 60.123 72.222 0.00 0.00 0.00 3.18
978 1047 2.123382 CGGTCCTCCTCCCTACCC 60.123 72.222 0.00 0.00 0.00 3.69
979 1048 2.286213 GGTCCTCCTCCCTACCCC 59.714 72.222 0.00 0.00 0.00 4.95
980 1049 2.334279 GGTCCTCCTCCCTACCCCT 61.334 68.421 0.00 0.00 0.00 4.79
981 1050 1.233659 GTCCTCCTCCCTACCCCTC 59.766 68.421 0.00 0.00 0.00 4.30
982 1051 2.019272 TCCTCCTCCCTACCCCTCC 61.019 68.421 0.00 0.00 0.00 4.30
983 1052 2.333462 CCTCCTCCCTACCCCTCCA 61.333 68.421 0.00 0.00 0.00 3.86
984 1053 1.075151 CTCCTCCCTACCCCTCCAC 60.075 68.421 0.00 0.00 0.00 4.02
985 1054 2.040779 CCTCCCTACCCCTCCACC 60.041 72.222 0.00 0.00 0.00 4.61
986 1055 2.784984 CTCCCTACCCCTCCACCA 59.215 66.667 0.00 0.00 0.00 4.17
987 1056 1.318380 CTCCCTACCCCTCCACCAT 59.682 63.158 0.00 0.00 0.00 3.55
988 1057 0.764752 CTCCCTACCCCTCCACCATC 60.765 65.000 0.00 0.00 0.00 3.51
989 1058 2.140792 CCCTACCCCTCCACCATCG 61.141 68.421 0.00 0.00 0.00 3.84
990 1059 2.808206 CCTACCCCTCCACCATCGC 61.808 68.421 0.00 0.00 0.00 4.58
991 1060 3.151710 TACCCCTCCACCATCGCG 61.152 66.667 0.00 0.00 0.00 5.87
1719 1794 4.506255 GGCGGGGACTCCAATGGG 62.506 72.222 0.00 0.00 34.36 4.00
1720 1795 3.728373 GCGGGGACTCCAATGGGT 61.728 66.667 0.00 0.00 34.36 4.51
2202 2277 2.009108 CATCGCCGACAAGATGGTG 58.991 57.895 0.00 0.00 40.23 4.17
2443 2518 3.438781 GGTGATTTAATTCGCTCACACCA 59.561 43.478 0.00 0.00 43.75 4.17
2481 2556 6.197842 GCTTGAAAATTGAGTGTCTGTTCTTG 59.802 38.462 0.00 0.00 0.00 3.02
2494 2575 2.681848 CTGTTCTTGGTCTGATGATGGC 59.318 50.000 0.00 0.00 0.00 4.40
2677 2758 5.676310 CAGTTTTTGGCATAAAAAGTTTGCG 59.324 36.000 12.92 2.98 37.25 4.85
2813 2925 7.035612 GTGTCCCAAGTAATTCAATGAAATCC 58.964 38.462 0.00 0.00 0.00 3.01
2831 2943 3.116079 TCCCTTACTTGAAACGGACAC 57.884 47.619 0.00 0.00 0.00 3.67
2843 2955 3.746108 CGGACACGTCAAATGTTGG 57.254 52.632 0.00 0.00 34.81 3.77
2858 2970 6.930164 TCAAATGTTGGGAAATCACAAAGATG 59.070 34.615 0.00 0.00 41.48 2.90
2913 3027 7.717436 TGGTCAACACATAACTTAAAGTCATGA 59.283 33.333 0.00 0.00 0.00 3.07
3006 3140 1.880027 CAAACCTCTTTTGGACGGGAG 59.120 52.381 0.00 0.00 40.98 4.30
3092 3226 5.060940 GCGGAATTTTTCAAAGCATGACTAC 59.939 40.000 0.00 0.00 37.92 2.73
3189 3334 3.510360 CCTAGAGAGAAAACGAGGGTTCA 59.490 47.826 0.00 0.00 34.62 3.18
3285 3454 2.544726 CTTCCAAGGAAGGCACGTC 58.455 57.895 18.98 0.00 45.60 4.34
3318 3490 5.409826 TCTTCTCTTTGGAAGAAGAAATCGC 59.590 40.000 11.97 0.00 45.67 4.58
3418 3590 2.671682 GACAGGCCAAGAGGGGAC 59.328 66.667 5.01 0.00 37.04 4.46
3534 3706 2.857152 GTTTTGTTTTGATGCGCACTCA 59.143 40.909 14.90 15.31 0.00 3.41
3536 3708 1.308047 TGTTTTGATGCGCACTCACT 58.692 45.000 14.90 0.00 0.00 3.41
3537 3709 1.264020 TGTTTTGATGCGCACTCACTC 59.736 47.619 14.90 6.62 0.00 3.51
3538 3710 1.264020 GTTTTGATGCGCACTCACTCA 59.736 47.619 14.90 9.89 0.00 3.41
3539 3711 1.812235 TTTGATGCGCACTCACTCAT 58.188 45.000 14.90 0.00 0.00 2.90
3540 3712 1.812235 TTGATGCGCACTCACTCATT 58.188 45.000 14.90 0.00 0.00 2.57
3541 3713 1.362768 TGATGCGCACTCACTCATTC 58.637 50.000 14.90 3.03 0.00 2.67
3542 3714 1.066645 TGATGCGCACTCACTCATTCT 60.067 47.619 14.90 0.00 0.00 2.40
3543 3715 1.592081 GATGCGCACTCACTCATTCTC 59.408 52.381 14.90 0.00 0.00 2.87
3549 3742 3.114809 GCACTCACTCATTCTCATCGAG 58.885 50.000 0.00 0.00 0.00 4.04
3558 3751 2.647529 TTCTCATCGAGCTGCGTAAA 57.352 45.000 0.00 0.00 41.80 2.01
3563 3756 1.726791 CATCGAGCTGCGTAAACTGTT 59.273 47.619 0.00 0.00 41.80 3.16
3564 3757 1.860676 TCGAGCTGCGTAAACTGTTT 58.139 45.000 10.98 10.98 41.80 2.83
3592 3785 8.454570 TTTGCAAGATGATTATTCATAGCTGA 57.545 30.769 0.00 0.00 42.73 4.26
3616 3813 8.763356 TGAAAATATTTGCATGTGTCAACTTTC 58.237 29.630 4.62 0.00 0.00 2.62
3619 3816 3.607422 TTGCATGTGTCAACTTTCGAG 57.393 42.857 0.00 0.00 0.00 4.04
3631 3828 5.792468 GTCAACTTTCGAGCAGATGAAAATC 59.208 40.000 7.85 0.00 34.00 2.17
3632 3829 5.469760 TCAACTTTCGAGCAGATGAAAATCA 59.530 36.000 4.71 0.00 34.00 2.57
3633 3830 6.149973 TCAACTTTCGAGCAGATGAAAATCAT 59.850 34.615 4.71 0.00 40.34 2.45
3793 4002 1.293498 CACGAGGGACAGGTTCCTG 59.707 63.158 16.25 16.25 45.09 3.86
4019 4263 0.107508 ATGGTCGAGCAGTCAATGGG 60.108 55.000 23.06 0.00 0.00 4.00
4049 4293 1.862201 CACATTGCTTGCTTGTTGGTG 59.138 47.619 0.00 0.00 0.00 4.17
4050 4294 1.481772 ACATTGCTTGCTTGTTGGTGT 59.518 42.857 0.00 0.00 0.00 4.16
4185 4436 7.269316 TGGAGATCTTGCGTGTAAATATACAA 58.731 34.615 0.00 0.00 43.41 2.41
4186 4437 7.931407 TGGAGATCTTGCGTGTAAATATACAAT 59.069 33.333 0.00 0.00 43.41 2.71
4187 4438 9.419297 GGAGATCTTGCGTGTAAATATACAATA 57.581 33.333 0.00 0.00 43.41 1.90
4238 4513 7.658575 AGAGAGGAAACGTATATACAGAGAGAC 59.341 40.741 13.22 0.26 0.00 3.36
4259 4534 2.677836 CAGAGAGAGAGAGAGGTGTTCG 59.322 54.545 0.00 0.00 0.00 3.95
4261 4536 3.078837 GAGAGAGAGAGAGGTGTTCGTT 58.921 50.000 0.00 0.00 0.00 3.85
4304 4616 1.375396 CCAAGTCGCGAATCCACCA 60.375 57.895 12.06 0.00 0.00 4.17
4305 4617 1.635663 CCAAGTCGCGAATCCACCAC 61.636 60.000 12.06 0.00 0.00 4.16
4424 4743 2.355126 CGGATGATGAGTCGGCCG 60.355 66.667 22.12 22.12 37.34 6.13
4501 4822 2.350772 CGTGTTTCATTGACCTTCTGCC 60.351 50.000 0.00 0.00 0.00 4.85
4572 4893 1.509787 GCACTTACATGCGCGTGTG 60.510 57.895 38.55 27.23 35.50 3.82
4574 4895 0.450972 CACTTACATGCGCGTGTGTG 60.451 55.000 38.55 32.81 33.62 3.82
4575 4896 0.878523 ACTTACATGCGCGTGTGTGT 60.879 50.000 38.55 31.52 33.62 3.72
4576 4897 1.064582 CTTACATGCGCGTGTGTGTA 58.935 50.000 38.55 20.69 33.62 2.90
4577 4898 1.658596 CTTACATGCGCGTGTGTGTAT 59.341 47.619 38.55 18.01 33.62 2.29
4578 4899 1.273688 TACATGCGCGTGTGTGTATC 58.726 50.000 38.55 0.00 33.62 2.24
4579 4900 0.389817 ACATGCGCGTGTGTGTATCT 60.390 50.000 33.17 6.87 0.00 1.98
4580 4901 0.025384 CATGCGCGTGTGTGTATCTG 59.975 55.000 21.57 0.00 0.00 2.90
4620 4941 3.243975 TGACCGGTTCTAAGTTGGACTTC 60.244 47.826 9.42 0.00 39.51 3.01
4624 4945 2.074576 GTTCTAAGTTGGACTTCGGCC 58.925 52.381 0.00 0.00 39.51 6.13
4657 4978 4.533707 AGAGACTTCCATGTCCAAGATCAA 59.466 41.667 0.00 0.00 37.66 2.57
4661 4982 5.573219 ACTTCCATGTCCAAGATCAATGAA 58.427 37.500 0.00 0.00 0.00 2.57
4663 4984 4.529897 TCCATGTCCAAGATCAATGAAGG 58.470 43.478 0.00 0.00 0.00 3.46
4719 5040 1.140852 TGTCTTGTGTTGACCTCCCAG 59.859 52.381 0.00 0.00 33.83 4.45
4753 5093 2.176202 TAGAGCCCAGCTACCACCCA 62.176 60.000 0.00 0.00 39.88 4.51
4809 5149 2.627515 TGCCATCCTTATCTGCTGTC 57.372 50.000 0.00 0.00 0.00 3.51
4810 5150 1.141657 TGCCATCCTTATCTGCTGTCC 59.858 52.381 0.00 0.00 0.00 4.02
4811 5151 1.875576 GCCATCCTTATCTGCTGTCCG 60.876 57.143 0.00 0.00 0.00 4.79
4812 5152 1.414181 CCATCCTTATCTGCTGTCCGT 59.586 52.381 0.00 0.00 0.00 4.69
4813 5153 2.628178 CCATCCTTATCTGCTGTCCGTA 59.372 50.000 0.00 0.00 0.00 4.02
4814 5154 3.305676 CCATCCTTATCTGCTGTCCGTAG 60.306 52.174 0.00 0.00 0.00 3.51
4815 5155 3.014304 TCCTTATCTGCTGTCCGTAGT 57.986 47.619 0.00 0.00 0.00 2.73
4816 5156 4.160642 TCCTTATCTGCTGTCCGTAGTA 57.839 45.455 0.00 0.00 0.00 1.82
4817 5157 4.726583 TCCTTATCTGCTGTCCGTAGTAT 58.273 43.478 0.00 0.00 0.00 2.12
4820 5160 3.717400 ATCTGCTGTCCGTAGTATGTG 57.283 47.619 0.00 0.00 0.00 3.21
4823 5163 1.480545 TGCTGTCCGTAGTATGTGCAT 59.519 47.619 0.00 0.00 0.00 3.96
4838 5178 1.302752 GCATGACACTGTGGGAGCA 60.303 57.895 13.09 5.19 0.00 4.26
4839 5179 1.303799 GCATGACACTGTGGGAGCAG 61.304 60.000 13.09 0.00 41.92 4.24
4865 5205 2.091541 CCGCCCTTCTTTGAATGCTTA 58.908 47.619 0.00 0.00 0.00 3.09
4866 5206 2.159379 CCGCCCTTCTTTGAATGCTTAC 60.159 50.000 0.00 0.00 0.00 2.34
4881 5221 3.855858 TGCTTACGCTGACATTGTGATA 58.144 40.909 0.00 0.00 36.97 2.15
4882 5222 3.616821 TGCTTACGCTGACATTGTGATAC 59.383 43.478 0.00 0.00 36.97 2.24
4883 5223 3.301835 GCTTACGCTGACATTGTGATACG 60.302 47.826 0.00 0.00 0.00 3.06
4884 5224 2.363788 ACGCTGACATTGTGATACGT 57.636 45.000 0.00 0.00 0.00 3.57
4885 5225 3.497297 ACGCTGACATTGTGATACGTA 57.503 42.857 0.00 0.00 0.00 3.57
4886 5226 4.041740 ACGCTGACATTGTGATACGTAT 57.958 40.909 8.05 8.05 0.00 3.06
4932 5272 1.821332 CTCTTGGATTCAGCGCCCC 60.821 63.158 2.29 0.00 0.00 5.80
4946 5286 1.953311 GCGCCCCCACTGAAATTCTAA 60.953 52.381 0.00 0.00 0.00 2.10
4951 5291 4.599041 CCCCCACTGAAATTCTAACATCA 58.401 43.478 0.00 0.00 0.00 3.07
4960 5300 7.009179 TGAAATTCTAACATCAGGTCAGAGT 57.991 36.000 0.00 0.00 0.00 3.24
4963 5303 6.865834 ATTCTAACATCAGGTCAGAGTCTT 57.134 37.500 0.00 0.00 0.00 3.01
4964 5304 7.962995 ATTCTAACATCAGGTCAGAGTCTTA 57.037 36.000 0.00 0.00 0.00 2.10
4968 5555 8.253810 TCTAACATCAGGTCAGAGTCTTAAATG 58.746 37.037 0.00 0.00 0.00 2.32
5036 6488 9.209175 TCTATGCTGTTCTAGAAAGAAAAGAAC 57.791 33.333 6.78 7.35 46.33 3.01
5071 6523 4.687215 TGCTTGCGCGCTTCTCCT 62.687 61.111 33.29 0.00 39.65 3.69
5073 6525 2.781300 CTTGCGCGCTTCTCCTTC 59.219 61.111 33.29 0.00 0.00 3.46
5074 6526 1.739562 CTTGCGCGCTTCTCCTTCT 60.740 57.895 33.29 0.00 0.00 2.85
5075 6527 1.964290 CTTGCGCGCTTCTCCTTCTG 61.964 60.000 33.29 5.87 0.00 3.02
5081 6533 2.352225 CGCGCTTCTCCTTCTGCTATAT 60.352 50.000 5.56 0.00 0.00 0.86
5082 6534 2.992543 GCGCTTCTCCTTCTGCTATATG 59.007 50.000 0.00 0.00 0.00 1.78
5083 6535 3.583806 CGCTTCTCCTTCTGCTATATGG 58.416 50.000 0.00 0.00 0.00 2.74
5085 6537 4.502259 CGCTTCTCCTTCTGCTATATGGTT 60.502 45.833 0.00 0.00 0.00 3.67
5087 6539 5.825151 GCTTCTCCTTCTGCTATATGGTTTT 59.175 40.000 0.00 0.00 0.00 2.43
5088 6540 6.017523 GCTTCTCCTTCTGCTATATGGTTTTC 60.018 42.308 0.00 0.00 0.00 2.29
5109 7099 1.448497 GAGGAACGGTGGGTGACAA 59.552 57.895 0.00 0.00 0.00 3.18
5121 7111 3.131400 GTGGGTGACAAGCAAAGGTTTTA 59.869 43.478 0.00 0.00 0.00 1.52
5122 7112 3.964031 TGGGTGACAAGCAAAGGTTTTAT 59.036 39.130 0.00 0.00 0.00 1.40
5123 7113 4.407296 TGGGTGACAAGCAAAGGTTTTATT 59.593 37.500 0.00 0.00 0.00 1.40
5124 7114 4.988540 GGGTGACAAGCAAAGGTTTTATTC 59.011 41.667 0.00 0.00 0.00 1.75
5128 7118 4.956085 ACAAGCAAAGGTTTTATTCCACC 58.044 39.130 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.486879 AAACCAATGGCTCCCTTGGA 59.513 50.000 23.81 0.00 43.83 3.53
12 13 0.897621 GAAACCAATGGCTCCCTTGG 59.102 55.000 17.79 17.79 46.03 3.61
13 14 0.897621 GGAAACCAATGGCTCCCTTG 59.102 55.000 9.30 0.00 0.00 3.61
14 15 0.486879 TGGAAACCAATGGCTCCCTT 59.513 50.000 15.93 0.00 29.71 3.95
15 16 0.712380 ATGGAAACCAATGGCTCCCT 59.288 50.000 15.93 5.91 36.95 4.20
16 17 0.826062 CATGGAAACCAATGGCTCCC 59.174 55.000 15.93 7.77 36.95 4.30
17 18 0.826062 CCATGGAAACCAATGGCTCC 59.174 55.000 5.56 12.72 36.95 4.70
18 19 0.176449 GCCATGGAAACCAATGGCTC 59.824 55.000 18.40 0.00 45.62 4.70
19 20 1.266867 GGCCATGGAAACCAATGGCT 61.267 55.000 26.44 0.00 46.87 4.75
20 21 1.221566 GGCCATGGAAACCAATGGC 59.778 57.895 18.40 23.06 46.92 4.40
21 22 1.257055 ACGGCCATGGAAACCAATGG 61.257 55.000 18.40 0.00 36.95 3.16
22 23 0.108709 CACGGCCATGGAAACCAATG 60.109 55.000 18.40 4.90 36.95 2.82
23 24 0.541764 ACACGGCCATGGAAACCAAT 60.542 50.000 18.40 0.00 36.95 3.16
24 25 0.757188 AACACGGCCATGGAAACCAA 60.757 50.000 18.40 0.00 36.95 3.67
25 26 1.152652 AACACGGCCATGGAAACCA 60.153 52.632 18.40 0.00 38.19 3.67
26 27 1.175983 TGAACACGGCCATGGAAACC 61.176 55.000 18.40 6.34 0.00 3.27
27 28 0.039527 GTGAACACGGCCATGGAAAC 60.040 55.000 18.40 3.44 0.00 2.78
28 29 2.336341 GTGAACACGGCCATGGAAA 58.664 52.632 18.40 0.00 0.00 3.13
29 30 4.073052 GTGAACACGGCCATGGAA 57.927 55.556 18.40 0.00 0.00 3.53
38 39 4.068858 CGATCAACTCGTCGTGAACACG 62.069 54.545 19.22 19.22 46.20 4.49
39 40 1.382419 CGATCAACTCGTCGTGAACAC 59.618 52.381 0.56 0.00 42.56 3.32
40 41 1.681825 CGATCAACTCGTCGTGAACA 58.318 50.000 0.56 0.00 42.56 3.18
50 51 1.808411 TGGGCAAAGACGATCAACTC 58.192 50.000 0.00 0.00 0.00 3.01
51 52 2.290260 TGATGGGCAAAGACGATCAACT 60.290 45.455 0.00 0.00 0.00 3.16
52 53 2.083774 TGATGGGCAAAGACGATCAAC 58.916 47.619 0.00 0.00 0.00 3.18
53 54 2.488204 TGATGGGCAAAGACGATCAA 57.512 45.000 0.00 0.00 0.00 2.57
54 55 2.564771 GATGATGGGCAAAGACGATCA 58.435 47.619 0.00 0.00 0.00 2.92
55 56 1.876156 GGATGATGGGCAAAGACGATC 59.124 52.381 0.00 0.00 0.00 3.69
56 57 1.811558 CGGATGATGGGCAAAGACGAT 60.812 52.381 0.00 0.00 0.00 3.73
57 58 0.461870 CGGATGATGGGCAAAGACGA 60.462 55.000 0.00 0.00 0.00 4.20
58 59 2.016961 CGGATGATGGGCAAAGACG 58.983 57.895 0.00 0.00 0.00 4.18
59 60 1.031571 TGCGGATGATGGGCAAAGAC 61.032 55.000 0.00 0.00 33.01 3.01
60 61 1.031571 GTGCGGATGATGGGCAAAGA 61.032 55.000 0.00 0.00 38.58 2.52
61 62 1.434696 GTGCGGATGATGGGCAAAG 59.565 57.895 0.00 0.00 38.58 2.77
62 63 2.405805 CGTGCGGATGATGGGCAAA 61.406 57.895 0.00 0.00 38.58 3.68
63 64 2.823593 CGTGCGGATGATGGGCAA 60.824 61.111 0.00 0.00 38.58 4.52
64 65 3.738429 CTCGTGCGGATGATGGGCA 62.738 63.158 0.00 0.00 0.00 5.36
65 66 2.969238 CTCGTGCGGATGATGGGC 60.969 66.667 0.00 0.00 0.00 5.36
66 67 0.744414 AAACTCGTGCGGATGATGGG 60.744 55.000 0.00 0.00 0.00 4.00
67 68 1.062587 GAAAACTCGTGCGGATGATGG 59.937 52.381 0.00 0.00 0.00 3.51
68 69 2.002586 AGAAAACTCGTGCGGATGATG 58.997 47.619 0.00 0.00 0.00 3.07
69 70 2.271800 GAGAAAACTCGTGCGGATGAT 58.728 47.619 0.00 0.00 0.00 2.45
70 71 1.671850 GGAGAAAACTCGTGCGGATGA 60.672 52.381 0.00 0.00 0.00 2.92
71 72 0.721718 GGAGAAAACTCGTGCGGATG 59.278 55.000 0.00 0.00 0.00 3.51
72 73 0.608640 AGGAGAAAACTCGTGCGGAT 59.391 50.000 0.00 0.00 0.00 4.18
73 74 0.391597 AAGGAGAAAACTCGTGCGGA 59.608 50.000 0.00 0.00 0.00 5.54
74 75 0.512952 CAAGGAGAAAACTCGTGCGG 59.487 55.000 0.00 0.00 0.00 5.69
75 76 1.192534 GTCAAGGAGAAAACTCGTGCG 59.807 52.381 0.00 0.00 0.00 5.34
76 77 1.192534 CGTCAAGGAGAAAACTCGTGC 59.807 52.381 0.00 0.00 0.00 5.34
77 78 2.470821 ACGTCAAGGAGAAAACTCGTG 58.529 47.619 0.00 0.00 0.00 4.35
78 79 2.545322 GGACGTCAAGGAGAAAACTCGT 60.545 50.000 18.91 0.00 0.00 4.18
79 80 2.059541 GGACGTCAAGGAGAAAACTCG 58.940 52.381 18.91 0.00 0.00 4.18
80 81 3.388345 AGGACGTCAAGGAGAAAACTC 57.612 47.619 18.91 0.00 0.00 3.01
81 82 4.150359 TCTAGGACGTCAAGGAGAAAACT 58.850 43.478 18.91 3.41 0.00 2.66
82 83 4.516365 TCTAGGACGTCAAGGAGAAAAC 57.484 45.455 18.91 0.00 0.00 2.43
83 84 5.245301 TCATTCTAGGACGTCAAGGAGAAAA 59.755 40.000 18.91 9.30 0.00 2.29
84 85 4.770531 TCATTCTAGGACGTCAAGGAGAAA 59.229 41.667 18.91 4.90 0.00 2.52
85 86 4.341487 TCATTCTAGGACGTCAAGGAGAA 58.659 43.478 18.91 18.00 0.00 2.87
86 87 3.964411 TCATTCTAGGACGTCAAGGAGA 58.036 45.455 18.91 10.51 0.00 3.71
87 88 4.158764 AGTTCATTCTAGGACGTCAAGGAG 59.841 45.833 18.91 8.28 0.00 3.69
88 89 4.082190 CAGTTCATTCTAGGACGTCAAGGA 60.082 45.833 18.91 9.26 0.00 3.36
89 90 4.177026 CAGTTCATTCTAGGACGTCAAGG 58.823 47.826 18.91 4.75 0.00 3.61
90 91 4.810790 ACAGTTCATTCTAGGACGTCAAG 58.189 43.478 18.91 13.94 0.00 3.02
91 92 4.866508 ACAGTTCATTCTAGGACGTCAA 57.133 40.909 18.91 2.89 0.00 3.18
92 93 5.008331 ACTACAGTTCATTCTAGGACGTCA 58.992 41.667 18.91 0.00 0.00 4.35
93 94 5.333513 CACTACAGTTCATTCTAGGACGTC 58.666 45.833 7.13 7.13 0.00 4.34
94 95 4.158025 CCACTACAGTTCATTCTAGGACGT 59.842 45.833 0.00 0.00 0.00 4.34
95 96 4.440250 CCCACTACAGTTCATTCTAGGACG 60.440 50.000 0.00 0.00 0.00 4.79
96 97 4.466726 ACCCACTACAGTTCATTCTAGGAC 59.533 45.833 0.00 0.00 0.00 3.85
97 98 4.684724 ACCCACTACAGTTCATTCTAGGA 58.315 43.478 0.00 0.00 0.00 2.94
98 99 6.540438 TTACCCACTACAGTTCATTCTAGG 57.460 41.667 0.00 0.00 0.00 3.02
99 100 6.535508 GCTTTACCCACTACAGTTCATTCTAG 59.464 42.308 0.00 0.00 0.00 2.43
100 101 6.403878 GCTTTACCCACTACAGTTCATTCTA 58.596 40.000 0.00 0.00 0.00 2.10
101 102 5.246307 GCTTTACCCACTACAGTTCATTCT 58.754 41.667 0.00 0.00 0.00 2.40
102 103 4.395231 GGCTTTACCCACTACAGTTCATTC 59.605 45.833 0.00 0.00 0.00 2.67
103 104 4.042934 AGGCTTTACCCACTACAGTTCATT 59.957 41.667 0.00 0.00 40.58 2.57
104 105 3.587506 AGGCTTTACCCACTACAGTTCAT 59.412 43.478 0.00 0.00 40.58 2.57
105 106 2.976882 AGGCTTTACCCACTACAGTTCA 59.023 45.455 0.00 0.00 40.58 3.18
106 107 3.697619 AGGCTTTACCCACTACAGTTC 57.302 47.619 0.00 0.00 40.58 3.01
107 108 3.244805 GGAAGGCTTTACCCACTACAGTT 60.245 47.826 0.00 0.00 40.58 3.16
108 109 2.305052 GGAAGGCTTTACCCACTACAGT 59.695 50.000 0.00 0.00 40.58 3.55
109 110 2.355818 GGGAAGGCTTTACCCACTACAG 60.356 54.545 17.00 0.00 42.81 2.74
110 111 1.631898 GGGAAGGCTTTACCCACTACA 59.368 52.381 17.00 0.00 42.81 2.74
111 112 1.406477 CGGGAAGGCTTTACCCACTAC 60.406 57.143 20.54 0.00 43.40 2.73
112 113 0.906775 CGGGAAGGCTTTACCCACTA 59.093 55.000 20.54 0.00 43.40 2.74
113 114 0.838987 TCGGGAAGGCTTTACCCACT 60.839 55.000 20.54 0.00 43.40 4.00
114 115 0.392595 CTCGGGAAGGCTTTACCCAC 60.393 60.000 20.54 0.72 43.40 4.61
115 116 1.988015 CTCGGGAAGGCTTTACCCA 59.012 57.895 20.54 6.88 43.40 4.51
116 117 1.451567 GCTCGGGAAGGCTTTACCC 60.452 63.158 12.89 12.89 40.58 3.69
117 118 1.814169 CGCTCGGGAAGGCTTTACC 60.814 63.158 0.00 0.00 39.61 2.85
118 119 0.179081 ATCGCTCGGGAAGGCTTTAC 60.179 55.000 0.00 0.00 0.00 2.01
119 120 0.104304 GATCGCTCGGGAAGGCTTTA 59.896 55.000 0.00 0.00 0.00 1.85
120 121 1.153349 GATCGCTCGGGAAGGCTTT 60.153 57.895 0.00 0.00 0.00 3.51
121 122 1.899437 TTGATCGCTCGGGAAGGCTT 61.899 55.000 0.00 0.00 0.00 4.35
122 123 1.899437 TTTGATCGCTCGGGAAGGCT 61.899 55.000 0.00 0.00 0.00 4.58
123 124 0.815615 ATTTGATCGCTCGGGAAGGC 60.816 55.000 0.00 0.00 0.00 4.35
124 125 1.221414 GATTTGATCGCTCGGGAAGG 58.779 55.000 0.00 0.00 0.00 3.46
125 126 1.594862 GTGATTTGATCGCTCGGGAAG 59.405 52.381 0.00 0.00 36.86 3.46
126 127 1.651987 GTGATTTGATCGCTCGGGAA 58.348 50.000 0.00 0.00 36.86 3.97
127 128 0.179084 GGTGATTTGATCGCTCGGGA 60.179 55.000 0.00 0.00 39.66 5.14
128 129 0.461870 TGGTGATTTGATCGCTCGGG 60.462 55.000 2.01 0.00 39.66 5.14
129 130 1.586422 ATGGTGATTTGATCGCTCGG 58.414 50.000 2.01 0.00 39.66 4.63
130 131 2.609002 TGAATGGTGATTTGATCGCTCG 59.391 45.455 2.01 0.00 39.66 5.03
131 132 3.624861 AGTGAATGGTGATTTGATCGCTC 59.375 43.478 2.01 0.00 39.66 5.03
132 133 3.376234 CAGTGAATGGTGATTTGATCGCT 59.624 43.478 2.01 0.00 39.66 4.93
133 134 3.488047 CCAGTGAATGGTGATTTGATCGC 60.488 47.826 0.00 0.00 44.91 4.58
134 135 4.282950 CCAGTGAATGGTGATTTGATCG 57.717 45.455 0.00 0.00 44.91 3.69
150 151 0.247460 TCGAAGATCACCAGCCAGTG 59.753 55.000 0.00 0.00 39.20 3.66
151 152 1.198713 ATCGAAGATCACCAGCCAGT 58.801 50.000 0.00 0.00 45.12 4.00
152 153 3.324117 CATATCGAAGATCACCAGCCAG 58.676 50.000 0.00 0.00 45.12 4.85
153 154 2.037641 CCATATCGAAGATCACCAGCCA 59.962 50.000 0.00 0.00 45.12 4.75
154 155 2.300152 TCCATATCGAAGATCACCAGCC 59.700 50.000 0.00 0.00 45.12 4.85
155 156 3.667497 TCCATATCGAAGATCACCAGC 57.333 47.619 0.00 0.00 45.12 4.85
156 157 3.993081 GCTTCCATATCGAAGATCACCAG 59.007 47.826 13.57 0.00 45.12 4.00
157 158 3.643320 AGCTTCCATATCGAAGATCACCA 59.357 43.478 13.57 0.00 45.12 4.17
158 159 4.264460 AGCTTCCATATCGAAGATCACC 57.736 45.455 13.57 0.00 45.12 4.02
159 160 5.809562 CCATAGCTTCCATATCGAAGATCAC 59.190 44.000 13.57 0.00 45.12 3.06
160 161 5.105187 CCCATAGCTTCCATATCGAAGATCA 60.105 44.000 13.57 0.00 45.12 2.92
161 162 5.105146 ACCCATAGCTTCCATATCGAAGATC 60.105 44.000 13.57 0.00 45.12 2.75
162 163 4.780021 ACCCATAGCTTCCATATCGAAGAT 59.220 41.667 13.57 9.86 45.12 2.40
163 164 4.021104 CACCCATAGCTTCCATATCGAAGA 60.021 45.833 13.57 0.00 41.57 2.87
164 165 4.248859 CACCCATAGCTTCCATATCGAAG 58.751 47.826 5.77 5.77 41.88 3.79
165 166 3.646162 ACACCCATAGCTTCCATATCGAA 59.354 43.478 0.00 0.00 0.00 3.71
166 167 3.239449 ACACCCATAGCTTCCATATCGA 58.761 45.455 0.00 0.00 0.00 3.59
167 168 3.685139 ACACCCATAGCTTCCATATCG 57.315 47.619 0.00 0.00 0.00 2.92
168 169 4.929808 CGTAACACCCATAGCTTCCATATC 59.070 45.833 0.00 0.00 0.00 1.63
169 170 4.262894 CCGTAACACCCATAGCTTCCATAT 60.263 45.833 0.00 0.00 0.00 1.78
170 171 3.070446 CCGTAACACCCATAGCTTCCATA 59.930 47.826 0.00 0.00 0.00 2.74
171 172 2.158813 CCGTAACACCCATAGCTTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
172 173 1.208535 CCGTAACACCCATAGCTTCCA 59.791 52.381 0.00 0.00 0.00 3.53
173 174 1.483415 TCCGTAACACCCATAGCTTCC 59.517 52.381 0.00 0.00 0.00 3.46
174 175 2.973694 TCCGTAACACCCATAGCTTC 57.026 50.000 0.00 0.00 0.00 3.86
175 176 2.158813 CCATCCGTAACACCCATAGCTT 60.159 50.000 0.00 0.00 0.00 3.74
176 177 1.416401 CCATCCGTAACACCCATAGCT 59.584 52.381 0.00 0.00 0.00 3.32
177 178 1.414919 TCCATCCGTAACACCCATAGC 59.585 52.381 0.00 0.00 0.00 2.97
178 179 3.557054 CCATCCATCCGTAACACCCATAG 60.557 52.174 0.00 0.00 0.00 2.23
179 180 2.370519 CCATCCATCCGTAACACCCATA 59.629 50.000 0.00 0.00 0.00 2.74
180 181 1.142870 CCATCCATCCGTAACACCCAT 59.857 52.381 0.00 0.00 0.00 4.00
181 182 0.544223 CCATCCATCCGTAACACCCA 59.456 55.000 0.00 0.00 0.00 4.51
182 183 0.179029 CCCATCCATCCGTAACACCC 60.179 60.000 0.00 0.00 0.00 4.61
183 184 0.834612 TCCCATCCATCCGTAACACC 59.165 55.000 0.00 0.00 0.00 4.16
184 185 1.760613 TCTCCCATCCATCCGTAACAC 59.239 52.381 0.00 0.00 0.00 3.32
205 206 0.685458 GTGGCCGGTACTCCCTCTTA 60.685 60.000 1.90 0.00 0.00 2.10
206 207 1.988406 GTGGCCGGTACTCCCTCTT 60.988 63.158 1.90 0.00 0.00 2.85
256 260 2.624264 GACGACGCACGCAGTTTT 59.376 55.556 0.00 0.00 41.61 2.43
320 325 0.586802 GATAAAATCCAGCGCCCGTC 59.413 55.000 2.29 0.00 0.00 4.79
336 364 4.252878 TGACGAAGCATGCAGAAAAGATA 58.747 39.130 21.98 0.00 0.00 1.98
353 381 0.902531 GGAAACCTGAGGGATGACGA 59.097 55.000 2.38 0.00 36.25 4.20
382 410 2.179517 CGTGTGACTCCCGCTCTC 59.820 66.667 0.00 0.00 0.00 3.20
390 418 1.222115 GGAAGTGGTGCGTGTGACTC 61.222 60.000 0.00 0.00 0.00 3.36
391 419 1.227556 GGAAGTGGTGCGTGTGACT 60.228 57.895 0.00 0.00 0.00 3.41
393 421 1.522806 GTGGAAGTGGTGCGTGTGA 60.523 57.895 0.00 0.00 0.00 3.58
394 422 1.775039 CTGTGGAAGTGGTGCGTGTG 61.775 60.000 0.00 0.00 0.00 3.82
395 423 1.523711 CTGTGGAAGTGGTGCGTGT 60.524 57.895 0.00 0.00 0.00 4.49
399 427 0.603975 GACTCCTGTGGAAGTGGTGC 60.604 60.000 0.00 0.00 0.00 5.01
406 434 1.070786 GCCGTTGACTCCTGTGGAA 59.929 57.895 0.00 0.00 0.00 3.53
407 435 0.541063 TAGCCGTTGACTCCTGTGGA 60.541 55.000 0.00 0.00 0.00 4.02
430 458 2.636412 CCGTTCCACCTCGCTCTCA 61.636 63.158 0.00 0.00 0.00 3.27
432 460 1.906824 TTCCGTTCCACCTCGCTCT 60.907 57.895 0.00 0.00 0.00 4.09
485 543 3.827722 TGCCGGAATATTTTAAGAGGGG 58.172 45.455 5.05 0.00 0.00 4.79
486 544 6.040391 TGAAATGCCGGAATATTTTAAGAGGG 59.960 38.462 5.05 0.00 0.00 4.30
534 592 0.768221 TGACTTGGGGAGTTGGAGCT 60.768 55.000 0.00 0.00 39.19 4.09
570 639 1.615919 GGGATTATAATGCGGGGTGGG 60.616 57.143 10.44 0.00 0.00 4.61
573 642 0.702316 GGGGGATTATAATGCGGGGT 59.298 55.000 10.44 0.00 0.00 4.95
958 1027 4.517934 TAGGGAGGAGGACCGGCG 62.518 72.222 0.00 0.00 41.83 6.46
959 1028 2.838693 GTAGGGAGGAGGACCGGC 60.839 72.222 0.00 0.00 41.83 6.13
960 1029 2.123382 GGTAGGGAGGAGGACCGG 60.123 72.222 0.00 0.00 41.83 5.28
961 1030 2.123382 GGGTAGGGAGGAGGACCG 60.123 72.222 0.00 0.00 41.83 4.79
962 1031 2.286213 GGGGTAGGGAGGAGGACC 59.714 72.222 0.00 0.00 0.00 4.46
963 1032 1.233659 GAGGGGTAGGGAGGAGGAC 59.766 68.421 0.00 0.00 0.00 3.85
964 1033 2.019272 GGAGGGGTAGGGAGGAGGA 61.019 68.421 0.00 0.00 0.00 3.71
965 1034 2.333462 TGGAGGGGTAGGGAGGAGG 61.333 68.421 0.00 0.00 0.00 4.30
966 1035 1.075151 GTGGAGGGGTAGGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
967 1036 2.643808 GGTGGAGGGGTAGGGAGGA 61.644 68.421 0.00 0.00 0.00 3.71
968 1037 2.040779 GGTGGAGGGGTAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
969 1038 0.764752 GATGGTGGAGGGGTAGGGAG 60.765 65.000 0.00 0.00 0.00 4.30
970 1039 1.316969 GATGGTGGAGGGGTAGGGA 59.683 63.158 0.00 0.00 0.00 4.20
971 1040 2.140792 CGATGGTGGAGGGGTAGGG 61.141 68.421 0.00 0.00 0.00 3.53
972 1041 2.808206 GCGATGGTGGAGGGGTAGG 61.808 68.421 0.00 0.00 0.00 3.18
973 1042 2.822399 GCGATGGTGGAGGGGTAG 59.178 66.667 0.00 0.00 0.00 3.18
974 1043 3.151710 CGCGATGGTGGAGGGGTA 61.152 66.667 0.00 0.00 0.00 3.69
1119 1194 2.650116 GCAGAAGGAGTGGCCGAGA 61.650 63.158 0.00 0.00 43.43 4.04
2121 2196 1.737735 CTTGAGCACGGCGATGTGA 60.738 57.895 16.62 0.00 42.55 3.58
2431 2506 1.960417 TCATGTTTGGTGTGAGCGAA 58.040 45.000 0.00 0.00 0.00 4.70
2433 2508 2.725759 CGAATCATGTTTGGTGTGAGCG 60.726 50.000 0.00 0.00 0.00 5.03
2443 2518 7.147312 TCAATTTTCAAGCTCGAATCATGTTT 58.853 30.769 0.00 0.00 0.00 2.83
2481 2556 4.063689 CACAGATAAGCCATCATCAGACC 58.936 47.826 0.00 0.00 35.96 3.85
2494 2575 2.874086 TGCATTGATCGGCACAGATAAG 59.126 45.455 2.77 0.00 34.58 1.73
2677 2758 6.485984 AGCATAATCATGATCACTCAAGGAAC 59.514 38.462 9.06 0.00 34.37 3.62
2831 2943 4.235939 TGTGATTTCCCAACATTTGACG 57.764 40.909 0.00 0.00 0.00 4.35
2843 2955 4.400251 TGCTGATCCATCTTTGTGATTTCC 59.600 41.667 0.00 0.00 32.05 3.13
3006 3140 4.330074 CAGTTCAACTTGGATGGTCGTATC 59.670 45.833 0.00 0.00 0.00 2.24
3092 3226 5.606348 AGGGAACTGAGCTAACTTATCAG 57.394 43.478 0.00 0.08 44.81 2.90
3169 3307 5.740290 AATGAACCCTCGTTTTCTCTCTA 57.260 39.130 0.00 0.00 30.30 2.43
3285 3454 6.796629 CTTCCAAAGAGAAGAAAAACAACG 57.203 37.500 0.00 0.00 45.08 4.10
3311 3480 0.749454 ACATGGCAGGAGGCGATTTC 60.749 55.000 5.99 0.00 46.16 2.17
3318 3490 1.171308 CACTTTCACATGGCAGGAGG 58.829 55.000 5.99 0.00 0.00 4.30
3534 3706 1.535649 CGCAGCTCGATGAGAATGAGT 60.536 52.381 0.00 0.00 41.67 3.41
3536 3708 0.457443 ACGCAGCTCGATGAGAATGA 59.543 50.000 11.64 0.00 41.67 2.57
3537 3709 2.125461 TACGCAGCTCGATGAGAATG 57.875 50.000 11.64 0.00 41.67 2.67
3538 3710 2.860735 GTTTACGCAGCTCGATGAGAAT 59.139 45.455 11.64 0.00 41.67 2.40
3539 3711 2.094700 AGTTTACGCAGCTCGATGAGAA 60.095 45.455 11.64 0.00 41.67 2.87
3540 3712 1.472878 AGTTTACGCAGCTCGATGAGA 59.527 47.619 11.64 0.00 41.67 3.27
3541 3713 1.585668 CAGTTTACGCAGCTCGATGAG 59.414 52.381 11.64 0.00 41.67 2.90
3542 3714 1.067846 ACAGTTTACGCAGCTCGATGA 60.068 47.619 11.64 0.00 41.67 2.92
3543 3715 1.350193 ACAGTTTACGCAGCTCGATG 58.650 50.000 11.64 0.00 41.67 3.84
3549 3742 4.442733 TGCAAAATAAACAGTTTACGCAGC 59.557 37.500 7.95 10.60 0.00 5.25
3585 3778 7.774134 TGACACATGCAAATATTTTCAGCTAT 58.226 30.769 6.67 0.00 0.00 2.97
3592 3785 7.651304 TCGAAAGTTGACACATGCAAATATTTT 59.349 29.630 0.00 0.00 0.00 1.82
3597 3790 4.539870 CTCGAAAGTTGACACATGCAAAT 58.460 39.130 0.00 0.00 0.00 2.32
3631 3828 3.869832 CACTCTTGTCAGCACATAGGATG 59.130 47.826 0.00 0.00 30.55 3.51
3632 3829 3.118482 CCACTCTTGTCAGCACATAGGAT 60.118 47.826 0.00 0.00 30.55 3.24
3633 3830 2.234661 CCACTCTTGTCAGCACATAGGA 59.765 50.000 0.00 0.00 30.55 2.94
3634 3831 2.027745 ACCACTCTTGTCAGCACATAGG 60.028 50.000 0.00 0.00 30.55 2.57
3635 3832 3.325293 ACCACTCTTGTCAGCACATAG 57.675 47.619 0.00 0.00 30.55 2.23
3636 3833 3.402110 CAACCACTCTTGTCAGCACATA 58.598 45.455 0.00 0.00 30.55 2.29
3793 4002 1.899534 CCCGTCCGAGGAGAGGATC 60.900 68.421 13.21 0.00 40.30 3.36
3928 4137 0.533308 TCGCCGTACCTGCTTTGTTT 60.533 50.000 1.12 0.00 0.00 2.83
3946 4155 3.494626 TGCAAGAAGACGATGACTTGTTC 59.505 43.478 0.00 0.00 40.88 3.18
4019 4263 2.669364 CAAGCAATGTGAGAAAGGTGC 58.331 47.619 0.00 0.00 0.00 5.01
4190 4441 9.246670 TCTCTCTAGCCTACTACTACTAGTATG 57.753 40.741 2.33 0.74 35.34 2.39
4192 4443 7.890127 CCTCTCTCTAGCCTACTACTACTAGTA 59.110 44.444 1.89 1.89 34.79 1.82
4193 4444 6.723052 CCTCTCTCTAGCCTACTACTACTAGT 59.277 46.154 0.00 0.00 37.04 2.57
4194 4445 6.950041 TCCTCTCTCTAGCCTACTACTACTAG 59.050 46.154 0.00 0.00 34.66 2.57
4238 4513 2.677836 CGAACACCTCTCTCTCTCTCTG 59.322 54.545 0.00 0.00 0.00 3.35
4304 4616 2.211279 AGCTGGGGGAAGAAGGGT 59.789 61.111 0.00 0.00 0.00 4.34
4305 4617 2.679716 CAGCTGGGGGAAGAAGGG 59.320 66.667 5.57 0.00 0.00 3.95
4396 4715 1.134995 TCATCATCCGTGACTCAGCAC 60.135 52.381 0.00 0.00 37.14 4.40
4397 4716 1.135721 CTCATCATCCGTGACTCAGCA 59.864 52.381 0.00 0.00 37.14 4.41
4424 4743 9.696917 AATTGATGAACAAATCCTCTTTTACAC 57.303 29.630 0.00 0.00 42.03 2.90
4482 4803 2.158475 AGGGCAGAAGGTCAATGAAACA 60.158 45.455 0.00 0.00 0.00 2.83
4556 4877 0.878523 ACACACACGCGCATGTAAGT 60.879 50.000 9.55 8.13 0.00 2.24
4557 4878 1.064582 TACACACACGCGCATGTAAG 58.935 50.000 9.55 7.40 0.00 2.34
4558 4879 1.656594 GATACACACACGCGCATGTAA 59.343 47.619 9.55 7.57 31.65 2.41
4572 4893 1.329906 GCAGATGCAGTGCAGATACAC 59.670 52.381 24.20 9.94 43.65 2.90
4574 4895 1.660167 TGCAGATGCAGTGCAGATAC 58.340 50.000 24.20 13.27 45.96 2.24
4620 4941 2.509512 TCTCTTCCAGAGATGGCCG 58.490 57.895 0.00 0.00 45.77 6.13
4647 4968 2.092968 CGGACCCTTCATTGATCTTGGA 60.093 50.000 0.00 0.00 0.00 3.53
4657 4978 4.014406 GACCAAATAAACGGACCCTTCAT 58.986 43.478 0.00 0.00 0.00 2.57
4661 4982 2.640826 TCTGACCAAATAAACGGACCCT 59.359 45.455 0.00 0.00 0.00 4.34
4663 4984 3.671716 ACTCTGACCAAATAAACGGACC 58.328 45.455 0.00 0.00 0.00 4.46
4719 5040 3.137533 GGCTCTAAAGACATCCATCAGC 58.862 50.000 0.00 0.00 0.00 4.26
4729 5050 1.831736 TGGTAGCTGGGCTCTAAAGAC 59.168 52.381 0.00 0.00 40.44 3.01
4820 5160 1.302752 TGCTCCCACAGTGTCATGC 60.303 57.895 0.00 0.00 0.00 4.06
4832 5172 2.794028 GGGCGGTACTACTGCTCCC 61.794 68.421 17.71 9.19 45.15 4.30
4838 5178 2.532843 TCAAAGAAGGGCGGTACTACT 58.467 47.619 0.00 0.00 0.00 2.57
4839 5179 3.323751 TTCAAAGAAGGGCGGTACTAC 57.676 47.619 0.00 0.00 0.00 2.73
4840 5180 3.869065 CATTCAAAGAAGGGCGGTACTA 58.131 45.455 0.00 0.00 0.00 1.82
4865 5205 2.363788 ACGTATCACAATGTCAGCGT 57.636 45.000 0.00 0.00 0.00 5.07
4866 5206 3.796717 ACATACGTATCACAATGTCAGCG 59.203 43.478 4.74 0.00 0.00 5.18
4932 5272 5.939883 TGACCTGATGTTAGAATTTCAGTGG 59.060 40.000 0.00 0.00 35.01 4.00
4946 5286 5.485353 TCCATTTAAGACTCTGACCTGATGT 59.515 40.000 0.00 0.00 0.00 3.06
4951 5291 6.627087 TCATTCCATTTAAGACTCTGACCT 57.373 37.500 0.00 0.00 0.00 3.85
4960 5300 5.271598 ACCAGCCATTCATTCCATTTAAGA 58.728 37.500 0.00 0.00 0.00 2.10
4963 5303 4.382901 GCAACCAGCCATTCATTCCATTTA 60.383 41.667 0.00 0.00 37.23 1.40
4964 5304 3.620472 GCAACCAGCCATTCATTCCATTT 60.620 43.478 0.00 0.00 37.23 2.32
4968 5555 3.746900 GCAACCAGCCATTCATTCC 57.253 52.632 0.00 0.00 37.23 3.01
5061 6513 2.802787 TATAGCAGAAGGAGAAGCGC 57.197 50.000 0.00 0.00 0.00 5.92
5062 6514 3.006323 ACCATATAGCAGAAGGAGAAGCG 59.994 47.826 0.00 0.00 0.00 4.68
5063 6515 4.615588 ACCATATAGCAGAAGGAGAAGC 57.384 45.455 0.00 0.00 0.00 3.86
5071 6523 5.428457 TCCTCCTGAAAACCATATAGCAGAA 59.572 40.000 0.00 0.00 0.00 3.02
5073 6525 5.296151 TCCTCCTGAAAACCATATAGCAG 57.704 43.478 0.00 0.00 0.00 4.24
5074 6526 5.437060 GTTCCTCCTGAAAACCATATAGCA 58.563 41.667 0.00 0.00 33.94 3.49
5075 6527 4.511826 CGTTCCTCCTGAAAACCATATAGC 59.488 45.833 0.00 0.00 33.94 2.97
5081 6533 0.841289 ACCGTTCCTCCTGAAAACCA 59.159 50.000 0.00 0.00 33.94 3.67
5082 6534 1.235724 CACCGTTCCTCCTGAAAACC 58.764 55.000 0.00 0.00 33.94 3.27
5083 6535 1.235724 CCACCGTTCCTCCTGAAAAC 58.764 55.000 0.00 0.00 33.94 2.43
5085 6537 1.057851 ACCCACCGTTCCTCCTGAAA 61.058 55.000 0.00 0.00 33.94 2.69
5087 6539 2.203182 ACCCACCGTTCCTCCTGA 59.797 61.111 0.00 0.00 0.00 3.86
5088 6540 2.214216 TCACCCACCGTTCCTCCTG 61.214 63.158 0.00 0.00 0.00 3.86
5109 7099 3.578282 CCTGGTGGAATAAAACCTTTGCT 59.422 43.478 0.00 0.00 37.36 3.91
5123 7113 8.553153 TGTATACATATTTTCTTTCCTGGTGGA 58.447 33.333 0.08 0.00 41.36 4.02
5124 7114 8.746052 TGTATACATATTTTCTTTCCTGGTGG 57.254 34.615 0.08 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.