Multiple sequence alignment - TraesCS5D01G491700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G491700 chr5D 100.000 2972 0 0 1 2972 525387383 525390354 0.000000e+00 5489.0
1 TraesCS5D01G491700 chr5D 91.001 1389 73 30 433 1791 23870316 23871682 0.000000e+00 1825.0
2 TraesCS5D01G491700 chr5D 92.857 1204 47 17 1806 2972 23871747 23872948 0.000000e+00 1711.0
3 TraesCS5D01G491700 chr5D 83.945 436 41 18 1129 1551 525226906 525226487 9.990000e-105 390.0
4 TraesCS5D01G491700 chr5D 84.169 379 45 11 1170 1545 525317398 525317764 1.310000e-93 353.0
5 TraesCS5D01G491700 chr5D 83.155 374 42 10 1132 1493 525189094 525188730 3.700000e-84 322.0
6 TraesCS5D01G491700 chr5D 81.984 383 51 10 1167 1546 525250355 525250722 2.880000e-80 309.0
7 TraesCS5D01G491700 chr5D 92.891 211 12 3 237 445 30594743 30594534 1.340000e-78 303.0
8 TraesCS5D01G491700 chr5D 89.899 198 18 2 237 432 470496000 470496197 1.370000e-63 254.0
9 TraesCS5D01G491700 chr5D 97.727 44 1 0 2280 2323 362291079 362291122 3.180000e-10 76.8
10 TraesCS5D01G491700 chr5B 86.734 1583 102 51 432 1940 659747480 659749028 0.000000e+00 1661.0
11 TraesCS5D01G491700 chr5B 84.116 447 62 6 2348 2789 319315885 319315443 9.850000e-115 424.0
12 TraesCS5D01G491700 chr5B 74.817 818 134 46 1990 2746 690003856 690003050 1.340000e-78 303.0
13 TraesCS5D01G491700 chr5B 81.558 385 49 12 1132 1504 659557544 659557170 6.230000e-77 298.0
14 TraesCS5D01G491700 chr5B 100.000 42 0 0 2282 2323 580163878 580163919 8.830000e-11 78.7
15 TraesCS5D01G491700 chr5B 97.674 43 1 0 2281 2323 690002656 690002614 1.140000e-09 75.0
16 TraesCS5D01G491700 chr5B 100.000 29 0 0 437 465 659558153 659558125 1.000000e-03 54.7
17 TraesCS5D01G491700 chr5A 85.806 1409 101 44 602 1962 651790618 651791975 0.000000e+00 1402.0
18 TraesCS5D01G491700 chr5A 95.763 236 10 0 2 237 679746629 679746864 6.010000e-102 381.0
19 TraesCS5D01G491700 chr5A 85.484 372 39 8 1177 1545 651635600 651635959 1.010000e-99 374.0
20 TraesCS5D01G491700 chr5A 84.252 381 41 10 1129 1497 651569680 651569307 1.310000e-93 353.0
21 TraesCS5D01G491700 chr5A 82.009 428 51 15 1129 1546 651564362 651563951 1.020000e-89 340.0
22 TraesCS5D01G491700 chr5A 80.069 291 49 5 1994 2280 333439677 333439392 1.080000e-49 207.0
23 TraesCS5D01G491700 chr5A 90.265 113 10 1 2860 2972 651792008 651792119 2.390000e-31 147.0
24 TraesCS5D01G491700 chr6B 82.245 490 81 4 2323 2809 706516912 706517398 4.580000e-113 418.0
25 TraesCS5D01G491700 chr6B 82.328 464 73 6 2331 2789 339351413 339351872 7.720000e-106 394.0
26 TraesCS5D01G491700 chr6B 82.792 308 34 12 1984 2280 197228693 197228992 1.060000e-64 257.0
27 TraesCS5D01G491700 chr6B 82.550 298 41 8 1986 2279 457218393 457218683 4.920000e-63 252.0
28 TraesCS5D01G491700 chr1B 83.632 446 66 4 2348 2789 642813219 642813661 2.130000e-111 412.0
29 TraesCS5D01G491700 chr1B 91.414 198 14 3 237 432 28613635 28613439 4.880000e-68 268.0
30 TraesCS5D01G491700 chr1B 80.412 291 49 5 1991 2280 121737196 121736913 6.450000e-52 215.0
31 TraesCS5D01G491700 chr1D 83.370 451 68 4 2348 2794 37202334 37202781 7.670000e-111 411.0
32 TraesCS5D01G491700 chr1D 92.340 235 17 1 2 236 473341847 473342080 1.710000e-87 333.0
33 TraesCS5D01G491700 chr3B 82.218 478 78 7 2322 2794 5847575 5848050 3.570000e-109 405.0
34 TraesCS5D01G491700 chr3B 81.911 293 43 7 1989 2280 307319785 307319502 3.830000e-59 239.0
35 TraesCS5D01G491700 chr3B 97.727 44 1 0 2280 2323 566192448 566192405 3.180000e-10 76.8
36 TraesCS5D01G491700 chr6D 96.327 245 9 0 1 245 14980478 14980722 1.280000e-108 403.0
37 TraesCS5D01G491700 chr6D 82.571 459 71 7 2339 2794 469580322 469580774 2.150000e-106 396.0
38 TraesCS5D01G491700 chr6D 92.462 199 14 1 237 434 27527842 27527644 1.740000e-72 283.0
39 TraesCS5D01G491700 chr6D 82.474 291 44 4 1991 2280 456302336 456302052 6.360000e-62 248.0
40 TraesCS5D01G491700 chr6D 97.727 44 1 0 2280 2323 275944138 275944181 3.180000e-10 76.8
41 TraesCS5D01G491700 chr4B 79.813 535 100 6 2326 2856 481491611 481492141 1.670000e-102 383.0
42 TraesCS5D01G491700 chr4A 94.894 235 11 1 2 236 722504322 722504555 1.680000e-97 366.0
43 TraesCS5D01G491700 chr4A 92.437 238 18 0 2 239 43225828 43225591 1.020000e-89 340.0
44 TraesCS5D01G491700 chr2B 93.724 239 14 1 1 239 51941566 51941803 1.010000e-94 357.0
45 TraesCS5D01G491700 chr3A 93.671 237 14 1 2 238 170741046 170741281 1.310000e-93 353.0
46 TraesCS5D01G491700 chr3A 81.570 293 38 10 1991 2280 163905859 163905580 8.290000e-56 228.0
47 TraesCS5D01G491700 chr2A 91.903 247 17 3 2 247 142739016 142739260 2.840000e-90 342.0
48 TraesCS5D01G491700 chr2A 92.340 235 18 0 2 236 721656670 721656436 4.750000e-88 335.0
49 TraesCS5D01G491700 chr2D 94.924 197 9 1 237 432 50972932 50973128 1.030000e-79 307.0
50 TraesCS5D01G491700 chr2D 93.909 197 11 1 237 432 80662582 80662778 2.240000e-76 296.0
51 TraesCS5D01G491700 chr7D 92.118 203 15 1 237 438 24406399 24406601 4.850000e-73 285.0
52 TraesCS5D01G491700 chr7D 97.619 42 1 0 2282 2323 354596 354555 4.110000e-09 73.1
53 TraesCS5D01G491700 chr3D 91.878 197 15 1 237 432 601507669 601507865 1.050000e-69 274.0
54 TraesCS5D01G491700 chr3D 90.500 200 17 2 237 434 862372 862571 2.270000e-66 263.0
55 TraesCS5D01G491700 chr7A 81.550 271 36 9 1992 2258 51560732 51560472 8.350000e-51 211.0
56 TraesCS5D01G491700 chr1A 75.169 443 91 8 2349 2777 404429876 404430313 1.090000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G491700 chr5D 525387383 525390354 2971 False 5489.0 5489 100.0000 1 2972 1 chr5D.!!$F5 2971
1 TraesCS5D01G491700 chr5D 23870316 23872948 2632 False 1768.0 1825 91.9290 433 2972 2 chr5D.!!$F6 2539
2 TraesCS5D01G491700 chr5B 659747480 659749028 1548 False 1661.0 1661 86.7340 432 1940 1 chr5B.!!$F2 1508
3 TraesCS5D01G491700 chr5A 651790618 651792119 1501 False 774.5 1402 88.0355 602 2972 2 chr5A.!!$F3 2370
4 TraesCS5D01G491700 chr4B 481491611 481492141 530 False 383.0 383 79.8130 2326 2856 1 chr4B.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.028770 CCGTGCAGCGACAAAGAAAA 59.971 50.0 9.75 0.0 44.77 2.29 F
270 271 0.105778 GAGCATTCGAAGGGAGGGAG 59.894 60.0 12.28 0.0 0.00 4.30 F
1152 1233 0.108424 GACGAAGCACCAGAGAGCAT 60.108 55.0 0.00 0.0 31.08 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1460 0.107214 TATTCTTGGGCTTGGCGGAG 60.107 55.0 0.0 0.0 0.00 4.63 R
1389 1479 0.248843 GCCTGCTTCTGCTCTGTAGT 59.751 55.0 0.0 0.0 40.48 2.73 R
2324 2498 0.814010 ATGTCTTAATCGTGCGGGGC 60.814 55.0 0.0 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.862711 AAAGTACTTTTCTTGTAGGCTGAC 57.137 37.500 15.22 0.00 0.00 3.51
25 26 5.546621 AGTACTTTTCTTGTAGGCTGACA 57.453 39.130 0.00 0.00 0.00 3.58
26 27 5.925509 AGTACTTTTCTTGTAGGCTGACAA 58.074 37.500 0.00 3.43 36.98 3.18
27 28 6.354130 AGTACTTTTCTTGTAGGCTGACAAA 58.646 36.000 0.00 0.00 38.80 2.83
28 29 6.826741 AGTACTTTTCTTGTAGGCTGACAAAA 59.173 34.615 0.00 0.00 38.80 2.44
29 30 6.524101 ACTTTTCTTGTAGGCTGACAAAAA 57.476 33.333 0.00 2.73 38.80 1.94
30 31 7.112452 ACTTTTCTTGTAGGCTGACAAAAAT 57.888 32.000 0.00 0.00 38.80 1.82
31 32 8.232913 ACTTTTCTTGTAGGCTGACAAAAATA 57.767 30.769 0.00 0.00 38.80 1.40
32 33 8.691797 ACTTTTCTTGTAGGCTGACAAAAATAA 58.308 29.630 0.00 0.00 38.80 1.40
33 34 8.865590 TTTTCTTGTAGGCTGACAAAAATAAC 57.134 30.769 0.00 0.00 38.80 1.89
34 35 7.817418 TTCTTGTAGGCTGACAAAAATAACT 57.183 32.000 0.00 0.00 38.80 2.24
35 36 8.911918 TTCTTGTAGGCTGACAAAAATAACTA 57.088 30.769 0.00 0.00 38.80 2.24
36 37 8.911918 TCTTGTAGGCTGACAAAAATAACTAA 57.088 30.769 0.00 0.00 38.80 2.24
37 38 9.344772 TCTTGTAGGCTGACAAAAATAACTAAA 57.655 29.630 0.00 0.00 38.80 1.85
38 39 9.959749 CTTGTAGGCTGACAAAAATAACTAAAA 57.040 29.630 0.00 0.00 38.80 1.52
59 60 3.775661 AAACACACTCGGAAAACTTGG 57.224 42.857 0.00 0.00 0.00 3.61
60 61 1.675552 ACACACTCGGAAAACTTGGG 58.324 50.000 0.00 0.00 0.00 4.12
61 62 0.310854 CACACTCGGAAAACTTGGGC 59.689 55.000 0.00 0.00 0.00 5.36
62 63 0.182775 ACACTCGGAAAACTTGGGCT 59.817 50.000 0.00 0.00 0.00 5.19
63 64 0.593128 CACTCGGAAAACTTGGGCTG 59.407 55.000 0.00 0.00 0.00 4.85
64 65 1.172812 ACTCGGAAAACTTGGGCTGC 61.173 55.000 0.00 0.00 0.00 5.25
65 66 1.152860 TCGGAAAACTTGGGCTGCA 60.153 52.632 0.50 0.00 0.00 4.41
66 67 1.007387 CGGAAAACTTGGGCTGCAC 60.007 57.895 0.50 0.00 0.00 4.57
67 68 1.733402 CGGAAAACTTGGGCTGCACA 61.733 55.000 0.00 0.00 0.00 4.57
68 69 0.681175 GGAAAACTTGGGCTGCACAT 59.319 50.000 4.95 0.00 0.00 3.21
69 70 1.337167 GGAAAACTTGGGCTGCACATC 60.337 52.381 4.95 0.00 0.00 3.06
70 71 1.340889 GAAAACTTGGGCTGCACATCA 59.659 47.619 4.95 0.00 0.00 3.07
71 72 1.412079 AAACTTGGGCTGCACATCAA 58.588 45.000 4.95 1.22 0.00 2.57
72 73 1.412079 AACTTGGGCTGCACATCAAA 58.588 45.000 4.95 0.00 0.00 2.69
73 74 0.963962 ACTTGGGCTGCACATCAAAG 59.036 50.000 4.95 2.01 0.00 2.77
74 75 0.245539 CTTGGGCTGCACATCAAAGG 59.754 55.000 4.95 0.00 0.00 3.11
75 76 1.186917 TTGGGCTGCACATCAAAGGG 61.187 55.000 4.95 0.00 0.00 3.95
76 77 1.304381 GGGCTGCACATCAAAGGGA 60.304 57.895 0.50 0.00 0.00 4.20
77 78 0.899717 GGGCTGCACATCAAAGGGAA 60.900 55.000 0.50 0.00 0.00 3.97
78 79 0.244721 GGCTGCACATCAAAGGGAAC 59.755 55.000 0.50 0.00 0.00 3.62
79 80 0.961019 GCTGCACATCAAAGGGAACA 59.039 50.000 0.00 0.00 0.00 3.18
80 81 1.340889 GCTGCACATCAAAGGGAACAA 59.659 47.619 0.00 0.00 0.00 2.83
81 82 2.608752 GCTGCACATCAAAGGGAACAAG 60.609 50.000 0.00 0.00 0.00 3.16
82 83 1.962807 TGCACATCAAAGGGAACAAGG 59.037 47.619 0.00 0.00 0.00 3.61
83 84 1.337167 GCACATCAAAGGGAACAAGGC 60.337 52.381 0.00 0.00 0.00 4.35
84 85 1.273327 CACATCAAAGGGAACAAGGCC 59.727 52.381 0.00 0.00 0.00 5.19
85 86 0.897621 CATCAAAGGGAACAAGGCCC 59.102 55.000 0.00 0.00 46.40 5.80
90 91 4.423231 GGGAACAAGGCCCAGAAG 57.577 61.111 0.00 0.00 45.31 2.85
91 92 1.767692 GGGAACAAGGCCCAGAAGA 59.232 57.895 0.00 0.00 45.31 2.87
92 93 0.112412 GGGAACAAGGCCCAGAAGAA 59.888 55.000 0.00 0.00 45.31 2.52
93 94 1.480498 GGGAACAAGGCCCAGAAGAAA 60.480 52.381 0.00 0.00 45.31 2.52
94 95 2.316108 GGAACAAGGCCCAGAAGAAAA 58.684 47.619 0.00 0.00 0.00 2.29
95 96 2.698274 GGAACAAGGCCCAGAAGAAAAA 59.302 45.455 0.00 0.00 0.00 1.94
96 97 3.324846 GGAACAAGGCCCAGAAGAAAAAT 59.675 43.478 0.00 0.00 0.00 1.82
97 98 4.526650 GGAACAAGGCCCAGAAGAAAAATA 59.473 41.667 0.00 0.00 0.00 1.40
98 99 5.011635 GGAACAAGGCCCAGAAGAAAAATAA 59.988 40.000 0.00 0.00 0.00 1.40
99 100 6.463755 GGAACAAGGCCCAGAAGAAAAATAAA 60.464 38.462 0.00 0.00 0.00 1.40
100 101 6.493189 ACAAGGCCCAGAAGAAAAATAAAA 57.507 33.333 0.00 0.00 0.00 1.52
101 102 6.524734 ACAAGGCCCAGAAGAAAAATAAAAG 58.475 36.000 0.00 0.00 0.00 2.27
102 103 6.326323 ACAAGGCCCAGAAGAAAAATAAAAGA 59.674 34.615 0.00 0.00 0.00 2.52
103 104 6.994421 AGGCCCAGAAGAAAAATAAAAGAA 57.006 33.333 0.00 0.00 0.00 2.52
104 105 7.373617 AGGCCCAGAAGAAAAATAAAAGAAA 57.626 32.000 0.00 0.00 0.00 2.52
105 106 7.445121 AGGCCCAGAAGAAAAATAAAAGAAAG 58.555 34.615 0.00 0.00 0.00 2.62
106 107 6.650807 GGCCCAGAAGAAAAATAAAAGAAAGG 59.349 38.462 0.00 0.00 0.00 3.11
107 108 6.147821 GCCCAGAAGAAAAATAAAAGAAAGGC 59.852 38.462 0.00 0.00 0.00 4.35
108 109 7.445121 CCCAGAAGAAAAATAAAAGAAAGGCT 58.555 34.615 0.00 0.00 0.00 4.58
109 110 7.600375 CCCAGAAGAAAAATAAAAGAAAGGCTC 59.400 37.037 0.00 0.00 0.00 4.70
110 111 8.363390 CCAGAAGAAAAATAAAAGAAAGGCTCT 58.637 33.333 0.00 0.00 35.13 4.09
111 112 9.404348 CAGAAGAAAAATAAAAGAAAGGCTCTC 57.596 33.333 0.00 0.00 31.02 3.20
112 113 9.360901 AGAAGAAAAATAAAAGAAAGGCTCTCT 57.639 29.630 0.00 0.00 31.02 3.10
113 114 9.619316 GAAGAAAAATAAAAGAAAGGCTCTCTC 57.381 33.333 0.00 0.00 31.02 3.20
114 115 8.697507 AGAAAAATAAAAGAAAGGCTCTCTCA 57.302 30.769 0.00 0.00 31.02 3.27
115 116 9.306777 AGAAAAATAAAAGAAAGGCTCTCTCAT 57.693 29.630 0.00 0.00 31.02 2.90
116 117 9.566530 GAAAAATAAAAGAAAGGCTCTCTCATC 57.433 33.333 0.00 0.00 31.02 2.92
117 118 8.876303 AAAATAAAAGAAAGGCTCTCTCATCT 57.124 30.769 0.00 0.00 31.02 2.90
118 119 8.504812 AAATAAAAGAAAGGCTCTCTCATCTC 57.495 34.615 0.00 0.00 31.02 2.75
119 120 4.486125 AAAGAAAGGCTCTCTCATCTCC 57.514 45.455 0.00 0.00 31.02 3.71
120 121 3.113191 AGAAAGGCTCTCTCATCTCCA 57.887 47.619 0.00 0.00 0.00 3.86
121 122 2.765699 AGAAAGGCTCTCTCATCTCCAC 59.234 50.000 0.00 0.00 0.00 4.02
122 123 1.494960 AAGGCTCTCTCATCTCCACC 58.505 55.000 0.00 0.00 0.00 4.61
123 124 0.754957 AGGCTCTCTCATCTCCACCG 60.755 60.000 0.00 0.00 0.00 4.94
124 125 1.739049 GCTCTCTCATCTCCACCGG 59.261 63.158 0.00 0.00 0.00 5.28
125 126 1.739049 CTCTCTCATCTCCACCGGC 59.261 63.158 0.00 0.00 0.00 6.13
126 127 1.743321 CTCTCTCATCTCCACCGGCC 61.743 65.000 0.00 0.00 0.00 6.13
127 128 2.764128 TCTCATCTCCACCGGCCC 60.764 66.667 0.00 0.00 0.00 5.80
128 129 4.227134 CTCATCTCCACCGGCCCG 62.227 72.222 0.00 0.00 0.00 6.13
130 131 4.838152 CATCTCCACCGGCCCGTG 62.838 72.222 16.41 16.41 0.00 4.94
141 142 4.389576 GCCCGTGCAGCGACAAAG 62.390 66.667 9.75 0.00 44.77 2.77
142 143 2.664851 CCCGTGCAGCGACAAAGA 60.665 61.111 9.75 0.00 44.77 2.52
143 144 2.250939 CCCGTGCAGCGACAAAGAA 61.251 57.895 9.75 0.00 44.77 2.52
144 145 1.646540 CCGTGCAGCGACAAAGAAA 59.353 52.632 9.75 0.00 44.77 2.52
145 146 0.028770 CCGTGCAGCGACAAAGAAAA 59.971 50.000 9.75 0.00 44.77 2.29
146 147 1.334960 CCGTGCAGCGACAAAGAAAAT 60.335 47.619 9.75 0.00 44.77 1.82
147 148 2.095969 CCGTGCAGCGACAAAGAAAATA 60.096 45.455 9.75 0.00 44.77 1.40
148 149 3.155998 CGTGCAGCGACAAAGAAAATAG 58.844 45.455 3.04 0.00 44.77 1.73
149 150 2.911102 GTGCAGCGACAAAGAAAATAGC 59.089 45.455 0.00 0.00 0.00 2.97
150 151 2.813754 TGCAGCGACAAAGAAAATAGCT 59.186 40.909 0.00 0.00 0.00 3.32
152 153 3.751621 CAGCGACAAAGAAAATAGCTGG 58.248 45.455 0.00 0.00 44.60 4.85
153 154 3.189287 CAGCGACAAAGAAAATAGCTGGT 59.811 43.478 0.00 0.00 44.60 4.00
154 155 3.821033 AGCGACAAAGAAAATAGCTGGTT 59.179 39.130 0.00 0.00 31.76 3.67
155 156 4.083271 AGCGACAAAGAAAATAGCTGGTTC 60.083 41.667 0.00 0.00 31.76 3.62
156 157 4.394795 CGACAAAGAAAATAGCTGGTTCG 58.605 43.478 0.00 0.00 0.00 3.95
157 158 4.151689 CGACAAAGAAAATAGCTGGTTCGA 59.848 41.667 0.00 0.00 0.00 3.71
158 159 5.613358 ACAAAGAAAATAGCTGGTTCGAG 57.387 39.130 0.00 0.00 0.00 4.04
159 160 4.083271 ACAAAGAAAATAGCTGGTTCGAGC 60.083 41.667 0.00 0.00 39.46 5.03
160 161 2.633488 AGAAAATAGCTGGTTCGAGCC 58.367 47.619 11.99 11.99 40.08 4.70
161 162 2.027192 AGAAAATAGCTGGTTCGAGCCA 60.027 45.455 20.61 20.61 40.08 4.75
162 163 2.489938 AAATAGCTGGTTCGAGCCAA 57.510 45.000 22.07 8.06 40.08 4.52
163 164 1.739067 AATAGCTGGTTCGAGCCAAC 58.261 50.000 22.07 17.63 40.08 3.77
164 165 0.460284 ATAGCTGGTTCGAGCCAACG 60.460 55.000 22.07 12.43 40.08 4.10
165 166 1.812686 TAGCTGGTTCGAGCCAACGT 61.813 55.000 22.07 11.53 40.08 3.99
166 167 1.373748 GCTGGTTCGAGCCAACGTA 60.374 57.895 22.07 0.00 38.18 3.57
167 168 1.623973 GCTGGTTCGAGCCAACGTAC 61.624 60.000 22.07 5.90 38.18 3.67
168 169 0.319211 CTGGTTCGAGCCAACGTACA 60.319 55.000 22.07 0.00 38.18 2.90
169 170 0.598158 TGGTTCGAGCCAACGTACAC 60.598 55.000 19.64 0.00 35.81 2.90
170 171 1.611592 GGTTCGAGCCAACGTACACG 61.612 60.000 14.14 0.00 46.33 4.49
180 181 4.769657 CGTACACGTACATGCGGA 57.230 55.556 8.02 0.00 35.87 5.54
181 182 3.245443 CGTACACGTACATGCGGAT 57.755 52.632 8.02 0.00 35.87 4.18
182 183 1.552226 CGTACACGTACATGCGGATT 58.448 50.000 8.02 0.00 35.87 3.01
183 184 1.254313 CGTACACGTACATGCGGATTG 59.746 52.381 8.02 0.00 35.87 2.67
184 185 2.264813 GTACACGTACATGCGGATTGT 58.735 47.619 2.45 0.00 36.15 2.71
185 186 1.355971 ACACGTACATGCGGATTGTC 58.644 50.000 0.00 0.00 35.98 3.18
186 187 1.337354 ACACGTACATGCGGATTGTCA 60.337 47.619 0.00 0.00 35.98 3.58
187 188 1.933181 CACGTACATGCGGATTGTCAT 59.067 47.619 0.00 0.00 35.98 3.06
188 189 2.033747 CACGTACATGCGGATTGTCATC 60.034 50.000 0.00 0.00 35.98 2.92
189 190 1.190103 CGTACATGCGGATTGTCATCG 59.810 52.381 0.00 0.00 0.00 3.84
190 191 2.469826 GTACATGCGGATTGTCATCGA 58.530 47.619 0.00 0.00 0.00 3.59
191 192 1.290203 ACATGCGGATTGTCATCGAC 58.710 50.000 0.00 0.00 0.00 4.20
192 193 1.134699 ACATGCGGATTGTCATCGACT 60.135 47.619 0.00 0.00 33.15 4.18
193 194 1.259770 CATGCGGATTGTCATCGACTG 59.740 52.381 0.00 0.00 33.15 3.51
194 195 0.530288 TGCGGATTGTCATCGACTGA 59.470 50.000 0.00 0.00 33.15 3.41
195 196 1.203928 GCGGATTGTCATCGACTGAG 58.796 55.000 0.00 0.00 33.51 3.35
196 197 1.202302 GCGGATTGTCATCGACTGAGA 60.202 52.381 0.00 0.00 33.51 3.27
197 198 2.455032 CGGATTGTCATCGACTGAGAC 58.545 52.381 0.00 0.00 33.51 3.36
198 199 2.098280 CGGATTGTCATCGACTGAGACT 59.902 50.000 9.56 0.00 33.51 3.24
199 200 3.428180 CGGATTGTCATCGACTGAGACTT 60.428 47.826 9.56 0.26 33.51 3.01
200 201 4.109050 GGATTGTCATCGACTGAGACTTC 58.891 47.826 9.56 7.12 33.51 3.01
201 202 2.902065 TGTCATCGACTGAGACTTCG 57.098 50.000 9.56 0.00 33.51 3.79
202 203 1.135660 TGTCATCGACTGAGACTTCGC 60.136 52.381 9.56 0.00 33.51 4.70
203 204 0.452184 TCATCGACTGAGACTTCGCC 59.548 55.000 0.00 0.00 35.15 5.54
204 205 0.171231 CATCGACTGAGACTTCGCCA 59.829 55.000 0.00 0.00 35.15 5.69
205 206 0.888619 ATCGACTGAGACTTCGCCAA 59.111 50.000 0.00 0.00 35.15 4.52
206 207 0.671796 TCGACTGAGACTTCGCCAAA 59.328 50.000 0.00 0.00 35.15 3.28
207 208 1.067974 TCGACTGAGACTTCGCCAAAA 59.932 47.619 0.00 0.00 35.15 2.44
208 209 1.864711 CGACTGAGACTTCGCCAAAAA 59.135 47.619 0.00 0.00 0.00 1.94
209 210 2.480419 CGACTGAGACTTCGCCAAAAAT 59.520 45.455 0.00 0.00 0.00 1.82
210 211 3.058914 CGACTGAGACTTCGCCAAAAATT 60.059 43.478 0.00 0.00 0.00 1.82
211 212 4.151689 CGACTGAGACTTCGCCAAAAATTA 59.848 41.667 0.00 0.00 0.00 1.40
212 213 5.613358 ACTGAGACTTCGCCAAAAATTAG 57.387 39.130 0.00 0.00 0.00 1.73
213 214 5.063880 ACTGAGACTTCGCCAAAAATTAGT 58.936 37.500 0.00 0.00 0.00 2.24
214 215 5.179555 ACTGAGACTTCGCCAAAAATTAGTC 59.820 40.000 0.00 0.00 33.86 2.59
215 216 4.151689 TGAGACTTCGCCAAAAATTAGTCG 59.848 41.667 0.00 0.00 37.62 4.18
216 217 4.312443 AGACTTCGCCAAAAATTAGTCGA 58.688 39.130 0.00 0.00 37.62 4.20
217 218 4.151867 AGACTTCGCCAAAAATTAGTCGAC 59.848 41.667 7.70 7.70 37.62 4.20
218 219 4.062991 ACTTCGCCAAAAATTAGTCGACT 58.937 39.130 23.66 23.66 0.00 4.18
219 220 4.084013 ACTTCGCCAAAAATTAGTCGACTG 60.084 41.667 28.12 9.95 0.00 3.51
220 221 3.655486 TCGCCAAAAATTAGTCGACTGA 58.345 40.909 28.12 20.78 0.00 3.41
221 222 4.250464 TCGCCAAAAATTAGTCGACTGAT 58.750 39.130 28.12 22.18 0.00 2.90
222 223 5.412640 TCGCCAAAAATTAGTCGACTGATA 58.587 37.500 28.12 13.27 0.00 2.15
223 224 6.046593 TCGCCAAAAATTAGTCGACTGATAT 58.953 36.000 28.12 14.42 0.00 1.63
224 225 6.537301 TCGCCAAAAATTAGTCGACTGATATT 59.463 34.615 28.12 18.95 0.00 1.28
225 226 7.065324 TCGCCAAAAATTAGTCGACTGATATTT 59.935 33.333 28.12 23.25 0.00 1.40
226 227 8.332464 CGCCAAAAATTAGTCGACTGATATTTA 58.668 33.333 28.12 2.72 0.00 1.40
227 228 9.651718 GCCAAAAATTAGTCGACTGATATTTAG 57.348 33.333 28.12 20.61 0.00 1.85
233 234 9.680315 AATTAGTCGACTGATATTTAGTGTAGC 57.320 33.333 28.12 0.00 0.00 3.58
234 235 6.074544 AGTCGACTGATATTTAGTGTAGCC 57.925 41.667 19.30 0.00 0.00 3.93
235 236 4.910456 GTCGACTGATATTTAGTGTAGCCG 59.090 45.833 8.70 0.00 0.00 5.52
236 237 4.577693 TCGACTGATATTTAGTGTAGCCGT 59.422 41.667 0.00 0.00 0.00 5.68
237 238 5.066893 TCGACTGATATTTAGTGTAGCCGTT 59.933 40.000 0.00 0.00 0.00 4.44
238 239 5.747197 CGACTGATATTTAGTGTAGCCGTTT 59.253 40.000 0.00 0.00 0.00 3.60
239 240 6.914215 CGACTGATATTTAGTGTAGCCGTTTA 59.086 38.462 0.00 0.00 0.00 2.01
240 241 7.594015 CGACTGATATTTAGTGTAGCCGTTTAT 59.406 37.037 0.00 0.00 0.00 1.40
241 242 8.589335 ACTGATATTTAGTGTAGCCGTTTATG 57.411 34.615 0.00 0.00 0.00 1.90
242 243 8.202137 ACTGATATTTAGTGTAGCCGTTTATGT 58.798 33.333 0.00 0.00 0.00 2.29
243 244 9.687210 CTGATATTTAGTGTAGCCGTTTATGTA 57.313 33.333 0.00 0.00 0.00 2.29
247 248 8.782339 ATTTAGTGTAGCCGTTTATGTAAAGT 57.218 30.769 0.00 0.00 0.00 2.66
248 249 9.874205 ATTTAGTGTAGCCGTTTATGTAAAGTA 57.126 29.630 0.00 0.00 0.00 2.24
249 250 8.915871 TTAGTGTAGCCGTTTATGTAAAGTAG 57.084 34.615 0.00 0.00 0.00 2.57
250 251 6.335777 AGTGTAGCCGTTTATGTAAAGTAGG 58.664 40.000 0.00 0.00 0.00 3.18
251 252 5.521372 GTGTAGCCGTTTATGTAAAGTAGGG 59.479 44.000 0.00 0.00 0.00 3.53
252 253 5.421693 TGTAGCCGTTTATGTAAAGTAGGGA 59.578 40.000 0.00 0.00 0.00 4.20
253 254 5.019785 AGCCGTTTATGTAAAGTAGGGAG 57.980 43.478 0.00 0.00 0.00 4.30
254 255 3.558829 GCCGTTTATGTAAAGTAGGGAGC 59.441 47.826 0.00 0.00 0.00 4.70
255 256 4.761975 CCGTTTATGTAAAGTAGGGAGCA 58.238 43.478 0.00 0.00 0.00 4.26
256 257 5.365619 CCGTTTATGTAAAGTAGGGAGCAT 58.634 41.667 0.00 0.00 0.00 3.79
257 258 5.820947 CCGTTTATGTAAAGTAGGGAGCATT 59.179 40.000 0.00 0.00 0.00 3.56
258 259 6.018180 CCGTTTATGTAAAGTAGGGAGCATTC 60.018 42.308 0.00 0.00 0.00 2.67
259 260 6.292168 CGTTTATGTAAAGTAGGGAGCATTCG 60.292 42.308 0.00 0.00 0.00 3.34
260 261 6.474140 TTATGTAAAGTAGGGAGCATTCGA 57.526 37.500 0.00 0.00 0.00 3.71
261 262 4.811969 TGTAAAGTAGGGAGCATTCGAA 57.188 40.909 0.00 0.00 0.00 3.71
262 263 4.755411 TGTAAAGTAGGGAGCATTCGAAG 58.245 43.478 3.35 0.00 0.00 3.79
263 264 2.990066 AAGTAGGGAGCATTCGAAGG 57.010 50.000 5.24 5.24 0.00 3.46
264 265 1.123928 AGTAGGGAGCATTCGAAGGG 58.876 55.000 12.28 3.56 0.00 3.95
265 266 1.120530 GTAGGGAGCATTCGAAGGGA 58.879 55.000 12.28 0.00 0.00 4.20
266 267 1.069358 GTAGGGAGCATTCGAAGGGAG 59.931 57.143 12.28 0.00 0.00 4.30
267 268 1.147153 GGGAGCATTCGAAGGGAGG 59.853 63.158 12.28 0.00 0.00 4.30
268 269 1.147153 GGAGCATTCGAAGGGAGGG 59.853 63.158 12.28 0.00 0.00 4.30
269 270 1.338136 GGAGCATTCGAAGGGAGGGA 61.338 60.000 12.28 0.00 0.00 4.20
270 271 0.105778 GAGCATTCGAAGGGAGGGAG 59.894 60.000 12.28 0.00 0.00 4.30
271 272 0.325671 AGCATTCGAAGGGAGGGAGA 60.326 55.000 12.28 0.00 0.00 3.71
272 273 0.179070 GCATTCGAAGGGAGGGAGAC 60.179 60.000 12.28 0.00 0.00 3.36
273 274 1.195115 CATTCGAAGGGAGGGAGACA 58.805 55.000 3.35 0.00 0.00 3.41
274 275 1.555075 CATTCGAAGGGAGGGAGACAA 59.445 52.381 3.35 0.00 0.00 3.18
275 276 1.267121 TTCGAAGGGAGGGAGACAAG 58.733 55.000 0.00 0.00 0.00 3.16
276 277 0.408309 TCGAAGGGAGGGAGACAAGA 59.592 55.000 0.00 0.00 0.00 3.02
277 278 1.007238 TCGAAGGGAGGGAGACAAGAT 59.993 52.381 0.00 0.00 0.00 2.40
278 279 2.243994 TCGAAGGGAGGGAGACAAGATA 59.756 50.000 0.00 0.00 0.00 1.98
279 280 2.362717 CGAAGGGAGGGAGACAAGATAC 59.637 54.545 0.00 0.00 0.00 2.24
280 281 3.648739 GAAGGGAGGGAGACAAGATACT 58.351 50.000 0.00 0.00 0.00 2.12
281 282 3.786213 AGGGAGGGAGACAAGATACTT 57.214 47.619 0.00 0.00 0.00 2.24
282 283 4.081695 AGGGAGGGAGACAAGATACTTT 57.918 45.455 0.00 0.00 0.00 2.66
283 284 4.439860 AGGGAGGGAGACAAGATACTTTT 58.560 43.478 0.00 0.00 0.00 2.27
284 285 4.471747 AGGGAGGGAGACAAGATACTTTTC 59.528 45.833 0.00 0.00 0.00 2.29
285 286 4.471747 GGGAGGGAGACAAGATACTTTTCT 59.528 45.833 0.00 0.00 0.00 2.52
286 287 5.045505 GGGAGGGAGACAAGATACTTTTCTT 60.046 44.000 0.00 0.00 36.38 2.52
287 288 6.477253 GGAGGGAGACAAGATACTTTTCTTT 58.523 40.000 0.00 0.00 33.69 2.52
288 289 6.943146 GGAGGGAGACAAGATACTTTTCTTTT 59.057 38.462 0.00 0.00 33.69 2.27
289 290 7.448777 GGAGGGAGACAAGATACTTTTCTTTTT 59.551 37.037 0.00 0.00 33.69 1.94
312 313 9.967451 TTTTTATAGTGTAATGATGACAAGGGA 57.033 29.630 0.00 0.00 0.00 4.20
314 315 9.559732 TTTATAGTGTAATGATGACAAGGGATG 57.440 33.333 0.00 0.00 0.00 3.51
315 316 4.202441 AGTGTAATGATGACAAGGGATGC 58.798 43.478 0.00 0.00 0.00 3.91
316 317 4.080129 AGTGTAATGATGACAAGGGATGCT 60.080 41.667 0.00 0.00 0.00 3.79
317 318 5.130975 AGTGTAATGATGACAAGGGATGCTA 59.869 40.000 0.00 0.00 0.00 3.49
318 319 5.822519 GTGTAATGATGACAAGGGATGCTAA 59.177 40.000 0.00 0.00 0.00 3.09
319 320 6.488006 GTGTAATGATGACAAGGGATGCTAAT 59.512 38.462 0.00 0.00 0.00 1.73
320 321 7.013655 GTGTAATGATGACAAGGGATGCTAATT 59.986 37.037 0.00 0.00 0.00 1.40
321 322 8.217111 TGTAATGATGACAAGGGATGCTAATTA 58.783 33.333 0.00 0.00 0.00 1.40
322 323 7.516198 AATGATGACAAGGGATGCTAATTAC 57.484 36.000 0.00 0.00 0.00 1.89
323 324 5.376625 TGATGACAAGGGATGCTAATTACC 58.623 41.667 0.00 0.00 0.00 2.85
324 325 5.132648 TGATGACAAGGGATGCTAATTACCT 59.867 40.000 0.00 0.00 0.00 3.08
325 326 5.450818 TGACAAGGGATGCTAATTACCTT 57.549 39.130 0.00 0.00 41.97 3.50
326 327 5.826643 TGACAAGGGATGCTAATTACCTTT 58.173 37.500 2.37 0.00 39.40 3.11
327 328 6.252995 TGACAAGGGATGCTAATTACCTTTT 58.747 36.000 2.37 0.00 39.40 2.27
328 329 7.406916 TGACAAGGGATGCTAATTACCTTTTA 58.593 34.615 2.37 0.00 39.40 1.52
329 330 8.058847 TGACAAGGGATGCTAATTACCTTTTAT 58.941 33.333 2.37 0.00 39.40 1.40
330 331 8.237811 ACAAGGGATGCTAATTACCTTTTATG 57.762 34.615 2.37 0.00 39.40 1.90
331 332 8.058847 ACAAGGGATGCTAATTACCTTTTATGA 58.941 33.333 2.37 0.00 39.40 2.15
332 333 9.082313 CAAGGGATGCTAATTACCTTTTATGAT 57.918 33.333 2.37 0.00 39.40 2.45
334 335 9.965902 AGGGATGCTAATTACCTTTTATGATAG 57.034 33.333 0.00 0.00 0.00 2.08
335 336 9.178758 GGGATGCTAATTACCTTTTATGATAGG 57.821 37.037 0.00 0.00 37.56 2.57
336 337 8.678199 GGATGCTAATTACCTTTTATGATAGGC 58.322 37.037 0.00 0.00 34.79 3.93
337 338 7.996098 TGCTAATTACCTTTTATGATAGGCC 57.004 36.000 0.00 0.00 34.79 5.19
338 339 7.755618 TGCTAATTACCTTTTATGATAGGCCT 58.244 34.615 11.78 11.78 34.79 5.19
339 340 7.665559 TGCTAATTACCTTTTATGATAGGCCTG 59.334 37.037 17.99 0.00 34.79 4.85
340 341 6.901081 AATTACCTTTTATGATAGGCCTGC 57.099 37.500 17.99 8.14 34.79 4.85
341 342 5.646692 TTACCTTTTATGATAGGCCTGCT 57.353 39.130 17.99 1.48 34.79 4.24
342 343 4.092116 ACCTTTTATGATAGGCCTGCTC 57.908 45.455 17.99 12.93 34.79 4.26
343 344 3.070018 CCTTTTATGATAGGCCTGCTCG 58.930 50.000 17.99 0.00 0.00 5.03
344 345 2.839486 TTTATGATAGGCCTGCTCGG 57.161 50.000 17.99 0.00 0.00 4.63
345 346 2.009681 TTATGATAGGCCTGCTCGGA 57.990 50.000 17.99 0.00 33.16 4.55
346 347 1.257743 TATGATAGGCCTGCTCGGAC 58.742 55.000 17.99 0.00 43.35 4.79
365 366 2.784596 CACCGCGTGCCATGTAAG 59.215 61.111 4.92 0.00 0.00 2.34
366 367 2.032634 CACCGCGTGCCATGTAAGT 61.033 57.895 4.92 0.00 0.00 2.24
367 368 1.302192 ACCGCGTGCCATGTAAGTT 60.302 52.632 4.92 0.00 0.00 2.66
368 369 0.887387 ACCGCGTGCCATGTAAGTTT 60.887 50.000 4.92 0.00 0.00 2.66
369 370 0.239879 CCGCGTGCCATGTAAGTTTT 59.760 50.000 4.92 0.00 0.00 2.43
370 371 1.335506 CCGCGTGCCATGTAAGTTTTT 60.336 47.619 4.92 0.00 0.00 1.94
387 388 3.595709 TTTTTGCCGTATATAGCGTGC 57.404 42.857 4.72 7.24 0.00 5.34
388 389 1.133407 TTTGCCGTATATAGCGTGCG 58.867 50.000 4.72 0.00 0.00 5.34
389 390 1.279527 TTGCCGTATATAGCGTGCGC 61.280 55.000 8.67 8.67 42.33 6.09
401 402 3.121030 GTGCGCTTGCGAGTCCAT 61.121 61.111 19.55 0.00 43.34 3.41
402 403 2.358615 TGCGCTTGCGAGTCCATT 60.359 55.556 19.55 0.00 43.34 3.16
403 404 2.099062 GCGCTTGCGAGTCCATTG 59.901 61.111 19.55 0.00 0.00 2.82
404 405 2.390599 GCGCTTGCGAGTCCATTGA 61.391 57.895 19.55 0.00 0.00 2.57
405 406 1.911293 GCGCTTGCGAGTCCATTGAA 61.911 55.000 19.55 0.00 0.00 2.69
406 407 0.516877 CGCTTGCGAGTCCATTGAAA 59.483 50.000 9.60 0.00 0.00 2.69
407 408 1.464687 CGCTTGCGAGTCCATTGAAAG 60.465 52.381 9.60 0.00 31.47 2.62
408 409 1.730446 GCTTGCGAGTCCATTGAAAGC 60.730 52.381 2.14 0.00 45.12 3.51
409 410 1.536766 CTTGCGAGTCCATTGAAAGCA 59.463 47.619 0.00 0.00 0.00 3.91
410 411 1.159285 TGCGAGTCCATTGAAAGCAG 58.841 50.000 0.00 0.00 0.00 4.24
411 412 0.179179 GCGAGTCCATTGAAAGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
412 413 1.446907 CGAGTCCATTGAAAGCAGCT 58.553 50.000 0.00 0.00 0.00 4.24
413 414 1.396301 CGAGTCCATTGAAAGCAGCTC 59.604 52.381 0.00 0.00 0.00 4.09
414 415 1.742268 GAGTCCATTGAAAGCAGCTCC 59.258 52.381 0.00 0.00 0.00 4.70
415 416 1.074405 AGTCCATTGAAAGCAGCTCCA 59.926 47.619 0.00 0.00 0.00 3.86
416 417 1.200948 GTCCATTGAAAGCAGCTCCAC 59.799 52.381 0.00 0.00 0.00 4.02
417 418 0.169672 CCATTGAAAGCAGCTCCACG 59.830 55.000 0.00 0.00 0.00 4.94
418 419 1.159285 CATTGAAAGCAGCTCCACGA 58.841 50.000 0.00 0.00 0.00 4.35
419 420 1.741706 CATTGAAAGCAGCTCCACGAT 59.258 47.619 0.00 0.00 0.00 3.73
420 421 1.896220 TTGAAAGCAGCTCCACGATT 58.104 45.000 0.00 0.00 0.00 3.34
421 422 1.442769 TGAAAGCAGCTCCACGATTC 58.557 50.000 0.00 0.00 0.00 2.52
422 423 1.270785 TGAAAGCAGCTCCACGATTCA 60.271 47.619 0.00 0.00 0.00 2.57
423 424 1.396301 GAAAGCAGCTCCACGATTCAG 59.604 52.381 0.00 0.00 0.00 3.02
424 425 0.322975 AAGCAGCTCCACGATTCAGT 59.677 50.000 0.00 0.00 0.00 3.41
425 426 1.186200 AGCAGCTCCACGATTCAGTA 58.814 50.000 0.00 0.00 0.00 2.74
426 427 1.759445 AGCAGCTCCACGATTCAGTAT 59.241 47.619 0.00 0.00 0.00 2.12
427 428 2.131183 GCAGCTCCACGATTCAGTATC 58.869 52.381 0.00 0.00 0.00 2.24
428 429 2.223923 GCAGCTCCACGATTCAGTATCT 60.224 50.000 0.00 0.00 0.00 1.98
429 430 3.379240 CAGCTCCACGATTCAGTATCTG 58.621 50.000 0.00 0.00 0.00 2.90
430 431 2.363680 AGCTCCACGATTCAGTATCTGG 59.636 50.000 0.00 0.00 35.01 3.86
431 432 2.546795 GCTCCACGATTCAGTATCTGGG 60.547 54.545 0.00 0.00 34.72 4.45
474 475 4.872124 GGTAAGGTTGGACCGTTTATACAG 59.128 45.833 0.00 0.00 44.90 2.74
475 476 4.628963 AAGGTTGGACCGTTTATACAGT 57.371 40.909 0.00 0.00 44.90 3.55
476 477 5.743636 AAGGTTGGACCGTTTATACAGTA 57.256 39.130 0.00 0.00 44.90 2.74
477 478 5.334724 AGGTTGGACCGTTTATACAGTAG 57.665 43.478 0.00 0.00 44.90 2.57
478 479 4.774200 AGGTTGGACCGTTTATACAGTAGT 59.226 41.667 0.00 0.00 44.90 2.73
479 480 5.951747 AGGTTGGACCGTTTATACAGTAGTA 59.048 40.000 0.00 0.00 44.90 1.82
480 481 6.036470 GGTTGGACCGTTTATACAGTAGTAC 58.964 44.000 0.00 0.00 31.96 2.73
515 516 1.643832 GATGCCCATTCTCGTTCGC 59.356 57.895 0.00 0.00 0.00 4.70
548 549 3.249189 GTCTGCCTGGGTGGGACA 61.249 66.667 0.00 0.00 36.00 4.02
867 900 4.154347 GACTCCTGGCCTCGCAGG 62.154 72.222 3.32 1.50 39.86 4.85
995 1032 2.802724 GCACCCAACCCAAACCCAC 61.803 63.158 0.00 0.00 0.00 4.61
1112 1193 4.405680 TGGTTGATCAGTAGTCGATCCATT 59.594 41.667 0.00 0.00 38.83 3.16
1116 1197 6.073327 TGATCAGTAGTCGATCCATTACAC 57.927 41.667 0.00 0.00 38.83 2.90
1152 1233 0.108424 GACGAAGCACCAGAGAGCAT 60.108 55.000 0.00 0.00 31.08 3.79
1370 1460 4.899239 CTCGCCGGGGATCAGCAC 62.899 72.222 22.85 0.00 0.00 4.40
1372 1462 4.899239 CGCCGGGGATCAGCACTC 62.899 72.222 14.46 0.00 0.00 3.51
1373 1463 4.554036 GCCGGGGATCAGCACTCC 62.554 72.222 2.18 0.00 0.00 3.85
1374 1464 4.227134 CCGGGGATCAGCACTCCG 62.227 72.222 0.00 0.00 40.32 4.63
1375 1465 4.899239 CGGGGATCAGCACTCCGC 62.899 72.222 0.00 6.30 41.14 5.54
1376 1466 4.554036 GGGGATCAGCACTCCGCC 62.554 72.222 0.00 0.00 44.04 6.13
1377 1467 3.785859 GGGATCAGCACTCCGCCA 61.786 66.667 0.00 0.00 44.04 5.69
1388 1478 1.379044 CTCCGCCAAGCCCAAGAAT 60.379 57.895 0.00 0.00 0.00 2.40
1389 1479 0.107214 CTCCGCCAAGCCCAAGAATA 60.107 55.000 0.00 0.00 0.00 1.75
1391 1481 0.394352 CCGCCAAGCCCAAGAATACT 60.394 55.000 0.00 0.00 0.00 2.12
1394 1484 2.679639 CGCCAAGCCCAAGAATACTACA 60.680 50.000 0.00 0.00 0.00 2.74
1408 1498 0.248843 ACTACAGAGCAGAAGCAGGC 59.751 55.000 0.00 0.00 45.49 4.85
1562 1659 5.117745 CGTCTAGATTGATGATTGGCTAACG 59.882 44.000 0.00 0.00 0.00 3.18
1563 1660 5.986135 GTCTAGATTGATGATTGGCTAACGT 59.014 40.000 0.00 0.00 0.00 3.99
1564 1661 6.480320 GTCTAGATTGATGATTGGCTAACGTT 59.520 38.462 5.88 5.88 0.00 3.99
1565 1662 7.652105 GTCTAGATTGATGATTGGCTAACGTTA 59.348 37.037 7.94 7.94 0.00 3.18
1594 1691 8.322828 AGTTCTACTAGTACAGAGTTCTGATCA 58.677 37.037 15.63 0.00 46.59 2.92
1631 1733 3.659444 CGCGACTGATTTGAAAGTTGTTC 59.341 43.478 0.00 0.00 31.46 3.18
1638 1748 5.649557 TGATTTGAAAGTTGTTCCACACTG 58.350 37.500 0.00 0.00 0.00 3.66
1765 1880 3.486584 CTGATTTGCTCGTCTCTTTTGC 58.513 45.455 0.00 0.00 0.00 3.68
1862 2026 9.844257 TCCATTTTTATTTCCACTTTGTTGATT 57.156 25.926 0.00 0.00 0.00 2.57
1863 2027 9.881529 CCATTTTTATTTCCACTTTGTTGATTG 57.118 29.630 0.00 0.00 0.00 2.67
1947 2113 1.000359 AATGCACTTAGTGGGGGCC 60.000 57.895 14.63 0.00 33.64 5.80
1969 2143 5.648572 CCAGAAAGCAAATCTTGAGATTCC 58.351 41.667 6.70 2.43 43.41 3.01
2020 2194 9.791820 TTTTCATGCTAATACATGTCTCATTTG 57.208 29.630 0.00 0.00 46.15 2.32
2087 2261 7.063308 TGACAAAATTGAAAAAGACAGCAGAAC 59.937 33.333 0.00 0.00 0.00 3.01
2094 2268 5.523916 TGAAAAAGACAGCAGAACACTAGTC 59.476 40.000 0.00 0.00 0.00 2.59
2102 2276 5.163447 ACAGCAGAACACTAGTCTTTACACA 60.163 40.000 0.00 0.00 0.00 3.72
2134 2308 7.442062 CACCAGCCAAGAAAGAAAATTACAATT 59.558 33.333 0.00 0.00 0.00 2.32
2214 2388 3.473113 AACCAATAGCTCCCACCAAAT 57.527 42.857 0.00 0.00 0.00 2.32
2226 2400 3.963374 TCCCACCAAATGAAAACATGACA 59.037 39.130 0.00 0.00 0.00 3.58
2272 2446 1.196354 GCGTCTCCATTGCTGATATGC 59.804 52.381 0.00 0.00 0.00 3.14
2300 2474 2.162809 GGCGAAACCATTACCGTTGAAT 59.837 45.455 0.00 0.00 38.86 2.57
2312 2486 1.665679 CCGTTGAATGAATCAGACCGG 59.334 52.381 0.00 0.00 39.77 5.28
2320 2494 1.303317 AATCAGACCGGGGCAACAC 60.303 57.895 6.32 0.00 39.74 3.32
2344 2547 1.539496 GCCCCGCACGATTAAGACATA 60.539 52.381 0.00 0.00 0.00 2.29
2350 2553 4.546570 CGCACGATTAAGACATATGAGGA 58.453 43.478 10.38 0.00 0.00 3.71
2352 2555 4.926238 GCACGATTAAGACATATGAGGAGG 59.074 45.833 10.38 0.00 0.00 4.30
2364 2567 0.543410 TGAGGAGGAAACCGCACCTA 60.543 55.000 0.00 0.00 36.57 3.08
2453 2656 0.760567 TGCATCCGCTCCTGGACTAT 60.761 55.000 0.00 0.00 41.85 2.12
2465 2668 2.676748 CTGGACTATCTCCCAAGCTCT 58.323 52.381 0.00 0.00 38.49 4.09
2569 2775 4.957296 TCCTTACTTGAACAGACTGGTTC 58.043 43.478 7.51 8.76 45.75 3.62
2605 2811 1.811266 CATTGGACTGGTCGCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
2666 2872 1.517832 CCCTCGTCGAAGCCAAGAT 59.482 57.895 0.00 0.00 0.00 2.40
2866 3072 1.355066 GAGAGAACGCTTTGCCTCCG 61.355 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.502696 TGTCAGCCTACAAGAAAAGTACTTTA 58.497 34.615 20.83 3.82 31.63 1.85
4 5 6.613755 TTTGTCAGCCTACAAGAAAAGTAC 57.386 37.500 2.17 0.00 40.29 2.73
5 6 7.633193 TTTTTGTCAGCCTACAAGAAAAGTA 57.367 32.000 3.18 0.00 40.29 2.24
6 7 6.524101 TTTTTGTCAGCCTACAAGAAAAGT 57.476 33.333 3.18 0.00 40.29 2.66
7 8 8.968242 GTTATTTTTGTCAGCCTACAAGAAAAG 58.032 33.333 8.27 0.00 40.29 2.27
9 10 8.232913 AGTTATTTTTGTCAGCCTACAAGAAA 57.767 30.769 8.27 8.92 40.29 2.52
10 11 7.817418 AGTTATTTTTGTCAGCCTACAAGAA 57.183 32.000 7.05 7.05 40.29 2.52
11 12 8.911918 TTAGTTATTTTTGTCAGCCTACAAGA 57.088 30.769 2.17 0.00 40.29 3.02
12 13 9.959749 TTTTAGTTATTTTTGTCAGCCTACAAG 57.040 29.630 2.17 0.00 40.29 3.16
37 38 4.490743 CCAAGTTTTCCGAGTGTGTTTTT 58.509 39.130 0.00 0.00 0.00 1.94
38 39 3.119280 CCCAAGTTTTCCGAGTGTGTTTT 60.119 43.478 0.00 0.00 0.00 2.43
39 40 2.425668 CCCAAGTTTTCCGAGTGTGTTT 59.574 45.455 0.00 0.00 0.00 2.83
40 41 2.021457 CCCAAGTTTTCCGAGTGTGTT 58.979 47.619 0.00 0.00 0.00 3.32
41 42 1.675552 CCCAAGTTTTCCGAGTGTGT 58.324 50.000 0.00 0.00 0.00 3.72
42 43 0.310854 GCCCAAGTTTTCCGAGTGTG 59.689 55.000 0.00 0.00 0.00 3.82
43 44 0.182775 AGCCCAAGTTTTCCGAGTGT 59.817 50.000 0.00 0.00 0.00 3.55
44 45 0.593128 CAGCCCAAGTTTTCCGAGTG 59.407 55.000 0.00 0.00 0.00 3.51
45 46 1.172812 GCAGCCCAAGTTTTCCGAGT 61.173 55.000 0.00 0.00 0.00 4.18
46 47 1.172180 TGCAGCCCAAGTTTTCCGAG 61.172 55.000 0.00 0.00 0.00 4.63
47 48 1.152860 TGCAGCCCAAGTTTTCCGA 60.153 52.632 0.00 0.00 0.00 4.55
48 49 1.007387 GTGCAGCCCAAGTTTTCCG 60.007 57.895 0.00 0.00 0.00 4.30
49 50 0.681175 ATGTGCAGCCCAAGTTTTCC 59.319 50.000 0.00 0.00 0.00 3.13
50 51 1.340889 TGATGTGCAGCCCAAGTTTTC 59.659 47.619 0.00 0.00 0.00 2.29
51 52 1.412079 TGATGTGCAGCCCAAGTTTT 58.588 45.000 0.00 0.00 0.00 2.43
52 53 1.412079 TTGATGTGCAGCCCAAGTTT 58.588 45.000 0.00 0.00 0.00 2.66
53 54 1.342174 CTTTGATGTGCAGCCCAAGTT 59.658 47.619 0.00 0.00 0.00 2.66
54 55 0.963962 CTTTGATGTGCAGCCCAAGT 59.036 50.000 0.00 0.00 0.00 3.16
55 56 0.245539 CCTTTGATGTGCAGCCCAAG 59.754 55.000 0.00 0.00 0.00 3.61
56 57 1.186917 CCCTTTGATGTGCAGCCCAA 61.187 55.000 0.00 0.00 0.00 4.12
57 58 1.607178 CCCTTTGATGTGCAGCCCA 60.607 57.895 0.00 0.00 0.00 5.36
58 59 0.899717 TTCCCTTTGATGTGCAGCCC 60.900 55.000 0.00 0.00 0.00 5.19
59 60 0.244721 GTTCCCTTTGATGTGCAGCC 59.755 55.000 0.00 0.00 0.00 4.85
60 61 0.961019 TGTTCCCTTTGATGTGCAGC 59.039 50.000 0.00 0.00 0.00 5.25
61 62 2.029649 CCTTGTTCCCTTTGATGTGCAG 60.030 50.000 0.00 0.00 0.00 4.41
62 63 1.962807 CCTTGTTCCCTTTGATGTGCA 59.037 47.619 0.00 0.00 0.00 4.57
63 64 1.337167 GCCTTGTTCCCTTTGATGTGC 60.337 52.381 0.00 0.00 0.00 4.57
64 65 1.273327 GGCCTTGTTCCCTTTGATGTG 59.727 52.381 0.00 0.00 0.00 3.21
65 66 1.632589 GGCCTTGTTCCCTTTGATGT 58.367 50.000 0.00 0.00 0.00 3.06
66 67 0.897621 GGGCCTTGTTCCCTTTGATG 59.102 55.000 0.84 0.00 40.66 3.07
67 68 0.486879 TGGGCCTTGTTCCCTTTGAT 59.513 50.000 4.53 0.00 44.23 2.57
68 69 0.178964 CTGGGCCTTGTTCCCTTTGA 60.179 55.000 4.53 0.00 44.23 2.69
69 70 0.178964 TCTGGGCCTTGTTCCCTTTG 60.179 55.000 4.53 0.00 44.23 2.77
70 71 0.560688 TTCTGGGCCTTGTTCCCTTT 59.439 50.000 4.53 0.00 44.23 3.11
71 72 0.113190 CTTCTGGGCCTTGTTCCCTT 59.887 55.000 4.53 0.00 44.23 3.95
72 73 0.772124 TCTTCTGGGCCTTGTTCCCT 60.772 55.000 4.53 0.00 44.23 4.20
73 74 0.112412 TTCTTCTGGGCCTTGTTCCC 59.888 55.000 4.53 0.00 44.17 3.97
74 75 1.995376 TTTCTTCTGGGCCTTGTTCC 58.005 50.000 4.53 0.00 0.00 3.62
75 76 4.607293 ATTTTTCTTCTGGGCCTTGTTC 57.393 40.909 4.53 0.00 0.00 3.18
76 77 6.493189 TTTATTTTTCTTCTGGGCCTTGTT 57.507 33.333 4.53 0.00 0.00 2.83
77 78 6.326323 TCTTTTATTTTTCTTCTGGGCCTTGT 59.674 34.615 4.53 0.00 0.00 3.16
78 79 6.758254 TCTTTTATTTTTCTTCTGGGCCTTG 58.242 36.000 4.53 0.00 0.00 3.61
79 80 6.994421 TCTTTTATTTTTCTTCTGGGCCTT 57.006 33.333 4.53 0.00 0.00 4.35
80 81 6.994421 TTCTTTTATTTTTCTTCTGGGCCT 57.006 33.333 4.53 0.00 0.00 5.19
81 82 6.650807 CCTTTCTTTTATTTTTCTTCTGGGCC 59.349 38.462 0.00 0.00 0.00 5.80
82 83 6.147821 GCCTTTCTTTTATTTTTCTTCTGGGC 59.852 38.462 0.00 0.00 0.00 5.36
83 84 7.445121 AGCCTTTCTTTTATTTTTCTTCTGGG 58.555 34.615 0.00 0.00 0.00 4.45
84 85 8.363390 AGAGCCTTTCTTTTATTTTTCTTCTGG 58.637 33.333 0.00 0.00 29.61 3.86
85 86 9.404348 GAGAGCCTTTCTTTTATTTTTCTTCTG 57.596 33.333 0.00 0.00 35.87 3.02
86 87 9.360901 AGAGAGCCTTTCTTTTATTTTTCTTCT 57.639 29.630 0.00 0.00 35.87 2.85
87 88 9.619316 GAGAGAGCCTTTCTTTTATTTTTCTTC 57.381 33.333 0.00 0.00 35.87 2.87
88 89 9.136323 TGAGAGAGCCTTTCTTTTATTTTTCTT 57.864 29.630 0.00 0.00 35.87 2.52
89 90 8.697507 TGAGAGAGCCTTTCTTTTATTTTTCT 57.302 30.769 0.00 0.00 35.87 2.52
90 91 9.566530 GATGAGAGAGCCTTTCTTTTATTTTTC 57.433 33.333 0.00 0.00 35.87 2.29
91 92 9.306777 AGATGAGAGAGCCTTTCTTTTATTTTT 57.693 29.630 0.00 0.00 35.87 1.94
92 93 8.876303 AGATGAGAGAGCCTTTCTTTTATTTT 57.124 30.769 0.00 0.00 35.87 1.82
93 94 7.555914 GGAGATGAGAGAGCCTTTCTTTTATTT 59.444 37.037 0.00 0.00 35.87 1.40
94 95 7.053498 GGAGATGAGAGAGCCTTTCTTTTATT 58.947 38.462 0.00 0.00 35.87 1.40
95 96 6.157645 TGGAGATGAGAGAGCCTTTCTTTTAT 59.842 38.462 0.00 0.00 35.87 1.40
96 97 5.485353 TGGAGATGAGAGAGCCTTTCTTTTA 59.515 40.000 0.00 0.00 35.87 1.52
97 98 4.288105 TGGAGATGAGAGAGCCTTTCTTTT 59.712 41.667 0.00 0.00 35.87 2.27
98 99 3.843027 TGGAGATGAGAGAGCCTTTCTTT 59.157 43.478 0.00 0.00 35.87 2.52
99 100 3.197549 GTGGAGATGAGAGAGCCTTTCTT 59.802 47.826 0.00 0.00 35.87 2.52
100 101 2.765699 GTGGAGATGAGAGAGCCTTTCT 59.234 50.000 0.00 0.00 39.43 2.52
101 102 2.158971 GGTGGAGATGAGAGAGCCTTTC 60.159 54.545 0.00 0.00 0.00 2.62
102 103 1.836802 GGTGGAGATGAGAGAGCCTTT 59.163 52.381 0.00 0.00 0.00 3.11
103 104 1.494960 GGTGGAGATGAGAGAGCCTT 58.505 55.000 0.00 0.00 0.00 4.35
104 105 0.754957 CGGTGGAGATGAGAGAGCCT 60.755 60.000 0.00 0.00 0.00 4.58
105 106 1.739049 CGGTGGAGATGAGAGAGCC 59.261 63.158 0.00 0.00 0.00 4.70
106 107 1.739049 CCGGTGGAGATGAGAGAGC 59.261 63.158 0.00 0.00 0.00 4.09
107 108 1.739049 GCCGGTGGAGATGAGAGAG 59.261 63.158 1.90 0.00 0.00 3.20
108 109 1.758514 GGCCGGTGGAGATGAGAGA 60.759 63.158 1.90 0.00 0.00 3.10
109 110 2.801631 GGGCCGGTGGAGATGAGAG 61.802 68.421 1.90 0.00 0.00 3.20
110 111 2.764128 GGGCCGGTGGAGATGAGA 60.764 66.667 1.90 0.00 0.00 3.27
111 112 4.227134 CGGGCCGGTGGAGATGAG 62.227 72.222 20.56 0.00 0.00 2.90
113 114 4.838152 CACGGGCCGGTGGAGATG 62.838 72.222 30.50 13.70 34.27 2.90
124 125 4.389576 CTTTGTCGCTGCACGGGC 62.390 66.667 0.34 0.34 43.89 6.13
125 126 1.781025 TTTCTTTGTCGCTGCACGGG 61.781 55.000 0.00 2.14 43.89 5.28
126 127 0.028770 TTTTCTTTGTCGCTGCACGG 59.971 50.000 0.00 0.00 43.89 4.94
127 128 2.036556 ATTTTCTTTGTCGCTGCACG 57.963 45.000 0.00 2.79 45.62 5.34
128 129 2.911102 GCTATTTTCTTTGTCGCTGCAC 59.089 45.455 0.00 0.00 0.00 4.57
129 130 2.813754 AGCTATTTTCTTTGTCGCTGCA 59.186 40.909 0.00 0.00 0.00 4.41
130 131 3.166657 CAGCTATTTTCTTTGTCGCTGC 58.833 45.455 0.00 0.00 37.24 5.25
131 132 3.189287 ACCAGCTATTTTCTTTGTCGCTG 59.811 43.478 0.00 0.00 42.07 5.18
132 133 3.412386 ACCAGCTATTTTCTTTGTCGCT 58.588 40.909 0.00 0.00 0.00 4.93
133 134 3.831715 ACCAGCTATTTTCTTTGTCGC 57.168 42.857 0.00 0.00 0.00 5.19
134 135 4.151689 TCGAACCAGCTATTTTCTTTGTCG 59.848 41.667 0.00 0.00 0.00 4.35
135 136 5.607119 TCGAACCAGCTATTTTCTTTGTC 57.393 39.130 0.00 0.00 0.00 3.18
136 137 4.083271 GCTCGAACCAGCTATTTTCTTTGT 60.083 41.667 0.00 0.00 36.38 2.83
137 138 4.406943 GCTCGAACCAGCTATTTTCTTTG 58.593 43.478 0.00 0.00 36.38 2.77
138 139 3.440522 GGCTCGAACCAGCTATTTTCTTT 59.559 43.478 0.00 0.00 39.58 2.52
139 140 3.010420 GGCTCGAACCAGCTATTTTCTT 58.990 45.455 0.00 0.00 39.58 2.52
140 141 2.027192 TGGCTCGAACCAGCTATTTTCT 60.027 45.455 2.67 0.00 39.58 2.52
141 142 2.356135 TGGCTCGAACCAGCTATTTTC 58.644 47.619 2.67 0.00 39.58 2.29
142 143 2.488153 GTTGGCTCGAACCAGCTATTTT 59.512 45.455 13.80 0.00 41.82 1.82
143 144 2.084546 GTTGGCTCGAACCAGCTATTT 58.915 47.619 13.80 0.00 41.82 1.40
144 145 1.739067 GTTGGCTCGAACCAGCTATT 58.261 50.000 13.80 0.00 41.82 1.73
145 146 0.460284 CGTTGGCTCGAACCAGCTAT 60.460 55.000 17.97 0.00 41.82 2.97
146 147 1.080093 CGTTGGCTCGAACCAGCTA 60.080 57.895 17.97 0.00 41.82 3.32
147 148 1.812686 TACGTTGGCTCGAACCAGCT 61.813 55.000 17.97 8.88 41.82 4.24
148 149 1.373748 TACGTTGGCTCGAACCAGC 60.374 57.895 11.33 11.33 41.82 4.85
149 150 0.319211 TGTACGTTGGCTCGAACCAG 60.319 55.000 7.74 0.00 41.82 4.00
150 151 0.598158 GTGTACGTTGGCTCGAACCA 60.598 55.000 2.67 2.67 38.16 3.67
151 152 1.611592 CGTGTACGTTGGCTCGAACC 61.612 60.000 0.00 0.00 34.70 3.62
152 153 1.771044 CGTGTACGTTGGCTCGAAC 59.229 57.895 0.00 0.00 34.70 3.95
153 154 4.231753 CGTGTACGTTGGCTCGAA 57.768 55.556 0.00 0.00 34.70 3.71
163 164 1.254313 CAATCCGCATGTACGTGTACG 59.746 52.381 16.28 11.68 46.33 3.67
164 165 2.264813 ACAATCCGCATGTACGTGTAC 58.735 47.619 16.28 3.21 36.63 2.90
165 166 2.094649 TGACAATCCGCATGTACGTGTA 60.095 45.455 16.28 3.50 0.00 2.90
166 167 1.337354 TGACAATCCGCATGTACGTGT 60.337 47.619 16.28 0.00 0.00 4.49
167 168 1.355005 TGACAATCCGCATGTACGTG 58.645 50.000 10.89 10.89 0.00 4.49
168 169 2.201732 GATGACAATCCGCATGTACGT 58.798 47.619 0.00 0.00 0.00 3.57
169 170 1.190103 CGATGACAATCCGCATGTACG 59.810 52.381 0.00 0.00 0.00 3.67
170 171 2.218759 GTCGATGACAATCCGCATGTAC 59.781 50.000 0.00 0.00 32.09 2.90
171 172 2.100749 AGTCGATGACAATCCGCATGTA 59.899 45.455 0.00 0.00 34.60 2.29
172 173 1.134699 AGTCGATGACAATCCGCATGT 60.135 47.619 0.00 0.00 34.60 3.21
173 174 1.259770 CAGTCGATGACAATCCGCATG 59.740 52.381 0.00 0.00 34.60 4.06
174 175 1.136891 TCAGTCGATGACAATCCGCAT 59.863 47.619 0.00 0.00 34.60 4.73
175 176 0.530288 TCAGTCGATGACAATCCGCA 59.470 50.000 0.00 0.00 34.60 5.69
176 177 1.202302 TCTCAGTCGATGACAATCCGC 60.202 52.381 0.00 0.00 34.60 5.54
177 178 2.098280 AGTCTCAGTCGATGACAATCCG 59.902 50.000 11.38 0.00 34.60 4.18
178 179 3.791973 AGTCTCAGTCGATGACAATCC 57.208 47.619 11.38 0.00 34.60 3.01
179 180 3.788694 CGAAGTCTCAGTCGATGACAATC 59.211 47.826 11.38 8.74 39.64 2.67
180 181 3.763902 CGAAGTCTCAGTCGATGACAAT 58.236 45.455 11.38 2.92 39.64 2.71
181 182 2.668556 GCGAAGTCTCAGTCGATGACAA 60.669 50.000 11.38 0.00 39.64 3.18
182 183 1.135660 GCGAAGTCTCAGTCGATGACA 60.136 52.381 11.38 0.00 39.64 3.58
183 184 1.540407 GCGAAGTCTCAGTCGATGAC 58.460 55.000 0.00 0.00 39.64 3.06
184 185 0.452184 GGCGAAGTCTCAGTCGATGA 59.548 55.000 0.00 0.00 39.64 2.92
185 186 0.171231 TGGCGAAGTCTCAGTCGATG 59.829 55.000 0.00 0.00 39.64 3.84
186 187 0.888619 TTGGCGAAGTCTCAGTCGAT 59.111 50.000 0.00 0.00 39.64 3.59
187 188 0.671796 TTTGGCGAAGTCTCAGTCGA 59.328 50.000 0.00 0.00 39.64 4.20
188 189 1.497991 TTTTGGCGAAGTCTCAGTCG 58.502 50.000 0.00 0.00 40.24 4.18
189 190 4.489679 AATTTTTGGCGAAGTCTCAGTC 57.510 40.909 0.00 0.00 0.00 3.51
190 191 5.063880 ACTAATTTTTGGCGAAGTCTCAGT 58.936 37.500 0.00 0.00 0.00 3.41
191 192 5.613358 ACTAATTTTTGGCGAAGTCTCAG 57.387 39.130 0.00 0.00 0.00 3.35
192 193 4.151689 CGACTAATTTTTGGCGAAGTCTCA 59.848 41.667 0.00 0.00 32.96 3.27
193 194 4.387862 TCGACTAATTTTTGGCGAAGTCTC 59.612 41.667 0.21 0.00 32.96 3.36
194 195 4.151867 GTCGACTAATTTTTGGCGAAGTCT 59.848 41.667 8.70 0.00 32.96 3.24
195 196 4.151867 AGTCGACTAATTTTTGGCGAAGTC 59.848 41.667 18.46 0.00 0.00 3.01
196 197 4.062991 AGTCGACTAATTTTTGGCGAAGT 58.937 39.130 18.46 0.00 0.00 3.01
197 198 4.151689 TCAGTCGACTAATTTTTGGCGAAG 59.848 41.667 19.57 0.26 0.00 3.79
198 199 4.059511 TCAGTCGACTAATTTTTGGCGAA 58.940 39.130 19.57 0.00 0.00 4.70
199 200 3.655486 TCAGTCGACTAATTTTTGGCGA 58.345 40.909 19.57 4.20 0.00 5.54
200 201 4.600012 ATCAGTCGACTAATTTTTGGCG 57.400 40.909 19.57 1.52 0.00 5.69
201 202 9.651718 CTAAATATCAGTCGACTAATTTTTGGC 57.348 33.333 25.30 0.00 0.00 4.52
207 208 9.680315 GCTACACTAAATATCAGTCGACTAATT 57.320 33.333 19.57 14.86 0.00 1.40
208 209 8.298140 GGCTACACTAAATATCAGTCGACTAAT 58.702 37.037 19.57 12.76 0.00 1.73
209 210 7.519488 CGGCTACACTAAATATCAGTCGACTAA 60.519 40.741 19.57 3.55 33.19 2.24
210 211 6.073385 CGGCTACACTAAATATCAGTCGACTA 60.073 42.308 19.57 2.81 33.19 2.59
211 212 5.277876 CGGCTACACTAAATATCAGTCGACT 60.278 44.000 13.58 13.58 33.19 4.18
212 213 4.910456 CGGCTACACTAAATATCAGTCGAC 59.090 45.833 7.70 7.70 33.19 4.20
213 214 4.577693 ACGGCTACACTAAATATCAGTCGA 59.422 41.667 0.00 0.00 34.91 4.20
214 215 4.856664 ACGGCTACACTAAATATCAGTCG 58.143 43.478 0.00 0.00 37.17 4.18
215 216 8.700644 CATAAACGGCTACACTAAATATCAGTC 58.299 37.037 0.00 0.00 0.00 3.51
216 217 8.202137 ACATAAACGGCTACACTAAATATCAGT 58.798 33.333 0.00 0.00 0.00 3.41
217 218 8.589335 ACATAAACGGCTACACTAAATATCAG 57.411 34.615 0.00 0.00 0.00 2.90
221 222 9.874205 ACTTTACATAAACGGCTACACTAAATA 57.126 29.630 0.00 0.00 0.00 1.40
222 223 8.782339 ACTTTACATAAACGGCTACACTAAAT 57.218 30.769 0.00 0.00 0.00 1.40
223 224 9.357652 CTACTTTACATAAACGGCTACACTAAA 57.642 33.333 0.00 0.00 0.00 1.85
224 225 7.975616 CCTACTTTACATAAACGGCTACACTAA 59.024 37.037 0.00 0.00 0.00 2.24
225 226 7.416664 CCCTACTTTACATAAACGGCTACACTA 60.417 40.741 0.00 0.00 0.00 2.74
226 227 6.335777 CCTACTTTACATAAACGGCTACACT 58.664 40.000 0.00 0.00 0.00 3.55
227 228 5.521372 CCCTACTTTACATAAACGGCTACAC 59.479 44.000 0.00 0.00 0.00 2.90
228 229 5.421693 TCCCTACTTTACATAAACGGCTACA 59.578 40.000 0.00 0.00 0.00 2.74
229 230 5.906073 TCCCTACTTTACATAAACGGCTAC 58.094 41.667 0.00 0.00 0.00 3.58
230 231 5.452356 GCTCCCTACTTTACATAAACGGCTA 60.452 44.000 0.00 0.00 0.00 3.93
231 232 4.682589 GCTCCCTACTTTACATAAACGGCT 60.683 45.833 0.00 0.00 0.00 5.52
232 233 3.558829 GCTCCCTACTTTACATAAACGGC 59.441 47.826 0.00 0.00 0.00 5.68
233 234 4.761975 TGCTCCCTACTTTACATAAACGG 58.238 43.478 0.00 0.00 0.00 4.44
234 235 6.292168 CGAATGCTCCCTACTTTACATAAACG 60.292 42.308 0.00 0.00 0.00 3.60
235 236 6.759827 TCGAATGCTCCCTACTTTACATAAAC 59.240 38.462 0.00 0.00 0.00 2.01
236 237 6.880484 TCGAATGCTCCCTACTTTACATAAA 58.120 36.000 0.00 0.00 0.00 1.40
237 238 6.474140 TCGAATGCTCCCTACTTTACATAA 57.526 37.500 0.00 0.00 0.00 1.90
238 239 6.462487 CCTTCGAATGCTCCCTACTTTACATA 60.462 42.308 0.00 0.00 0.00 2.29
239 240 5.353394 TTCGAATGCTCCCTACTTTACAT 57.647 39.130 0.00 0.00 0.00 2.29
240 241 4.382685 CCTTCGAATGCTCCCTACTTTACA 60.383 45.833 0.00 0.00 0.00 2.41
241 242 4.120589 CCTTCGAATGCTCCCTACTTTAC 58.879 47.826 0.00 0.00 0.00 2.01
242 243 3.134081 CCCTTCGAATGCTCCCTACTTTA 59.866 47.826 0.00 0.00 0.00 1.85
243 244 2.092914 CCCTTCGAATGCTCCCTACTTT 60.093 50.000 0.00 0.00 0.00 2.66
244 245 1.486726 CCCTTCGAATGCTCCCTACTT 59.513 52.381 0.00 0.00 0.00 2.24
245 246 1.123928 CCCTTCGAATGCTCCCTACT 58.876 55.000 0.00 0.00 0.00 2.57
246 247 1.069358 CTCCCTTCGAATGCTCCCTAC 59.931 57.143 0.00 0.00 0.00 3.18
247 248 1.414158 CTCCCTTCGAATGCTCCCTA 58.586 55.000 0.00 0.00 0.00 3.53
248 249 1.341156 CCTCCCTTCGAATGCTCCCT 61.341 60.000 0.00 0.00 0.00 4.20
249 250 1.147153 CCTCCCTTCGAATGCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
250 251 1.147153 CCCTCCCTTCGAATGCTCC 59.853 63.158 0.00 0.00 0.00 4.70
251 252 0.105778 CTCCCTCCCTTCGAATGCTC 59.894 60.000 0.00 0.00 0.00 4.26
252 253 0.325671 TCTCCCTCCCTTCGAATGCT 60.326 55.000 0.00 0.00 0.00 3.79
253 254 0.179070 GTCTCCCTCCCTTCGAATGC 60.179 60.000 0.00 0.00 0.00 3.56
254 255 1.195115 TGTCTCCCTCCCTTCGAATG 58.805 55.000 0.00 0.00 0.00 2.67
255 256 1.834263 CTTGTCTCCCTCCCTTCGAAT 59.166 52.381 0.00 0.00 0.00 3.34
256 257 1.203137 TCTTGTCTCCCTCCCTTCGAA 60.203 52.381 0.00 0.00 0.00 3.71
257 258 0.408309 TCTTGTCTCCCTCCCTTCGA 59.592 55.000 0.00 0.00 0.00 3.71
258 259 1.490574 ATCTTGTCTCCCTCCCTTCG 58.509 55.000 0.00 0.00 0.00 3.79
259 260 3.648739 AGTATCTTGTCTCCCTCCCTTC 58.351 50.000 0.00 0.00 0.00 3.46
260 261 3.786213 AGTATCTTGTCTCCCTCCCTT 57.214 47.619 0.00 0.00 0.00 3.95
261 262 3.786213 AAGTATCTTGTCTCCCTCCCT 57.214 47.619 0.00 0.00 0.00 4.20
262 263 4.471747 AGAAAAGTATCTTGTCTCCCTCCC 59.528 45.833 0.00 0.00 0.00 4.30
263 264 5.685520 AGAAAAGTATCTTGTCTCCCTCC 57.314 43.478 0.00 0.00 0.00 4.30
264 265 7.987750 AAAAGAAAAGTATCTTGTCTCCCTC 57.012 36.000 3.13 0.00 39.54 4.30
286 287 9.967451 TCCCTTGTCATCATTACACTATAAAAA 57.033 29.630 0.00 0.00 0.00 1.94
288 289 9.559732 CATCCCTTGTCATCATTACACTATAAA 57.440 33.333 0.00 0.00 0.00 1.40
289 290 7.661437 GCATCCCTTGTCATCATTACACTATAA 59.339 37.037 0.00 0.00 0.00 0.98
290 291 7.016563 AGCATCCCTTGTCATCATTACACTATA 59.983 37.037 0.00 0.00 0.00 1.31
291 292 6.000219 GCATCCCTTGTCATCATTACACTAT 59.000 40.000 0.00 0.00 0.00 2.12
292 293 5.130975 AGCATCCCTTGTCATCATTACACTA 59.869 40.000 0.00 0.00 0.00 2.74
293 294 4.080129 AGCATCCCTTGTCATCATTACACT 60.080 41.667 0.00 0.00 0.00 3.55
294 295 4.202441 AGCATCCCTTGTCATCATTACAC 58.798 43.478 0.00 0.00 0.00 2.90
295 296 4.508551 AGCATCCCTTGTCATCATTACA 57.491 40.909 0.00 0.00 0.00 2.41
296 297 7.516198 AATTAGCATCCCTTGTCATCATTAC 57.484 36.000 0.00 0.00 0.00 1.89
297 298 7.665559 GGTAATTAGCATCCCTTGTCATCATTA 59.334 37.037 9.77 0.00 0.00 1.90
298 299 6.491403 GGTAATTAGCATCCCTTGTCATCATT 59.509 38.462 9.77 0.00 0.00 2.57
299 300 6.006449 GGTAATTAGCATCCCTTGTCATCAT 58.994 40.000 9.77 0.00 0.00 2.45
300 301 5.132648 AGGTAATTAGCATCCCTTGTCATCA 59.867 40.000 16.53 0.00 0.00 3.07
301 302 5.625150 AGGTAATTAGCATCCCTTGTCATC 58.375 41.667 16.53 0.00 0.00 2.92
302 303 5.653255 AGGTAATTAGCATCCCTTGTCAT 57.347 39.130 16.53 0.00 0.00 3.06
303 304 5.450818 AAGGTAATTAGCATCCCTTGTCA 57.549 39.130 16.53 0.00 34.32 3.58
304 305 6.775594 AAAAGGTAATTAGCATCCCTTGTC 57.224 37.500 16.53 0.00 35.74 3.18
305 306 8.058847 TCATAAAAGGTAATTAGCATCCCTTGT 58.941 33.333 16.53 8.25 35.74 3.16
306 307 8.463930 TCATAAAAGGTAATTAGCATCCCTTG 57.536 34.615 16.53 7.16 35.74 3.61
308 309 9.965902 CTATCATAAAAGGTAATTAGCATCCCT 57.034 33.333 16.53 1.78 0.00 4.20
309 310 9.178758 CCTATCATAAAAGGTAATTAGCATCCC 57.821 37.037 16.53 0.00 0.00 3.85
310 311 8.678199 GCCTATCATAAAAGGTAATTAGCATCC 58.322 37.037 16.53 0.00 35.16 3.51
311 312 8.678199 GGCCTATCATAAAAGGTAATTAGCATC 58.322 37.037 16.53 0.00 35.16 3.91
312 313 8.394040 AGGCCTATCATAAAAGGTAATTAGCAT 58.606 33.333 16.53 1.83 35.16 3.79
313 314 7.665559 CAGGCCTATCATAAAAGGTAATTAGCA 59.334 37.037 16.53 0.00 35.16 3.49
314 315 7.362142 GCAGGCCTATCATAAAAGGTAATTAGC 60.362 40.741 3.98 6.56 35.16 3.09
315 316 7.885399 AGCAGGCCTATCATAAAAGGTAATTAG 59.115 37.037 3.98 0.00 35.16 1.73
316 317 7.755618 AGCAGGCCTATCATAAAAGGTAATTA 58.244 34.615 3.98 0.00 35.16 1.40
317 318 6.614657 AGCAGGCCTATCATAAAAGGTAATT 58.385 36.000 3.98 0.00 35.16 1.40
318 319 6.206180 AGCAGGCCTATCATAAAAGGTAAT 57.794 37.500 3.98 0.00 35.16 1.89
319 320 5.621193 GAGCAGGCCTATCATAAAAGGTAA 58.379 41.667 3.98 0.00 35.16 2.85
320 321 4.262463 CGAGCAGGCCTATCATAAAAGGTA 60.262 45.833 3.98 0.00 35.16 3.08
321 322 3.495100 CGAGCAGGCCTATCATAAAAGGT 60.495 47.826 3.98 0.00 35.16 3.50
322 323 3.070018 CGAGCAGGCCTATCATAAAAGG 58.930 50.000 3.98 0.00 35.86 3.11
323 324 3.070018 CCGAGCAGGCCTATCATAAAAG 58.930 50.000 3.98 0.00 0.00 2.27
324 325 2.703536 TCCGAGCAGGCCTATCATAAAA 59.296 45.455 3.98 0.00 40.77 1.52
325 326 2.037251 GTCCGAGCAGGCCTATCATAAA 59.963 50.000 3.98 0.00 40.77 1.40
326 327 1.618837 GTCCGAGCAGGCCTATCATAA 59.381 52.381 3.98 0.00 40.77 1.90
327 328 1.257743 GTCCGAGCAGGCCTATCATA 58.742 55.000 3.98 0.00 40.77 2.15
328 329 1.810606 CGTCCGAGCAGGCCTATCAT 61.811 60.000 3.98 0.00 40.77 2.45
329 330 2.490148 CGTCCGAGCAGGCCTATCA 61.490 63.158 3.98 0.00 40.77 2.15
330 331 2.336809 CGTCCGAGCAGGCCTATC 59.663 66.667 3.98 5.93 40.77 2.08
331 332 3.917760 GCGTCCGAGCAGGCCTAT 61.918 66.667 3.98 0.00 40.77 2.57
348 349 1.573829 AACTTACATGGCACGCGGTG 61.574 55.000 12.47 7.75 36.51 4.94
349 350 0.887387 AAACTTACATGGCACGCGGT 60.887 50.000 12.47 0.00 0.00 5.68
350 351 0.239879 AAAACTTACATGGCACGCGG 59.760 50.000 12.47 0.00 0.00 6.46
351 352 2.044888 AAAAACTTACATGGCACGCG 57.955 45.000 3.53 3.53 0.00 6.01
367 368 2.033577 CGCACGCTATATACGGCAAAAA 60.034 45.455 8.77 0.00 34.00 1.94
368 369 1.523515 CGCACGCTATATACGGCAAAA 59.476 47.619 8.77 0.00 34.00 2.44
369 370 1.133407 CGCACGCTATATACGGCAAA 58.867 50.000 8.77 0.00 34.00 3.68
370 371 1.279527 GCGCACGCTATATACGGCAA 61.280 55.000 7.96 0.00 38.26 4.52
371 372 1.731613 GCGCACGCTATATACGGCA 60.732 57.895 7.96 0.00 38.26 5.69
372 373 3.070060 GCGCACGCTATATACGGC 58.930 61.111 7.96 8.04 38.26 5.68
384 385 2.680913 AATGGACTCGCAAGCGCAC 61.681 57.895 11.47 0.00 38.40 5.34
385 386 2.358615 AATGGACTCGCAAGCGCA 60.359 55.556 11.47 2.15 38.40 6.09
386 387 1.911293 TTCAATGGACTCGCAAGCGC 61.911 55.000 9.97 0.00 39.59 5.92
387 388 0.516877 TTTCAATGGACTCGCAAGCG 59.483 50.000 8.36 8.36 41.35 4.68
388 389 1.730446 GCTTTCAATGGACTCGCAAGC 60.730 52.381 0.00 0.00 37.18 4.01
389 390 1.536766 TGCTTTCAATGGACTCGCAAG 59.463 47.619 0.00 0.00 0.00 4.01
390 391 1.536766 CTGCTTTCAATGGACTCGCAA 59.463 47.619 0.00 0.00 0.00 4.85
391 392 1.159285 CTGCTTTCAATGGACTCGCA 58.841 50.000 0.00 0.00 0.00 5.10
392 393 0.179179 GCTGCTTTCAATGGACTCGC 60.179 55.000 0.00 0.00 0.00 5.03
393 394 1.396301 GAGCTGCTTTCAATGGACTCG 59.604 52.381 2.53 0.00 0.00 4.18
394 395 1.742268 GGAGCTGCTTTCAATGGACTC 59.258 52.381 2.53 0.00 0.00 3.36
395 396 1.074405 TGGAGCTGCTTTCAATGGACT 59.926 47.619 6.82 0.00 0.00 3.85
396 397 1.200948 GTGGAGCTGCTTTCAATGGAC 59.799 52.381 6.82 0.00 0.00 4.02
397 398 1.538047 GTGGAGCTGCTTTCAATGGA 58.462 50.000 6.82 0.00 0.00 3.41
398 399 0.169672 CGTGGAGCTGCTTTCAATGG 59.830 55.000 6.82 0.00 0.00 3.16
399 400 1.159285 TCGTGGAGCTGCTTTCAATG 58.841 50.000 6.82 2.86 0.00 2.82
400 401 2.119801 ATCGTGGAGCTGCTTTCAAT 57.880 45.000 6.82 0.00 0.00 2.57
401 402 1.806542 GAATCGTGGAGCTGCTTTCAA 59.193 47.619 6.82 0.00 0.00 2.69
402 403 1.270785 TGAATCGTGGAGCTGCTTTCA 60.271 47.619 6.82 5.84 0.00 2.69
403 404 1.396301 CTGAATCGTGGAGCTGCTTTC 59.604 52.381 6.82 2.96 0.00 2.62
404 405 1.271054 ACTGAATCGTGGAGCTGCTTT 60.271 47.619 6.82 0.00 0.00 3.51
405 406 0.322975 ACTGAATCGTGGAGCTGCTT 59.677 50.000 6.82 0.00 0.00 3.91
406 407 1.186200 TACTGAATCGTGGAGCTGCT 58.814 50.000 6.82 0.00 0.00 4.24
407 408 2.131183 GATACTGAATCGTGGAGCTGC 58.869 52.381 0.00 0.00 0.00 5.25
408 409 3.379240 CAGATACTGAATCGTGGAGCTG 58.621 50.000 0.00 0.00 39.79 4.24
409 410 2.363680 CCAGATACTGAATCGTGGAGCT 59.636 50.000 0.00 0.00 39.79 4.09
410 411 2.546795 CCCAGATACTGAATCGTGGAGC 60.547 54.545 0.00 0.00 39.79 4.70
411 412 2.959030 TCCCAGATACTGAATCGTGGAG 59.041 50.000 0.00 0.00 39.79 3.86
412 413 3.026707 TCCCAGATACTGAATCGTGGA 57.973 47.619 0.00 0.00 39.79 4.02
413 414 3.819564 TTCCCAGATACTGAATCGTGG 57.180 47.619 0.00 0.00 39.79 4.94
474 475 4.026145 CGCGAACCAGACTAGTAGTACTAC 60.026 50.000 23.03 23.03 36.35 2.73
475 476 4.115516 CGCGAACCAGACTAGTAGTACTA 58.884 47.826 0.00 9.66 0.00 1.82
476 477 2.935201 CGCGAACCAGACTAGTAGTACT 59.065 50.000 0.00 8.14 0.00 2.73
477 478 2.932614 TCGCGAACCAGACTAGTAGTAC 59.067 50.000 6.20 0.00 0.00 2.73
478 479 3.251479 TCGCGAACCAGACTAGTAGTA 57.749 47.619 6.20 0.00 0.00 1.82
479 480 2.105006 TCGCGAACCAGACTAGTAGT 57.895 50.000 6.20 1.37 0.00 2.73
480 481 2.855187 GCATCGCGAACCAGACTAGTAG 60.855 54.545 15.24 0.00 0.00 2.57
535 536 2.044946 GTCATGTCCCACCCAGGC 60.045 66.667 0.00 0.00 35.39 4.85
548 549 2.203015 GTATGTGCGCCGGGTCAT 60.203 61.111 4.18 4.73 0.00 3.06
995 1032 0.592637 TTGCGAACTTGTGATGCTGG 59.407 50.000 0.00 0.00 0.00 4.85
1112 1193 2.753043 GAGGTCCGCCGAGGTGTA 60.753 66.667 1.75 0.00 41.99 2.90
1116 1197 4.227134 CATGGAGGTCCGCCGAGG 62.227 72.222 7.20 0.00 40.50 4.63
1247 1337 0.321564 TCTTGCACATGAACTCCCCG 60.322 55.000 0.00 0.00 0.00 5.73
1362 1452 2.467826 GCTTGGCGGAGTGCTGATC 61.468 63.158 0.00 0.00 45.43 2.92
1363 1453 2.437359 GCTTGGCGGAGTGCTGAT 60.437 61.111 0.00 0.00 45.43 2.90
1364 1454 4.704833 GGCTTGGCGGAGTGCTGA 62.705 66.667 0.00 0.00 45.43 4.26
1369 1459 2.142292 ATTCTTGGGCTTGGCGGAGT 62.142 55.000 0.00 0.00 0.00 3.85
1370 1460 0.107214 TATTCTTGGGCTTGGCGGAG 60.107 55.000 0.00 0.00 0.00 4.63
1371 1461 0.393808 GTATTCTTGGGCTTGGCGGA 60.394 55.000 0.00 0.00 0.00 5.54
1372 1462 0.394352 AGTATTCTTGGGCTTGGCGG 60.394 55.000 0.00 0.00 0.00 6.13
1373 1463 1.940613 GTAGTATTCTTGGGCTTGGCG 59.059 52.381 0.00 0.00 0.00 5.69
1374 1464 2.945668 CTGTAGTATTCTTGGGCTTGGC 59.054 50.000 0.00 0.00 0.00 4.52
1375 1465 4.446371 CTCTGTAGTATTCTTGGGCTTGG 58.554 47.826 0.00 0.00 0.00 3.61
1376 1466 3.873952 GCTCTGTAGTATTCTTGGGCTTG 59.126 47.826 0.00 0.00 0.00 4.01
1377 1467 3.519510 TGCTCTGTAGTATTCTTGGGCTT 59.480 43.478 0.00 0.00 0.00 4.35
1384 1474 4.099266 CCTGCTTCTGCTCTGTAGTATTCT 59.901 45.833 0.00 0.00 40.48 2.40
1388 1478 1.478510 GCCTGCTTCTGCTCTGTAGTA 59.521 52.381 0.00 0.00 40.48 1.82
1389 1479 0.248843 GCCTGCTTCTGCTCTGTAGT 59.751 55.000 0.00 0.00 40.48 2.73
1391 1481 1.216444 CGCCTGCTTCTGCTCTGTA 59.784 57.895 0.00 0.00 40.48 2.74
1394 1484 4.012811 TGCGCCTGCTTCTGCTCT 62.013 61.111 4.18 0.00 43.34 4.09
1594 1691 2.357517 GCGCACACTACACAGCCT 60.358 61.111 0.30 0.00 0.00 4.58
1631 1733 2.427453 CAGTACCTAGCTACCAGTGTGG 59.573 54.545 0.00 0.00 45.02 4.17
1638 1748 2.553172 CCACGATCAGTACCTAGCTACC 59.447 54.545 0.00 0.00 0.00 3.18
1738 1853 2.605366 GAGACGAGCAAATCAGCTAACC 59.395 50.000 0.00 0.00 46.75 2.85
1743 1858 3.486584 CAAAAGAGACGAGCAAATCAGC 58.513 45.455 0.00 0.00 0.00 4.26
1765 1880 1.043673 ACCGGGCTAGCTAGTTGGAG 61.044 60.000 25.27 13.73 0.00 3.86
1887 2053 2.666272 TTACAACAGTGGCATCCCAA 57.334 45.000 0.00 0.00 44.33 4.12
1947 2113 6.072064 ACAGGAATCTCAAGATTTGCTTTCTG 60.072 38.462 6.70 2.65 44.14 3.02
1997 2171 9.783081 ATACAAATGAGACATGTATTAGCATGA 57.217 29.630 12.27 0.00 46.65 3.07
2094 2268 3.380004 TGGCTGGTGTTCTTTGTGTAAAG 59.620 43.478 0.00 0.00 43.72 1.85
2102 2276 3.631250 TCTTTCTTGGCTGGTGTTCTTT 58.369 40.909 0.00 0.00 0.00 2.52
2155 2329 1.214175 TGATGGGTGTTGGTGTCAAGT 59.786 47.619 0.00 0.00 32.92 3.16
2214 2388 4.042062 AGGAGGTGATCTGTCATGTTTTCA 59.958 41.667 0.00 0.00 36.60 2.69
2226 2400 2.835431 CGGGCGAGGAGGTGATCT 60.835 66.667 0.00 0.00 0.00 2.75
2300 2474 1.002624 GTTGCCCCGGTCTGATTCA 60.003 57.895 0.00 0.00 0.00 2.57
2320 2494 3.690685 TTAATCGTGCGGGGCTGGG 62.691 63.158 0.00 0.00 0.00 4.45
2323 2497 1.153429 GTCTTAATCGTGCGGGGCT 60.153 57.895 0.00 0.00 0.00 5.19
2324 2498 0.814010 ATGTCTTAATCGTGCGGGGC 60.814 55.000 0.00 0.00 0.00 5.80
2344 2547 1.201429 AGGTGCGGTTTCCTCCTCAT 61.201 55.000 0.00 0.00 0.00 2.90
2350 2553 1.141053 GGATGATAGGTGCGGTTTCCT 59.859 52.381 0.00 0.00 37.80 3.36
2352 2555 1.940613 GTGGATGATAGGTGCGGTTTC 59.059 52.381 0.00 0.00 0.00 2.78
2364 2567 4.665451 TGAGTTCATGGTTTGTGGATGAT 58.335 39.130 0.00 0.00 0.00 2.45
2453 2656 2.973899 GACGCAGAGCTTGGGAGA 59.026 61.111 16.04 0.00 42.02 3.71
2569 2775 1.288508 TGGTTGGGGATGGATCTGGG 61.289 60.000 0.00 0.00 0.00 4.45
2605 2811 7.920160 AAGATTCTTCAAATCCTTCTCTGAC 57.080 36.000 0.00 0.00 0.00 3.51
2666 2872 7.514721 AGTCTAGGTTTTTAGGTTGTTCATCA 58.485 34.615 0.00 0.00 0.00 3.07
2810 3016 2.940994 AGCGATCTCTCTAGTGGCTA 57.059 50.000 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.