Multiple sequence alignment - TraesCS5D01G492600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G492600 chr5D 100.000 8043 0 0 1 8043 525676485 525668443 0.000000e+00 14853.0
1 TraesCS5D01G492600 chr5D 95.037 544 26 1 1 543 406893922 406894465 0.000000e+00 854.0
2 TraesCS5D01G492600 chr5A 94.406 2860 109 20 4608 7428 651999253 651996406 0.000000e+00 4348.0
3 TraesCS5D01G492600 chr5A 92.966 1635 80 15 3011 4617 652000922 651999295 0.000000e+00 2350.0
4 TraesCS5D01G492600 chr5A 96.510 745 25 1 1838 2582 652002097 652001354 0.000000e+00 1230.0
5 TraesCS5D01G492600 chr5A 84.753 1174 91 38 668 1810 652003323 652002207 0.000000e+00 1096.0
6 TraesCS5D01G492600 chr5A 95.466 397 18 0 2617 3013 652001356 652000960 1.140000e-177 634.0
7 TraesCS5D01G492600 chr5A 88.073 109 12 1 7899 8007 651991890 651991783 2.360000e-25 128.0
8 TraesCS5D01G492600 chr5A 89.000 100 8 3 7437 7533 651995591 651995492 3.940000e-23 121.0
9 TraesCS5D01G492600 chr5A 100.000 31 0 0 1808 1838 652002150 652002120 3.140000e-04 58.4
10 TraesCS5D01G492600 chr5B 94.529 1974 61 15 2617 4576 660149450 660147510 0.000000e+00 3003.0
11 TraesCS5D01G492600 chr5B 98.409 1383 14 5 4669 6047 660147188 660145810 0.000000e+00 2425.0
12 TraesCS5D01G492600 chr5B 96.619 917 24 4 6030 6939 660145623 660144707 0.000000e+00 1515.0
13 TraesCS5D01G492600 chr5B 84.405 1135 80 35 727 1805 660151373 660150280 0.000000e+00 1026.0
14 TraesCS5D01G492600 chr5B 95.368 475 22 0 2108 2582 660149922 660149448 0.000000e+00 756.0
15 TraesCS5D01G492600 chr5B 92.647 476 28 7 6961 7433 660144575 660144104 0.000000e+00 678.0
16 TraesCS5D01G492600 chr5B 90.871 482 37 5 7468 7945 660143969 660143491 2.450000e-179 640.0
17 TraesCS5D01G492600 chr5B 89.474 247 23 2 1839 2083 660150161 660149916 7.840000e-80 309.0
18 TraesCS5D01G492600 chr5B 100.000 29 0 0 6935 6963 660144586 660144558 4.000000e-03 54.7
19 TraesCS5D01G492600 chr2D 96.691 544 18 0 1 544 113099280 113098737 0.000000e+00 905.0
20 TraesCS5D01G492600 chr2D 94.216 536 29 2 9 543 400155752 400156286 0.000000e+00 817.0
21 TraesCS5D01G492600 chr2D 93.578 545 33 2 1 543 59258788 59258244 0.000000e+00 811.0
22 TraesCS5D01G492600 chr2D 88.060 67 3 2 3429 3495 612722608 612722547 3.110000e-09 75.0
23 TraesCS5D01G492600 chr7D 95.221 544 25 1 1 543 444182656 444183199 0.000000e+00 859.0
24 TraesCS5D01G492600 chr7D 93.407 546 34 2 1 544 458808636 458809181 0.000000e+00 808.0
25 TraesCS5D01G492600 chr7D 86.207 87 6 2 3418 3498 5041157 5041243 1.110000e-13 89.8
26 TraesCS5D01G492600 chr7D 95.238 42 2 0 2578 2619 217945473 217945514 5.210000e-07 67.6
27 TraesCS5D01G492600 chr1B 94.301 544 30 1 1 543 649438935 649438392 0.000000e+00 832.0
28 TraesCS5D01G492600 chr1D 93.625 549 30 2 1 544 38420607 38420059 0.000000e+00 815.0
29 TraesCS5D01G492600 chr1D 97.500 40 1 0 2580 2619 414490414 414490453 1.450000e-07 69.4
30 TraesCS5D01G492600 chr6B 93.173 542 37 0 1 542 548107902 548108443 0.000000e+00 797.0
31 TraesCS5D01G492600 chr6D 88.372 86 6 4 3429 3511 305174073 305173989 5.140000e-17 100.0
32 TraesCS5D01G492600 chr6D 90.541 74 5 2 3427 3498 305173996 305174069 6.640000e-16 97.1
33 TraesCS5D01G492600 chr6D 86.667 75 5 2 3422 3495 446747253 446747323 2.410000e-10 78.7
34 TraesCS5D01G492600 chr1A 95.833 48 2 0 3421 3468 583127235 583127282 2.410000e-10 78.7
35 TraesCS5D01G492600 chr3B 100.000 41 0 0 2579 2619 492208423 492208383 8.660000e-10 76.8
36 TraesCS5D01G492600 chr3B 95.556 45 1 1 2579 2623 581910242 581910285 4.030000e-08 71.3
37 TraesCS5D01G492600 chr2B 100.000 40 0 0 2580 2619 311407764 311407725 3.110000e-09 75.0
38 TraesCS5D01G492600 chr2B 97.561 41 1 0 2579 2619 694267965 694267925 4.030000e-08 71.3
39 TraesCS5D01G492600 chr4D 85.915 71 7 2 3426 3493 211051596 211051526 1.120000e-08 73.1
40 TraesCS5D01G492600 chr7B 97.561 41 1 0 2578 2618 182133793 182133753 4.030000e-08 71.3
41 TraesCS5D01G492600 chr6A 95.349 43 1 1 2579 2620 608976473 608976515 5.210000e-07 67.6
42 TraesCS5D01G492600 chr6A 95.238 42 1 1 2580 2620 109132834 109132793 1.870000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G492600 chr5D 525668443 525676485 8042 True 14853.000 14853 100.000000 1 8043 1 chr5D.!!$R1 8042
1 TraesCS5D01G492600 chr5D 406893922 406894465 543 False 854.000 854 95.037000 1 543 1 chr5D.!!$F1 542
2 TraesCS5D01G492600 chr5A 651991783 652003323 11540 True 1245.675 4348 92.646750 668 8007 8 chr5A.!!$R1 7339
3 TraesCS5D01G492600 chr5B 660143491 660151373 7882 True 1156.300 3003 93.591333 727 7945 9 chr5B.!!$R1 7218
4 TraesCS5D01G492600 chr2D 113098737 113099280 543 True 905.000 905 96.691000 1 544 1 chr2D.!!$R2 543
5 TraesCS5D01G492600 chr2D 400155752 400156286 534 False 817.000 817 94.216000 9 543 1 chr2D.!!$F1 534
6 TraesCS5D01G492600 chr2D 59258244 59258788 544 True 811.000 811 93.578000 1 543 1 chr2D.!!$R1 542
7 TraesCS5D01G492600 chr7D 444182656 444183199 543 False 859.000 859 95.221000 1 543 1 chr7D.!!$F3 542
8 TraesCS5D01G492600 chr7D 458808636 458809181 545 False 808.000 808 93.407000 1 544 1 chr7D.!!$F4 543
9 TraesCS5D01G492600 chr1B 649438392 649438935 543 True 832.000 832 94.301000 1 543 1 chr1B.!!$R1 542
10 TraesCS5D01G492600 chr1D 38420059 38420607 548 True 815.000 815 93.625000 1 544 1 chr1D.!!$R1 543
11 TraesCS5D01G492600 chr6B 548107902 548108443 541 False 797.000 797 93.173000 1 542 1 chr6B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
741 749 0.106619 CTGGGCTACCTAGAGACGGT 60.107 60.000 0.00 0.0 37.76 4.83 F
978 1016 1.056660 TCCTGTCCTGTCCTGAAACC 58.943 55.000 0.00 0.0 0.00 3.27 F
2116 2274 1.069823 CAGATAGCAGGGCTCGTGATT 59.930 52.381 0.00 0.0 40.44 2.57 F
2590 2748 0.113776 TTGTGACCTACTCCCTCCGT 59.886 55.000 0.00 0.0 0.00 4.69 F
2591 2749 0.323178 TGTGACCTACTCCCTCCGTC 60.323 60.000 0.00 0.0 0.00 4.79 F
3563 3772 0.580578 GCTGTGCTCATGTATGCTCG 59.419 55.000 0.00 0.0 0.00 5.03 F
3797 4012 2.005220 GCTTCTGAGCGCTGATGAC 58.995 57.895 18.48 0.0 39.48 3.06 F
4379 4606 2.274437 CTTCTGTAGCGATGCACATGT 58.726 47.619 0.00 0.0 0.00 3.21 F
5293 5755 3.191371 GTGATAGACCTTGTTTTGGGCAG 59.809 47.826 0.00 0.0 34.31 4.85 F
6328 7002 1.374252 GAAGCTGCGTTTCGAGGGA 60.374 57.895 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2259 0.254178 ATCAAATCACGAGCCCTGCT 59.746 50.000 0.00 0.0 43.88 4.24 R
2580 2738 1.073098 ATTTTTGGGACGGAGGGAGT 58.927 50.000 0.00 0.0 0.00 3.85 R
3224 3424 2.030027 TCCACTGAGGGTTGAGTGAT 57.970 50.000 0.00 0.0 41.90 3.06 R
4131 4346 1.135094 CCTATCACCACCAGCTCCAT 58.865 55.000 0.00 0.0 0.00 3.41 R
4166 4381 1.938585 TACTTCTGGTGGAGGAGTGG 58.061 55.000 0.00 0.0 41.16 4.00 R
4818 5280 4.051922 CGCCAACAAGCTACTTAGGATAG 58.948 47.826 0.00 0.0 0.00 2.08 R
5293 5755 4.636206 CAGGTTGAGAAATTACCTACTGCC 59.364 45.833 0.00 0.0 0.00 4.85 R
6282 6956 1.372087 GGATGGTTTCAGGAGCTGCG 61.372 60.000 0.00 0.0 0.00 5.18 R
6628 7302 1.213296 GCTAAGGAATGGACTGGGGA 58.787 55.000 0.00 0.0 0.00 4.81 R
8019 12909 0.308376 GCGAGCCACGGTTTTACAAA 59.692 50.000 3.29 0.0 42.83 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.458006 GAAGCCGCCGAACACAAAGG 62.458 60.000 0.00 0.00 0.00 3.11
233 235 2.231215 AGCTGTATGTCTGCGGATTC 57.769 50.000 0.00 0.00 44.03 2.52
447 454 5.907421 ACCCTCCGGTTTATATAGATACCA 58.093 41.667 0.00 0.00 40.58 3.25
520 528 2.056577 CGGACACCTAAACTTGTCGTC 58.943 52.381 0.00 0.00 42.67 4.20
544 552 2.951642 CGTATACGGGAGTCCTAACCAA 59.048 50.000 17.61 0.00 45.66 3.67
545 553 3.004106 CGTATACGGGAGTCCTAACCAAG 59.996 52.174 17.61 0.00 45.66 3.61
546 554 2.610438 TACGGGAGTCCTAACCAAGT 57.390 50.000 9.58 1.42 45.66 3.16
547 555 1.264295 ACGGGAGTCCTAACCAAGTC 58.736 55.000 9.58 0.00 40.62 3.01
548 556 1.263356 CGGGAGTCCTAACCAAGTCA 58.737 55.000 9.58 0.00 0.00 3.41
549 557 1.621814 CGGGAGTCCTAACCAAGTCAA 59.378 52.381 9.58 0.00 0.00 3.18
550 558 2.038033 CGGGAGTCCTAACCAAGTCAAA 59.962 50.000 9.58 0.00 0.00 2.69
551 559 3.495453 CGGGAGTCCTAACCAAGTCAAAA 60.495 47.826 9.58 0.00 0.00 2.44
552 560 3.819337 GGGAGTCCTAACCAAGTCAAAAC 59.181 47.826 9.58 0.00 0.00 2.43
553 561 3.819337 GGAGTCCTAACCAAGTCAAAACC 59.181 47.826 0.41 0.00 0.00 3.27
554 562 3.473625 AGTCCTAACCAAGTCAAAACCG 58.526 45.455 0.00 0.00 0.00 4.44
555 563 3.135167 AGTCCTAACCAAGTCAAAACCGA 59.865 43.478 0.00 0.00 0.00 4.69
556 564 3.497262 GTCCTAACCAAGTCAAAACCGAG 59.503 47.826 0.00 0.00 0.00 4.63
557 565 3.388676 TCCTAACCAAGTCAAAACCGAGA 59.611 43.478 0.00 0.00 0.00 4.04
558 566 4.131596 CCTAACCAAGTCAAAACCGAGAA 58.868 43.478 0.00 0.00 0.00 2.87
559 567 4.577283 CCTAACCAAGTCAAAACCGAGAAA 59.423 41.667 0.00 0.00 0.00 2.52
560 568 5.240844 CCTAACCAAGTCAAAACCGAGAAAT 59.759 40.000 0.00 0.00 0.00 2.17
561 569 6.428771 CCTAACCAAGTCAAAACCGAGAAATA 59.571 38.462 0.00 0.00 0.00 1.40
562 570 6.702716 AACCAAGTCAAAACCGAGAAATAA 57.297 33.333 0.00 0.00 0.00 1.40
563 571 6.068473 ACCAAGTCAAAACCGAGAAATAAC 57.932 37.500 0.00 0.00 0.00 1.89
564 572 5.591067 ACCAAGTCAAAACCGAGAAATAACA 59.409 36.000 0.00 0.00 0.00 2.41
565 573 6.095720 ACCAAGTCAAAACCGAGAAATAACAA 59.904 34.615 0.00 0.00 0.00 2.83
566 574 6.975772 CCAAGTCAAAACCGAGAAATAACAAA 59.024 34.615 0.00 0.00 0.00 2.83
567 575 7.489757 CCAAGTCAAAACCGAGAAATAACAAAA 59.510 33.333 0.00 0.00 0.00 2.44
568 576 8.865001 CAAGTCAAAACCGAGAAATAACAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
586 594 4.746535 AAAAACCCGATGAAAACCAAGT 57.253 36.364 0.00 0.00 0.00 3.16
587 595 4.316205 AAAACCCGATGAAAACCAAGTC 57.684 40.909 0.00 0.00 0.00 3.01
588 596 2.649531 ACCCGATGAAAACCAAGTCA 57.350 45.000 0.00 0.00 0.00 3.41
589 597 2.938838 ACCCGATGAAAACCAAGTCAA 58.061 42.857 0.00 0.00 0.00 3.18
590 598 3.292460 ACCCGATGAAAACCAAGTCAAA 58.708 40.909 0.00 0.00 0.00 2.69
591 599 3.702045 ACCCGATGAAAACCAAGTCAAAA 59.298 39.130 0.00 0.00 0.00 2.44
592 600 4.048504 CCCGATGAAAACCAAGTCAAAAC 58.951 43.478 0.00 0.00 0.00 2.43
593 601 4.202111 CCCGATGAAAACCAAGTCAAAACT 60.202 41.667 0.00 0.00 37.32 2.66
594 602 4.976116 CCGATGAAAACCAAGTCAAAACTC 59.024 41.667 0.00 0.00 33.48 3.01
595 603 4.976116 CGATGAAAACCAAGTCAAAACTCC 59.024 41.667 0.00 0.00 33.48 3.85
596 604 5.221048 CGATGAAAACCAAGTCAAAACTCCT 60.221 40.000 0.00 0.00 33.48 3.69
597 605 5.576447 TGAAAACCAAGTCAAAACTCCTC 57.424 39.130 0.00 0.00 33.48 3.71
598 606 5.013547 TGAAAACCAAGTCAAAACTCCTCA 58.986 37.500 0.00 0.00 33.48 3.86
599 607 5.656416 TGAAAACCAAGTCAAAACTCCTCAT 59.344 36.000 0.00 0.00 33.48 2.90
600 608 6.831353 TGAAAACCAAGTCAAAACTCCTCATA 59.169 34.615 0.00 0.00 33.48 2.15
601 609 7.340743 TGAAAACCAAGTCAAAACTCCTCATAA 59.659 33.333 0.00 0.00 33.48 1.90
602 610 7.654022 AAACCAAGTCAAAACTCCTCATAAA 57.346 32.000 0.00 0.00 33.48 1.40
603 611 7.654022 AACCAAGTCAAAACTCCTCATAAAA 57.346 32.000 0.00 0.00 33.48 1.52
604 612 7.654022 ACCAAGTCAAAACTCCTCATAAAAA 57.346 32.000 0.00 0.00 33.48 1.94
605 613 7.716612 ACCAAGTCAAAACTCCTCATAAAAAG 58.283 34.615 0.00 0.00 33.48 2.27
606 614 7.342026 ACCAAGTCAAAACTCCTCATAAAAAGT 59.658 33.333 0.00 0.00 33.48 2.66
607 615 7.862873 CCAAGTCAAAACTCCTCATAAAAAGTC 59.137 37.037 0.00 0.00 33.48 3.01
608 616 8.405531 CAAGTCAAAACTCCTCATAAAAAGTCA 58.594 33.333 0.00 0.00 33.48 3.41
609 617 7.931275 AGTCAAAACTCCTCATAAAAAGTCAC 58.069 34.615 0.00 0.00 0.00 3.67
610 618 7.556275 AGTCAAAACTCCTCATAAAAAGTCACA 59.444 33.333 0.00 0.00 0.00 3.58
611 619 8.188139 GTCAAAACTCCTCATAAAAAGTCACAA 58.812 33.333 0.00 0.00 0.00 3.33
612 620 8.744652 TCAAAACTCCTCATAAAAAGTCACAAA 58.255 29.630 0.00 0.00 0.00 2.83
613 621 9.533253 CAAAACTCCTCATAAAAAGTCACAAAT 57.467 29.630 0.00 0.00 0.00 2.32
615 623 9.750125 AAACTCCTCATAAAAAGTCACAAATTC 57.250 29.630 0.00 0.00 0.00 2.17
616 624 8.697507 ACTCCTCATAAAAAGTCACAAATTCT 57.302 30.769 0.00 0.00 0.00 2.40
617 625 8.787852 ACTCCTCATAAAAAGTCACAAATTCTC 58.212 33.333 0.00 0.00 0.00 2.87
618 626 7.806690 TCCTCATAAAAAGTCACAAATTCTCG 58.193 34.615 0.00 0.00 0.00 4.04
619 627 7.659799 TCCTCATAAAAAGTCACAAATTCTCGA 59.340 33.333 0.00 0.00 0.00 4.04
620 628 7.959651 CCTCATAAAAAGTCACAAATTCTCGAG 59.040 37.037 5.93 5.93 0.00 4.04
621 629 7.298122 TCATAAAAAGTCACAAATTCTCGAGC 58.702 34.615 7.81 0.00 0.00 5.03
622 630 4.489679 AAAAGTCACAAATTCTCGAGCC 57.510 40.909 7.81 0.00 0.00 4.70
623 631 2.839486 AGTCACAAATTCTCGAGCCA 57.161 45.000 7.81 0.00 0.00 4.75
624 632 3.340814 AGTCACAAATTCTCGAGCCAT 57.659 42.857 7.81 0.00 0.00 4.40
625 633 3.265791 AGTCACAAATTCTCGAGCCATC 58.734 45.455 7.81 0.00 0.00 3.51
626 634 3.002791 GTCACAAATTCTCGAGCCATCA 58.997 45.455 7.81 0.00 0.00 3.07
627 635 3.436704 GTCACAAATTCTCGAGCCATCAA 59.563 43.478 7.81 0.00 0.00 2.57
628 636 4.071423 TCACAAATTCTCGAGCCATCAAA 58.929 39.130 7.81 0.00 0.00 2.69
629 637 4.154737 TCACAAATTCTCGAGCCATCAAAG 59.845 41.667 7.81 0.00 0.00 2.77
630 638 4.154737 CACAAATTCTCGAGCCATCAAAGA 59.845 41.667 7.81 0.00 0.00 2.52
631 639 4.394300 ACAAATTCTCGAGCCATCAAAGAG 59.606 41.667 7.81 0.00 0.00 2.85
632 640 2.680312 TTCTCGAGCCATCAAAGAGG 57.320 50.000 7.81 0.00 0.00 3.69
633 641 1.852633 TCTCGAGCCATCAAAGAGGA 58.147 50.000 7.81 0.00 0.00 3.71
634 642 2.179427 TCTCGAGCCATCAAAGAGGAA 58.821 47.619 7.81 0.00 0.00 3.36
635 643 2.567169 TCTCGAGCCATCAAAGAGGAAA 59.433 45.455 7.81 0.00 0.00 3.13
636 644 3.198635 TCTCGAGCCATCAAAGAGGAAAT 59.801 43.478 7.81 0.00 0.00 2.17
637 645 4.405680 TCTCGAGCCATCAAAGAGGAAATA 59.594 41.667 7.81 0.00 0.00 1.40
638 646 5.070981 TCTCGAGCCATCAAAGAGGAAATAT 59.929 40.000 7.81 0.00 0.00 1.28
639 647 5.300752 TCGAGCCATCAAAGAGGAAATATC 58.699 41.667 0.00 0.00 0.00 1.63
640 648 5.059161 CGAGCCATCAAAGAGGAAATATCA 58.941 41.667 0.00 0.00 0.00 2.15
641 649 5.049818 CGAGCCATCAAAGAGGAAATATCAC 60.050 44.000 0.00 0.00 0.00 3.06
642 650 5.136105 AGCCATCAAAGAGGAAATATCACC 58.864 41.667 0.00 0.00 0.00 4.02
643 651 4.279420 GCCATCAAAGAGGAAATATCACCC 59.721 45.833 0.00 0.00 0.00 4.61
644 652 5.699143 CCATCAAAGAGGAAATATCACCCT 58.301 41.667 0.00 0.00 0.00 4.34
645 653 5.767168 CCATCAAAGAGGAAATATCACCCTC 59.233 44.000 0.00 0.00 45.16 4.30
650 658 2.640332 GAGGAAATATCACCCTCTCCCC 59.360 54.545 0.00 0.00 42.36 4.81
651 659 1.705745 GGAAATATCACCCTCTCCCCC 59.294 57.143 0.00 0.00 0.00 5.40
652 660 2.418669 GAAATATCACCCTCTCCCCCA 58.581 52.381 0.00 0.00 0.00 4.96
653 661 2.605825 AATATCACCCTCTCCCCCAA 57.394 50.000 0.00 0.00 0.00 4.12
654 662 2.605825 ATATCACCCTCTCCCCCAAA 57.394 50.000 0.00 0.00 0.00 3.28
655 663 1.591768 TATCACCCTCTCCCCCAAAC 58.408 55.000 0.00 0.00 0.00 2.93
656 664 0.477597 ATCACCCTCTCCCCCAAACA 60.478 55.000 0.00 0.00 0.00 2.83
657 665 1.074951 CACCCTCTCCCCCAAACAC 59.925 63.158 0.00 0.00 0.00 3.32
658 666 1.386772 ACCCTCTCCCCCAAACACA 60.387 57.895 0.00 0.00 0.00 3.72
659 667 0.776080 ACCCTCTCCCCCAAACACAT 60.776 55.000 0.00 0.00 0.00 3.21
660 668 1.295020 CCCTCTCCCCCAAACACATA 58.705 55.000 0.00 0.00 0.00 2.29
661 669 1.212935 CCCTCTCCCCCAAACACATAG 59.787 57.143 0.00 0.00 0.00 2.23
662 670 2.196595 CCTCTCCCCCAAACACATAGA 58.803 52.381 0.00 0.00 0.00 1.98
663 671 2.576191 CCTCTCCCCCAAACACATAGAA 59.424 50.000 0.00 0.00 0.00 2.10
664 672 3.370953 CCTCTCCCCCAAACACATAGAAG 60.371 52.174 0.00 0.00 0.00 2.85
665 673 2.576191 TCTCCCCCAAACACATAGAAGG 59.424 50.000 0.00 0.00 0.00 3.46
666 674 1.638589 TCCCCCAAACACATAGAAGGG 59.361 52.381 0.00 0.00 36.04 3.95
701 709 1.451387 CCATAGGCCGGTGGTTGAC 60.451 63.158 18.30 0.00 0.00 3.18
741 749 0.106619 CTGGGCTACCTAGAGACGGT 60.107 60.000 0.00 0.00 37.76 4.83
755 763 4.969484 AGAGACGGTTAGGTTTCAACAAT 58.031 39.130 0.00 0.00 0.00 2.71
758 766 4.514066 AGACGGTTAGGTTTCAACAATGTC 59.486 41.667 0.00 0.00 0.00 3.06
759 767 4.200874 ACGGTTAGGTTTCAACAATGTCA 58.799 39.130 0.00 0.00 0.00 3.58
762 770 5.856455 CGGTTAGGTTTCAACAATGTCATTC 59.144 40.000 0.00 0.00 0.00 2.67
765 773 7.378181 GTTAGGTTTCAACAATGTCATTCCAT 58.622 34.615 0.00 0.00 0.00 3.41
803 811 5.248640 CAATCACCAGACACCATCTACTTT 58.751 41.667 0.00 0.00 35.15 2.66
805 813 3.056821 TCACCAGACACCATCTACTTTCG 60.057 47.826 0.00 0.00 35.15 3.46
810 818 5.980116 CCAGACACCATCTACTTTCGATTAG 59.020 44.000 0.00 0.00 35.15 1.73
854 866 9.339850 TCATGACATCTACTACTACTTCTAACC 57.660 37.037 0.00 0.00 0.00 2.85
855 867 9.344772 CATGACATCTACTACTACTTCTAACCT 57.655 37.037 0.00 0.00 0.00 3.50
885 900 3.011119 TGTTCCTACAACTGCGTTTTGT 58.989 40.909 3.28 3.28 40.34 2.83
902 917 5.121768 CGTTTTGTAAGTGAACCATAGAGGG 59.878 44.000 0.00 0.00 43.89 4.30
908 923 3.108376 AGTGAACCATAGAGGGACTTCC 58.892 50.000 0.00 0.00 41.55 3.46
931 946 2.357637 CTCGCAAGTGAACCAAAAAGGA 59.642 45.455 0.00 0.00 38.97 3.36
932 947 2.755655 TCGCAAGTGAACCAAAAAGGAA 59.244 40.909 0.00 0.00 38.97 3.36
933 948 2.857748 CGCAAGTGAACCAAAAAGGAAC 59.142 45.455 0.00 0.00 41.22 3.62
934 949 5.643694 TCGCAAGTGAACCAAAAAGGAACT 61.644 41.667 0.00 0.00 38.97 3.01
936 951 8.761811 TCGCAAGTGAACCAAAAAGGAACTTC 62.762 42.308 0.00 0.00 44.94 3.01
978 1016 1.056660 TCCTGTCCTGTCCTGAAACC 58.943 55.000 0.00 0.00 0.00 3.27
1040 1078 4.966247 GAGATCCCTCCCTCCCTC 57.034 66.667 0.00 0.00 33.30 4.30
1041 1079 1.157513 GAGATCCCTCCCTCCCTCC 59.842 68.421 0.00 0.00 33.30 4.30
1042 1080 2.205749 GATCCCTCCCTCCCTCCC 59.794 72.222 0.00 0.00 0.00 4.30
1043 1081 2.628465 ATCCCTCCCTCCCTCCCA 60.628 66.667 0.00 0.00 0.00 4.37
1044 1082 2.974435 GATCCCTCCCTCCCTCCCAC 62.974 70.000 0.00 0.00 0.00 4.61
1045 1083 4.825679 CCCTCCCTCCCTCCCACC 62.826 77.778 0.00 0.00 0.00 4.61
1046 1084 4.825679 CCTCCCTCCCTCCCACCC 62.826 77.778 0.00 0.00 0.00 4.61
1047 1085 4.024984 CTCCCTCCCTCCCACCCA 62.025 72.222 0.00 0.00 0.00 4.51
1048 1086 4.024984 TCCCTCCCTCCCACCCAG 62.025 72.222 0.00 0.00 0.00 4.45
1049 1087 4.354943 CCCTCCCTCCCACCCAGT 62.355 72.222 0.00 0.00 0.00 4.00
1050 1088 2.689034 CCTCCCTCCCACCCAGTC 60.689 72.222 0.00 0.00 0.00 3.51
1051 1089 2.452114 CTCCCTCCCACCCAGTCT 59.548 66.667 0.00 0.00 0.00 3.24
1052 1090 1.687493 CTCCCTCCCACCCAGTCTC 60.687 68.421 0.00 0.00 0.00 3.36
1053 1091 3.077556 CCCTCCCACCCAGTCTCG 61.078 72.222 0.00 0.00 0.00 4.04
1257 1313 1.494721 TGGTATGGAATGGAAGCCCTC 59.505 52.381 0.00 0.00 0.00 4.30
1362 1418 5.305585 GGTCTGATTTGGTTGTGTTCTAGA 58.694 41.667 0.00 0.00 0.00 2.43
1363 1419 5.179555 GGTCTGATTTGGTTGTGTTCTAGAC 59.820 44.000 0.00 0.00 0.00 2.59
1364 1420 4.988540 TCTGATTTGGTTGTGTTCTAGACG 59.011 41.667 0.00 0.00 0.00 4.18
1365 1421 4.699637 TGATTTGGTTGTGTTCTAGACGT 58.300 39.130 0.00 0.00 0.00 4.34
1366 1422 4.748102 TGATTTGGTTGTGTTCTAGACGTC 59.252 41.667 7.70 7.70 0.00 4.34
1367 1423 4.395959 TTTGGTTGTGTTCTAGACGTCT 57.604 40.909 23.66 23.66 0.00 4.18
1383 1439 1.797025 GTCTAGTGGCAGCTCGTTTT 58.203 50.000 0.00 0.00 0.00 2.43
1455 1515 2.463752 ACTGGGTTCTGCCGATTAGTA 58.536 47.619 0.00 0.00 38.44 1.82
1480 1540 5.415701 GGAGATTCTGCTGAATTTGGTTGTA 59.584 40.000 18.52 0.00 42.43 2.41
1538 1598 2.559668 TGACCTTGGATAGTTTCGTCGT 59.440 45.455 0.00 0.00 0.00 4.34
1539 1599 3.006110 TGACCTTGGATAGTTTCGTCGTT 59.994 43.478 0.00 0.00 0.00 3.85
1567 1627 4.399303 GTGGGGAAATTGATAGTTGGAGTG 59.601 45.833 0.00 0.00 0.00 3.51
1568 1628 4.044065 TGGGGAAATTGATAGTTGGAGTGT 59.956 41.667 0.00 0.00 0.00 3.55
1707 1774 5.480073 GGAGCTCTTCCACATCAGATAGTAT 59.520 44.000 14.64 0.00 46.01 2.12
1709 1776 6.073981 AGCTCTTCCACATCAGATAGTATGA 58.926 40.000 0.00 0.00 0.00 2.15
1735 1806 3.959495 ATTTGGTGTCATAGCTGGGAT 57.041 42.857 0.00 0.00 0.00 3.85
1738 1809 5.387113 TTTGGTGTCATAGCTGGGATTAT 57.613 39.130 0.00 0.00 0.00 1.28
1768 1840 9.239551 GTAAGGTTATCCTGTTTTCCAGTTTAT 57.760 33.333 0.00 0.00 44.35 1.40
1769 1841 8.721133 AAGGTTATCCTGTTTTCCAGTTTATT 57.279 30.769 0.00 0.00 44.35 1.40
1770 1842 9.816787 AAGGTTATCCTGTTTTCCAGTTTATTA 57.183 29.630 0.00 0.00 44.35 0.98
1855 2011 4.660789 ATTTCTGCAGCATGGAAATACC 57.339 40.909 17.06 0.00 35.94 2.73
1900 2056 6.427853 TGACAGGAGTTACACATCAAAAGATG 59.572 38.462 4.06 4.06 38.46 2.90
1936 2092 7.782242 TGTTTTGCAGTTTAATTCTTAATGCG 58.218 30.769 0.00 0.00 35.12 4.73
1940 2096 5.182190 TGCAGTTTAATTCTTAATGCGTGGA 59.818 36.000 0.00 0.00 35.12 4.02
2116 2274 1.069823 CAGATAGCAGGGCTCGTGATT 59.930 52.381 0.00 0.00 40.44 2.57
2122 2280 1.474077 GCAGGGCTCGTGATTTGATTT 59.526 47.619 0.00 0.00 0.00 2.17
2123 2281 2.733227 GCAGGGCTCGTGATTTGATTTG 60.733 50.000 0.00 0.00 0.00 2.32
2344 2502 5.346181 AGGTTATTGCTCTTGAGGTAGTC 57.654 43.478 0.00 0.00 0.00 2.59
2514 2672 3.054802 TCTTCAAGGCCTTGGATCTCTTC 60.055 47.826 38.60 0.00 40.78 2.87
2579 2737 4.013728 TGTACTTTTGCAAGTTGTGACCT 58.986 39.130 4.48 0.00 40.66 3.85
2580 2738 5.186942 TGTACTTTTGCAAGTTGTGACCTA 58.813 37.500 4.48 0.00 40.66 3.08
2581 2739 4.632538 ACTTTTGCAAGTTGTGACCTAC 57.367 40.909 4.48 0.00 40.66 3.18
2582 2740 4.270008 ACTTTTGCAAGTTGTGACCTACT 58.730 39.130 4.48 0.00 40.66 2.57
2583 2741 4.335594 ACTTTTGCAAGTTGTGACCTACTC 59.664 41.667 4.48 0.00 40.66 2.59
2584 2742 2.543777 TGCAAGTTGTGACCTACTCC 57.456 50.000 4.48 0.00 0.00 3.85
2585 2743 1.071699 TGCAAGTTGTGACCTACTCCC 59.928 52.381 4.48 0.00 0.00 4.30
2586 2744 1.348036 GCAAGTTGTGACCTACTCCCT 59.652 52.381 4.48 0.00 0.00 4.20
2587 2745 2.613223 GCAAGTTGTGACCTACTCCCTC 60.613 54.545 4.48 0.00 0.00 4.30
2588 2746 1.939980 AGTTGTGACCTACTCCCTCC 58.060 55.000 0.00 0.00 0.00 4.30
2589 2747 0.531200 GTTGTGACCTACTCCCTCCG 59.469 60.000 0.00 0.00 0.00 4.63
2590 2748 0.113776 TTGTGACCTACTCCCTCCGT 59.886 55.000 0.00 0.00 0.00 4.69
2591 2749 0.323178 TGTGACCTACTCCCTCCGTC 60.323 60.000 0.00 0.00 0.00 4.79
2592 2750 1.036481 GTGACCTACTCCCTCCGTCC 61.036 65.000 0.00 0.00 0.00 4.79
2593 2751 1.455402 GACCTACTCCCTCCGTCCC 60.455 68.421 0.00 0.00 0.00 4.46
2594 2752 2.220786 GACCTACTCCCTCCGTCCCA 62.221 65.000 0.00 0.00 0.00 4.37
2595 2753 1.001248 CCTACTCCCTCCGTCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
2596 2754 0.616679 CCTACTCCCTCCGTCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
2597 2755 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2598 2756 1.626825 CTACTCCCTCCGTCCCAAAAA 59.373 52.381 0.00 0.00 0.00 1.94
2599 2757 1.073098 ACTCCCTCCGTCCCAAAAAT 58.927 50.000 0.00 0.00 0.00 1.82
2600 2758 2.271777 ACTCCCTCCGTCCCAAAAATA 58.728 47.619 0.00 0.00 0.00 1.40
2601 2759 2.645797 ACTCCCTCCGTCCCAAAAATAA 59.354 45.455 0.00 0.00 0.00 1.40
2602 2760 3.279434 CTCCCTCCGTCCCAAAAATAAG 58.721 50.000 0.00 0.00 0.00 1.73
2603 2761 2.645797 TCCCTCCGTCCCAAAAATAAGT 59.354 45.455 0.00 0.00 0.00 2.24
2604 2762 2.752903 CCCTCCGTCCCAAAAATAAGTG 59.247 50.000 0.00 0.00 0.00 3.16
2605 2763 3.418047 CCTCCGTCCCAAAAATAAGTGT 58.582 45.455 0.00 0.00 0.00 3.55
2606 2764 3.439129 CCTCCGTCCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
2607 2765 4.324267 CTCCGTCCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
2608 2766 4.320870 TCCGTCCCAAAAATAAGTGTCTC 58.679 43.478 0.00 0.00 0.00 3.36
2609 2767 4.069304 CCGTCCCAAAAATAAGTGTCTCA 58.931 43.478 0.00 0.00 0.00 3.27
2610 2768 4.517453 CCGTCCCAAAAATAAGTGTCTCAA 59.483 41.667 0.00 0.00 0.00 3.02
2611 2769 5.449304 CGTCCCAAAAATAAGTGTCTCAAC 58.551 41.667 0.00 0.00 0.00 3.18
2612 2770 5.238650 CGTCCCAAAAATAAGTGTCTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
2613 2771 6.238648 CGTCCCAAAAATAAGTGTCTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
2614 2772 7.489160 GTCCCAAAAATAAGTGTCTCAACTTT 58.511 34.615 0.00 0.00 40.77 2.66
2615 2773 7.435192 GTCCCAAAAATAAGTGTCTCAACTTTG 59.565 37.037 0.00 0.00 40.77 2.77
2709 2867 5.897824 TCGTTTATCTAGAAGACCAGGGATT 59.102 40.000 0.00 0.00 0.00 3.01
2721 2879 5.281314 AGACCAGGGATTAGTTGACTATGT 58.719 41.667 0.00 0.00 0.00 2.29
2735 2893 7.783042 AGTTGACTATGTTCTGTTATACTCCC 58.217 38.462 0.00 0.00 0.00 4.30
2736 2894 7.399191 AGTTGACTATGTTCTGTTATACTCCCA 59.601 37.037 0.00 0.00 0.00 4.37
2750 2908 7.287005 TGTTATACTCCCACACTGGAACTATAG 59.713 40.741 0.00 0.00 40.96 1.31
2838 2996 1.132495 AGTCCCCTGGTTTAGTCCACT 60.132 52.381 0.00 0.00 33.55 4.00
2839 2997 1.703513 GTCCCCTGGTTTAGTCCACTT 59.296 52.381 0.00 0.00 33.55 3.16
3186 3386 6.693315 ATGGTGTTTTATCTACCGGATTTG 57.307 37.500 9.46 0.00 37.29 2.32
3495 3703 3.006537 ACGATCTTATATTGTGGGACGGG 59.993 47.826 0.00 0.00 0.00 5.28
3498 3706 1.772453 CTTATATTGTGGGACGGGGGT 59.228 52.381 0.00 0.00 0.00 4.95
3501 3710 1.843462 TATTGTGGGACGGGGGTGTG 61.843 60.000 0.00 0.00 0.00 3.82
3563 3772 0.580578 GCTGTGCTCATGTATGCTCG 59.419 55.000 0.00 0.00 0.00 5.03
3631 3846 6.940298 AGCTTTGTTGAACTGCCTAGTATAAA 59.060 34.615 0.00 0.00 35.69 1.40
3640 3855 6.683974 ACTGCCTAGTATAAAACATTGCTG 57.316 37.500 0.00 0.00 34.74 4.41
3658 3873 6.587206 TTGCTGTATGATGTTTCAAATCCA 57.413 33.333 0.00 0.00 34.96 3.41
3659 3874 6.587206 TGCTGTATGATGTTTCAAATCCAA 57.413 33.333 0.00 0.00 34.96 3.53
3662 3877 7.093858 TGCTGTATGATGTTTCAAATCCAATGA 60.094 33.333 0.00 0.00 34.96 2.57
3797 4012 2.005220 GCTTCTGAGCGCTGATGAC 58.995 57.895 18.48 0.00 39.48 3.06
3856 4071 4.118410 GTTCCTATCTGTCACATCTGCAG 58.882 47.826 7.63 7.63 0.00 4.41
4195 4410 3.327757 TCCACCAGAAGTAACTTGCTGAT 59.672 43.478 0.00 0.00 0.00 2.90
4379 4606 2.274437 CTTCTGTAGCGATGCACATGT 58.726 47.619 0.00 0.00 0.00 3.21
4588 4815 9.357161 AGTAATACTACCTCTGTCCAGAATTAG 57.643 37.037 0.00 4.80 36.94 1.73
4594 4821 4.593206 ACCTCTGTCCAGAATTAGTTGTCA 59.407 41.667 0.00 0.00 36.94 3.58
4597 4824 6.071334 CCTCTGTCCAGAATTAGTTGTCACTA 60.071 42.308 0.00 0.00 36.94 2.74
4602 4829 8.783093 TGTCCAGAATTAGTTGTCACTAAAATG 58.217 33.333 0.00 0.16 46.45 2.32
4626 4904 5.393027 GGATGTATTTTGCACGTCAATCCTT 60.393 40.000 0.00 0.00 34.26 3.36
4818 5280 4.856509 AGTTATCCAAGCCCCTTTTACTC 58.143 43.478 0.00 0.00 0.00 2.59
5293 5755 3.191371 GTGATAGACCTTGTTTTGGGCAG 59.809 47.826 0.00 0.00 34.31 4.85
5381 5843 8.768501 TGTAATAGTCCATCATCAGTTAGAGT 57.231 34.615 0.00 0.00 0.00 3.24
5888 6351 5.193679 ACTATCTTTGCCCCATTACTCAAC 58.806 41.667 0.00 0.00 0.00 3.18
6282 6956 5.921962 ACTATTCCCTTTTCAAATCCTGC 57.078 39.130 0.00 0.00 0.00 4.85
6328 7002 1.374252 GAAGCTGCGTTTCGAGGGA 60.374 57.895 0.00 0.00 0.00 4.20
6511 7185 1.404717 CCAGTCTCGGACATGGACTTG 60.405 57.143 0.00 0.00 38.12 3.16
6628 7302 0.824109 TTCTCGCTGGGATGAACGAT 59.176 50.000 0.00 0.00 33.53 3.73
6640 7314 1.285280 TGAACGATCCCCAGTCCATT 58.715 50.000 0.00 0.00 0.00 3.16
6641 7315 1.209504 TGAACGATCCCCAGTCCATTC 59.790 52.381 0.00 0.00 0.00 2.67
6666 7342 1.000771 CTCCCGAGTCTGTCTCCCA 60.001 63.158 0.00 0.00 39.84 4.37
6678 7354 0.521735 GTCTCCCAACGGTTCATTGC 59.478 55.000 0.00 0.00 0.00 3.56
7085 7903 9.961265 AACATAAGAACATGATAAGATTGCATG 57.039 29.630 0.00 0.00 43.70 4.06
7111 7929 5.061684 GCAAAATACAGGATTGTAAAACCGC 59.938 40.000 0.00 0.00 44.57 5.68
7138 7957 9.474920 TGGATTTGTAGAATTTGTGTTTGATTC 57.525 29.630 0.00 0.00 0.00 2.52
7150 7970 6.325919 TGTGTTTGATTCGCTAGGAAAAAT 57.674 33.333 0.00 0.00 38.36 1.82
7182 8003 7.859325 TGCTATAAAACAGTCAAATAGGGTC 57.141 36.000 0.00 0.00 0.00 4.46
7359 8192 7.546250 AGTGGATGAATAGTGTAATCTAGGG 57.454 40.000 0.00 0.00 0.00 3.53
7360 8193 6.014156 AGTGGATGAATAGTGTAATCTAGGGC 60.014 42.308 0.00 0.00 0.00 5.19
7361 8194 5.248477 TGGATGAATAGTGTAATCTAGGGCC 59.752 44.000 0.00 0.00 0.00 5.80
7362 8195 5.485708 GGATGAATAGTGTAATCTAGGGCCT 59.514 44.000 12.58 12.58 0.00 5.19
7363 8196 6.668283 GGATGAATAGTGTAATCTAGGGCCTA 59.332 42.308 13.73 13.73 0.00 3.93
7364 8197 7.345914 GGATGAATAGTGTAATCTAGGGCCTAT 59.654 40.741 14.95 1.54 0.00 2.57
7445 9078 3.797256 TGTCGCCGGTTTATTTTGTTTTG 59.203 39.130 1.90 0.00 0.00 2.44
7446 9079 4.043073 GTCGCCGGTTTATTTTGTTTTGA 58.957 39.130 1.90 0.00 0.00 2.69
7447 9080 4.682401 GTCGCCGGTTTATTTTGTTTTGAT 59.318 37.500 1.90 0.00 0.00 2.57
7448 9081 5.857517 GTCGCCGGTTTATTTTGTTTTGATA 59.142 36.000 1.90 0.00 0.00 2.15
7449 9082 6.362820 GTCGCCGGTTTATTTTGTTTTGATAA 59.637 34.615 1.90 0.00 0.00 1.75
7450 9083 6.362820 TCGCCGGTTTATTTTGTTTTGATAAC 59.637 34.615 1.90 0.00 0.00 1.89
7452 9085 7.409980 CGCCGGTTTATTTTGTTTTGATAACTC 60.410 37.037 1.90 0.00 0.00 3.01
7453 9086 7.597369 GCCGGTTTATTTTGTTTTGATAACTCT 59.403 33.333 1.90 0.00 0.00 3.24
7477 9120 8.349983 TCTAGTAATCAAAAGCTTGACCAAAAC 58.650 33.333 0.00 0.00 44.28 2.43
7570 9258 5.410439 TGACCTAAAAGGAAGCGATACAAAC 59.590 40.000 0.00 0.00 37.67 2.93
7656 9344 7.661437 TGCATATTATGTATTCCCTCTGTTCAC 59.339 37.037 5.60 0.00 0.00 3.18
7783 9557 3.561143 AGTGAAATTAGGTTGTGTGCCA 58.439 40.909 0.00 0.00 0.00 4.92
7784 9558 3.569701 AGTGAAATTAGGTTGTGTGCCAG 59.430 43.478 0.00 0.00 0.00 4.85
7860 9635 6.478129 TCTATCTTACCCGGTTCACAATTTT 58.522 36.000 0.00 0.00 0.00 1.82
7933 12823 6.471841 TGATTTTGATGAAAATTGTATCGGCG 59.528 34.615 4.32 0.00 41.06 6.46
7946 12836 0.603439 ATCGGCGTGCATGCATATCA 60.603 50.000 30.79 10.64 36.28 2.15
7947 12837 0.813210 TCGGCGTGCATGCATATCAA 60.813 50.000 30.79 7.30 36.28 2.57
7958 12848 6.765036 GTGCATGCATATCAATAGGTATAGCT 59.235 38.462 25.64 9.78 0.00 3.32
7998 12888 7.880160 TCTCCAGTTCATTCAAGAAAAGAAA 57.120 32.000 3.62 0.00 0.00 2.52
8003 12893 9.748708 CCAGTTCATTCAAGAAAAGAAAACATA 57.251 29.630 3.62 0.00 0.00 2.29
8015 12905 9.490379 AGAAAAGAAAACATAGAAGTGATACGT 57.510 29.630 0.00 0.00 0.00 3.57
8018 12908 9.701098 AAAGAAAACATAGAAGTGATACGTACA 57.299 29.630 0.00 0.00 0.00 2.90
8019 12909 9.871238 AAGAAAACATAGAAGTGATACGTACAT 57.129 29.630 0.00 0.00 0.00 2.29
8020 12910 9.871238 AGAAAACATAGAAGTGATACGTACATT 57.129 29.630 0.00 0.00 0.00 2.71
8023 12913 8.997621 AACATAGAAGTGATACGTACATTTGT 57.002 30.769 0.00 3.29 0.00 2.83
8029 12919 8.715088 AGAAGTGATACGTACATTTGTAAAACC 58.285 33.333 0.00 0.00 31.52 3.27
8030 12920 7.052565 AGTGATACGTACATTTGTAAAACCG 57.947 36.000 0.00 0.00 31.52 4.44
8031 12921 6.646240 AGTGATACGTACATTTGTAAAACCGT 59.354 34.615 0.00 8.50 35.03 4.83
8032 12922 6.733280 GTGATACGTACATTTGTAAAACCGTG 59.267 38.462 0.00 0.00 33.57 4.94
8033 12923 4.471157 ACGTACATTTGTAAAACCGTGG 57.529 40.909 0.00 0.00 31.40 4.94
8034 12924 3.227948 CGTACATTTGTAAAACCGTGGC 58.772 45.455 0.00 0.00 31.52 5.01
8035 12925 3.058777 CGTACATTTGTAAAACCGTGGCT 60.059 43.478 0.00 0.00 31.52 4.75
8036 12926 3.636282 ACATTTGTAAAACCGTGGCTC 57.364 42.857 0.00 0.00 0.00 4.70
8037 12927 2.031508 ACATTTGTAAAACCGTGGCTCG 60.032 45.455 1.28 1.28 39.52 5.03
8038 12928 0.308376 TTTGTAAAACCGTGGCTCGC 59.692 50.000 2.96 0.00 38.35 5.03
8039 12929 0.814410 TTGTAAAACCGTGGCTCGCA 60.814 50.000 2.96 0.00 38.35 5.10
8040 12930 1.205820 GTAAAACCGTGGCTCGCAC 59.794 57.895 2.96 0.00 38.35 5.34
8041 12931 1.962306 TAAAACCGTGGCTCGCACC 60.962 57.895 2.96 0.00 38.35 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.300620 CTTCGTGCCAACTCGACCA 60.301 57.895 0.00 0.00 41.12 4.02
65 66 0.402121 ACTTTTCTCCCAGGACAGGC 59.598 55.000 0.00 0.00 0.00 4.85
138 139 0.671781 GAGCTCCGCTGTGTTGTCAT 60.672 55.000 0.87 0.00 39.88 3.06
233 235 5.820423 TGTCCCTTTGATTATCGTTACCATG 59.180 40.000 0.00 0.00 0.00 3.66
447 454 0.326332 GTACAACCCTAGGCCCCTCT 60.326 60.000 2.05 0.00 0.00 3.69
520 528 2.260844 TAGGACTCCCGTATACGTGG 57.739 55.000 22.87 21.50 37.74 4.94
538 546 7.282675 TGTTATTTCTCGGTTTTGACTTGGTTA 59.717 33.333 0.00 0.00 0.00 2.85
565 573 4.160626 TGACTTGGTTTTCATCGGGTTTTT 59.839 37.500 0.00 0.00 0.00 1.94
566 574 3.702045 TGACTTGGTTTTCATCGGGTTTT 59.298 39.130 0.00 0.00 0.00 2.43
567 575 3.292460 TGACTTGGTTTTCATCGGGTTT 58.708 40.909 0.00 0.00 0.00 3.27
568 576 2.938838 TGACTTGGTTTTCATCGGGTT 58.061 42.857 0.00 0.00 0.00 4.11
569 577 2.649531 TGACTTGGTTTTCATCGGGT 57.350 45.000 0.00 0.00 0.00 5.28
570 578 4.048504 GTTTTGACTTGGTTTTCATCGGG 58.951 43.478 0.00 0.00 0.00 5.14
571 579 4.932146 AGTTTTGACTTGGTTTTCATCGG 58.068 39.130 0.00 0.00 0.00 4.18
572 580 4.976116 GGAGTTTTGACTTGGTTTTCATCG 59.024 41.667 0.00 0.00 0.00 3.84
573 581 6.149129 AGGAGTTTTGACTTGGTTTTCATC 57.851 37.500 0.00 0.00 0.00 2.92
574 582 5.656416 TGAGGAGTTTTGACTTGGTTTTCAT 59.344 36.000 0.00 0.00 0.00 2.57
575 583 5.013547 TGAGGAGTTTTGACTTGGTTTTCA 58.986 37.500 0.00 0.00 0.00 2.69
576 584 5.576447 TGAGGAGTTTTGACTTGGTTTTC 57.424 39.130 0.00 0.00 0.00 2.29
577 585 7.654022 TTATGAGGAGTTTTGACTTGGTTTT 57.346 32.000 0.00 0.00 0.00 2.43
578 586 7.654022 TTTATGAGGAGTTTTGACTTGGTTT 57.346 32.000 0.00 0.00 0.00 3.27
579 587 7.654022 TTTTATGAGGAGTTTTGACTTGGTT 57.346 32.000 0.00 0.00 0.00 3.67
580 588 7.342026 ACTTTTTATGAGGAGTTTTGACTTGGT 59.658 33.333 0.00 0.00 0.00 3.67
581 589 7.716612 ACTTTTTATGAGGAGTTTTGACTTGG 58.283 34.615 0.00 0.00 0.00 3.61
582 590 8.405531 TGACTTTTTATGAGGAGTTTTGACTTG 58.594 33.333 0.00 0.00 0.00 3.16
583 591 8.406297 GTGACTTTTTATGAGGAGTTTTGACTT 58.594 33.333 0.00 0.00 0.00 3.01
584 592 7.556275 TGTGACTTTTTATGAGGAGTTTTGACT 59.444 33.333 0.00 0.00 0.00 3.41
585 593 7.703328 TGTGACTTTTTATGAGGAGTTTTGAC 58.297 34.615 0.00 0.00 0.00 3.18
586 594 7.873719 TGTGACTTTTTATGAGGAGTTTTGA 57.126 32.000 0.00 0.00 0.00 2.69
587 595 8.925161 TTTGTGACTTTTTATGAGGAGTTTTG 57.075 30.769 0.00 0.00 0.00 2.44
589 597 9.750125 GAATTTGTGACTTTTTATGAGGAGTTT 57.250 29.630 0.00 0.00 0.00 2.66
590 598 9.136323 AGAATTTGTGACTTTTTATGAGGAGTT 57.864 29.630 0.00 0.00 0.00 3.01
591 599 8.697507 AGAATTTGTGACTTTTTATGAGGAGT 57.302 30.769 0.00 0.00 0.00 3.85
592 600 7.959651 CGAGAATTTGTGACTTTTTATGAGGAG 59.040 37.037 0.00 0.00 0.00 3.69
593 601 7.659799 TCGAGAATTTGTGACTTTTTATGAGGA 59.340 33.333 0.00 0.00 0.00 3.71
594 602 7.806690 TCGAGAATTTGTGACTTTTTATGAGG 58.193 34.615 0.00 0.00 0.00 3.86
595 603 7.479916 GCTCGAGAATTTGTGACTTTTTATGAG 59.520 37.037 18.75 0.00 0.00 2.90
596 604 7.298122 GCTCGAGAATTTGTGACTTTTTATGA 58.702 34.615 18.75 0.00 0.00 2.15
597 605 6.524586 GGCTCGAGAATTTGTGACTTTTTATG 59.475 38.462 18.75 0.00 0.00 1.90
598 606 6.206634 TGGCTCGAGAATTTGTGACTTTTTAT 59.793 34.615 18.75 0.00 0.00 1.40
599 607 5.529430 TGGCTCGAGAATTTGTGACTTTTTA 59.471 36.000 18.75 0.00 0.00 1.52
600 608 4.338118 TGGCTCGAGAATTTGTGACTTTTT 59.662 37.500 18.75 0.00 0.00 1.94
601 609 3.882888 TGGCTCGAGAATTTGTGACTTTT 59.117 39.130 18.75 0.00 0.00 2.27
602 610 3.476552 TGGCTCGAGAATTTGTGACTTT 58.523 40.909 18.75 0.00 0.00 2.66
603 611 3.126001 TGGCTCGAGAATTTGTGACTT 57.874 42.857 18.75 0.00 0.00 3.01
604 612 2.839486 TGGCTCGAGAATTTGTGACT 57.161 45.000 18.75 0.00 0.00 3.41
605 613 3.002791 TGATGGCTCGAGAATTTGTGAC 58.997 45.455 18.75 0.00 0.00 3.67
606 614 3.333029 TGATGGCTCGAGAATTTGTGA 57.667 42.857 18.75 0.00 0.00 3.58
607 615 4.154737 TCTTTGATGGCTCGAGAATTTGTG 59.845 41.667 18.75 0.00 0.00 3.33
608 616 4.326826 TCTTTGATGGCTCGAGAATTTGT 58.673 39.130 18.75 0.00 0.00 2.83
609 617 4.201891 CCTCTTTGATGGCTCGAGAATTTG 60.202 45.833 18.75 0.00 0.00 2.32
610 618 3.944015 CCTCTTTGATGGCTCGAGAATTT 59.056 43.478 18.75 0.00 0.00 1.82
611 619 3.198635 TCCTCTTTGATGGCTCGAGAATT 59.801 43.478 18.75 0.00 0.00 2.17
612 620 2.768527 TCCTCTTTGATGGCTCGAGAAT 59.231 45.455 18.75 8.82 0.00 2.40
613 621 2.179427 TCCTCTTTGATGGCTCGAGAA 58.821 47.619 18.75 3.24 0.00 2.87
614 622 1.852633 TCCTCTTTGATGGCTCGAGA 58.147 50.000 18.75 0.00 0.00 4.04
615 623 2.680312 TTCCTCTTTGATGGCTCGAG 57.320 50.000 8.45 8.45 0.00 4.04
616 624 3.634397 ATTTCCTCTTTGATGGCTCGA 57.366 42.857 0.00 0.00 0.00 4.04
617 625 5.049818 GTGATATTTCCTCTTTGATGGCTCG 60.050 44.000 0.00 0.00 0.00 5.03
618 626 5.240403 GGTGATATTTCCTCTTTGATGGCTC 59.760 44.000 0.00 0.00 0.00 4.70
619 627 5.136105 GGTGATATTTCCTCTTTGATGGCT 58.864 41.667 0.00 0.00 0.00 4.75
620 628 4.279420 GGGTGATATTTCCTCTTTGATGGC 59.721 45.833 0.00 0.00 0.00 4.40
621 629 5.699143 AGGGTGATATTTCCTCTTTGATGG 58.301 41.667 0.00 0.00 0.00 3.51
622 630 6.874288 GAGGGTGATATTTCCTCTTTGATG 57.126 41.667 10.75 0.00 42.70 3.07
629 637 2.640332 GGGGAGAGGGTGATATTTCCTC 59.360 54.545 10.27 10.27 45.46 3.71
630 638 2.700540 GGGGGAGAGGGTGATATTTCCT 60.701 54.545 0.00 0.00 0.00 3.36
631 639 1.705745 GGGGGAGAGGGTGATATTTCC 59.294 57.143 0.00 0.00 0.00 3.13
632 640 2.418669 TGGGGGAGAGGGTGATATTTC 58.581 52.381 0.00 0.00 0.00 2.17
633 641 2.605825 TGGGGGAGAGGGTGATATTT 57.394 50.000 0.00 0.00 0.00 1.40
634 642 2.514160 GTTTGGGGGAGAGGGTGATATT 59.486 50.000 0.00 0.00 0.00 1.28
635 643 2.136026 GTTTGGGGGAGAGGGTGATAT 58.864 52.381 0.00 0.00 0.00 1.63
636 644 1.203505 TGTTTGGGGGAGAGGGTGATA 60.204 52.381 0.00 0.00 0.00 2.15
637 645 0.477597 TGTTTGGGGGAGAGGGTGAT 60.478 55.000 0.00 0.00 0.00 3.06
638 646 1.073319 TGTTTGGGGGAGAGGGTGA 60.073 57.895 0.00 0.00 0.00 4.02
639 647 1.074951 GTGTTTGGGGGAGAGGGTG 59.925 63.158 0.00 0.00 0.00 4.61
640 648 0.776080 ATGTGTTTGGGGGAGAGGGT 60.776 55.000 0.00 0.00 0.00 4.34
641 649 1.212935 CTATGTGTTTGGGGGAGAGGG 59.787 57.143 0.00 0.00 0.00 4.30
642 650 2.196595 TCTATGTGTTTGGGGGAGAGG 58.803 52.381 0.00 0.00 0.00 3.69
643 651 3.370953 CCTTCTATGTGTTTGGGGGAGAG 60.371 52.174 0.00 0.00 0.00 3.20
644 652 2.576191 CCTTCTATGTGTTTGGGGGAGA 59.424 50.000 0.00 0.00 0.00 3.71
645 653 2.357154 CCCTTCTATGTGTTTGGGGGAG 60.357 54.545 0.00 0.00 34.94 4.30
646 654 1.638589 CCCTTCTATGTGTTTGGGGGA 59.361 52.381 0.00 0.00 34.94 4.81
647 655 2.143876 CCCTTCTATGTGTTTGGGGG 57.856 55.000 0.00 0.00 0.00 5.40
648 656 2.143876 CCCCTTCTATGTGTTTGGGG 57.856 55.000 0.00 0.00 46.89 4.96
649 657 3.449746 TTCCCCTTCTATGTGTTTGGG 57.550 47.619 0.00 0.00 34.68 4.12
650 658 3.131046 GCATTCCCCTTCTATGTGTTTGG 59.869 47.826 0.00 0.00 0.00 3.28
651 659 3.131046 GGCATTCCCCTTCTATGTGTTTG 59.869 47.826 0.00 0.00 0.00 2.93
652 660 3.365472 GGCATTCCCCTTCTATGTGTTT 58.635 45.455 0.00 0.00 0.00 2.83
653 661 3.018423 GGCATTCCCCTTCTATGTGTT 57.982 47.619 0.00 0.00 0.00 3.32
654 662 2.736670 GGCATTCCCCTTCTATGTGT 57.263 50.000 0.00 0.00 0.00 3.72
686 694 3.697747 CCGTCAACCACCGGCCTA 61.698 66.667 0.00 0.00 37.43 3.93
722 730 0.106619 ACCGTCTCTAGGTAGCCCAG 60.107 60.000 0.00 0.00 40.80 4.45
723 731 0.333993 AACCGTCTCTAGGTAGCCCA 59.666 55.000 0.00 0.00 41.95 5.36
741 749 6.968263 TGGAATGACATTGTTGAAACCTAA 57.032 33.333 5.14 0.00 0.00 2.69
755 763 9.129532 TGCATAACACATTAATATGGAATGACA 57.870 29.630 14.54 8.22 37.65 3.58
762 770 8.358895 TGGTGATTGCATAACACATTAATATGG 58.641 33.333 16.20 0.00 36.01 2.74
765 773 8.620416 GTCTGGTGATTGCATAACACATTAATA 58.380 33.333 16.20 0.00 36.42 0.98
773 781 3.081061 GGTGTCTGGTGATTGCATAACA 58.919 45.455 0.00 0.00 0.00 2.41
783 791 3.056821 CGAAAGTAGATGGTGTCTGGTGA 60.057 47.826 0.00 0.00 37.83 4.02
828 840 9.339850 GGTTAGAAGTAGTAGTAGATGTCATGA 57.660 37.037 0.00 0.00 0.00 3.07
885 900 4.715297 GGAAGTCCCTCTATGGTTCACTTA 59.285 45.833 0.00 0.00 32.00 2.24
908 923 3.548818 CCTTTTTGGTTCACTTGCGAGAG 60.549 47.826 8.31 0.00 0.00 3.20
910 925 2.357637 TCCTTTTTGGTTCACTTGCGAG 59.642 45.455 0.00 0.00 37.07 5.03
912 927 2.857748 GTTCCTTTTTGGTTCACTTGCG 59.142 45.455 0.00 0.00 37.07 4.85
931 946 6.014070 GGTTCTTCTAGAGGAGAAAGGAAGTT 60.014 42.308 8.19 0.00 43.75 2.66
932 947 5.482526 GGTTCTTCTAGAGGAGAAAGGAAGT 59.517 44.000 8.19 0.00 43.75 3.01
933 948 5.719563 AGGTTCTTCTAGAGGAGAAAGGAAG 59.280 44.000 8.19 0.00 43.75 3.46
934 949 5.482175 CAGGTTCTTCTAGAGGAGAAAGGAA 59.518 44.000 8.19 0.00 43.75 3.36
935 950 5.020132 CAGGTTCTTCTAGAGGAGAAAGGA 58.980 45.833 8.19 0.00 43.75 3.36
936 951 4.775253 ACAGGTTCTTCTAGAGGAGAAAGG 59.225 45.833 8.19 4.66 43.75 3.11
938 953 4.773149 GGACAGGTTCTTCTAGAGGAGAAA 59.227 45.833 8.19 0.00 43.75 2.52
939 954 4.044825 AGGACAGGTTCTTCTAGAGGAGAA 59.955 45.833 4.59 3.85 42.13 2.87
941 956 3.699038 CAGGACAGGTTCTTCTAGAGGAG 59.301 52.174 4.59 0.00 0.00 3.69
978 1016 0.179029 AACGGGGACAGGACAGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
1035 1073 2.450243 GAGACTGGGTGGGAGGGA 59.550 66.667 0.00 0.00 0.00 4.20
1039 1077 2.283676 GACCGAGACTGGGTGGGA 60.284 66.667 14.63 0.00 38.07 4.37
1040 1078 3.391382 GGACCGAGACTGGGTGGG 61.391 72.222 14.63 0.00 38.07 4.61
1041 1079 3.391382 GGGACCGAGACTGGGTGG 61.391 72.222 14.63 0.00 38.07 4.61
1042 1080 3.760035 CGGGACCGAGACTGGGTG 61.760 72.222 14.63 0.00 42.83 4.61
1045 1083 3.450115 GACCGGGACCGAGACTGG 61.450 72.222 13.13 0.00 42.83 4.00
1046 1084 3.450115 GGACCGGGACCGAGACTG 61.450 72.222 13.13 0.00 42.83 3.51
1047 1085 4.755507 GGGACCGGGACCGAGACT 62.756 72.222 13.13 0.00 42.83 3.24
1281 1337 1.154225 GCAATCAAACACGAGGCGG 60.154 57.895 0.00 0.00 0.00 6.13
1362 1418 1.524863 AACGAGCTGCCACTAGACGT 61.525 55.000 0.00 0.00 35.21 4.34
1363 1419 0.388649 AAACGAGCTGCCACTAGACG 60.389 55.000 0.00 0.00 0.00 4.18
1364 1420 1.727335 GAAAACGAGCTGCCACTAGAC 59.273 52.381 0.00 0.00 0.00 2.59
1365 1421 1.337823 GGAAAACGAGCTGCCACTAGA 60.338 52.381 0.00 0.00 0.00 2.43
1366 1422 1.079503 GGAAAACGAGCTGCCACTAG 58.920 55.000 0.00 0.00 0.00 2.57
1367 1423 0.321298 GGGAAAACGAGCTGCCACTA 60.321 55.000 0.00 0.00 0.00 2.74
1383 1439 2.961531 TCCGTCTGAAATTTTGGGGA 57.038 45.000 0.00 0.00 0.00 4.81
1455 1515 4.313020 ACCAAATTCAGCAGAATCTCCT 57.687 40.909 4.66 0.00 43.52 3.69
1538 1598 5.687166 ACTATCAATTTCCCCACGACTAA 57.313 39.130 0.00 0.00 0.00 2.24
1539 1599 5.424757 CAACTATCAATTTCCCCACGACTA 58.575 41.667 0.00 0.00 0.00 2.59
1567 1627 7.380602 AGTTGAAAAGTATCTACGTACACACAC 59.619 37.037 0.00 0.00 31.58 3.82
1568 1628 7.428020 AGTTGAAAAGTATCTACGTACACACA 58.572 34.615 0.00 0.00 31.58 3.72
1707 1774 7.363705 CCCAGCTATGACACCAAATTAAAATCA 60.364 37.037 0.00 0.00 0.00 2.57
1709 1776 6.667414 TCCCAGCTATGACACCAAATTAAAAT 59.333 34.615 0.00 0.00 0.00 1.82
1735 1806 7.553760 GGAAAACAGGATAACCTTACCGAATAA 59.446 37.037 0.00 0.00 45.36 1.40
1738 1809 5.221884 TGGAAAACAGGATAACCTTACCGAA 60.222 40.000 0.00 0.00 45.36 4.30
1900 2056 2.880890 ACTGCAAAACATGACAGTCCTC 59.119 45.455 0.00 0.00 40.20 3.71
2042 2200 2.104792 TGCAAAGCAGGTGTCTCTAACT 59.895 45.455 0.00 0.00 33.32 2.24
2101 2259 0.254178 ATCAAATCACGAGCCCTGCT 59.746 50.000 0.00 0.00 43.88 4.24
2116 2274 3.540314 ACAAAGCACAAGCCAAATCAA 57.460 38.095 0.00 0.00 43.56 2.57
2122 2280 2.356665 TTCCTACAAAGCACAAGCCA 57.643 45.000 0.00 0.00 43.56 4.75
2123 2281 2.094545 CCATTCCTACAAAGCACAAGCC 60.095 50.000 0.00 0.00 43.56 4.35
2200 2358 2.375174 AGAAGCAACCAATGTACCCTGA 59.625 45.455 0.00 0.00 0.00 3.86
2344 2502 7.040823 GGACATTTTGCTTTAGATATCCTCCTG 60.041 40.741 0.00 0.00 0.00 3.86
2514 2672 5.306532 AGAATGTGCAGCTTAGACATTTG 57.693 39.130 13.39 0.00 39.77 2.32
2560 2718 4.270008 AGTAGGTCACAACTTGCAAAAGT 58.730 39.130 0.00 0.00 33.76 2.66
2579 2737 1.732117 TTTTTGGGACGGAGGGAGTA 58.268 50.000 0.00 0.00 0.00 2.59
2580 2738 1.073098 ATTTTTGGGACGGAGGGAGT 58.927 50.000 0.00 0.00 0.00 3.85
2581 2739 3.279434 CTTATTTTTGGGACGGAGGGAG 58.721 50.000 0.00 0.00 0.00 4.30
2582 2740 2.645797 ACTTATTTTTGGGACGGAGGGA 59.354 45.455 0.00 0.00 0.00 4.20
2583 2741 2.752903 CACTTATTTTTGGGACGGAGGG 59.247 50.000 0.00 0.00 0.00 4.30
2584 2742 3.418047 ACACTTATTTTTGGGACGGAGG 58.582 45.455 0.00 0.00 0.00 4.30
2585 2743 4.324267 AGACACTTATTTTTGGGACGGAG 58.676 43.478 0.00 0.00 0.00 4.63
2586 2744 4.202377 TGAGACACTTATTTTTGGGACGGA 60.202 41.667 0.00 0.00 0.00 4.69
2587 2745 4.069304 TGAGACACTTATTTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2588 2746 5.238650 AGTTGAGACACTTATTTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
2589 2747 6.635030 AGTTGAGACACTTATTTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
2590 2748 7.123547 ACAAAGTTGAGACACTTATTTTTGGGA 59.876 33.333 0.00 0.00 35.87 4.37
2591 2749 7.264947 ACAAAGTTGAGACACTTATTTTTGGG 58.735 34.615 0.00 0.00 35.87 4.12
2592 2750 9.233232 GTACAAAGTTGAGACACTTATTTTTGG 57.767 33.333 0.00 0.00 35.87 3.28
2593 2751 9.781834 TGTACAAAGTTGAGACACTTATTTTTG 57.218 29.630 0.00 0.00 35.87 2.44
2613 2771 9.899661 AGGAGCTAACACAATATTAATGTACAA 57.100 29.630 0.00 0.00 0.00 2.41
2614 2772 9.542462 GAGGAGCTAACACAATATTAATGTACA 57.458 33.333 0.00 0.00 0.00 2.90
2615 2773 9.765795 AGAGGAGCTAACACAATATTAATGTAC 57.234 33.333 0.00 0.00 0.00 2.90
2709 2867 8.910944 GGGAGTATAACAGAACATAGTCAACTA 58.089 37.037 0.00 0.00 31.40 2.24
2721 2879 4.422057 TCCAGTGTGGGAGTATAACAGAA 58.578 43.478 0.00 0.00 38.32 3.02
2735 2893 4.997395 ACTTGCAACTATAGTTCCAGTGTG 59.003 41.667 15.35 4.74 35.83 3.82
2736 2894 5.228945 ACTTGCAACTATAGTTCCAGTGT 57.771 39.130 15.35 12.08 35.83 3.55
2805 2963 1.637553 AGGGGACTAAGGTGAGTACGA 59.362 52.381 0.00 0.00 40.61 3.43
2838 2996 9.729023 CAGATACAAATGCGTTAAATCCATTAA 57.271 29.630 0.00 0.00 0.00 1.40
2839 2997 8.898761 ACAGATACAAATGCGTTAAATCCATTA 58.101 29.630 0.00 0.00 0.00 1.90
2926 3086 5.573380 AGGCTAGCTTTGATATCATTGGA 57.427 39.130 15.72 0.00 0.00 3.53
3038 3238 4.241151 AGAACCATCTCCATGATCTCCAT 58.759 43.478 0.00 0.00 35.44 3.41
3186 3386 4.876679 GGTTATAGCTCTTTGTTGGACTCC 59.123 45.833 0.00 0.00 0.00 3.85
3224 3424 2.030027 TCCACTGAGGGTTGAGTGAT 57.970 50.000 0.00 0.00 41.90 3.06
3432 3632 2.367567 TCTTATATTGTGGGACGGAGGC 59.632 50.000 0.00 0.00 0.00 4.70
3495 3703 5.205759 ACAGTAACTTAGTACACACACCC 57.794 43.478 0.00 0.00 0.00 4.61
3498 3706 6.487668 TGCTCTACAGTAACTTAGTACACACA 59.512 38.462 0.00 0.00 0.00 3.72
3501 3710 7.194962 GGATGCTCTACAGTAACTTAGTACAC 58.805 42.308 0.00 0.00 0.00 2.90
3631 3846 7.546667 GGATTTGAAACATCATACAGCAATGTT 59.453 33.333 0.00 0.00 43.53 2.71
3856 4071 5.918011 CGCTCTTAGATGAAAGATCACCTAC 59.082 44.000 0.00 0.00 38.69 3.18
4131 4346 1.135094 CCTATCACCACCAGCTCCAT 58.865 55.000 0.00 0.00 0.00 3.41
4166 4381 1.938585 TACTTCTGGTGGAGGAGTGG 58.061 55.000 0.00 0.00 41.16 4.00
4292 4519 6.447162 CAGTTCGAGCCATAGTCATATTACA 58.553 40.000 0.00 0.00 0.00 2.41
4379 4606 7.013559 CCACCATCATCAAACATTAGCTGAATA 59.986 37.037 0.00 0.00 0.00 1.75
4578 4805 8.160765 TCCATTTTAGTGACAACTAATTCTGGA 58.839 33.333 14.21 14.21 45.93 3.86
4580 4807 9.778993 CATCCATTTTAGTGACAACTAATTCTG 57.221 33.333 0.00 0.00 45.93 3.02
4581 4808 9.520515 ACATCCATTTTAGTGACAACTAATTCT 57.479 29.630 0.00 0.00 45.93 2.40
4588 4815 8.647226 GCAAAATACATCCATTTTAGTGACAAC 58.353 33.333 0.00 0.00 36.26 3.32
4594 4821 6.919721 ACGTGCAAAATACATCCATTTTAGT 58.080 32.000 0.00 0.00 36.26 2.24
4597 4824 5.777802 TGACGTGCAAAATACATCCATTTT 58.222 33.333 0.00 0.00 38.37 1.82
4602 4829 4.096382 AGGATTGACGTGCAAAATACATCC 59.904 41.667 0.00 0.54 40.48 3.51
4818 5280 4.051922 CGCCAACAAGCTACTTAGGATAG 58.948 47.826 0.00 0.00 0.00 2.08
5007 5469 6.183360 ACCAGATAAACTATTCAGCCATACGT 60.183 38.462 0.00 0.00 0.00 3.57
5293 5755 4.636206 CAGGTTGAGAAATTACCTACTGCC 59.364 45.833 0.00 0.00 0.00 4.85
5381 5843 6.502138 AGAAATCCATTCCCATCTTACCAAA 58.498 36.000 0.00 0.00 38.94 3.28
5888 6351 2.314561 ACAAATGTGAATCGTGTGCG 57.685 45.000 0.00 0.00 39.92 5.34
6175 6849 6.655003 TCATCAAGACTTCCCTGTTTTGTATC 59.345 38.462 0.00 0.00 34.78 2.24
6253 6927 9.457436 GGATTTGAAAAGGGAATAGTAAGTACA 57.543 33.333 0.00 0.00 0.00 2.90
6282 6956 1.372087 GGATGGTTTCAGGAGCTGCG 61.372 60.000 0.00 0.00 0.00 5.18
6328 7002 5.094134 GCTAACGTCTTCTTGTACGATTCT 58.906 41.667 1.45 0.00 41.55 2.40
6511 7185 1.950973 GCTCCTCCAGTTCCTCGTCC 61.951 65.000 0.00 0.00 0.00 4.79
6628 7302 1.213296 GCTAAGGAATGGACTGGGGA 58.787 55.000 0.00 0.00 0.00 4.81
6640 7314 4.680487 GACTCGGGAGGCTAAGGA 57.320 61.111 0.00 0.00 32.39 3.36
6666 7342 1.526575 CTGGCAGGCAATGAACCGTT 61.527 55.000 6.61 0.00 0.00 4.44
7085 7903 6.526674 CGGTTTTACAATCCTGTATTTTGCTC 59.473 38.462 0.00 0.00 37.86 4.26
7093 7911 3.008157 TCCAGCGGTTTTACAATCCTGTA 59.992 43.478 0.00 0.00 36.96 2.74
7095 7913 2.432444 TCCAGCGGTTTTACAATCCTG 58.568 47.619 0.00 0.00 0.00 3.86
7111 7929 9.480053 AATCAAACACAAATTCTACAAATCCAG 57.520 29.630 0.00 0.00 0.00 3.86
7159 7979 7.859325 TGACCCTATTTGACTGTTTTATAGC 57.141 36.000 0.00 0.00 0.00 2.97
7177 7997 3.196254 CCTTTTGCATATGCTTTGACCCT 59.804 43.478 27.13 0.00 42.66 4.34
7178 7998 3.055891 ACCTTTTGCATATGCTTTGACCC 60.056 43.478 27.13 0.00 42.66 4.46
7182 8003 6.624423 AGTCTTACCTTTTGCATATGCTTTG 58.376 36.000 27.13 14.47 42.66 2.77
7319 8152 4.705110 TCCACTTGATTCAAAGGAGTGA 57.295 40.909 14.85 2.65 39.97 3.41
7359 8192 8.376270 ACATAGGAGTAGGAAATTTACATAGGC 58.624 37.037 2.58 0.00 0.00 3.93
7446 9079 9.384764 GGTCAAGCTTTTGATTACTAGAGTTAT 57.615 33.333 0.00 0.00 33.02 1.89
7447 9080 8.372459 TGGTCAAGCTTTTGATTACTAGAGTTA 58.628 33.333 0.00 0.00 33.02 2.24
7448 9081 7.224297 TGGTCAAGCTTTTGATTACTAGAGTT 58.776 34.615 0.00 0.00 33.02 3.01
7449 9082 6.769512 TGGTCAAGCTTTTGATTACTAGAGT 58.230 36.000 0.00 0.00 33.02 3.24
7450 9083 7.672983 TTGGTCAAGCTTTTGATTACTAGAG 57.327 36.000 0.00 0.00 33.02 2.43
7452 9085 7.323656 CGTTTTGGTCAAGCTTTTGATTACTAG 59.676 37.037 0.00 0.00 33.02 2.57
7453 9086 7.136119 CGTTTTGGTCAAGCTTTTGATTACTA 58.864 34.615 0.00 0.00 33.02 1.82
7461 9104 3.924073 GTCAACGTTTTGGTCAAGCTTTT 59.076 39.130 0.00 0.00 33.06 2.27
7570 9258 3.854666 CTCACCAAGATCCACAGTACTG 58.145 50.000 21.44 21.44 0.00 2.74
7596 9284 3.673809 GCACGAGTAAGACTGTGTAAAGG 59.326 47.826 0.00 0.00 33.14 3.11
7737 9505 1.011968 TGTACAACAGATGACGGCGC 61.012 55.000 6.90 0.00 0.00 6.53
7738 9506 0.713883 GTGTACAACAGATGACGGCG 59.286 55.000 4.80 4.80 0.00 6.46
7783 9557 8.651389 ACACATATTTAGTATCACTATGGTGCT 58.349 33.333 3.97 0.00 42.72 4.40
7784 9558 8.833231 ACACATATTTAGTATCACTATGGTGC 57.167 34.615 3.97 0.00 42.72 5.01
7800 9574 5.355910 AGAAATCCGCCGTAAACACATATTT 59.644 36.000 0.00 0.00 0.00 1.40
7878 9653 2.818921 TGGGCAGGCTTTTTATGATGT 58.181 42.857 0.00 0.00 0.00 3.06
7879 9654 5.733620 ATATGGGCAGGCTTTTTATGATG 57.266 39.130 0.00 0.00 0.00 3.07
7933 12823 6.765036 AGCTATACCTATTGATATGCATGCAC 59.235 38.462 25.37 11.49 0.00 4.57
7977 12867 8.652810 ATGTTTTCTTTTCTTGAATGAACTGG 57.347 30.769 0.00 0.00 32.87 4.00
7992 12882 9.701098 TGTACGTATCACTTCTATGTTTTCTTT 57.299 29.630 0.00 0.00 0.00 2.52
7998 12888 8.997621 ACAAATGTACGTATCACTTCTATGTT 57.002 30.769 0.00 0.00 0.00 2.71
8003 12893 8.715088 GGTTTTACAAATGTACGTATCACTTCT 58.285 33.333 0.00 0.00 0.00 2.85
8004 12894 7.685304 CGGTTTTACAAATGTACGTATCACTTC 59.315 37.037 0.00 0.00 0.00 3.01
8006 12896 6.646240 ACGGTTTTACAAATGTACGTATCACT 59.354 34.615 0.00 0.00 31.01 3.41
8007 12897 6.733280 CACGGTTTTACAAATGTACGTATCAC 59.267 38.462 0.00 0.00 31.39 3.06
8008 12898 6.128607 CCACGGTTTTACAAATGTACGTATCA 60.129 38.462 0.00 0.00 31.39 2.15
8009 12899 6.242829 CCACGGTTTTACAAATGTACGTATC 58.757 40.000 0.00 0.00 31.39 2.24
8010 12900 5.390779 GCCACGGTTTTACAAATGTACGTAT 60.391 40.000 0.00 0.00 31.39 3.06
8011 12901 4.084118 GCCACGGTTTTACAAATGTACGTA 60.084 41.667 6.63 0.00 31.39 3.57
8012 12902 3.303924 GCCACGGTTTTACAAATGTACGT 60.304 43.478 0.00 0.00 32.29 3.57
8013 12903 3.058777 AGCCACGGTTTTACAAATGTACG 60.059 43.478 0.00 0.00 0.00 3.67
8014 12904 4.469552 GAGCCACGGTTTTACAAATGTAC 58.530 43.478 0.00 0.00 0.00 2.90
8015 12905 3.186817 CGAGCCACGGTTTTACAAATGTA 59.813 43.478 0.00 0.00 38.46 2.29
8016 12906 2.031508 CGAGCCACGGTTTTACAAATGT 60.032 45.455 0.00 0.00 38.46 2.71
8017 12907 2.580589 CGAGCCACGGTTTTACAAATG 58.419 47.619 0.00 0.00 38.46 2.32
8018 12908 1.068816 GCGAGCCACGGTTTTACAAAT 60.069 47.619 3.29 0.00 42.83 2.32
8019 12909 0.308376 GCGAGCCACGGTTTTACAAA 59.692 50.000 3.29 0.00 42.83 2.83
8020 12910 0.814410 TGCGAGCCACGGTTTTACAA 60.814 50.000 3.29 0.00 42.83 2.41
8021 12911 1.227586 TGCGAGCCACGGTTTTACA 60.228 52.632 3.29 0.00 42.83 2.41
8022 12912 1.205820 GTGCGAGCCACGGTTTTAC 59.794 57.895 3.29 0.00 42.83 2.01
8023 12913 1.962306 GGTGCGAGCCACGGTTTTA 60.962 57.895 3.29 0.00 45.62 1.52
8024 12914 3.284449 GGTGCGAGCCACGGTTTT 61.284 61.111 3.29 0.00 45.62 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.