Multiple sequence alignment - TraesCS5D01G491600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G491600 chr5D 100.000 2522 0 0 1 2522 525377594 525380115 0.000000e+00 4658.0
1 TraesCS5D01G491600 chr5D 92.988 1797 77 27 409 2191 23862999 23864760 0.000000e+00 2575.0
2 TraesCS5D01G491600 chr5D 86.548 840 76 17 701 1522 525325407 525326227 0.000000e+00 891.0
3 TraesCS5D01G491600 chr5D 89.482 656 66 1 924 1579 525321785 525322437 0.000000e+00 826.0
4 TraesCS5D01G491600 chr5D 79.773 880 126 26 694 1564 525305671 525306507 2.160000e-165 592.0
5 TraesCS5D01G491600 chr5D 98.160 326 4 1 2199 2522 23867145 23867470 3.640000e-158 568.0
6 TraesCS5D01G491600 chr5D 83.837 563 65 12 998 1556 525253722 525254262 1.730000e-141 512.0
7 TraesCS5D01G491600 chr5D 85.490 510 41 12 409 902 525321241 525321733 3.750000e-138 501.0
8 TraesCS5D01G491600 chr5D 83.469 490 54 17 1672 2156 525322715 525323182 4.980000e-117 431.0
9 TraesCS5D01G491600 chr5D 81.776 214 20 6 442 654 525325211 525325406 7.220000e-36 161.0
10 TraesCS5D01G491600 chr5B 89.327 1115 95 12 435 1538 659743050 659744151 0.000000e+00 1378.0
11 TraesCS5D01G491600 chr5B 87.437 1186 113 18 409 1579 659738949 659740113 0.000000e+00 1332.0
12 TraesCS5D01G491600 chr5B 88.073 654 61 11 1875 2522 659744413 659745055 0.000000e+00 760.0
13 TraesCS5D01G491600 chr5B 80.023 886 109 35 695 1564 659625440 659626273 6.010000e-166 593.0
14 TraesCS5D01G491600 chr5B 94.306 281 13 2 131 409 472459053 472458774 6.450000e-116 427.0
15 TraesCS5D01G491600 chr5B 92.177 294 19 3 119 408 636603115 636602822 1.810000e-111 412.0
16 TraesCS5D01G491600 chr5B 92.105 114 9 0 563 676 659704076 659704189 7.220000e-36 161.0
17 TraesCS5D01G491600 chr5B 88.525 122 11 3 558 676 659638319 659638440 7.270000e-31 145.0
18 TraesCS5D01G491600 chr5A 80.933 1007 117 40 563 1550 651733883 651734833 0.000000e+00 726.0
19 TraesCS5D01G491600 chr5A 87.567 563 52 6 980 1539 651748982 651749529 9.840000e-179 636.0
20 TraesCS5D01G491600 chr5A 84.094 679 76 13 929 1594 651788265 651788924 5.920000e-176 627.0
21 TraesCS5D01G491600 chr5A 86.998 423 34 11 481 895 651785673 651786082 8.220000e-125 457.0
22 TraesCS5D01G491600 chr5A 87.018 285 29 7 2026 2303 651789265 651789548 5.240000e-82 315.0
23 TraesCS5D01G491600 chr5A 95.238 105 5 0 563 667 651758605 651758709 1.550000e-37 167.0
24 TraesCS5D01G491600 chr5A 88.312 77 6 1 2449 2522 651789576 651789652 3.460000e-14 89.8
25 TraesCS5D01G491600 chrUn 81.919 719 87 19 853 1550 67240590 67241286 3.640000e-158 568.0
26 TraesCS5D01G491600 chr2D 97.122 278 8 0 132 409 155034437 155034714 1.060000e-128 470.0
27 TraesCS5D01G491600 chr2D 97.122 278 8 0 132 409 381023952 381024229 1.060000e-128 470.0
28 TraesCS5D01G491600 chr2D 94.949 99 3 2 1 97 313975626 313975528 1.210000e-33 154.0
29 TraesCS5D01G491600 chr1D 97.133 279 7 1 132 409 262273315 262273037 1.060000e-128 470.0
30 TraesCS5D01G491600 chr1D 96.403 278 10 0 132 409 54055947 54056224 2.290000e-125 459.0
31 TraesCS5D01G491600 chr1D 91.892 111 6 3 1 108 220062328 220062218 4.350000e-33 152.0
32 TraesCS5D01G491600 chr3D 96.029 277 11 0 132 408 45177317 45177041 3.830000e-123 451.0
33 TraesCS5D01G491600 chr3D 94.949 99 3 2 1 97 353806468 353806370 1.210000e-33 154.0
34 TraesCS5D01G491600 chr3D 93.333 105 4 3 1 102 206042130 206042026 4.350000e-33 152.0
35 TraesCS5D01G491600 chr3D 90.265 113 8 3 1 112 124216747 124216637 7.270000e-31 145.0
36 TraesCS5D01G491600 chr7D 94.604 278 14 1 131 408 608726279 608726003 1.790000e-116 429.0
37 TraesCS5D01G491600 chr7D 95.000 100 2 3 1 97 223466570 223466669 1.210000e-33 154.0
38 TraesCS5D01G491600 chr4B 93.993 283 16 1 127 409 563878536 563878817 6.450000e-116 427.0
39 TraesCS5D01G491600 chr4D 94.949 99 3 2 1 97 280550255 280550157 1.210000e-33 154.0
40 TraesCS5D01G491600 chr4D 92.453 106 5 3 1 104 388026196 388026300 5.620000e-32 148.0
41 TraesCS5D01G491600 chr4D 91.589 107 7 2 1 105 323470369 323470475 2.020000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G491600 chr5D 525377594 525380115 2521 False 4658.000000 4658 100.0000 1 2522 1 chr5D.!!$F3 2521
1 TraesCS5D01G491600 chr5D 23862999 23867470 4471 False 1571.500000 2575 95.5740 409 2522 2 chr5D.!!$F4 2113
2 TraesCS5D01G491600 chr5D 525305671 525306507 836 False 592.000000 592 79.7730 694 1564 1 chr5D.!!$F2 870
3 TraesCS5D01G491600 chr5D 525321241 525326227 4986 False 562.000000 891 85.3530 409 2156 5 chr5D.!!$F5 1747
4 TraesCS5D01G491600 chr5D 525253722 525254262 540 False 512.000000 512 83.8370 998 1556 1 chr5D.!!$F1 558
5 TraesCS5D01G491600 chr5B 659738949 659745055 6106 False 1156.666667 1378 88.2790 409 2522 3 chr5B.!!$F4 2113
6 TraesCS5D01G491600 chr5B 659625440 659626273 833 False 593.000000 593 80.0230 695 1564 1 chr5B.!!$F1 869
7 TraesCS5D01G491600 chr5A 651733883 651734833 950 False 726.000000 726 80.9330 563 1550 1 chr5A.!!$F1 987
8 TraesCS5D01G491600 chr5A 651748982 651749529 547 False 636.000000 636 87.5670 980 1539 1 chr5A.!!$F2 559
9 TraesCS5D01G491600 chr5A 651785673 651789652 3979 False 372.200000 627 86.6055 481 2522 4 chr5A.!!$F4 2041
10 TraesCS5D01G491600 chrUn 67240590 67241286 696 False 568.000000 568 81.9190 853 1550 1 chrUn.!!$F1 697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.03213 CATCCGACAGTACCCGATGG 59.968 60.0 2.08 0.0 37.8 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 12128 8.900983 AGCTTTTATGGCAGAATTTTACAAAA 57.099 26.923 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.723322 TTAGCGAGCTAGGGTGTAGA 57.277 50.000 4.91 0.00 0.00 2.59
20 21 2.953284 TAGCGAGCTAGGGTGTAGAT 57.047 50.000 0.00 0.00 0.00 1.98
21 22 1.611519 AGCGAGCTAGGGTGTAGATC 58.388 55.000 0.00 0.00 0.00 2.75
23 24 0.875728 CGAGCTAGGGTGTAGATCGG 59.124 60.000 10.97 0.00 46.01 4.18
24 25 1.814634 CGAGCTAGGGTGTAGATCGGT 60.815 57.143 10.97 0.00 46.01 4.69
25 26 2.549563 CGAGCTAGGGTGTAGATCGGTA 60.550 54.545 10.97 0.00 46.01 4.02
26 27 3.075884 GAGCTAGGGTGTAGATCGGTAG 58.924 54.545 0.00 0.00 0.00 3.18
27 28 2.709934 AGCTAGGGTGTAGATCGGTAGA 59.290 50.000 0.00 0.00 0.00 2.59
28 29 3.075884 GCTAGGGTGTAGATCGGTAGAG 58.924 54.545 0.00 0.00 0.00 2.43
29 30 2.660670 AGGGTGTAGATCGGTAGAGG 57.339 55.000 0.00 0.00 0.00 3.69
30 31 1.145325 AGGGTGTAGATCGGTAGAGGG 59.855 57.143 0.00 0.00 0.00 4.30
31 32 1.144503 GGGTGTAGATCGGTAGAGGGA 59.855 57.143 0.00 0.00 0.00 4.20
32 33 2.423947 GGGTGTAGATCGGTAGAGGGAA 60.424 54.545 0.00 0.00 0.00 3.97
33 34 3.294214 GGTGTAGATCGGTAGAGGGAAA 58.706 50.000 0.00 0.00 0.00 3.13
34 35 3.318557 GGTGTAGATCGGTAGAGGGAAAG 59.681 52.174 0.00 0.00 0.00 2.62
35 36 4.205587 GTGTAGATCGGTAGAGGGAAAGA 58.794 47.826 0.00 0.00 0.00 2.52
36 37 4.036616 GTGTAGATCGGTAGAGGGAAAGAC 59.963 50.000 0.00 0.00 0.00 3.01
37 38 3.673543 AGATCGGTAGAGGGAAAGACT 57.326 47.619 0.00 0.00 0.00 3.24
38 39 3.983821 AGATCGGTAGAGGGAAAGACTT 58.016 45.455 0.00 0.00 0.00 3.01
39 40 3.955551 AGATCGGTAGAGGGAAAGACTTC 59.044 47.826 0.00 0.00 0.00 3.01
40 41 2.089980 TCGGTAGAGGGAAAGACTTCG 58.910 52.381 0.00 0.00 31.77 3.79
41 42 1.469423 CGGTAGAGGGAAAGACTTCGC 60.469 57.143 0.00 0.00 43.17 4.70
42 43 1.469423 GGTAGAGGGAAAGACTTCGCG 60.469 57.143 0.00 0.00 46.40 5.87
43 44 0.172803 TAGAGGGAAAGACTTCGCGC 59.827 55.000 0.00 0.00 46.40 6.86
44 45 2.432628 AGGGAAAGACTTCGCGCG 60.433 61.111 26.76 26.76 46.40 6.86
45 46 4.148645 GGGAAAGACTTCGCGCGC 62.149 66.667 27.95 23.91 35.12 6.86
46 47 3.411351 GGAAAGACTTCGCGCGCA 61.411 61.111 32.61 15.11 31.77 6.09
47 48 2.202058 GAAAGACTTCGCGCGCAC 60.202 61.111 32.61 15.49 0.00 5.34
48 49 3.631049 GAAAGACTTCGCGCGCACC 62.631 63.158 32.61 13.85 0.00 5.01
58 59 3.276091 CGCGCACCCACTGTTCAA 61.276 61.111 8.75 0.00 0.00 2.69
59 60 2.829206 CGCGCACCCACTGTTCAAA 61.829 57.895 8.75 0.00 0.00 2.69
60 61 1.299089 GCGCACCCACTGTTCAAAC 60.299 57.895 0.30 0.00 0.00 2.93
61 62 1.358759 CGCACCCACTGTTCAAACC 59.641 57.895 0.00 0.00 0.00 3.27
62 63 1.101049 CGCACCCACTGTTCAAACCT 61.101 55.000 0.00 0.00 0.00 3.50
63 64 1.111277 GCACCCACTGTTCAAACCTT 58.889 50.000 0.00 0.00 0.00 3.50
64 65 2.303175 GCACCCACTGTTCAAACCTTA 58.697 47.619 0.00 0.00 0.00 2.69
65 66 2.691011 GCACCCACTGTTCAAACCTTAA 59.309 45.455 0.00 0.00 0.00 1.85
66 67 3.243401 GCACCCACTGTTCAAACCTTAAG 60.243 47.826 0.00 0.00 0.00 1.85
67 68 3.317993 CACCCACTGTTCAAACCTTAAGG 59.682 47.826 20.42 20.42 42.17 2.69
68 69 2.890945 CCCACTGTTCAAACCTTAAGGG 59.109 50.000 25.31 8.14 40.27 3.95
78 79 3.349879 CCTTAAGGGTTTGCCGGAA 57.650 52.632 14.25 0.00 34.97 4.30
79 80 0.885879 CCTTAAGGGTTTGCCGGAAC 59.114 55.000 14.25 0.29 34.97 3.62
80 81 0.885879 CTTAAGGGTTTGCCGGAACC 59.114 55.000 15.21 15.21 46.70 3.62
84 85 3.299977 GGTTTGCCGGAACCCCAC 61.300 66.667 5.05 0.00 42.63 4.61
85 86 2.519780 GTTTGCCGGAACCCCACA 60.520 61.111 5.05 0.00 0.00 4.17
86 87 1.906333 GTTTGCCGGAACCCCACAT 60.906 57.895 5.05 0.00 0.00 3.21
87 88 1.605165 TTTGCCGGAACCCCACATC 60.605 57.895 5.05 0.00 0.00 3.06
88 89 3.577334 TTGCCGGAACCCCACATCC 62.577 63.158 5.05 0.00 0.00 3.51
92 93 3.074281 GGAACCCCACATCCGACA 58.926 61.111 0.00 0.00 0.00 4.35
93 94 1.078426 GGAACCCCACATCCGACAG 60.078 63.158 0.00 0.00 0.00 3.51
94 95 1.677552 GAACCCCACATCCGACAGT 59.322 57.895 0.00 0.00 0.00 3.55
95 96 0.899720 GAACCCCACATCCGACAGTA 59.100 55.000 0.00 0.00 0.00 2.74
96 97 0.611714 AACCCCACATCCGACAGTAC 59.388 55.000 0.00 0.00 0.00 2.73
97 98 1.262640 ACCCCACATCCGACAGTACC 61.263 60.000 0.00 0.00 0.00 3.34
98 99 1.520666 CCCACATCCGACAGTACCC 59.479 63.158 0.00 0.00 0.00 3.69
99 100 1.141019 CCACATCCGACAGTACCCG 59.859 63.158 0.00 0.00 0.00 5.28
100 101 1.317431 CCACATCCGACAGTACCCGA 61.317 60.000 2.08 0.00 0.00 5.14
101 102 0.744874 CACATCCGACAGTACCCGAT 59.255 55.000 2.08 0.00 0.00 4.18
102 103 0.744874 ACATCCGACAGTACCCGATG 59.255 55.000 2.08 0.00 0.00 3.84
103 104 0.032130 CATCCGACAGTACCCGATGG 59.968 60.000 2.08 0.00 37.80 3.51
104 105 0.106369 ATCCGACAGTACCCGATGGA 60.106 55.000 2.08 0.00 34.81 3.41
105 106 0.750546 TCCGACAGTACCCGATGGAG 60.751 60.000 2.08 0.00 34.81 3.86
106 107 1.035932 CCGACAGTACCCGATGGAGT 61.036 60.000 2.08 0.00 34.81 3.85
107 108 1.671979 CGACAGTACCCGATGGAGTA 58.328 55.000 0.00 0.00 34.81 2.59
108 109 1.332997 CGACAGTACCCGATGGAGTAC 59.667 57.143 0.00 0.00 39.31 2.73
109 110 1.332997 GACAGTACCCGATGGAGTACG 59.667 57.143 0.00 0.00 42.92 3.67
110 111 1.340405 ACAGTACCCGATGGAGTACGT 60.340 52.381 0.00 0.00 42.92 3.57
111 112 2.092968 ACAGTACCCGATGGAGTACGTA 60.093 50.000 0.00 0.00 42.92 3.57
112 113 3.144506 CAGTACCCGATGGAGTACGTAT 58.855 50.000 0.00 0.00 42.92 3.06
113 114 3.058432 CAGTACCCGATGGAGTACGTATG 60.058 52.174 0.00 0.00 42.92 2.39
114 115 2.062971 ACCCGATGGAGTACGTATGT 57.937 50.000 0.00 0.00 34.81 2.29
115 116 1.679680 ACCCGATGGAGTACGTATGTG 59.320 52.381 0.00 0.00 34.81 3.21
116 117 1.602165 CCCGATGGAGTACGTATGTGC 60.602 57.143 0.00 0.00 0.00 4.57
117 118 1.337071 CCGATGGAGTACGTATGTGCT 59.663 52.381 5.26 5.26 44.30 4.40
118 119 2.551032 CCGATGGAGTACGTATGTGCTA 59.449 50.000 5.60 0.00 41.46 3.49
119 120 3.552541 CGATGGAGTACGTATGTGCTAC 58.447 50.000 8.39 8.39 41.46 3.58
120 121 3.250280 CGATGGAGTACGTATGTGCTACT 59.750 47.826 15.49 3.03 41.82 2.57
121 122 4.537965 GATGGAGTACGTATGTGCTACTG 58.462 47.826 15.49 0.00 41.82 2.74
122 123 3.613030 TGGAGTACGTATGTGCTACTGA 58.387 45.455 15.49 0.00 41.82 3.41
123 124 4.011698 TGGAGTACGTATGTGCTACTGAA 58.988 43.478 15.49 0.00 41.82 3.02
124 125 4.460034 TGGAGTACGTATGTGCTACTGAAA 59.540 41.667 15.49 0.00 41.82 2.69
125 126 5.035443 GGAGTACGTATGTGCTACTGAAAG 58.965 45.833 8.08 0.00 41.46 2.62
126 127 5.163683 GGAGTACGTATGTGCTACTGAAAGA 60.164 44.000 8.08 0.00 41.46 2.52
127 128 6.452494 AGTACGTATGTGCTACTGAAAGAT 57.548 37.500 3.59 0.00 39.45 2.40
128 129 6.864342 AGTACGTATGTGCTACTGAAAGATT 58.136 36.000 3.59 0.00 39.45 2.40
129 130 7.321153 AGTACGTATGTGCTACTGAAAGATTT 58.679 34.615 3.59 0.00 39.45 2.17
130 131 6.408858 ACGTATGTGCTACTGAAAGATTTG 57.591 37.500 0.00 0.00 37.43 2.32
131 132 5.351465 ACGTATGTGCTACTGAAAGATTTGG 59.649 40.000 0.00 0.00 37.43 3.28
132 133 5.220662 CGTATGTGCTACTGAAAGATTTGGG 60.221 44.000 0.00 0.00 37.43 4.12
133 134 4.098914 TGTGCTACTGAAAGATTTGGGT 57.901 40.909 0.00 0.00 37.43 4.51
134 135 3.820467 TGTGCTACTGAAAGATTTGGGTG 59.180 43.478 0.00 0.00 37.43 4.61
135 136 2.819608 TGCTACTGAAAGATTTGGGTGC 59.180 45.455 0.00 0.00 37.43 5.01
136 137 3.084786 GCTACTGAAAGATTTGGGTGCT 58.915 45.455 0.00 0.00 37.43 4.40
137 138 3.119708 GCTACTGAAAGATTTGGGTGCTG 60.120 47.826 0.00 0.00 37.43 4.41
138 139 2.949447 ACTGAAAGATTTGGGTGCTGT 58.051 42.857 0.00 0.00 37.43 4.40
139 140 3.299503 ACTGAAAGATTTGGGTGCTGTT 58.700 40.909 0.00 0.00 37.43 3.16
140 141 3.706086 ACTGAAAGATTTGGGTGCTGTTT 59.294 39.130 0.00 0.00 37.43 2.83
141 142 4.053295 CTGAAAGATTTGGGTGCTGTTTG 58.947 43.478 0.00 0.00 34.07 2.93
142 143 3.181467 TGAAAGATTTGGGTGCTGTTTGG 60.181 43.478 0.00 0.00 0.00 3.28
143 144 2.086610 AGATTTGGGTGCTGTTTGGT 57.913 45.000 0.00 0.00 0.00 3.67
144 145 2.397597 AGATTTGGGTGCTGTTTGGTT 58.602 42.857 0.00 0.00 0.00 3.67
145 146 2.771372 AGATTTGGGTGCTGTTTGGTTT 59.229 40.909 0.00 0.00 0.00 3.27
146 147 2.682155 TTTGGGTGCTGTTTGGTTTC 57.318 45.000 0.00 0.00 0.00 2.78
147 148 1.859302 TTGGGTGCTGTTTGGTTTCT 58.141 45.000 0.00 0.00 0.00 2.52
148 149 2.738587 TGGGTGCTGTTTGGTTTCTA 57.261 45.000 0.00 0.00 0.00 2.10
149 150 2.582052 TGGGTGCTGTTTGGTTTCTAG 58.418 47.619 0.00 0.00 0.00 2.43
150 151 1.269723 GGGTGCTGTTTGGTTTCTAGC 59.730 52.381 0.00 0.00 35.06 3.42
151 152 1.269723 GGTGCTGTTTGGTTTCTAGCC 59.730 52.381 0.00 0.00 33.60 3.93
152 153 1.953686 GTGCTGTTTGGTTTCTAGCCA 59.046 47.619 0.00 0.00 33.60 4.75
153 154 1.953686 TGCTGTTTGGTTTCTAGCCAC 59.046 47.619 0.00 0.00 35.46 5.01
154 155 1.953686 GCTGTTTGGTTTCTAGCCACA 59.046 47.619 0.00 0.00 35.46 4.17
155 156 2.287608 GCTGTTTGGTTTCTAGCCACAC 60.288 50.000 0.00 0.00 37.25 3.82
156 157 2.293399 CTGTTTGGTTTCTAGCCACACC 59.707 50.000 2.81 0.00 36.23 4.16
157 158 2.092103 TGTTTGGTTTCTAGCCACACCT 60.092 45.455 2.81 0.00 36.23 4.00
158 159 2.956333 GTTTGGTTTCTAGCCACACCTT 59.044 45.455 0.00 0.00 35.46 3.50
159 160 2.270352 TGGTTTCTAGCCACACCTTG 57.730 50.000 0.00 0.00 0.00 3.61
160 161 0.881796 GGTTTCTAGCCACACCTTGC 59.118 55.000 0.00 0.00 0.00 4.01
161 162 0.881796 GTTTCTAGCCACACCTTGCC 59.118 55.000 0.00 0.00 0.00 4.52
162 163 0.476338 TTTCTAGCCACACCTTGCCA 59.524 50.000 0.00 0.00 0.00 4.92
163 164 0.250727 TTCTAGCCACACCTTGCCAC 60.251 55.000 0.00 0.00 0.00 5.01
164 165 1.073025 CTAGCCACACCTTGCCACA 59.927 57.895 0.00 0.00 0.00 4.17
165 166 1.228124 TAGCCACACCTTGCCACAC 60.228 57.895 0.00 0.00 0.00 3.82
166 167 1.705002 TAGCCACACCTTGCCACACT 61.705 55.000 0.00 0.00 0.00 3.55
167 168 2.127232 GCCACACCTTGCCACACTT 61.127 57.895 0.00 0.00 0.00 3.16
168 169 1.675720 GCCACACCTTGCCACACTTT 61.676 55.000 0.00 0.00 0.00 2.66
169 170 0.102844 CCACACCTTGCCACACTTTG 59.897 55.000 0.00 0.00 0.00 2.77
170 171 0.528249 CACACCTTGCCACACTTTGC 60.528 55.000 0.00 0.00 0.00 3.68
171 172 1.067916 CACCTTGCCACACTTTGCC 59.932 57.895 0.00 0.00 0.00 4.52
172 173 1.381056 ACCTTGCCACACTTTGCCA 60.381 52.632 0.00 0.00 0.00 4.92
173 174 1.067916 CCTTGCCACACTTTGCCAC 59.932 57.895 0.00 0.00 0.00 5.01
174 175 1.674764 CCTTGCCACACTTTGCCACA 61.675 55.000 0.00 0.00 0.00 4.17
175 176 0.528249 CTTGCCACACTTTGCCACAC 60.528 55.000 0.00 0.00 0.00 3.82
176 177 1.954362 TTGCCACACTTTGCCACACC 61.954 55.000 0.00 0.00 0.00 4.16
177 178 2.127232 GCCACACTTTGCCACACCT 61.127 57.895 0.00 0.00 0.00 4.00
178 179 0.821711 GCCACACTTTGCCACACCTA 60.822 55.000 0.00 0.00 0.00 3.08
179 180 1.686355 CCACACTTTGCCACACCTAA 58.314 50.000 0.00 0.00 0.00 2.69
180 181 1.336755 CCACACTTTGCCACACCTAAC 59.663 52.381 0.00 0.00 0.00 2.34
181 182 1.336755 CACACTTTGCCACACCTAACC 59.663 52.381 0.00 0.00 0.00 2.85
182 183 1.214424 ACACTTTGCCACACCTAACCT 59.786 47.619 0.00 0.00 0.00 3.50
183 184 2.306847 CACTTTGCCACACCTAACCTT 58.693 47.619 0.00 0.00 0.00 3.50
184 185 3.117813 ACACTTTGCCACACCTAACCTTA 60.118 43.478 0.00 0.00 0.00 2.69
185 186 3.502211 CACTTTGCCACACCTAACCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
212 213 6.435292 ACTTTGACCAAGTTAGATAGGTGT 57.565 37.500 0.00 0.00 43.89 4.16
213 214 6.838382 ACTTTGACCAAGTTAGATAGGTGTT 58.162 36.000 0.00 0.00 43.89 3.32
214 215 7.287810 ACTTTGACCAAGTTAGATAGGTGTTT 58.712 34.615 0.00 0.00 43.89 2.83
215 216 7.228706 ACTTTGACCAAGTTAGATAGGTGTTTG 59.771 37.037 0.00 0.00 43.89 2.93
216 217 5.556915 TGACCAAGTTAGATAGGTGTTTGG 58.443 41.667 0.00 0.00 39.49 3.28
217 218 5.072600 TGACCAAGTTAGATAGGTGTTTGGT 59.927 40.000 5.75 5.75 46.75 3.67
218 219 5.948842 ACCAAGTTAGATAGGTGTTTGGTT 58.051 37.500 0.44 0.00 42.92 3.67
219 220 6.002082 ACCAAGTTAGATAGGTGTTTGGTTC 58.998 40.000 0.44 0.00 42.92 3.62
220 221 6.183361 ACCAAGTTAGATAGGTGTTTGGTTCT 60.183 38.462 0.44 0.00 42.92 3.01
221 222 7.016858 ACCAAGTTAGATAGGTGTTTGGTTCTA 59.983 37.037 0.44 0.00 42.92 2.10
222 223 7.549488 CCAAGTTAGATAGGTGTTTGGTTCTAG 59.451 40.741 0.00 0.00 31.33 2.43
223 224 6.641474 AGTTAGATAGGTGTTTGGTTCTAGC 58.359 40.000 0.00 0.00 0.00 3.42
224 225 4.489306 AGATAGGTGTTTGGTTCTAGCC 57.511 45.455 0.00 0.00 0.00 3.93
225 226 3.844211 AGATAGGTGTTTGGTTCTAGCCA 59.156 43.478 0.00 0.00 36.62 4.75
226 227 2.271944 AGGTGTTTGGTTCTAGCCAC 57.728 50.000 0.00 0.00 38.42 5.01
227 228 1.493022 AGGTGTTTGGTTCTAGCCACA 59.507 47.619 0.00 0.00 38.42 4.17
228 229 1.607148 GGTGTTTGGTTCTAGCCACAC 59.393 52.381 0.16 0.16 39.10 3.82
229 230 1.607148 GTGTTTGGTTCTAGCCACACC 59.393 52.381 3.97 0.00 38.17 4.16
230 231 1.493022 TGTTTGGTTCTAGCCACACCT 59.507 47.619 3.97 0.00 38.17 4.00
231 232 2.706723 TGTTTGGTTCTAGCCACACCTA 59.293 45.455 3.97 0.00 38.17 3.08
232 233 3.136809 TGTTTGGTTCTAGCCACACCTAA 59.863 43.478 3.97 0.22 38.17 2.69
233 234 3.695830 TTGGTTCTAGCCACACCTAAG 57.304 47.619 0.00 0.00 38.42 2.18
234 235 1.906574 TGGTTCTAGCCACACCTAAGG 59.093 52.381 0.00 0.00 32.81 2.69
244 245 4.871933 CCACACCTAAGGCAAGAATTTT 57.128 40.909 0.00 0.00 0.00 1.82
245 246 5.213891 CCACACCTAAGGCAAGAATTTTT 57.786 39.130 0.00 0.00 0.00 1.94
265 266 4.799564 TTTTATGAGCAATGAACCCCAC 57.200 40.909 0.00 0.00 0.00 4.61
266 267 3.448093 TTATGAGCAATGAACCCCACA 57.552 42.857 0.00 0.00 0.00 4.17
267 268 2.537633 ATGAGCAATGAACCCCACAT 57.462 45.000 0.00 0.00 0.00 3.21
268 269 1.548081 TGAGCAATGAACCCCACATG 58.452 50.000 0.00 0.00 0.00 3.21
269 270 1.203038 TGAGCAATGAACCCCACATGT 60.203 47.619 0.00 0.00 0.00 3.21
270 271 1.474077 GAGCAATGAACCCCACATGTC 59.526 52.381 0.00 0.00 0.00 3.06
271 272 1.203038 AGCAATGAACCCCACATGTCA 60.203 47.619 0.00 0.00 0.00 3.58
272 273 1.826720 GCAATGAACCCCACATGTCAT 59.173 47.619 0.00 0.00 0.00 3.06
273 274 3.023119 GCAATGAACCCCACATGTCATA 58.977 45.455 0.00 0.00 0.00 2.15
274 275 3.067180 GCAATGAACCCCACATGTCATAG 59.933 47.826 0.00 0.00 0.00 2.23
275 276 4.525996 CAATGAACCCCACATGTCATAGA 58.474 43.478 0.00 0.00 0.00 1.98
276 277 3.627395 TGAACCCCACATGTCATAGAC 57.373 47.619 0.00 0.00 0.00 2.59
277 278 2.909662 TGAACCCCACATGTCATAGACA 59.090 45.455 0.00 1.95 46.90 3.41
292 293 8.669946 TGTCATAGACATAAAAAGTGTGACAA 57.330 30.769 0.00 0.00 37.67 3.18
293 294 8.773645 TGTCATAGACATAAAAAGTGTGACAAG 58.226 33.333 0.00 0.00 37.67 3.16
294 295 8.988934 GTCATAGACATAAAAAGTGTGACAAGA 58.011 33.333 0.00 0.00 32.09 3.02
295 296 9.725019 TCATAGACATAAAAAGTGTGACAAGAT 57.275 29.630 0.00 0.00 0.00 2.40
298 299 8.450578 AGACATAAAAAGTGTGACAAGATTCA 57.549 30.769 0.00 0.00 0.00 2.57
299 300 8.345565 AGACATAAAAAGTGTGACAAGATTCAC 58.654 33.333 0.00 0.00 45.34 3.18
300 301 8.225603 ACATAAAAAGTGTGACAAGATTCACT 57.774 30.769 4.97 0.00 45.34 3.41
304 305 6.867662 AAAGTGTGACAAGATTCACTTAGG 57.132 37.500 8.36 0.00 46.06 2.69
305 306 4.319177 AGTGTGACAAGATTCACTTAGGC 58.681 43.478 4.97 0.00 45.34 3.93
306 307 4.065088 GTGTGACAAGATTCACTTAGGCA 58.935 43.478 4.97 0.00 45.34 4.75
307 308 4.515191 GTGTGACAAGATTCACTTAGGCAA 59.485 41.667 4.97 0.00 45.34 4.52
308 309 4.756642 TGTGACAAGATTCACTTAGGCAAG 59.243 41.667 4.97 0.00 45.34 4.01
309 310 3.753272 TGACAAGATTCACTTAGGCAAGC 59.247 43.478 0.00 0.00 37.03 4.01
310 311 3.084786 ACAAGATTCACTTAGGCAAGCC 58.915 45.455 2.02 2.02 37.03 4.35
311 312 3.084039 CAAGATTCACTTAGGCAAGCCA 58.916 45.455 14.40 0.00 37.03 4.75
312 313 3.439857 AGATTCACTTAGGCAAGCCAA 57.560 42.857 14.40 4.98 38.92 4.52
313 314 3.766545 AGATTCACTTAGGCAAGCCAAA 58.233 40.909 14.40 0.00 38.92 3.28
314 315 3.760684 AGATTCACTTAGGCAAGCCAAAG 59.239 43.478 14.40 0.00 38.92 2.77
315 316 2.656947 TCACTTAGGCAAGCCAAAGT 57.343 45.000 14.40 0.00 38.92 2.66
316 317 2.229792 TCACTTAGGCAAGCCAAAGTG 58.770 47.619 14.40 8.93 38.92 3.16
317 318 1.956477 CACTTAGGCAAGCCAAAGTGT 59.044 47.619 14.40 2.01 38.92 3.55
318 319 1.956477 ACTTAGGCAAGCCAAAGTGTG 59.044 47.619 14.40 0.00 38.92 3.82
333 334 5.807011 CCAAAGTGTGGCTAATAATTTGAGC 59.193 40.000 9.14 0.00 41.72 4.26
334 335 6.389091 CAAAGTGTGGCTAATAATTTGAGCA 58.611 36.000 7.85 0.00 37.98 4.26
335 336 6.588719 AAGTGTGGCTAATAATTTGAGCAA 57.411 33.333 7.85 0.00 37.98 3.91
336 337 5.954335 AGTGTGGCTAATAATTTGAGCAAC 58.046 37.500 6.53 6.53 40.06 4.17
337 338 5.711976 AGTGTGGCTAATAATTTGAGCAACT 59.288 36.000 12.22 7.91 40.27 3.16
338 339 6.030228 GTGTGGCTAATAATTTGAGCAACTC 58.970 40.000 12.22 7.13 40.27 3.01
339 340 5.709631 TGTGGCTAATAATTTGAGCAACTCA 59.290 36.000 12.22 0.00 40.27 3.41
340 341 6.208402 TGTGGCTAATAATTTGAGCAACTCAA 59.792 34.615 5.94 5.94 46.93 3.02
350 351 4.771590 TGAGCAACTCAAATAAGGCAAG 57.228 40.909 0.00 0.00 37.57 4.01
351 352 4.144297 TGAGCAACTCAAATAAGGCAAGT 58.856 39.130 0.00 0.00 37.57 3.16
352 353 4.022935 TGAGCAACTCAAATAAGGCAAGTG 60.023 41.667 0.00 0.00 37.57 3.16
353 354 3.891366 AGCAACTCAAATAAGGCAAGTGT 59.109 39.130 0.00 0.00 0.00 3.55
354 355 3.983344 GCAACTCAAATAAGGCAAGTGTG 59.017 43.478 0.00 0.00 0.00 3.82
355 356 4.549458 CAACTCAAATAAGGCAAGTGTGG 58.451 43.478 0.00 0.00 0.00 4.17
365 366 3.874392 GGCAAGTGTGGCTAAAATCAT 57.126 42.857 0.00 0.00 46.62 2.45
366 367 3.514645 GGCAAGTGTGGCTAAAATCATG 58.485 45.455 0.00 0.00 46.62 3.07
367 368 3.056607 GGCAAGTGTGGCTAAAATCATGT 60.057 43.478 0.00 0.00 46.62 3.21
368 369 3.922240 GCAAGTGTGGCTAAAATCATGTG 59.078 43.478 0.00 0.00 0.00 3.21
369 370 4.487948 CAAGTGTGGCTAAAATCATGTGG 58.512 43.478 0.00 0.00 0.00 4.17
370 371 2.493278 AGTGTGGCTAAAATCATGTGGC 59.507 45.455 0.00 0.00 0.00 5.01
371 372 2.230992 GTGTGGCTAAAATCATGTGGCA 59.769 45.455 0.00 0.00 0.00 4.92
372 373 2.896044 TGTGGCTAAAATCATGTGGCAA 59.104 40.909 0.00 0.00 35.10 4.52
373 374 3.253230 GTGGCTAAAATCATGTGGCAAC 58.747 45.455 0.00 0.00 35.10 4.17
391 392 5.756195 GCAACATATGGCAAAGATACTCA 57.244 39.130 7.80 0.00 0.00 3.41
392 393 5.514279 GCAACATATGGCAAAGATACTCAC 58.486 41.667 7.80 0.00 0.00 3.51
393 394 5.066375 GCAACATATGGCAAAGATACTCACA 59.934 40.000 7.80 0.00 0.00 3.58
394 395 6.404623 GCAACATATGGCAAAGATACTCACAA 60.405 38.462 7.80 0.00 0.00 3.33
395 396 7.682741 GCAACATATGGCAAAGATACTCACAAT 60.683 37.037 7.80 0.00 0.00 2.71
396 397 7.502120 ACATATGGCAAAGATACTCACAATC 57.498 36.000 7.80 0.00 0.00 2.67
397 398 6.488006 ACATATGGCAAAGATACTCACAATCC 59.512 38.462 7.80 0.00 0.00 3.01
398 399 4.299586 TGGCAAAGATACTCACAATCCA 57.700 40.909 0.00 0.00 0.00 3.41
399 400 4.661222 TGGCAAAGATACTCACAATCCAA 58.339 39.130 0.00 0.00 0.00 3.53
400 401 5.076182 TGGCAAAGATACTCACAATCCAAA 58.924 37.500 0.00 0.00 0.00 3.28
401 402 5.048083 TGGCAAAGATACTCACAATCCAAAC 60.048 40.000 0.00 0.00 0.00 2.93
402 403 5.048083 GGCAAAGATACTCACAATCCAAACA 60.048 40.000 0.00 0.00 0.00 2.83
403 404 6.088824 GCAAAGATACTCACAATCCAAACAG 58.911 40.000 0.00 0.00 0.00 3.16
404 405 5.886960 AAGATACTCACAATCCAAACAGC 57.113 39.130 0.00 0.00 0.00 4.40
405 406 4.265073 AGATACTCACAATCCAAACAGCC 58.735 43.478 0.00 0.00 0.00 4.85
406 407 1.620822 ACTCACAATCCAAACAGCCC 58.379 50.000 0.00 0.00 0.00 5.19
407 408 0.890683 CTCACAATCCAAACAGCCCC 59.109 55.000 0.00 0.00 0.00 5.80
436 437 4.926238 GCGATCGAAGATCTTTCCACATAT 59.074 41.667 21.57 0.00 45.12 1.78
437 438 6.093404 GCGATCGAAGATCTTTCCACATATA 58.907 40.000 21.57 0.00 45.12 0.86
461 465 1.897802 GAACGTTCCAGACCCTTCCTA 59.102 52.381 17.68 0.00 0.00 2.94
489 493 4.767841 CACGCTCTCGCTCACGCT 62.768 66.667 0.00 0.00 39.84 5.07
499 503 2.434884 CTCACGCTGCCGTCCAAT 60.435 61.111 0.00 0.00 46.39 3.16
751 787 4.143333 CCGTGGCCTCCGTCGATT 62.143 66.667 3.32 0.00 0.00 3.34
752 788 2.885644 CGTGGCCTCCGTCGATTG 60.886 66.667 3.32 0.00 0.00 2.67
753 789 2.511600 GTGGCCTCCGTCGATTGG 60.512 66.667 3.32 0.40 0.00 3.16
760 808 2.202878 CCGTCGATTGGTCCGCAT 60.203 61.111 0.00 0.00 0.00 4.73
775 823 4.457496 CATGCGCCAGAGGTCGGT 62.457 66.667 4.18 0.00 0.00 4.69
911 1207 2.975489 TCCATCCATTCTTCCTCCTAGC 59.025 50.000 0.00 0.00 0.00 3.42
924 1220 1.403679 CTCCTAGCACCGAGTTCTCAG 59.596 57.143 0.79 0.00 0.00 3.35
927 1223 2.416162 CCTAGCACCGAGTTCTCAGTTC 60.416 54.545 0.79 0.00 0.00 3.01
958 3165 0.441533 CAGCACAACAGAGCATCGAC 59.558 55.000 0.00 0.00 42.67 4.20
976 7278 2.452813 CCGAATTCCACACGCGAGG 61.453 63.158 15.93 12.21 0.00 4.63
1223 7546 2.165301 GGGCGTTCGAGACATTCCG 61.165 63.158 0.00 0.00 0.00 4.30
1470 11643 4.137615 TCGGATCAGGAGGCGGGA 62.138 66.667 0.00 0.00 0.00 5.14
2197 12536 9.569167 TCCGAATATCGATTCATGTTTATCTAC 57.431 33.333 1.71 0.00 43.74 2.59
2210 14930 6.904463 TGTTTATCTACTACTCACCACACA 57.096 37.500 0.00 0.00 0.00 3.72
2218 14938 1.299541 ACTCACCACACAAGAAAGCG 58.700 50.000 0.00 0.00 0.00 4.68
2494 15221 4.761739 TGCTTCAACCAGACAAGATTAAGG 59.238 41.667 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.723322 TCTACACCCTAGCTCGCTAA 57.277 50.000 0.00 0.00 0.00 3.09
1 2 2.780714 GATCTACACCCTAGCTCGCTA 58.219 52.381 0.00 0.00 0.00 4.26
2 3 1.611519 GATCTACACCCTAGCTCGCT 58.388 55.000 0.00 0.00 0.00 4.93
3 4 0.238817 CGATCTACACCCTAGCTCGC 59.761 60.000 0.00 0.00 0.00 5.03
4 5 0.875728 CCGATCTACACCCTAGCTCG 59.124 60.000 0.00 0.00 34.24 5.03
5 6 1.984066 ACCGATCTACACCCTAGCTC 58.016 55.000 0.00 0.00 0.00 4.09
6 7 2.709934 TCTACCGATCTACACCCTAGCT 59.290 50.000 0.00 0.00 0.00 3.32
8 9 3.559597 CCCTCTACCGATCTACACCCTAG 60.560 56.522 0.00 0.00 0.00 3.02
9 10 2.374504 CCCTCTACCGATCTACACCCTA 59.625 54.545 0.00 0.00 0.00 3.53
10 11 1.145325 CCCTCTACCGATCTACACCCT 59.855 57.143 0.00 0.00 0.00 4.34
11 12 1.144503 TCCCTCTACCGATCTACACCC 59.855 57.143 0.00 0.00 0.00 4.61
12 13 2.653234 TCCCTCTACCGATCTACACC 57.347 55.000 0.00 0.00 0.00 4.16
13 14 4.036616 GTCTTTCCCTCTACCGATCTACAC 59.963 50.000 0.00 0.00 0.00 2.90
14 15 4.079901 AGTCTTTCCCTCTACCGATCTACA 60.080 45.833 0.00 0.00 0.00 2.74
15 16 4.463070 AGTCTTTCCCTCTACCGATCTAC 58.537 47.826 0.00 0.00 0.00 2.59
16 17 4.792513 AGTCTTTCCCTCTACCGATCTA 57.207 45.455 0.00 0.00 0.00 1.98
17 18 3.673543 AGTCTTTCCCTCTACCGATCT 57.326 47.619 0.00 0.00 0.00 2.75
18 19 3.243134 CGAAGTCTTTCCCTCTACCGATC 60.243 52.174 0.00 0.00 0.00 3.69
19 20 2.688958 CGAAGTCTTTCCCTCTACCGAT 59.311 50.000 0.00 0.00 0.00 4.18
20 21 2.089980 CGAAGTCTTTCCCTCTACCGA 58.910 52.381 0.00 0.00 0.00 4.69
21 22 1.469423 GCGAAGTCTTTCCCTCTACCG 60.469 57.143 0.00 0.00 0.00 4.02
22 23 1.469423 CGCGAAGTCTTTCCCTCTACC 60.469 57.143 0.00 0.00 0.00 3.18
23 24 1.910688 CGCGAAGTCTTTCCCTCTAC 58.089 55.000 0.00 0.00 0.00 2.59
24 25 0.172803 GCGCGAAGTCTTTCCCTCTA 59.827 55.000 12.10 0.00 0.00 2.43
25 26 1.079750 GCGCGAAGTCTTTCCCTCT 60.080 57.895 12.10 0.00 0.00 3.69
26 27 2.445438 CGCGCGAAGTCTTTCCCTC 61.445 63.158 28.94 0.00 0.00 4.30
27 28 2.432628 CGCGCGAAGTCTTTCCCT 60.433 61.111 28.94 0.00 0.00 4.20
28 29 4.148645 GCGCGCGAAGTCTTTCCC 62.149 66.667 37.18 7.60 0.00 3.97
29 30 3.411351 TGCGCGCGAAGTCTTTCC 61.411 61.111 37.18 13.06 0.00 3.13
30 31 2.202058 GTGCGCGCGAAGTCTTTC 60.202 61.111 37.18 13.89 0.00 2.62
31 32 3.712881 GGTGCGCGCGAAGTCTTT 61.713 61.111 37.18 0.00 0.00 2.52
41 42 2.829206 TTTGAACAGTGGGTGCGCG 61.829 57.895 0.00 0.00 0.00 6.86
42 43 1.299089 GTTTGAACAGTGGGTGCGC 60.299 57.895 0.00 0.00 0.00 6.09
43 44 1.101049 AGGTTTGAACAGTGGGTGCG 61.101 55.000 0.00 0.00 0.00 5.34
44 45 1.111277 AAGGTTTGAACAGTGGGTGC 58.889 50.000 0.00 0.00 0.00 5.01
45 46 3.317993 CCTTAAGGTTTGAACAGTGGGTG 59.682 47.826 13.83 0.00 0.00 4.61
46 47 3.562182 CCTTAAGGTTTGAACAGTGGGT 58.438 45.455 13.83 0.00 0.00 4.51
47 48 2.890945 CCCTTAAGGTTTGAACAGTGGG 59.109 50.000 20.22 0.00 0.00 4.61
60 61 0.885879 GTTCCGGCAAACCCTTAAGG 59.114 55.000 15.14 15.14 43.78 2.69
61 62 0.885879 GGTTCCGGCAAACCCTTAAG 59.114 55.000 13.01 0.00 42.46 1.85
62 63 3.039452 GGTTCCGGCAAACCCTTAA 57.961 52.632 13.01 0.00 42.46 1.85
63 64 4.826248 GGTTCCGGCAAACCCTTA 57.174 55.556 13.01 0.00 42.46 2.69
67 68 3.299977 GTGGGGTTCCGGCAAACC 61.300 66.667 15.21 15.21 46.66 3.27
68 69 1.873270 GATGTGGGGTTCCGGCAAAC 61.873 60.000 0.00 0.00 35.24 2.93
69 70 1.605165 GATGTGGGGTTCCGGCAAA 60.605 57.895 0.00 0.00 35.24 3.68
70 71 2.034999 GATGTGGGGTTCCGGCAA 59.965 61.111 0.00 0.00 35.24 4.52
71 72 4.041762 GGATGTGGGGTTCCGGCA 62.042 66.667 0.00 0.00 35.24 5.69
75 76 1.078426 CTGTCGGATGTGGGGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
76 77 0.899720 TACTGTCGGATGTGGGGTTC 59.100 55.000 0.00 0.00 0.00 3.62
77 78 0.611714 GTACTGTCGGATGTGGGGTT 59.388 55.000 0.00 0.00 0.00 4.11
78 79 1.262640 GGTACTGTCGGATGTGGGGT 61.263 60.000 0.00 0.00 0.00 4.95
79 80 1.520666 GGTACTGTCGGATGTGGGG 59.479 63.158 0.00 0.00 0.00 4.96
80 81 1.520666 GGGTACTGTCGGATGTGGG 59.479 63.158 0.00 0.00 0.00 4.61
81 82 1.141019 CGGGTACTGTCGGATGTGG 59.859 63.158 0.00 0.00 0.00 4.17
82 83 0.744874 ATCGGGTACTGTCGGATGTG 59.255 55.000 0.00 0.00 35.30 3.21
83 84 0.744874 CATCGGGTACTGTCGGATGT 59.255 55.000 8.86 0.00 37.26 3.06
84 85 0.032130 CCATCGGGTACTGTCGGATG 59.968 60.000 9.66 9.66 39.85 3.51
85 86 0.106369 TCCATCGGGTACTGTCGGAT 60.106 55.000 0.00 0.00 32.78 4.18
86 87 0.750546 CTCCATCGGGTACTGTCGGA 60.751 60.000 0.00 0.00 35.50 4.55
87 88 1.035932 ACTCCATCGGGTACTGTCGG 61.036 60.000 0.00 0.00 35.30 4.79
88 89 1.332997 GTACTCCATCGGGTACTGTCG 59.667 57.143 0.00 0.00 36.39 4.35
89 90 1.332997 CGTACTCCATCGGGTACTGTC 59.667 57.143 0.00 0.00 36.94 3.51
90 91 1.340405 ACGTACTCCATCGGGTACTGT 60.340 52.381 0.00 0.00 36.94 3.55
91 92 1.386533 ACGTACTCCATCGGGTACTG 58.613 55.000 0.00 0.00 36.94 2.74
92 93 3.144506 CATACGTACTCCATCGGGTACT 58.855 50.000 0.00 0.00 36.94 2.73
93 94 2.880890 ACATACGTACTCCATCGGGTAC 59.119 50.000 0.00 0.00 36.08 3.34
94 95 2.880268 CACATACGTACTCCATCGGGTA 59.120 50.000 0.00 0.00 34.93 3.69
95 96 1.679680 CACATACGTACTCCATCGGGT 59.320 52.381 0.00 0.00 34.93 5.28
96 97 1.602165 GCACATACGTACTCCATCGGG 60.602 57.143 0.00 0.00 0.00 5.14
97 98 1.337071 AGCACATACGTACTCCATCGG 59.663 52.381 0.00 0.00 0.00 4.18
98 99 2.776312 AGCACATACGTACTCCATCG 57.224 50.000 0.00 0.00 0.00 3.84
99 100 4.275196 TCAGTAGCACATACGTACTCCATC 59.725 45.833 0.00 0.00 39.55 3.51
100 101 4.204799 TCAGTAGCACATACGTACTCCAT 58.795 43.478 0.00 0.00 39.55 3.41
101 102 3.613030 TCAGTAGCACATACGTACTCCA 58.387 45.455 0.00 0.00 39.55 3.86
102 103 4.627611 TTCAGTAGCACATACGTACTCC 57.372 45.455 0.00 0.00 39.55 3.85
103 104 5.877031 TCTTTCAGTAGCACATACGTACTC 58.123 41.667 0.00 0.00 39.55 2.59
104 105 5.892160 TCTTTCAGTAGCACATACGTACT 57.108 39.130 0.00 0.00 39.55 2.73
105 106 7.391786 CAAATCTTTCAGTAGCACATACGTAC 58.608 38.462 0.00 0.00 39.55 3.67
106 107 6.533723 CCAAATCTTTCAGTAGCACATACGTA 59.466 38.462 0.00 0.00 39.55 3.57
107 108 5.351465 CCAAATCTTTCAGTAGCACATACGT 59.649 40.000 0.00 0.00 39.55 3.57
108 109 5.220662 CCCAAATCTTTCAGTAGCACATACG 60.221 44.000 0.00 0.00 39.55 3.06
109 110 5.648092 ACCCAAATCTTTCAGTAGCACATAC 59.352 40.000 0.00 0.00 34.30 2.39
110 111 5.647658 CACCCAAATCTTTCAGTAGCACATA 59.352 40.000 0.00 0.00 0.00 2.29
111 112 4.460382 CACCCAAATCTTTCAGTAGCACAT 59.540 41.667 0.00 0.00 0.00 3.21
112 113 3.820467 CACCCAAATCTTTCAGTAGCACA 59.180 43.478 0.00 0.00 0.00 4.57
113 114 3.366374 GCACCCAAATCTTTCAGTAGCAC 60.366 47.826 0.00 0.00 0.00 4.40
114 115 2.819608 GCACCCAAATCTTTCAGTAGCA 59.180 45.455 0.00 0.00 0.00 3.49
115 116 3.084786 AGCACCCAAATCTTTCAGTAGC 58.915 45.455 0.00 0.00 0.00 3.58
116 117 4.074970 ACAGCACCCAAATCTTTCAGTAG 58.925 43.478 0.00 0.00 0.00 2.57
117 118 4.098914 ACAGCACCCAAATCTTTCAGTA 57.901 40.909 0.00 0.00 0.00 2.74
118 119 2.949447 ACAGCACCCAAATCTTTCAGT 58.051 42.857 0.00 0.00 0.00 3.41
119 120 4.053295 CAAACAGCACCCAAATCTTTCAG 58.947 43.478 0.00 0.00 0.00 3.02
120 121 3.181467 CCAAACAGCACCCAAATCTTTCA 60.181 43.478 0.00 0.00 0.00 2.69
121 122 3.181466 ACCAAACAGCACCCAAATCTTTC 60.181 43.478 0.00 0.00 0.00 2.62
122 123 2.771372 ACCAAACAGCACCCAAATCTTT 59.229 40.909 0.00 0.00 0.00 2.52
123 124 2.397597 ACCAAACAGCACCCAAATCTT 58.602 42.857 0.00 0.00 0.00 2.40
124 125 2.086610 ACCAAACAGCACCCAAATCT 57.913 45.000 0.00 0.00 0.00 2.40
125 126 2.908688 AACCAAACAGCACCCAAATC 57.091 45.000 0.00 0.00 0.00 2.17
126 127 2.771372 AGAAACCAAACAGCACCCAAAT 59.229 40.909 0.00 0.00 0.00 2.32
127 128 2.183679 AGAAACCAAACAGCACCCAAA 58.816 42.857 0.00 0.00 0.00 3.28
128 129 1.859302 AGAAACCAAACAGCACCCAA 58.141 45.000 0.00 0.00 0.00 4.12
129 130 2.582052 CTAGAAACCAAACAGCACCCA 58.418 47.619 0.00 0.00 0.00 4.51
130 131 1.269723 GCTAGAAACCAAACAGCACCC 59.730 52.381 0.00 0.00 32.46 4.61
131 132 1.269723 GGCTAGAAACCAAACAGCACC 59.730 52.381 0.00 0.00 33.86 5.01
132 133 1.953686 TGGCTAGAAACCAAACAGCAC 59.046 47.619 0.00 0.00 33.12 4.40
133 134 1.953686 GTGGCTAGAAACCAAACAGCA 59.046 47.619 0.00 0.00 39.39 4.41
134 135 1.953686 TGTGGCTAGAAACCAAACAGC 59.046 47.619 0.00 0.00 39.39 4.40
135 136 2.293399 GGTGTGGCTAGAAACCAAACAG 59.707 50.000 9.60 0.00 45.81 3.16
136 137 2.092103 AGGTGTGGCTAGAAACCAAACA 60.092 45.455 9.60 0.00 45.81 2.83
137 138 2.583143 AGGTGTGGCTAGAAACCAAAC 58.417 47.619 0.00 0.00 43.64 2.93
138 139 2.955660 CAAGGTGTGGCTAGAAACCAAA 59.044 45.455 0.00 0.00 39.39 3.28
139 140 2.582052 CAAGGTGTGGCTAGAAACCAA 58.418 47.619 0.00 0.00 39.39 3.67
140 141 1.817740 GCAAGGTGTGGCTAGAAACCA 60.818 52.381 0.00 0.00 35.01 3.67
141 142 0.881796 GCAAGGTGTGGCTAGAAACC 59.118 55.000 0.00 0.00 0.00 3.27
150 151 0.102844 CAAAGTGTGGCAAGGTGTGG 59.897 55.000 0.00 0.00 0.00 4.17
151 152 0.528249 GCAAAGTGTGGCAAGGTGTG 60.528 55.000 0.00 0.00 0.00 3.82
152 153 1.815866 GCAAAGTGTGGCAAGGTGT 59.184 52.632 0.00 0.00 0.00 4.16
153 154 4.736165 GCAAAGTGTGGCAAGGTG 57.264 55.556 0.00 0.00 0.00 4.00
160 161 1.336755 GTTAGGTGTGGCAAAGTGTGG 59.663 52.381 0.00 0.00 0.00 4.17
161 162 1.336755 GGTTAGGTGTGGCAAAGTGTG 59.663 52.381 0.00 0.00 0.00 3.82
162 163 1.214424 AGGTTAGGTGTGGCAAAGTGT 59.786 47.619 0.00 0.00 0.00 3.55
163 164 1.981256 AGGTTAGGTGTGGCAAAGTG 58.019 50.000 0.00 0.00 0.00 3.16
164 165 2.748209 AAGGTTAGGTGTGGCAAAGT 57.252 45.000 0.00 0.00 0.00 2.66
165 166 3.081804 CCTAAGGTTAGGTGTGGCAAAG 58.918 50.000 7.53 0.00 44.26 2.77
166 167 3.149005 CCTAAGGTTAGGTGTGGCAAA 57.851 47.619 7.53 0.00 44.26 3.68
167 168 2.871096 CCTAAGGTTAGGTGTGGCAA 57.129 50.000 7.53 0.00 44.26 4.52
176 177 4.394729 TGGTCAAAGTTGCCTAAGGTTAG 58.605 43.478 6.22 0.00 0.00 2.34
177 178 4.440826 TGGTCAAAGTTGCCTAAGGTTA 57.559 40.909 6.22 0.00 0.00 2.85
178 179 3.306472 TGGTCAAAGTTGCCTAAGGTT 57.694 42.857 6.22 0.00 0.00 3.50
179 180 3.222603 CTTGGTCAAAGTTGCCTAAGGT 58.777 45.455 6.22 0.00 0.00 3.50
180 181 3.923017 CTTGGTCAAAGTTGCCTAAGG 57.077 47.619 6.22 0.00 0.00 2.69
190 191 7.308589 CCAAACACCTATCTAACTTGGTCAAAG 60.309 40.741 0.00 0.00 42.07 2.77
191 192 6.488683 CCAAACACCTATCTAACTTGGTCAAA 59.511 38.462 0.00 0.00 0.00 2.69
192 193 6.001460 CCAAACACCTATCTAACTTGGTCAA 58.999 40.000 0.00 0.00 0.00 3.18
193 194 5.072600 ACCAAACACCTATCTAACTTGGTCA 59.927 40.000 0.00 0.00 40.75 4.02
194 195 5.557866 ACCAAACACCTATCTAACTTGGTC 58.442 41.667 0.00 0.00 40.75 4.02
195 196 5.578157 ACCAAACACCTATCTAACTTGGT 57.422 39.130 0.00 0.00 40.09 3.67
196 197 6.238648 AGAACCAAACACCTATCTAACTTGG 58.761 40.000 0.00 0.00 38.23 3.61
197 198 7.064728 GCTAGAACCAAACACCTATCTAACTTG 59.935 40.741 0.00 0.00 0.00 3.16
198 199 7.104290 GCTAGAACCAAACACCTATCTAACTT 58.896 38.462 0.00 0.00 0.00 2.66
199 200 6.351966 GGCTAGAACCAAACACCTATCTAACT 60.352 42.308 0.00 0.00 0.00 2.24
200 201 5.816258 GGCTAGAACCAAACACCTATCTAAC 59.184 44.000 0.00 0.00 0.00 2.34
201 202 5.486063 TGGCTAGAACCAAACACCTATCTAA 59.514 40.000 0.00 0.00 36.55 2.10
202 203 5.027460 TGGCTAGAACCAAACACCTATCTA 58.973 41.667 0.00 0.00 36.55 1.98
203 204 3.844211 TGGCTAGAACCAAACACCTATCT 59.156 43.478 0.00 0.00 36.55 1.98
204 205 3.939592 GTGGCTAGAACCAAACACCTATC 59.060 47.826 0.00 0.00 42.70 2.08
205 206 3.329520 TGTGGCTAGAACCAAACACCTAT 59.670 43.478 0.00 0.00 42.70 2.57
206 207 2.706723 TGTGGCTAGAACCAAACACCTA 59.293 45.455 0.00 0.00 42.70 3.08
207 208 1.493022 TGTGGCTAGAACCAAACACCT 59.507 47.619 0.00 0.00 42.70 4.00
208 209 1.607148 GTGTGGCTAGAACCAAACACC 59.393 52.381 5.14 0.00 45.87 4.16
211 212 2.271944 AGGTGTGGCTAGAACCAAAC 57.728 50.000 0.00 0.00 45.86 2.93
212 213 3.244770 CCTTAGGTGTGGCTAGAACCAAA 60.245 47.826 0.00 0.00 42.70 3.28
213 214 2.304761 CCTTAGGTGTGGCTAGAACCAA 59.695 50.000 0.00 0.00 42.70 3.67
214 215 1.906574 CCTTAGGTGTGGCTAGAACCA 59.093 52.381 0.00 0.00 36.37 3.67
215 216 1.407025 GCCTTAGGTGTGGCTAGAACC 60.407 57.143 0.00 0.00 45.26 3.62
216 217 2.025589 GCCTTAGGTGTGGCTAGAAC 57.974 55.000 0.00 0.00 45.26 3.01
223 224 4.871933 AAAATTCTTGCCTTAGGTGTGG 57.128 40.909 0.00 0.00 0.00 4.17
243 244 4.590647 TGTGGGGTTCATTGCTCATAAAAA 59.409 37.500 0.00 0.00 0.00 1.94
244 245 4.155709 TGTGGGGTTCATTGCTCATAAAA 58.844 39.130 0.00 0.00 0.00 1.52
245 246 3.772387 TGTGGGGTTCATTGCTCATAAA 58.228 40.909 0.00 0.00 0.00 1.40
246 247 3.448093 TGTGGGGTTCATTGCTCATAA 57.552 42.857 0.00 0.00 0.00 1.90
247 248 3.289836 CATGTGGGGTTCATTGCTCATA 58.710 45.455 0.00 0.00 0.00 2.15
248 249 2.104967 CATGTGGGGTTCATTGCTCAT 58.895 47.619 0.00 0.00 0.00 2.90
249 250 1.203038 ACATGTGGGGTTCATTGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
250 251 1.474077 GACATGTGGGGTTCATTGCTC 59.526 52.381 1.15 0.00 0.00 4.26
251 252 1.203038 TGACATGTGGGGTTCATTGCT 60.203 47.619 1.15 0.00 0.00 3.91
252 253 1.255882 TGACATGTGGGGTTCATTGC 58.744 50.000 1.15 0.00 0.00 3.56
253 254 4.336433 GTCTATGACATGTGGGGTTCATTG 59.664 45.833 1.15 0.48 32.09 2.82
254 255 4.018506 TGTCTATGACATGTGGGGTTCATT 60.019 41.667 1.15 0.00 37.67 2.57
255 256 3.523157 TGTCTATGACATGTGGGGTTCAT 59.477 43.478 1.15 1.46 37.67 2.57
256 257 2.909662 TGTCTATGACATGTGGGGTTCA 59.090 45.455 1.15 0.00 37.67 3.18
257 258 3.627395 TGTCTATGACATGTGGGGTTC 57.373 47.619 1.15 0.00 37.67 3.62
267 268 8.669946 TTGTCACACTTTTTATGTCTATGACA 57.330 30.769 2.77 2.77 46.90 3.58
268 269 8.988934 TCTTGTCACACTTTTTATGTCTATGAC 58.011 33.333 0.00 0.00 0.00 3.06
269 270 9.725019 ATCTTGTCACACTTTTTATGTCTATGA 57.275 29.630 0.00 0.00 0.00 2.15
272 273 9.554395 TGAATCTTGTCACACTTTTTATGTCTA 57.446 29.630 0.00 0.00 0.00 2.59
273 274 8.345565 GTGAATCTTGTCACACTTTTTATGTCT 58.654 33.333 0.55 0.00 46.00 3.41
274 275 8.494236 GTGAATCTTGTCACACTTTTTATGTC 57.506 34.615 0.55 0.00 46.00 3.06
286 287 4.378874 GCTTGCCTAAGTGAATCTTGTCAC 60.379 45.833 0.00 0.00 46.90 3.67
287 288 3.753272 GCTTGCCTAAGTGAATCTTGTCA 59.247 43.478 0.00 0.00 37.56 3.58
288 289 3.127721 GGCTTGCCTAAGTGAATCTTGTC 59.872 47.826 4.11 0.00 37.56 3.18
289 290 3.084786 GGCTTGCCTAAGTGAATCTTGT 58.915 45.455 4.11 0.00 37.56 3.16
290 291 3.084039 TGGCTTGCCTAAGTGAATCTTG 58.916 45.455 13.18 0.00 37.56 3.02
291 292 3.439857 TGGCTTGCCTAAGTGAATCTT 57.560 42.857 13.18 0.00 39.89 2.40
292 293 3.439857 TTGGCTTGCCTAAGTGAATCT 57.560 42.857 13.18 0.00 36.27 2.40
293 294 3.507622 ACTTTGGCTTGCCTAAGTGAATC 59.492 43.478 30.01 0.00 35.27 2.52
294 295 3.500343 ACTTTGGCTTGCCTAAGTGAAT 58.500 40.909 30.01 13.34 35.27 2.57
295 296 2.944129 ACTTTGGCTTGCCTAAGTGAA 58.056 42.857 30.01 7.95 35.27 3.18
296 297 2.656947 ACTTTGGCTTGCCTAAGTGA 57.343 45.000 30.01 2.28 35.27 3.41
297 298 2.712057 CACTTTGGCTTGCCTAAGTG 57.288 50.000 35.13 35.13 42.97 3.16
298 299 1.956477 CACACTTTGGCTTGCCTAAGT 59.044 47.619 26.98 26.98 36.52 2.24
299 300 1.270550 CCACACTTTGGCTTGCCTAAG 59.729 52.381 25.92 25.92 39.07 2.18
300 301 1.327303 CCACACTTTGGCTTGCCTAA 58.673 50.000 13.18 10.47 39.07 2.69
301 302 3.034924 CCACACTTTGGCTTGCCTA 57.965 52.632 13.18 2.12 39.07 3.93
302 303 3.860681 CCACACTTTGGCTTGCCT 58.139 55.556 13.18 0.00 39.07 4.75
310 311 6.389091 TGCTCAAATTATTAGCCACACTTTG 58.611 36.000 4.66 0.00 35.33 2.77
311 312 6.588719 TGCTCAAATTATTAGCCACACTTT 57.411 33.333 4.66 0.00 35.33 2.66
312 313 6.209391 AGTTGCTCAAATTATTAGCCACACTT 59.791 34.615 11.13 0.00 35.09 3.16
313 314 5.711976 AGTTGCTCAAATTATTAGCCACACT 59.288 36.000 11.13 5.89 35.09 3.55
314 315 5.954335 AGTTGCTCAAATTATTAGCCACAC 58.046 37.500 11.13 4.34 35.09 3.82
315 316 5.709631 TGAGTTGCTCAAATTATTAGCCACA 59.290 36.000 11.13 0.00 37.57 4.17
316 317 6.194796 TGAGTTGCTCAAATTATTAGCCAC 57.805 37.500 0.00 4.22 37.57 5.01
317 318 6.832520 TTGAGTTGCTCAAATTATTAGCCA 57.167 33.333 8.89 0.00 45.84 4.75
328 329 4.584325 ACTTGCCTTATTTGAGTTGCTCAA 59.416 37.500 7.41 7.41 46.93 3.02
329 330 4.022935 CACTTGCCTTATTTGAGTTGCTCA 60.023 41.667 0.00 0.00 38.87 4.26
330 331 4.022849 ACACTTGCCTTATTTGAGTTGCTC 60.023 41.667 0.00 0.00 0.00 4.26
331 332 3.891366 ACACTTGCCTTATTTGAGTTGCT 59.109 39.130 0.00 0.00 0.00 3.91
332 333 3.983344 CACACTTGCCTTATTTGAGTTGC 59.017 43.478 0.00 0.00 0.00 4.17
333 334 4.549458 CCACACTTGCCTTATTTGAGTTG 58.451 43.478 0.00 0.00 0.00 3.16
334 335 3.005791 GCCACACTTGCCTTATTTGAGTT 59.994 43.478 0.00 0.00 0.00 3.01
335 336 2.558359 GCCACACTTGCCTTATTTGAGT 59.442 45.455 0.00 0.00 0.00 3.41
336 337 2.821969 AGCCACACTTGCCTTATTTGAG 59.178 45.455 0.00 0.00 0.00 3.02
337 338 2.875296 AGCCACACTTGCCTTATTTGA 58.125 42.857 0.00 0.00 0.00 2.69
338 339 4.782019 TTAGCCACACTTGCCTTATTTG 57.218 40.909 0.00 0.00 0.00 2.32
339 340 5.799827 TTTTAGCCACACTTGCCTTATTT 57.200 34.783 0.00 0.00 0.00 1.40
340 341 5.480073 TGATTTTAGCCACACTTGCCTTATT 59.520 36.000 0.00 0.00 0.00 1.40
341 342 5.016173 TGATTTTAGCCACACTTGCCTTAT 58.984 37.500 0.00 0.00 0.00 1.73
342 343 4.402829 TGATTTTAGCCACACTTGCCTTA 58.597 39.130 0.00 0.00 0.00 2.69
343 344 3.230134 TGATTTTAGCCACACTTGCCTT 58.770 40.909 0.00 0.00 0.00 4.35
344 345 2.875296 TGATTTTAGCCACACTTGCCT 58.125 42.857 0.00 0.00 0.00 4.75
345 346 3.056607 ACATGATTTTAGCCACACTTGCC 60.057 43.478 0.00 0.00 0.00 4.52
346 347 3.922240 CACATGATTTTAGCCACACTTGC 59.078 43.478 0.00 0.00 0.00 4.01
347 348 4.487948 CCACATGATTTTAGCCACACTTG 58.512 43.478 0.00 0.00 0.00 3.16
348 349 3.056607 GCCACATGATTTTAGCCACACTT 60.057 43.478 0.00 0.00 0.00 3.16
349 350 2.493278 GCCACATGATTTTAGCCACACT 59.507 45.455 0.00 0.00 0.00 3.55
350 351 2.230992 TGCCACATGATTTTAGCCACAC 59.769 45.455 0.00 0.00 0.00 3.82
351 352 2.523245 TGCCACATGATTTTAGCCACA 58.477 42.857 0.00 0.00 0.00 4.17
352 353 3.253230 GTTGCCACATGATTTTAGCCAC 58.747 45.455 0.00 0.00 0.00 5.01
353 354 2.896044 TGTTGCCACATGATTTTAGCCA 59.104 40.909 0.00 0.00 0.00 4.75
354 355 3.591196 TGTTGCCACATGATTTTAGCC 57.409 42.857 0.00 0.00 0.00 3.93
355 356 5.693104 CCATATGTTGCCACATGATTTTAGC 59.307 40.000 13.44 0.00 43.92 3.09
356 357 5.693104 GCCATATGTTGCCACATGATTTTAG 59.307 40.000 13.44 0.00 43.92 1.85
357 358 5.128335 TGCCATATGTTGCCACATGATTTTA 59.872 36.000 13.44 0.00 43.92 1.52
358 359 4.081031 TGCCATATGTTGCCACATGATTTT 60.081 37.500 13.44 0.00 43.92 1.82
359 360 3.451540 TGCCATATGTTGCCACATGATTT 59.548 39.130 13.44 0.00 43.92 2.17
360 361 3.032459 TGCCATATGTTGCCACATGATT 58.968 40.909 13.44 0.00 43.92 2.57
361 362 2.668625 TGCCATATGTTGCCACATGAT 58.331 42.857 13.44 1.28 43.92 2.45
362 363 2.140839 TGCCATATGTTGCCACATGA 57.859 45.000 13.44 0.00 43.92 3.07
363 364 2.963548 TTGCCATATGTTGCCACATG 57.036 45.000 13.44 0.00 43.92 3.21
364 365 3.098377 TCTTTGCCATATGTTGCCACAT 58.902 40.909 8.64 8.64 46.07 3.21
365 366 2.523245 TCTTTGCCATATGTTGCCACA 58.477 42.857 1.24 0.00 37.31 4.17
366 367 3.806625 ATCTTTGCCATATGTTGCCAC 57.193 42.857 1.24 0.00 0.00 5.01
367 368 4.535781 AGTATCTTTGCCATATGTTGCCA 58.464 39.130 1.24 0.00 0.00 4.92
368 369 4.580167 TGAGTATCTTTGCCATATGTTGCC 59.420 41.667 1.24 0.00 34.92 4.52
369 370 5.066375 TGTGAGTATCTTTGCCATATGTTGC 59.934 40.000 1.24 0.00 34.92 4.17
370 371 6.682423 TGTGAGTATCTTTGCCATATGTTG 57.318 37.500 1.24 0.00 34.92 3.33
371 372 7.013655 GGATTGTGAGTATCTTTGCCATATGTT 59.986 37.037 1.24 0.00 34.92 2.71
372 373 6.488006 GGATTGTGAGTATCTTTGCCATATGT 59.512 38.462 1.24 0.00 34.92 2.29
373 374 6.487668 TGGATTGTGAGTATCTTTGCCATATG 59.512 38.462 0.00 0.00 34.92 1.78
374 375 6.604171 TGGATTGTGAGTATCTTTGCCATAT 58.396 36.000 0.00 0.00 34.92 1.78
375 376 6.000246 TGGATTGTGAGTATCTTTGCCATA 58.000 37.500 0.00 0.00 34.92 2.74
376 377 4.858850 TGGATTGTGAGTATCTTTGCCAT 58.141 39.130 0.00 0.00 34.92 4.40
377 378 4.299586 TGGATTGTGAGTATCTTTGCCA 57.700 40.909 0.00 0.00 34.92 4.92
378 379 5.048083 TGTTTGGATTGTGAGTATCTTTGCC 60.048 40.000 0.00 0.00 34.92 4.52
379 380 6.012658 TGTTTGGATTGTGAGTATCTTTGC 57.987 37.500 0.00 0.00 34.92 3.68
380 381 6.088824 GCTGTTTGGATTGTGAGTATCTTTG 58.911 40.000 0.00 0.00 34.92 2.77
381 382 5.183904 GGCTGTTTGGATTGTGAGTATCTTT 59.816 40.000 0.00 0.00 34.92 2.52
382 383 4.702131 GGCTGTTTGGATTGTGAGTATCTT 59.298 41.667 0.00 0.00 34.92 2.40
383 384 4.265073 GGCTGTTTGGATTGTGAGTATCT 58.735 43.478 0.00 0.00 34.92 1.98
384 385 3.378427 GGGCTGTTTGGATTGTGAGTATC 59.622 47.826 0.00 0.00 0.00 2.24
385 386 3.356290 GGGCTGTTTGGATTGTGAGTAT 58.644 45.455 0.00 0.00 0.00 2.12
386 387 2.554344 GGGGCTGTTTGGATTGTGAGTA 60.554 50.000 0.00 0.00 0.00 2.59
387 388 1.620822 GGGCTGTTTGGATTGTGAGT 58.379 50.000 0.00 0.00 0.00 3.41
388 389 0.890683 GGGGCTGTTTGGATTGTGAG 59.109 55.000 0.00 0.00 0.00 3.51
389 390 0.482446 AGGGGCTGTTTGGATTGTGA 59.518 50.000 0.00 0.00 0.00 3.58
390 391 1.001181 CAAGGGGCTGTTTGGATTGTG 59.999 52.381 0.00 0.00 0.00 3.33
391 392 1.341080 CAAGGGGCTGTTTGGATTGT 58.659 50.000 0.00 0.00 0.00 2.71
392 393 0.609662 CCAAGGGGCTGTTTGGATTG 59.390 55.000 8.78 0.00 45.32 2.67
393 394 3.071671 CCAAGGGGCTGTTTGGATT 57.928 52.632 8.78 0.00 45.32 3.01
394 395 4.872293 CCAAGGGGCTGTTTGGAT 57.128 55.556 8.78 0.00 45.32 3.41
404 405 4.830765 TTCGATCGCGCCAAGGGG 62.831 66.667 11.09 0.00 37.46 4.79
405 406 2.978452 ATCTTCGATCGCGCCAAGGG 62.978 60.000 11.09 0.00 37.46 3.95
406 407 1.552348 GATCTTCGATCGCGCCAAGG 61.552 60.000 11.09 0.00 37.46 3.61
407 408 0.596083 AGATCTTCGATCGCGCCAAG 60.596 55.000 11.09 9.08 37.46 3.61
436 437 3.446442 AGGGTCTGGAACGTTCTAGTA 57.554 47.619 32.44 20.46 37.13 1.82
437 438 2.305858 AGGGTCTGGAACGTTCTAGT 57.694 50.000 32.44 16.71 37.13 2.57
489 493 2.166459 CTGACTCTAGAATTGGACGGCA 59.834 50.000 0.00 0.00 0.00 5.69
710 745 2.793933 CGTTCTTGACGTGACGGATAT 58.206 47.619 10.66 0.00 46.49 1.63
742 778 2.717044 ATGCGGACCAATCGACGGA 61.717 57.895 9.64 0.00 0.00 4.69
743 779 2.202878 ATGCGGACCAATCGACGG 60.203 61.111 1.12 1.12 0.00 4.79
744 780 3.005898 CATGCGGACCAATCGACG 58.994 61.111 0.00 0.00 0.00 5.12
745 781 2.709475 GCATGCGGACCAATCGAC 59.291 61.111 0.00 0.00 0.00 4.20
746 782 2.889988 CGCATGCGGACCAATCGA 60.890 61.111 31.99 0.00 35.56 3.59
747 783 4.596180 GCGCATGCGGACCAATCG 62.596 66.667 38.22 10.57 40.19 3.34
748 784 4.256090 GGCGCATGCGGACCAATC 62.256 66.667 38.22 20.94 44.10 2.67
775 823 4.278513 CAAGTTGGTGGGGGCCGA 62.279 66.667 0.00 0.00 0.00 5.54
841 897 1.600916 GGTTGTGTGGGCAGGAGAC 60.601 63.158 0.00 0.00 0.00 3.36
887 945 3.673343 AGGAGGAAGAATGGATGGATGA 58.327 45.455 0.00 0.00 0.00 2.92
924 1220 1.599542 GTGCTGTTGGTCTGTGAGAAC 59.400 52.381 0.00 0.00 31.00 3.01
927 1223 1.331756 GTTGTGCTGTTGGTCTGTGAG 59.668 52.381 0.00 0.00 0.00 3.51
958 3165 2.452813 CCTCGCGTGTGGAATTCGG 61.453 63.158 11.62 0.00 0.00 4.30
976 7278 5.466728 TGGATTCGCTGCTTATCTGAATAAC 59.533 40.000 0.00 0.00 29.93 1.89
1636 11883 9.680315 TTATCGGTTAACAAAACTAACCAAATG 57.320 29.630 8.10 0.00 45.88 2.32
1872 12127 9.336171 AGCTTTTATGGCAGAATTTTACAAAAA 57.664 25.926 0.00 0.00 0.00 1.94
1873 12128 8.900983 AGCTTTTATGGCAGAATTTTACAAAA 57.099 26.923 0.00 0.00 0.00 2.44
2197 12536 2.476619 CGCTTTCTTGTGTGGTGAGTAG 59.523 50.000 0.00 0.00 0.00 2.57
2210 14930 2.489938 TTAGCCATGTCCGCTTTCTT 57.510 45.000 0.09 0.00 37.79 2.52
2218 14938 5.945784 TCATGCCTTATATTTAGCCATGTCC 59.054 40.000 7.78 0.00 0.00 4.02
2494 15221 8.568732 TTCAAAAGTACGGATTTCAAATGTTC 57.431 30.769 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.