Multiple sequence alignment - TraesCS5D01G490800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G490800 chr5D 100.000 1961 0 0 626 2586 525217003 525215043 0.000000e+00 3622.0
1 TraesCS5D01G490800 chr5D 86.957 575 47 10 1136 1686 525226908 525226338 2.830000e-174 621.0
2 TraesCS5D01G490800 chr5D 79.451 910 109 34 855 1722 525189381 525188508 8.030000e-160 573.0
3 TraesCS5D01G490800 chr5D 100.000 135 0 0 1 135 525217628 525217494 1.540000e-62 250.0
4 TraesCS5D01G490800 chr5A 89.841 817 56 12 917 1709 651564594 651563781 0.000000e+00 1024.0
5 TraesCS5D01G490800 chr5A 90.416 553 44 4 1768 2313 651563787 651563237 0.000000e+00 719.0
6 TraesCS5D01G490800 chr5A 85.127 632 69 15 1136 1760 651569682 651569069 7.860000e-175 623.0
7 TraesCS5D01G490800 chr5A 81.910 597 70 18 1141 1712 651555968 651555385 1.080000e-128 470.0
8 TraesCS5D01G490800 chr5A 78.628 379 48 16 1179 1542 651755107 651755467 1.200000e-53 220.0
9 TraesCS5D01G490800 chr5A 88.136 118 5 3 666 783 651565302 651565194 5.810000e-27 132.0
10 TraesCS5D01G490800 chr5A 94.872 39 2 0 851 889 651565038 651565000 7.730000e-06 62.1
11 TraesCS5D01G490800 chr5B 85.714 784 76 20 1136 1900 659586815 659586049 0.000000e+00 795.0
12 TraesCS5D01G490800 chr5B 82.963 675 51 20 628 1274 659561175 659560537 3.760000e-153 551.0
13 TraesCS5D01G490800 chr5B 83.835 532 54 11 1045 1562 659557636 659557123 6.470000e-131 477.0
14 TraesCS5D01G490800 chr5B 80.896 335 44 14 1179 1507 659635815 659636135 1.990000e-61 246.0
15 TraesCS5D01G490800 chr5B 80.838 334 43 14 1175 1507 659679437 659679750 2.570000e-60 243.0
16 TraesCS5D01G490800 chr5B 74.257 303 34 25 734 995 659587242 659586943 1.270000e-13 87.9
17 TraesCS5D01G490800 chr6B 89.773 88 5 3 1975 2059 437482930 437483016 2.720000e-20 110.0
18 TraesCS5D01G490800 chr2D 92.958 71 2 2 1984 2051 566557910 566557840 1.640000e-17 100.0
19 TraesCS5D01G490800 chr2D 86.420 81 6 3 1983 2059 543181702 543181623 1.650000e-12 84.2
20 TraesCS5D01G490800 chr6D 86.458 96 6 4 1960 2053 453809347 453809437 5.890000e-17 99.0
21 TraesCS5D01G490800 chr6D 90.385 52 5 0 2341 2392 431044791 431044842 4.620000e-08 69.4
22 TraesCS5D01G490800 chr3B 87.342 79 6 3 1974 2048 727790669 727790747 1.270000e-13 87.9
23 TraesCS5D01G490800 chr3B 88.732 71 4 3 1984 2051 156646746 156646815 1.650000e-12 84.2
24 TraesCS5D01G490800 chr3B 87.500 72 9 0 2340 2411 770358627 770358698 1.650000e-12 84.2
25 TraesCS5D01G490800 chr4A 84.810 79 5 2 1980 2051 743374382 743374460 3.570000e-09 73.1
26 TraesCS5D01G490800 chr1B 84.507 71 9 1 1983 2051 77278524 77278594 4.620000e-08 69.4
27 TraesCS5D01G490800 chr7D 100.000 28 0 0 2339 2366 3890119 3890146 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G490800 chr5D 525215043 525217628 2585 True 1936.00 3622 100.0000 1 2586 2 chr5D.!!$R3 2585
1 TraesCS5D01G490800 chr5D 525226338 525226908 570 True 621.00 621 86.9570 1136 1686 1 chr5D.!!$R2 550
2 TraesCS5D01G490800 chr5D 525188508 525189381 873 True 573.00 573 79.4510 855 1722 1 chr5D.!!$R1 867
3 TraesCS5D01G490800 chr5A 651563237 651569682 6445 True 512.02 1024 89.6784 666 2313 5 chr5A.!!$R2 1647
4 TraesCS5D01G490800 chr5A 651555385 651555968 583 True 470.00 470 81.9100 1141 1712 1 chr5A.!!$R1 571
5 TraesCS5D01G490800 chr5B 659557123 659561175 4052 True 514.00 551 83.3990 628 1562 2 chr5B.!!$R1 934
6 TraesCS5D01G490800 chr5B 659586049 659587242 1193 True 441.45 795 79.9855 734 1900 2 chr5B.!!$R2 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 703 0.251653 TCCTGTGGGCTTCGTCTAGT 60.252 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2464 11070 0.032403 CCTAAACACCACCACGACGA 59.968 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.927281 TTAAGTAGTAAGCCGAATCTGGT 57.073 39.130 0.00 0.00 0.00 4.00
24 25 5.927281 AAGTAGTAAGCCGAATCTGGTAA 57.073 39.130 0.00 0.00 0.00 2.85
25 26 5.517322 AGTAGTAAGCCGAATCTGGTAAG 57.483 43.478 0.00 0.00 0.00 2.34
26 27 3.180891 AGTAAGCCGAATCTGGTAAGC 57.819 47.619 0.00 0.00 0.00 3.09
27 28 2.766828 AGTAAGCCGAATCTGGTAAGCT 59.233 45.455 0.00 0.00 0.00 3.74
28 29 2.789409 AAGCCGAATCTGGTAAGCTT 57.211 45.000 3.48 3.48 35.82 3.74
29 30 2.029838 AGCCGAATCTGGTAAGCTTG 57.970 50.000 9.86 0.00 0.00 4.01
30 31 1.279271 AGCCGAATCTGGTAAGCTTGT 59.721 47.619 9.86 0.00 0.00 3.16
31 32 2.500098 AGCCGAATCTGGTAAGCTTGTA 59.500 45.455 9.86 0.00 0.00 2.41
32 33 2.608090 GCCGAATCTGGTAAGCTTGTAC 59.392 50.000 9.86 0.00 0.00 2.90
33 34 3.195661 CCGAATCTGGTAAGCTTGTACC 58.804 50.000 9.86 10.50 43.45 3.34
34 35 2.858344 CGAATCTGGTAAGCTTGTACCG 59.142 50.000 9.86 6.57 45.72 4.02
35 36 3.675228 CGAATCTGGTAAGCTTGTACCGT 60.675 47.826 9.86 0.00 45.72 4.83
36 37 3.975168 ATCTGGTAAGCTTGTACCGTT 57.025 42.857 9.86 0.00 45.72 4.44
37 38 3.756933 TCTGGTAAGCTTGTACCGTTT 57.243 42.857 9.86 0.00 45.72 3.60
38 39 3.395639 TCTGGTAAGCTTGTACCGTTTG 58.604 45.455 9.86 2.25 45.72 2.93
39 40 3.135994 CTGGTAAGCTTGTACCGTTTGT 58.864 45.455 9.86 0.00 45.72 2.83
40 41 3.543665 TGGTAAGCTTGTACCGTTTGTT 58.456 40.909 9.86 0.00 45.72 2.83
41 42 3.946558 TGGTAAGCTTGTACCGTTTGTTT 59.053 39.130 9.86 0.00 45.72 2.83
42 43 4.201930 TGGTAAGCTTGTACCGTTTGTTTG 60.202 41.667 9.86 0.00 45.72 2.93
43 44 4.201940 GGTAAGCTTGTACCGTTTGTTTGT 60.202 41.667 9.86 0.00 34.50 2.83
44 45 3.685836 AGCTTGTACCGTTTGTTTGTC 57.314 42.857 0.00 0.00 0.00 3.18
45 46 3.275999 AGCTTGTACCGTTTGTTTGTCT 58.724 40.909 0.00 0.00 0.00 3.41
46 47 3.311596 AGCTTGTACCGTTTGTTTGTCTC 59.688 43.478 0.00 0.00 0.00 3.36
47 48 3.843510 GCTTGTACCGTTTGTTTGTCTCG 60.844 47.826 0.00 0.00 0.00 4.04
48 49 3.162202 TGTACCGTTTGTTTGTCTCGA 57.838 42.857 0.00 0.00 0.00 4.04
49 50 2.859538 TGTACCGTTTGTTTGTCTCGAC 59.140 45.455 0.00 0.00 0.00 4.20
50 51 2.304751 ACCGTTTGTTTGTCTCGACT 57.695 45.000 0.00 0.00 0.00 4.18
51 52 2.199236 ACCGTTTGTTTGTCTCGACTC 58.801 47.619 0.00 0.00 0.00 3.36
52 53 1.189446 CCGTTTGTTTGTCTCGACTCG 59.811 52.381 0.00 0.00 0.00 4.18
53 54 2.114056 CGTTTGTTTGTCTCGACTCGA 58.886 47.619 0.29 0.29 0.00 4.04
54 55 2.724690 CGTTTGTTTGTCTCGACTCGAT 59.275 45.455 0.62 0.00 34.61 3.59
55 56 3.910170 CGTTTGTTTGTCTCGACTCGATA 59.090 43.478 0.62 0.00 34.61 2.92
56 57 4.029198 CGTTTGTTTGTCTCGACTCGATAG 59.971 45.833 0.62 0.00 34.61 2.08
75 76 7.106890 TCGATAGATAGATCTAGTCTGGTTGG 58.893 42.308 17.82 9.12 42.20 3.77
76 77 6.183360 CGATAGATAGATCTAGTCTGGTTGGC 60.183 46.154 17.82 0.00 42.20 4.52
77 78 3.823873 AGATAGATCTAGTCTGGTTGGCG 59.176 47.826 8.70 0.00 37.83 5.69
78 79 2.145397 AGATCTAGTCTGGTTGGCGA 57.855 50.000 0.00 0.00 35.31 5.54
79 80 2.457598 AGATCTAGTCTGGTTGGCGAA 58.542 47.619 0.00 0.00 35.31 4.70
80 81 2.428890 AGATCTAGTCTGGTTGGCGAAG 59.571 50.000 0.00 0.00 35.31 3.79
81 82 5.298265 AGATCTAGTCTGGTTGGCGAAGC 62.298 52.174 3.45 3.45 45.69 3.86
97 98 3.732943 CGAAGCGCTTTTTATTCTTCGT 58.267 40.909 25.84 0.00 46.20 3.85
98 99 3.534516 CGAAGCGCTTTTTATTCTTCGTG 59.465 43.478 25.84 0.00 46.20 4.35
99 100 4.665645 CGAAGCGCTTTTTATTCTTCGTGA 60.666 41.667 25.84 0.00 46.20 4.35
100 101 4.742438 AGCGCTTTTTATTCTTCGTGAA 57.258 36.364 2.64 0.00 39.24 3.18
101 102 4.464112 AGCGCTTTTTATTCTTCGTGAAC 58.536 39.130 2.64 0.00 37.52 3.18
102 103 4.024387 AGCGCTTTTTATTCTTCGTGAACA 60.024 37.500 2.64 0.00 37.52 3.18
103 104 4.673311 GCGCTTTTTATTCTTCGTGAACAA 59.327 37.500 0.00 0.00 37.52 2.83
104 105 5.164282 GCGCTTTTTATTCTTCGTGAACAAG 60.164 40.000 0.00 0.00 37.52 3.16
105 106 6.133392 CGCTTTTTATTCTTCGTGAACAAGA 58.867 36.000 0.00 0.00 37.52 3.02
106 107 6.085068 CGCTTTTTATTCTTCGTGAACAAGAC 59.915 38.462 0.00 0.00 37.52 3.01
107 108 7.132863 GCTTTTTATTCTTCGTGAACAAGACT 58.867 34.615 0.00 0.00 37.52 3.24
108 109 7.644157 GCTTTTTATTCTTCGTGAACAAGACTT 59.356 33.333 0.00 0.00 37.52 3.01
109 110 9.503427 CTTTTTATTCTTCGTGAACAAGACTTT 57.497 29.630 0.00 0.00 37.52 2.66
110 111 9.498307 TTTTTATTCTTCGTGAACAAGACTTTC 57.502 29.630 0.00 0.00 37.52 2.62
111 112 8.433421 TTTATTCTTCGTGAACAAGACTTTCT 57.567 30.769 0.00 0.00 37.52 2.52
112 113 5.968387 TTCTTCGTGAACAAGACTTTCTC 57.032 39.130 0.00 0.00 29.30 2.87
113 114 5.263968 TCTTCGTGAACAAGACTTTCTCT 57.736 39.130 0.00 0.00 0.00 3.10
114 115 5.282510 TCTTCGTGAACAAGACTTTCTCTC 58.717 41.667 0.00 0.00 0.00 3.20
115 116 4.920640 TCGTGAACAAGACTTTCTCTCT 57.079 40.909 0.00 0.00 0.00 3.10
116 117 5.263968 TCGTGAACAAGACTTTCTCTCTT 57.736 39.130 0.00 0.00 0.00 2.85
117 118 5.043903 TCGTGAACAAGACTTTCTCTCTTG 58.956 41.667 6.61 6.61 46.88 3.02
118 119 5.043903 CGTGAACAAGACTTTCTCTCTTGA 58.956 41.667 13.71 0.00 45.15 3.02
119 120 5.051374 CGTGAACAAGACTTTCTCTCTTGAC 60.051 44.000 13.71 8.41 45.15 3.18
120 121 6.045955 GTGAACAAGACTTTCTCTCTTGACT 58.954 40.000 13.71 2.30 45.15 3.41
121 122 6.200097 GTGAACAAGACTTTCTCTCTTGACTC 59.800 42.308 13.71 10.10 45.15 3.36
122 123 6.097554 TGAACAAGACTTTCTCTCTTGACTCT 59.902 38.462 13.71 0.00 45.15 3.24
123 124 6.478512 ACAAGACTTTCTCTCTTGACTCTT 57.521 37.500 13.71 0.00 45.15 2.85
124 125 6.279882 ACAAGACTTTCTCTCTTGACTCTTG 58.720 40.000 13.71 0.00 45.15 3.02
125 126 6.097554 ACAAGACTTTCTCTCTTGACTCTTGA 59.902 38.462 13.71 0.00 45.15 3.02
126 127 6.084326 AGACTTTCTCTCTTGACTCTTGAC 57.916 41.667 0.00 0.00 0.00 3.18
127 128 5.010617 AGACTTTCTCTCTTGACTCTTGACC 59.989 44.000 0.00 0.00 0.00 4.02
128 129 4.898861 ACTTTCTCTCTTGACTCTTGACCT 59.101 41.667 0.00 0.00 0.00 3.85
129 130 4.862902 TTCTCTCTTGACTCTTGACCTG 57.137 45.455 0.00 0.00 0.00 4.00
130 131 3.838565 TCTCTCTTGACTCTTGACCTGT 58.161 45.455 0.00 0.00 0.00 4.00
131 132 3.571828 TCTCTCTTGACTCTTGACCTGTG 59.428 47.826 0.00 0.00 0.00 3.66
132 133 3.566351 TCTCTTGACTCTTGACCTGTGA 58.434 45.455 0.00 0.00 0.00 3.58
133 134 4.155709 TCTCTTGACTCTTGACCTGTGAT 58.844 43.478 0.00 0.00 0.00 3.06
134 135 4.021632 TCTCTTGACTCTTGACCTGTGATG 60.022 45.833 0.00 0.00 0.00 3.07
657 658 3.971032 CAGTTGGTGGACACTTTCTTC 57.029 47.619 2.13 0.00 0.00 2.87
658 659 3.545703 CAGTTGGTGGACACTTTCTTCT 58.454 45.455 2.13 0.00 0.00 2.85
660 661 5.123227 CAGTTGGTGGACACTTTCTTCTTA 58.877 41.667 2.13 0.00 0.00 2.10
661 662 5.588648 CAGTTGGTGGACACTTTCTTCTTAA 59.411 40.000 2.13 0.00 0.00 1.85
664 665 7.996644 AGTTGGTGGACACTTTCTTCTTAATTA 59.003 33.333 2.13 0.00 0.00 1.40
685 686 2.963599 TAACTTTGGTGGACCCTTCC 57.036 50.000 0.00 0.00 43.19 3.46
699 700 1.674057 CTTCCTGTGGGCTTCGTCT 59.326 57.895 0.00 0.00 0.00 4.18
700 701 0.895530 CTTCCTGTGGGCTTCGTCTA 59.104 55.000 0.00 0.00 0.00 2.59
701 702 0.895530 TTCCTGTGGGCTTCGTCTAG 59.104 55.000 0.00 0.00 0.00 2.43
702 703 0.251653 TCCTGTGGGCTTCGTCTAGT 60.252 55.000 0.00 0.00 0.00 2.57
703 704 1.005097 TCCTGTGGGCTTCGTCTAGTA 59.995 52.381 0.00 0.00 0.00 1.82
704 705 2.032620 CCTGTGGGCTTCGTCTAGTAT 58.967 52.381 0.00 0.00 0.00 2.12
824 841 4.243008 TGCGCGTCCCAAAGGTCA 62.243 61.111 8.43 0.00 0.00 4.02
828 845 2.617274 GCGTCCCAAAGGTCACAGC 61.617 63.158 0.00 0.00 0.00 4.40
846 863 1.387295 GCTCCATACAAAGGCAGGCC 61.387 60.000 0.97 0.97 0.00 5.19
896 913 2.126580 GTCAACCCCGACGTCTCG 60.127 66.667 14.70 1.22 39.83 4.04
911 928 0.870393 TCTCGTACACGTGAGACCAC 59.130 55.000 25.01 10.28 36.36 4.16
1018 6354 1.474320 CCACAACTCAACAACCTCCGA 60.474 52.381 0.00 0.00 0.00 4.55
1027 6363 4.315803 TCAACAACCTCCGATTTCTTCTC 58.684 43.478 0.00 0.00 0.00 2.87
1041 6377 7.244192 CGATTTCTTCTCAAATCTAAACCCAC 58.756 38.462 4.80 0.00 39.64 4.61
1368 9923 3.997064 CTCAAGCTCGCCCTCACCG 62.997 68.421 0.00 0.00 0.00 4.94
1394 9949 1.000506 GGTCAGTGCTACTCCGTCAAA 59.999 52.381 0.00 0.00 0.00 2.69
1542 10112 1.067565 TGCTCGAGCTGTTTGTCTAGG 60.068 52.381 35.27 0.00 42.66 3.02
1567 10145 4.642437 TGATCTCAGTAGTTCTAGTGCAGG 59.358 45.833 9.14 3.96 0.00 4.85
1571 10149 3.258372 TCAGTAGTTCTAGTGCAGGGTTG 59.742 47.826 9.14 0.00 0.00 3.77
1580 10158 4.402851 GCAGGGTTGCTGACATGA 57.597 55.556 0.00 0.00 46.95 3.07
1581 10159 2.644887 GCAGGGTTGCTGACATGAA 58.355 52.632 0.00 0.00 46.95 2.57
1582 10160 1.180029 GCAGGGTTGCTGACATGAAT 58.820 50.000 0.00 0.00 46.95 2.57
1596 10174 4.211794 TGACATGAATATATGCGTGCACAG 59.788 41.667 18.64 10.86 0.00 3.66
1716 10310 7.410513 CGTTCGTTTATGTTGTTTCAACCAAAA 60.411 33.333 9.60 7.46 0.00 2.44
1717 10311 7.279470 TCGTTTATGTTGTTTCAACCAAAAC 57.721 32.000 18.74 18.74 39.16 2.43
1735 10334 6.828785 ACCAAAACTATTTCTCAGTTGACTGT 59.171 34.615 10.66 0.00 44.12 3.55
1736 10335 7.339466 ACCAAAACTATTTCTCAGTTGACTGTT 59.661 33.333 10.66 0.00 44.12 3.16
1749 10348 5.009010 CAGTTGACTGTTTCATAAACCAGCT 59.991 40.000 2.98 0.00 40.67 4.24
1762 10361 2.434843 CCAGCTCGGTCTATGCCCA 61.435 63.158 0.00 0.00 0.00 5.36
1763 10362 1.750930 CAGCTCGGTCTATGCCCAT 59.249 57.895 0.00 0.00 0.00 4.00
1766 10365 0.969894 GCTCGGTCTATGCCCATAGT 59.030 55.000 13.37 0.00 41.12 2.12
1773 10372 4.929808 CGGTCTATGCCCATAGTTTGTATC 59.070 45.833 13.37 0.00 41.12 2.24
1774 10373 4.929808 GGTCTATGCCCATAGTTTGTATCG 59.070 45.833 13.37 0.00 41.12 2.92
1818 10417 1.236616 TGCTGAAACGGGATGCAGTG 61.237 55.000 0.00 0.00 0.00 3.66
1840 10439 4.022935 TGTGAATGAATCTTGTTGGAGTGC 60.023 41.667 0.00 0.00 0.00 4.40
1855 10454 3.133542 TGGAGTGCTGTGGAATGATCTAG 59.866 47.826 0.00 0.00 0.00 2.43
1857 10456 4.383552 GGAGTGCTGTGGAATGATCTAGTT 60.384 45.833 0.00 0.00 0.00 2.24
1950 10549 3.596214 ACTGGCTTACATTAACGAGTGG 58.404 45.455 0.00 0.00 0.00 4.00
1952 10551 1.669265 GGCTTACATTAACGAGTGGCC 59.331 52.381 0.00 0.00 33.43 5.36
1971 10570 5.187381 GTGGCCTATAAATAGTACTCCCTCC 59.813 48.000 3.32 0.00 0.00 4.30
1981 10580 0.038744 TACTCCCTCCGTCCTTCGTT 59.961 55.000 0.00 0.00 37.94 3.85
2045 10647 3.293311 TCTTACGTTTTGAGACGGAGG 57.707 47.619 0.00 0.00 46.77 4.30
2046 10648 2.029649 TCTTACGTTTTGAGACGGAGGG 60.030 50.000 0.00 0.00 46.77 4.30
2055 10657 2.444421 TGAGACGGAGGGAGTAGTTTC 58.556 52.381 0.00 0.00 0.00 2.78
2058 10660 4.205587 GAGACGGAGGGAGTAGTTTCATA 58.794 47.826 0.00 0.00 0.00 2.15
2060 10662 2.694109 ACGGAGGGAGTAGTTTCATAGC 59.306 50.000 0.00 0.00 0.00 2.97
2062 10664 2.036089 GGAGGGAGTAGTTTCATAGCCG 59.964 54.545 0.00 0.00 0.00 5.52
2066 10668 4.281182 AGGGAGTAGTTTCATAGCCGTATG 59.719 45.833 0.00 0.00 37.92 2.39
2100 10702 9.594478 GGAAAACCATAATTTATTTTCGATGGT 57.406 29.630 0.00 0.00 47.00 3.55
2135 10737 1.421646 CCGGAAGCCTTATCTCCCATT 59.578 52.381 0.00 0.00 0.00 3.16
2143 10745 7.182206 GGAAGCCTTATCTCCCATTATACCTTA 59.818 40.741 0.00 0.00 0.00 2.69
2152 10754 3.440173 CCCATTATACCTTATTGCTGCCG 59.560 47.826 0.00 0.00 0.00 5.69
2157 10759 4.844349 ATACCTTATTGCTGCCGGATAT 57.156 40.909 5.05 0.00 0.00 1.63
2164 10766 2.024319 GCTGCCGGATATCGCAGTC 61.024 63.158 24.57 16.79 41.52 3.51
2187 10789 1.220749 CCGCCAGCTACCTTAAGCA 59.779 57.895 0.00 0.00 45.30 3.91
2208 10810 6.725364 AGCATAAGGGATCTTTTCTTGAAGA 58.275 36.000 0.00 0.00 39.76 2.87
2209 10811 6.827762 AGCATAAGGGATCTTTTCTTGAAGAG 59.172 38.462 0.00 0.00 38.90 2.85
2210 10812 6.039159 GCATAAGGGATCTTTTCTTGAAGAGG 59.961 42.308 0.00 0.00 38.90 3.69
2214 10816 7.135591 AGGGATCTTTTCTTGAAGAGGATAG 57.864 40.000 0.00 0.00 38.90 2.08
2262 10864 3.636231 CCTCCCACGTTGCTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
2264 10866 3.164977 TCCCACGTTGCTCCCACA 61.165 61.111 0.00 0.00 0.00 4.17
2283 10889 1.900545 AAGCGACTAGGAGGGCCAAC 61.901 60.000 6.18 0.00 36.29 3.77
2313 10919 4.304432 GAGGTCTCCCCATCCTCC 57.696 66.667 0.00 0.00 41.09 4.30
2314 10920 1.834822 GAGGTCTCCCCATCCTCCG 60.835 68.421 0.00 0.00 41.09 4.63
2315 10921 2.282446 GGTCTCCCCATCCTCCGA 59.718 66.667 0.00 0.00 0.00 4.55
2316 10922 1.152226 GGTCTCCCCATCCTCCGAT 60.152 63.158 0.00 0.00 0.00 4.18
2317 10923 1.188871 GGTCTCCCCATCCTCCGATC 61.189 65.000 0.00 0.00 0.00 3.69
2318 10924 1.156330 TCTCCCCATCCTCCGATCC 59.844 63.158 0.00 0.00 0.00 3.36
2319 10925 1.915769 CTCCCCATCCTCCGATCCC 60.916 68.421 0.00 0.00 0.00 3.85
2320 10926 2.930562 CCCCATCCTCCGATCCCC 60.931 72.222 0.00 0.00 0.00 4.81
2321 10927 2.930562 CCCATCCTCCGATCCCCC 60.931 72.222 0.00 0.00 0.00 5.40
2337 10943 2.507944 CCCCCTCTCGCCAGATTG 59.492 66.667 0.00 0.00 0.00 2.67
2338 10944 2.507944 CCCCTCTCGCCAGATTGG 59.492 66.667 0.00 0.00 41.55 3.16
2339 10945 2.370445 CCCCTCTCGCCAGATTGGT 61.370 63.158 0.00 0.00 40.46 3.67
2346 10952 3.443045 GCCAGATTGGTGGTGGCG 61.443 66.667 0.00 0.00 46.95 5.69
2347 10953 2.751436 CCAGATTGGTGGTGGCGG 60.751 66.667 0.00 0.00 31.35 6.13
2348 10954 2.034066 CAGATTGGTGGTGGCGGT 59.966 61.111 0.00 0.00 0.00 5.68
2349 10955 2.034066 AGATTGGTGGTGGCGGTG 59.966 61.111 0.00 0.00 0.00 4.94
2350 10956 3.061848 GATTGGTGGTGGCGGTGG 61.062 66.667 0.00 0.00 0.00 4.61
2351 10957 3.860930 GATTGGTGGTGGCGGTGGT 62.861 63.158 0.00 0.00 0.00 4.16
2352 10958 4.885270 TTGGTGGTGGCGGTGGTG 62.885 66.667 0.00 0.00 0.00 4.17
2358 10964 4.947147 GTGGCGGTGGTGGCTTCA 62.947 66.667 0.00 0.00 35.06 3.02
2359 10965 4.947147 TGGCGGTGGTGGCTTCAC 62.947 66.667 2.91 2.91 40.52 3.18
2368 10974 3.421567 GTGGCTTCACCTCTTGGTT 57.578 52.632 0.00 0.00 46.05 3.67
2369 10975 0.954452 GTGGCTTCACCTCTTGGTTG 59.046 55.000 0.00 0.00 46.05 3.77
2370 10976 0.550914 TGGCTTCACCTCTTGGTTGT 59.449 50.000 0.00 0.00 46.05 3.32
2371 10977 0.954452 GGCTTCACCTCTTGGTTGTG 59.046 55.000 0.00 0.00 46.05 3.33
2372 10978 1.476833 GGCTTCACCTCTTGGTTGTGA 60.477 52.381 0.00 0.00 46.05 3.58
2373 10979 1.876156 GCTTCACCTCTTGGTTGTGAG 59.124 52.381 0.00 0.00 46.05 3.51
2376 10982 4.404691 CCTCTTGGTTGTGAGGGC 57.595 61.111 0.00 0.00 44.44 5.19
2377 10983 1.672356 CCTCTTGGTTGTGAGGGCG 60.672 63.158 0.00 0.00 44.44 6.13
2378 10984 1.672356 CTCTTGGTTGTGAGGGCGG 60.672 63.158 0.00 0.00 0.00 6.13
2379 10985 3.365265 CTTGGTTGTGAGGGCGGC 61.365 66.667 0.00 0.00 0.00 6.53
2380 10986 4.196778 TTGGTTGTGAGGGCGGCA 62.197 61.111 12.47 0.00 0.00 5.69
2381 10987 3.723097 TTGGTTGTGAGGGCGGCAA 62.723 57.895 12.47 0.00 0.00 4.52
2382 10988 3.365265 GGTTGTGAGGGCGGCAAG 61.365 66.667 12.47 0.00 0.00 4.01
2383 10989 3.365265 GTTGTGAGGGCGGCAAGG 61.365 66.667 12.47 0.00 0.00 3.61
2384 10990 4.659172 TTGTGAGGGCGGCAAGGG 62.659 66.667 12.47 0.00 0.00 3.95
2390 10996 4.796495 GGGCGGCAAGGGGTGTAG 62.796 72.222 12.47 0.00 0.00 2.74
2391 10997 4.029809 GGCGGCAAGGGGTGTAGT 62.030 66.667 3.07 0.00 0.00 2.73
2392 10998 2.662070 GGCGGCAAGGGGTGTAGTA 61.662 63.158 3.07 0.00 0.00 1.82
2393 10999 1.153429 GCGGCAAGGGGTGTAGTAG 60.153 63.158 0.00 0.00 0.00 2.57
2394 11000 1.153429 CGGCAAGGGGTGTAGTAGC 60.153 63.158 0.00 0.00 0.00 3.58
2395 11001 1.153429 GGCAAGGGGTGTAGTAGCG 60.153 63.158 0.00 0.00 0.00 4.26
2396 11002 1.814169 GCAAGGGGTGTAGTAGCGC 60.814 63.158 0.00 0.00 39.76 5.92
2397 11003 1.518572 CAAGGGGTGTAGTAGCGCG 60.519 63.158 0.00 0.00 43.68 6.86
2398 11004 1.679977 AAGGGGTGTAGTAGCGCGA 60.680 57.895 12.10 0.00 43.68 5.87
2399 11005 1.664321 AAGGGGTGTAGTAGCGCGAG 61.664 60.000 12.10 0.00 43.68 5.03
2400 11006 2.412112 GGGTGTAGTAGCGCGAGG 59.588 66.667 12.10 0.00 0.00 4.63
2402 11008 1.509923 GGTGTAGTAGCGCGAGGTT 59.490 57.895 12.10 0.00 44.26 3.50
2403 11009 0.525029 GGTGTAGTAGCGCGAGGTTC 60.525 60.000 12.10 0.00 44.26 3.62
2404 11010 0.450983 GTGTAGTAGCGCGAGGTTCT 59.549 55.000 12.10 0.00 44.26 3.01
2405 11011 0.450583 TGTAGTAGCGCGAGGTTCTG 59.549 55.000 12.10 0.00 44.26 3.02
2406 11012 0.248539 GTAGTAGCGCGAGGTTCTGG 60.249 60.000 12.10 0.00 44.26 3.86
2407 11013 2.001361 TAGTAGCGCGAGGTTCTGGC 62.001 60.000 12.10 0.00 44.26 4.85
2408 11014 3.378602 TAGCGCGAGGTTCTGGCA 61.379 61.111 12.10 0.00 44.26 4.92
2409 11015 2.721167 TAGCGCGAGGTTCTGGCAT 61.721 57.895 12.10 0.00 44.26 4.40
2410 11016 2.906182 TAGCGCGAGGTTCTGGCATG 62.906 60.000 12.10 0.00 44.26 4.06
2411 11017 2.434884 CGCGAGGTTCTGGCATGT 60.435 61.111 0.00 0.00 34.94 3.21
2412 11018 2.456119 CGCGAGGTTCTGGCATGTC 61.456 63.158 0.00 0.00 34.94 3.06
2413 11019 2.456119 GCGAGGTTCTGGCATGTCG 61.456 63.158 0.00 0.00 35.33 4.35
2414 11020 1.079819 CGAGGTTCTGGCATGTCGT 60.080 57.895 0.00 0.00 0.00 4.34
2415 11021 1.078759 CGAGGTTCTGGCATGTCGTC 61.079 60.000 0.00 0.00 0.00 4.20
2416 11022 0.247736 GAGGTTCTGGCATGTCGTCT 59.752 55.000 0.00 0.00 0.00 4.18
2417 11023 0.687354 AGGTTCTGGCATGTCGTCTT 59.313 50.000 0.00 0.00 0.00 3.01
2418 11024 1.072331 AGGTTCTGGCATGTCGTCTTT 59.928 47.619 0.00 0.00 0.00 2.52
2419 11025 1.464997 GGTTCTGGCATGTCGTCTTTC 59.535 52.381 0.00 0.00 0.00 2.62
2420 11026 2.417719 GTTCTGGCATGTCGTCTTTCT 58.582 47.619 0.00 0.00 0.00 2.52
2421 11027 2.808543 GTTCTGGCATGTCGTCTTTCTT 59.191 45.455 0.00 0.00 0.00 2.52
2422 11028 2.688507 TCTGGCATGTCGTCTTTCTTC 58.311 47.619 0.00 0.00 0.00 2.87
2423 11029 2.037121 TCTGGCATGTCGTCTTTCTTCA 59.963 45.455 0.00 0.00 0.00 3.02
2424 11030 2.414481 CTGGCATGTCGTCTTTCTTCAG 59.586 50.000 0.00 0.00 0.00 3.02
2425 11031 2.037121 TGGCATGTCGTCTTTCTTCAGA 59.963 45.455 0.00 0.00 0.00 3.27
2426 11032 3.067106 GGCATGTCGTCTTTCTTCAGAA 58.933 45.455 0.00 0.00 0.00 3.02
2427 11033 3.124297 GGCATGTCGTCTTTCTTCAGAAG 59.876 47.826 3.45 3.45 35.21 2.85
2428 11034 3.743396 GCATGTCGTCTTTCTTCAGAAGT 59.257 43.478 10.09 0.00 35.21 3.01
2429 11035 4.376819 GCATGTCGTCTTTCTTCAGAAGTG 60.377 45.833 10.09 2.75 35.21 3.16
2430 11036 4.649088 TGTCGTCTTTCTTCAGAAGTGA 57.351 40.909 10.09 4.92 35.21 3.41
2431 11037 5.201713 TGTCGTCTTTCTTCAGAAGTGAT 57.798 39.130 10.09 0.00 35.21 3.06
2432 11038 4.984785 TGTCGTCTTTCTTCAGAAGTGATG 59.015 41.667 10.09 11.57 35.21 3.07
2433 11039 5.221244 TGTCGTCTTTCTTCAGAAGTGATGA 60.221 40.000 10.09 13.30 35.59 2.92
2434 11040 5.866633 GTCGTCTTTCTTCAGAAGTGATGAT 59.133 40.000 18.83 0.00 36.88 2.45
2435 11041 5.866092 TCGTCTTTCTTCAGAAGTGATGATG 59.134 40.000 10.09 11.87 36.88 3.07
2436 11042 5.445673 CGTCTTTCTTCAGAAGTGATGATGC 60.446 44.000 10.09 0.00 36.88 3.91
2437 11043 4.940046 TCTTTCTTCAGAAGTGATGATGCC 59.060 41.667 10.09 0.00 36.88 4.40
2438 11044 3.272574 TCTTCAGAAGTGATGATGCCC 57.727 47.619 10.09 0.00 33.14 5.36
2439 11045 2.573009 TCTTCAGAAGTGATGATGCCCA 59.427 45.455 10.09 0.00 33.14 5.36
2440 11046 2.704464 TCAGAAGTGATGATGCCCAG 57.296 50.000 0.00 0.00 0.00 4.45
2441 11047 2.190538 TCAGAAGTGATGATGCCCAGA 58.809 47.619 0.00 0.00 0.00 3.86
2442 11048 2.775960 TCAGAAGTGATGATGCCCAGAT 59.224 45.455 0.00 0.00 0.00 2.90
2443 11049 3.139850 CAGAAGTGATGATGCCCAGATC 58.860 50.000 0.00 0.00 0.00 2.75
2444 11050 3.047115 AGAAGTGATGATGCCCAGATCT 58.953 45.455 0.00 0.00 0.00 2.75
2445 11051 2.932855 AGTGATGATGCCCAGATCTG 57.067 50.000 16.24 16.24 0.00 2.90
2457 11063 1.137872 CCAGATCTGGTGTGACTAGGC 59.862 57.143 30.55 0.00 45.53 3.93
2458 11064 2.106566 CAGATCTGGTGTGACTAGGCT 58.893 52.381 15.38 0.00 0.00 4.58
2459 11065 3.291584 CAGATCTGGTGTGACTAGGCTA 58.708 50.000 15.38 0.00 0.00 3.93
2460 11066 3.317711 CAGATCTGGTGTGACTAGGCTAG 59.682 52.174 19.83 19.83 0.00 3.42
2461 11067 1.475403 TCTGGTGTGACTAGGCTAGC 58.525 55.000 21.26 6.04 0.00 3.42
2462 11068 0.461961 CTGGTGTGACTAGGCTAGCC 59.538 60.000 27.19 27.19 0.00 3.93
2464 11070 1.196012 GGTGTGACTAGGCTAGCCTT 58.804 55.000 40.02 24.68 45.70 4.35
2465 11071 1.137282 GGTGTGACTAGGCTAGCCTTC 59.863 57.143 40.02 30.82 45.70 3.46
2466 11072 1.103803 TGTGACTAGGCTAGCCTTCG 58.896 55.000 40.02 30.61 45.70 3.79
2467 11073 1.104630 GTGACTAGGCTAGCCTTCGT 58.895 55.000 40.02 33.33 45.70 3.85
2468 11074 1.065851 GTGACTAGGCTAGCCTTCGTC 59.934 57.143 40.02 37.31 45.70 4.20
2469 11075 0.308376 GACTAGGCTAGCCTTCGTCG 59.692 60.000 40.02 23.75 45.70 5.12
2470 11076 0.394080 ACTAGGCTAGCCTTCGTCGT 60.394 55.000 40.02 24.34 45.70 4.34
2471 11077 0.029567 CTAGGCTAGCCTTCGTCGTG 59.970 60.000 40.02 17.41 45.70 4.35
2472 11078 1.381928 TAGGCTAGCCTTCGTCGTGG 61.382 60.000 40.02 0.00 45.70 4.94
2473 11079 2.572284 GCTAGCCTTCGTCGTGGT 59.428 61.111 2.29 0.53 0.00 4.16
2474 11080 1.805945 GCTAGCCTTCGTCGTGGTG 60.806 63.158 2.29 2.55 0.00 4.17
2475 11081 1.153823 CTAGCCTTCGTCGTGGTGG 60.154 63.158 8.35 1.49 0.00 4.61
2476 11082 1.874345 CTAGCCTTCGTCGTGGTGGT 61.874 60.000 8.35 0.00 0.00 4.16
2477 11083 2.149803 TAGCCTTCGTCGTGGTGGTG 62.150 60.000 8.35 0.00 0.00 4.17
2478 11084 2.420043 CCTTCGTCGTGGTGGTGT 59.580 61.111 0.00 0.00 0.00 4.16
2479 11085 1.227438 CCTTCGTCGTGGTGGTGTT 60.227 57.895 0.00 0.00 0.00 3.32
2480 11086 0.812412 CCTTCGTCGTGGTGGTGTTT 60.812 55.000 0.00 0.00 0.00 2.83
2481 11087 1.538634 CCTTCGTCGTGGTGGTGTTTA 60.539 52.381 0.00 0.00 0.00 2.01
2482 11088 1.790623 CTTCGTCGTGGTGGTGTTTAG 59.209 52.381 0.00 0.00 0.00 1.85
2483 11089 0.032403 TCGTCGTGGTGGTGTTTAGG 59.968 55.000 0.00 0.00 0.00 2.69
2484 11090 0.032403 CGTCGTGGTGGTGTTTAGGA 59.968 55.000 0.00 0.00 0.00 2.94
2485 11091 1.337447 CGTCGTGGTGGTGTTTAGGAT 60.337 52.381 0.00 0.00 0.00 3.24
2486 11092 2.094597 CGTCGTGGTGGTGTTTAGGATA 60.095 50.000 0.00 0.00 0.00 2.59
2487 11093 3.256558 GTCGTGGTGGTGTTTAGGATAC 58.743 50.000 0.00 0.00 0.00 2.24
2488 11094 2.234414 TCGTGGTGGTGTTTAGGATACC 59.766 50.000 0.00 0.00 39.81 2.73
2489 11095 2.235402 CGTGGTGGTGTTTAGGATACCT 59.765 50.000 0.00 0.00 40.04 3.08
2490 11096 3.677976 CGTGGTGGTGTTTAGGATACCTC 60.678 52.174 0.00 0.00 40.04 3.85
2491 11097 3.555527 GGTGGTGTTTAGGATACCTCC 57.444 52.381 0.00 0.00 43.16 4.30
2503 11109 2.839098 ACCTCCTGGTGGTGCAAG 59.161 61.111 19.13 0.00 46.51 4.01
2504 11110 2.674380 CCTCCTGGTGGTGCAAGC 60.674 66.667 6.63 0.00 34.23 4.01
2505 11111 2.113774 CTCCTGGTGGTGCAAGCA 59.886 61.111 0.00 0.00 45.41 3.91
2513 11119 1.732917 TGGTGCAAGCAAGTTTCCG 59.267 52.632 0.00 0.00 44.10 4.30
2514 11120 0.749818 TGGTGCAAGCAAGTTTCCGA 60.750 50.000 0.00 0.00 44.10 4.55
2515 11121 0.040067 GGTGCAAGCAAGTTTCCGAG 60.040 55.000 0.00 0.00 0.00 4.63
2516 11122 0.040067 GTGCAAGCAAGTTTCCGAGG 60.040 55.000 0.00 0.00 0.00 4.63
2517 11123 1.172180 TGCAAGCAAGTTTCCGAGGG 61.172 55.000 0.00 0.00 0.00 4.30
2518 11124 0.889186 GCAAGCAAGTTTCCGAGGGA 60.889 55.000 0.00 0.00 0.00 4.20
2519 11125 1.604604 CAAGCAAGTTTCCGAGGGAA 58.395 50.000 0.00 0.00 40.27 3.97
2527 11133 0.958822 TTTCCGAGGGAAAGCTTTGC 59.041 50.000 21.33 21.33 45.42 3.68
2528 11134 0.179004 TTCCGAGGGAAAGCTTTGCA 60.179 50.000 28.71 8.20 38.93 4.08
2529 11135 0.889186 TCCGAGGGAAAGCTTTGCAC 60.889 55.000 28.71 20.61 0.00 4.57
2530 11136 0.890996 CCGAGGGAAAGCTTTGCACT 60.891 55.000 28.71 22.58 0.00 4.40
2531 11137 0.954452 CGAGGGAAAGCTTTGCACTT 59.046 50.000 28.71 15.45 0.00 3.16
2532 11138 1.338020 CGAGGGAAAGCTTTGCACTTT 59.662 47.619 28.71 13.16 39.99 2.66
2533 11139 2.747436 GAGGGAAAGCTTTGCACTTTG 58.253 47.619 28.71 0.00 37.47 2.77
2534 11140 1.413812 AGGGAAAGCTTTGCACTTTGG 59.586 47.619 28.71 0.00 37.47 3.28
2535 11141 1.220529 GGAAAGCTTTGCACTTTGGC 58.779 50.000 24.02 3.20 37.47 4.52
2536 11142 0.854705 GAAAGCTTTGCACTTTGGCG 59.145 50.000 18.30 0.00 37.47 5.69
2537 11143 1.153597 AAAGCTTTGCACTTTGGCGC 61.154 50.000 11.80 0.00 36.04 6.53
2538 11144 2.976692 AAGCTTTGCACTTTGGCGCC 62.977 55.000 22.73 22.73 36.28 6.53
2539 11145 2.416678 CTTTGCACTTTGGCGCCA 59.583 55.556 29.03 29.03 36.28 5.69
2540 11146 1.227205 CTTTGCACTTTGGCGCCAA 60.227 52.632 37.30 37.30 36.28 4.52
2541 11147 1.489881 CTTTGCACTTTGGCGCCAAC 61.490 55.000 40.36 28.21 35.46 3.77
2542 11148 3.764810 TTGCACTTTGGCGCCAACG 62.765 57.895 40.36 37.97 44.07 4.10
2553 11159 3.177249 GCCAACGCCTACGACGTC 61.177 66.667 2.43 5.18 44.30 4.34
2554 11160 2.505557 CCAACGCCTACGACGTCC 60.506 66.667 10.58 0.00 44.30 4.79
2555 11161 2.872925 CAACGCCTACGACGTCCG 60.873 66.667 10.58 9.78 44.30 4.79
2571 11177 3.479269 CGTCGGTGCCGCTTTCTC 61.479 66.667 5.64 0.00 39.59 2.87
2572 11178 3.119096 GTCGGTGCCGCTTTCTCC 61.119 66.667 5.64 0.00 39.59 3.71
2573 11179 4.388499 TCGGTGCCGCTTTCTCCC 62.388 66.667 5.64 0.00 39.59 4.30
2574 11180 4.394712 CGGTGCCGCTTTCTCCCT 62.395 66.667 0.00 0.00 0.00 4.20
2575 11181 2.747855 GGTGCCGCTTTCTCCCTG 60.748 66.667 0.00 0.00 0.00 4.45
2576 11182 2.347490 GTGCCGCTTTCTCCCTGA 59.653 61.111 0.00 0.00 0.00 3.86
2577 11183 1.302511 GTGCCGCTTTCTCCCTGAA 60.303 57.895 0.00 0.00 0.00 3.02
2578 11184 1.003355 TGCCGCTTTCTCCCTGAAG 60.003 57.895 0.00 0.00 35.89 3.02
2579 11185 1.296715 GCCGCTTTCTCCCTGAAGA 59.703 57.895 0.00 0.00 35.89 2.87
2580 11186 1.021920 GCCGCTTTCTCCCTGAAGAC 61.022 60.000 0.00 0.00 35.89 3.01
2581 11187 0.391793 CCGCTTTCTCCCTGAAGACC 60.392 60.000 0.00 0.00 35.89 3.85
2582 11188 0.321671 CGCTTTCTCCCTGAAGACCA 59.678 55.000 0.00 0.00 35.89 4.02
2583 11189 1.674221 CGCTTTCTCCCTGAAGACCAG 60.674 57.143 0.00 0.00 42.55 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.927281 ACCAGATTCGGCTTACTACTTAA 57.073 39.130 0.00 0.00 0.00 1.85
2 3 5.681695 GCTTACCAGATTCGGCTTACTACTT 60.682 44.000 0.00 0.00 0.00 2.24
5 6 3.958798 AGCTTACCAGATTCGGCTTACTA 59.041 43.478 0.00 0.00 0.00 1.82
6 7 2.766828 AGCTTACCAGATTCGGCTTACT 59.233 45.455 0.00 0.00 0.00 2.24
8 9 3.055385 ACAAGCTTACCAGATTCGGCTTA 60.055 43.478 0.00 0.00 37.83 3.09
9 10 2.290323 ACAAGCTTACCAGATTCGGCTT 60.290 45.455 0.00 0.00 40.05 4.35
10 11 1.279271 ACAAGCTTACCAGATTCGGCT 59.721 47.619 0.00 0.00 0.00 5.52
11 12 1.739067 ACAAGCTTACCAGATTCGGC 58.261 50.000 0.00 0.00 0.00 5.54
12 13 3.195661 GGTACAAGCTTACCAGATTCGG 58.804 50.000 12.69 0.00 41.27 4.30
13 14 2.858344 CGGTACAAGCTTACCAGATTCG 59.142 50.000 16.78 0.38 41.65 3.34
14 15 3.858247 ACGGTACAAGCTTACCAGATTC 58.142 45.455 16.78 0.00 41.65 2.52
16 17 3.975168 AACGGTACAAGCTTACCAGAT 57.025 42.857 16.78 3.99 41.65 2.90
17 18 3.181463 ACAAACGGTACAAGCTTACCAGA 60.181 43.478 16.78 0.00 41.65 3.86
18 19 3.135994 ACAAACGGTACAAGCTTACCAG 58.864 45.455 16.78 12.00 41.65 4.00
19 20 3.196939 ACAAACGGTACAAGCTTACCA 57.803 42.857 16.78 0.00 41.65 3.25
20 21 4.201940 ACAAACAAACGGTACAAGCTTACC 60.202 41.667 8.18 8.18 38.59 2.85
21 22 4.912214 ACAAACAAACGGTACAAGCTTAC 58.088 39.130 0.00 0.00 0.00 2.34
22 23 4.877251 AGACAAACAAACGGTACAAGCTTA 59.123 37.500 0.00 0.00 0.00 3.09
23 24 3.692593 AGACAAACAAACGGTACAAGCTT 59.307 39.130 0.00 0.00 0.00 3.74
24 25 3.275999 AGACAAACAAACGGTACAAGCT 58.724 40.909 0.00 0.00 0.00 3.74
25 26 3.614588 GAGACAAACAAACGGTACAAGC 58.385 45.455 0.00 0.00 0.00 4.01
26 27 3.552699 TCGAGACAAACAAACGGTACAAG 59.447 43.478 0.00 0.00 0.00 3.16
27 28 3.306703 GTCGAGACAAACAAACGGTACAA 59.693 43.478 0.00 0.00 0.00 2.41
28 29 2.859538 GTCGAGACAAACAAACGGTACA 59.140 45.455 0.00 0.00 0.00 2.90
29 30 3.118542 AGTCGAGACAAACAAACGGTAC 58.881 45.455 5.99 0.00 0.00 3.34
30 31 3.374745 GAGTCGAGACAAACAAACGGTA 58.625 45.455 5.99 0.00 0.00 4.02
31 32 2.199236 GAGTCGAGACAAACAAACGGT 58.801 47.619 5.99 0.00 0.00 4.83
32 33 1.189446 CGAGTCGAGACAAACAAACGG 59.811 52.381 6.73 0.00 0.00 4.44
33 34 2.114056 TCGAGTCGAGACAAACAAACG 58.886 47.619 12.09 0.00 0.00 3.60
34 35 5.152097 TCTATCGAGTCGAGACAAACAAAC 58.848 41.667 21.36 0.00 39.91 2.93
35 36 5.366829 TCTATCGAGTCGAGACAAACAAA 57.633 39.130 21.36 0.00 39.91 2.83
36 37 5.562506 ATCTATCGAGTCGAGACAAACAA 57.437 39.130 21.36 1.00 39.91 2.83
37 38 6.047231 TCTATCTATCGAGTCGAGACAAACA 58.953 40.000 21.36 0.00 39.91 2.83
38 39 6.528014 TCTATCTATCGAGTCGAGACAAAC 57.472 41.667 21.36 0.00 39.91 2.93
39 40 7.156000 AGATCTATCTATCGAGTCGAGACAAA 58.844 38.462 21.36 5.54 39.91 2.83
40 41 6.693466 AGATCTATCTATCGAGTCGAGACAA 58.307 40.000 21.36 5.70 39.91 3.18
41 42 6.275494 AGATCTATCTATCGAGTCGAGACA 57.725 41.667 21.36 4.27 39.91 3.41
42 43 7.478322 ACTAGATCTATCTATCGAGTCGAGAC 58.522 42.308 21.36 2.56 37.28 3.36
43 44 7.634671 ACTAGATCTATCTATCGAGTCGAGA 57.365 40.000 21.36 15.74 37.28 4.04
44 45 7.909777 GACTAGATCTATCTATCGAGTCGAG 57.090 44.000 21.36 8.41 43.77 4.04
48 49 7.490657 ACCAGACTAGATCTATCTATCGAGT 57.509 40.000 2.11 0.00 42.36 4.18
49 50 7.279981 CCAACCAGACTAGATCTATCTATCGAG 59.720 44.444 2.11 0.00 38.60 4.04
50 51 7.106890 CCAACCAGACTAGATCTATCTATCGA 58.893 42.308 2.11 0.00 38.60 3.59
51 52 6.183360 GCCAACCAGACTAGATCTATCTATCG 60.183 46.154 2.11 0.00 38.60 2.92
52 53 6.183360 CGCCAACCAGACTAGATCTATCTATC 60.183 46.154 2.11 0.00 38.60 2.08
53 54 5.650266 CGCCAACCAGACTAGATCTATCTAT 59.350 44.000 2.11 0.00 38.60 1.98
54 55 5.004448 CGCCAACCAGACTAGATCTATCTA 58.996 45.833 2.11 0.02 38.32 1.98
55 56 3.823873 CGCCAACCAGACTAGATCTATCT 59.176 47.826 2.11 5.97 40.86 1.98
56 57 3.821600 TCGCCAACCAGACTAGATCTATC 59.178 47.826 2.11 3.80 35.15 2.08
57 58 3.833732 TCGCCAACCAGACTAGATCTAT 58.166 45.455 2.11 0.00 35.15 1.98
58 59 3.292492 TCGCCAACCAGACTAGATCTA 57.708 47.619 1.69 1.69 35.15 1.98
59 60 2.145397 TCGCCAACCAGACTAGATCT 57.855 50.000 0.00 0.00 38.66 2.75
60 61 2.815478 CTTCGCCAACCAGACTAGATC 58.185 52.381 0.00 0.00 0.00 2.75
61 62 1.134670 GCTTCGCCAACCAGACTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
62 63 0.246635 GCTTCGCCAACCAGACTAGA 59.753 55.000 0.00 0.00 0.00 2.43
63 64 1.078759 CGCTTCGCCAACCAGACTAG 61.079 60.000 0.00 0.00 0.00 2.57
64 65 1.080093 CGCTTCGCCAACCAGACTA 60.080 57.895 0.00 0.00 0.00 2.59
65 66 2.357517 CGCTTCGCCAACCAGACT 60.358 61.111 0.00 0.00 0.00 3.24
77 78 4.708601 TCACGAAGAATAAAAAGCGCTTC 58.291 39.130 25.24 10.04 33.45 3.86
78 79 4.742438 TCACGAAGAATAAAAAGCGCTT 57.258 36.364 18.98 18.98 0.00 4.68
79 80 4.024387 TGTTCACGAAGAATAAAAAGCGCT 60.024 37.500 2.64 2.64 38.76 5.92
80 81 4.215965 TGTTCACGAAGAATAAAAAGCGC 58.784 39.130 0.00 0.00 38.76 5.92
81 82 6.085068 GTCTTGTTCACGAAGAATAAAAAGCG 59.915 38.462 0.00 0.00 36.97 4.68
82 83 7.132863 AGTCTTGTTCACGAAGAATAAAAAGC 58.867 34.615 0.00 0.00 36.97 3.51
83 84 9.503427 AAAGTCTTGTTCACGAAGAATAAAAAG 57.497 29.630 0.00 0.00 36.97 2.27
84 85 9.498307 GAAAGTCTTGTTCACGAAGAATAAAAA 57.502 29.630 0.00 0.00 36.97 1.94
85 86 8.889717 AGAAAGTCTTGTTCACGAAGAATAAAA 58.110 29.630 0.00 0.00 36.97 1.52
86 87 8.433421 AGAAAGTCTTGTTCACGAAGAATAAA 57.567 30.769 0.00 0.00 36.97 1.40
87 88 7.926555 AGAGAAAGTCTTGTTCACGAAGAATAA 59.073 33.333 0.00 0.00 32.63 1.40
88 89 7.434492 AGAGAAAGTCTTGTTCACGAAGAATA 58.566 34.615 0.00 0.00 32.63 1.75
89 90 6.284459 AGAGAAAGTCTTGTTCACGAAGAAT 58.716 36.000 0.00 0.00 32.63 2.40
90 91 5.661458 AGAGAAAGTCTTGTTCACGAAGAA 58.339 37.500 0.00 0.00 31.27 2.52
91 92 5.067936 AGAGAGAAAGTCTTGTTCACGAAGA 59.932 40.000 0.00 0.00 34.71 2.87
92 93 5.285651 AGAGAGAAAGTCTTGTTCACGAAG 58.714 41.667 0.00 0.00 34.71 3.79
93 94 5.263968 AGAGAGAAAGTCTTGTTCACGAA 57.736 39.130 0.00 0.00 34.71 3.85
94 95 4.920640 AGAGAGAAAGTCTTGTTCACGA 57.079 40.909 0.00 0.00 34.71 4.35
95 96 5.321983 CAAGAGAGAAAGTCTTGTTCACG 57.678 43.478 4.93 0.00 44.00 4.35
102 103 6.462347 GGTCAAGAGTCAAGAGAGAAAGTCTT 60.462 42.308 0.00 0.00 34.71 3.01
103 104 5.010617 GGTCAAGAGTCAAGAGAGAAAGTCT 59.989 44.000 0.00 0.00 38.71 3.24
104 105 5.010617 AGGTCAAGAGTCAAGAGAGAAAGTC 59.989 44.000 0.00 0.00 0.00 3.01
105 106 4.898861 AGGTCAAGAGTCAAGAGAGAAAGT 59.101 41.667 0.00 0.00 0.00 2.66
106 107 5.221422 ACAGGTCAAGAGTCAAGAGAGAAAG 60.221 44.000 0.00 0.00 0.00 2.62
107 108 4.651503 ACAGGTCAAGAGTCAAGAGAGAAA 59.348 41.667 0.00 0.00 0.00 2.52
108 109 4.038522 CACAGGTCAAGAGTCAAGAGAGAA 59.961 45.833 0.00 0.00 0.00 2.87
109 110 3.571828 CACAGGTCAAGAGTCAAGAGAGA 59.428 47.826 0.00 0.00 0.00 3.10
110 111 3.571828 TCACAGGTCAAGAGTCAAGAGAG 59.428 47.826 0.00 0.00 0.00 3.20
111 112 3.566351 TCACAGGTCAAGAGTCAAGAGA 58.434 45.455 0.00 0.00 0.00 3.10
112 113 4.244066 CATCACAGGTCAAGAGTCAAGAG 58.756 47.826 0.00 0.00 0.00 2.85
113 114 4.263018 CATCACAGGTCAAGAGTCAAGA 57.737 45.455 0.00 0.00 0.00 3.02
638 639 3.933861 AGAAGAAAGTGTCCACCAACT 57.066 42.857 0.00 0.00 0.00 3.16
657 658 8.589701 AGGGTCCACCAAAGTTAATAATTAAG 57.410 34.615 0.00 0.00 43.89 1.85
658 659 8.959676 AAGGGTCCACCAAAGTTAATAATTAA 57.040 30.769 0.00 0.00 43.89 1.40
660 661 6.439375 GGAAGGGTCCACCAAAGTTAATAATT 59.561 38.462 0.00 0.00 44.26 1.40
661 662 5.955959 GGAAGGGTCCACCAAAGTTAATAAT 59.044 40.000 0.00 0.00 44.26 1.28
664 665 3.774734 GGAAGGGTCCACCAAAGTTAAT 58.225 45.455 0.00 0.00 44.26 1.40
685 686 3.802948 AATACTAGACGAAGCCCACAG 57.197 47.619 0.00 0.00 0.00 3.66
767 772 1.961277 GGCTTCATCCATACCGCCG 60.961 63.158 0.00 0.00 0.00 6.46
768 773 0.886490 CTGGCTTCATCCATACCGCC 60.886 60.000 0.00 0.00 35.22 6.13
824 841 1.340405 CCTGCCTTTGTATGGAGCTGT 60.340 52.381 0.00 0.00 0.00 4.40
828 845 0.257039 AGGCCTGCCTTTGTATGGAG 59.743 55.000 3.11 0.00 45.70 3.86
921 938 3.277602 TAGCTCGGCGGTCGCTAG 61.278 66.667 17.72 13.11 41.60 3.42
1018 6354 7.119846 CGAGTGGGTTTAGATTTGAGAAGAAAT 59.880 37.037 0.00 0.00 0.00 2.17
1027 6363 2.161609 GGCACGAGTGGGTTTAGATTTG 59.838 50.000 5.32 0.00 0.00 2.32
1041 6377 0.821711 AGGAGCTAGCTAGGCACGAG 60.822 60.000 19.38 0.00 0.00 4.18
1218 6629 0.729116 CGGCGCATCTTCTTGTTGAT 59.271 50.000 10.83 0.00 0.00 2.57
1251 9797 1.764854 ACACGAACTGGTCCCCACT 60.765 57.895 0.00 0.00 0.00 4.00
1259 9805 1.151777 ACGTCTTGCACACGAACTGG 61.152 55.000 21.21 0.00 39.75 4.00
1289 9835 2.434359 GCCTGGAACGACGGGAAG 60.434 66.667 0.00 0.00 39.34 3.46
1316 9862 4.954118 AGGTGGCTGGTCCGGTGA 62.954 66.667 0.00 0.00 37.80 4.02
1394 9949 2.526888 TCTGATCCGTACTCTTGGGT 57.473 50.000 0.00 0.00 0.00 4.51
1520 10090 0.390860 AGACAAACAGCTCGAGCAGT 59.609 50.000 36.87 32.24 45.16 4.40
1567 10145 4.214119 ACGCATATATTCATGTCAGCAACC 59.786 41.667 0.00 0.00 0.00 3.77
1571 10149 3.187022 TGCACGCATATATTCATGTCAGC 59.813 43.478 0.00 0.00 0.00 4.26
1580 10158 2.821546 ACGACTGTGCACGCATATATT 58.178 42.857 13.13 0.00 0.00 1.28
1581 10159 2.509052 ACGACTGTGCACGCATATAT 57.491 45.000 13.13 0.00 0.00 0.86
1582 10160 2.857104 GCTACGACTGTGCACGCATATA 60.857 50.000 13.13 1.18 0.00 0.86
1596 10174 3.119602 TGATCAACACCTACTGCTACGAC 60.120 47.826 0.00 0.00 0.00 4.34
1683 10277 8.173775 TGAAACAACATAAACGAACGAACTAAA 58.826 29.630 0.14 0.00 0.00 1.85
1716 10310 9.778741 TTATGAAACAGTCAACTGAGAAATAGT 57.221 29.630 16.71 0.00 46.59 2.12
1749 10348 2.769663 ACAAACTATGGGCATAGACCGA 59.230 45.455 0.00 0.00 42.55 4.69
1762 10361 1.219522 GGGCGCGCGATACAAACTAT 61.220 55.000 37.18 0.00 0.00 2.12
1763 10362 1.879430 GGGCGCGCGATACAAACTA 60.879 57.895 37.18 0.00 0.00 2.24
1766 10365 3.492545 GTGGGCGCGCGATACAAA 61.493 61.111 37.18 11.73 0.00 2.83
1818 10417 4.217118 AGCACTCCAACAAGATTCATTCAC 59.783 41.667 0.00 0.00 0.00 3.18
1840 10439 7.818446 CCTCATCATAACTAGATCATTCCACAG 59.182 40.741 0.00 0.00 0.00 3.66
1910 10509 7.002879 AGCCAGTAAATGAATCTGCTAATCAT 58.997 34.615 0.00 0.00 35.39 2.45
1950 10549 5.015515 ACGGAGGGAGTACTATTTATAGGC 58.984 45.833 0.00 0.00 34.69 3.93
1952 10551 6.483405 AGGACGGAGGGAGTACTATTTATAG 58.517 44.000 0.00 0.00 29.47 1.31
2031 10633 2.561858 ACTACTCCCTCCGTCTCAAAAC 59.438 50.000 0.00 0.00 0.00 2.43
2045 10647 4.982916 CACATACGGCTATGAAACTACTCC 59.017 45.833 9.84 0.00 34.77 3.85
2046 10648 5.828747 TCACATACGGCTATGAAACTACTC 58.171 41.667 9.84 0.00 34.77 2.59
2055 10657 7.352739 GTTTTCCTATTTCACATACGGCTATG 58.647 38.462 0.00 3.42 36.54 2.23
2058 10660 4.638865 GGTTTTCCTATTTCACATACGGCT 59.361 41.667 0.00 0.00 36.94 5.52
2060 10662 6.693315 ATGGTTTTCCTATTTCACATACGG 57.307 37.500 0.00 0.00 41.38 4.02
2094 10696 7.094631 TCCGGATGATAAGTAAATAACCATCG 58.905 38.462 0.00 0.00 32.18 3.84
2100 10702 7.074653 AGGCTTCCGGATGATAAGTAAATAA 57.925 36.000 20.87 0.00 0.00 1.40
2101 10703 6.681729 AGGCTTCCGGATGATAAGTAAATA 57.318 37.500 20.87 0.00 0.00 1.40
2109 10711 3.769844 GGAGATAAGGCTTCCGGATGATA 59.230 47.826 20.87 10.22 0.00 2.15
2135 10737 5.451381 CGATATCCGGCAGCAATAAGGTATA 60.451 44.000 0.00 0.00 33.91 1.47
2143 10745 0.952497 CTGCGATATCCGGCAGCAAT 60.952 55.000 16.49 0.00 37.38 3.56
2157 10759 3.699955 CTGGCGGATTCGACTGCGA 62.700 63.158 20.28 6.14 46.40 5.10
2164 10766 0.387929 TAAGGTAGCTGGCGGATTCG 59.612 55.000 0.00 0.00 39.81 3.34
2187 10789 7.516450 TCCTCTTCAAGAAAAGATCCCTTAT 57.484 36.000 0.00 0.00 34.85 1.73
2196 10798 4.475016 TCCCCCTATCCTCTTCAAGAAAAG 59.525 45.833 0.00 0.00 0.00 2.27
2197 10799 4.444611 TCCCCCTATCCTCTTCAAGAAAA 58.555 43.478 0.00 0.00 0.00 2.29
2198 10800 4.088634 TCCCCCTATCCTCTTCAAGAAA 57.911 45.455 0.00 0.00 0.00 2.52
2199 10801 3.795755 TCCCCCTATCCTCTTCAAGAA 57.204 47.619 0.00 0.00 0.00 2.52
2208 10810 2.000048 TGTTTGCTTTCCCCCTATCCT 59.000 47.619 0.00 0.00 0.00 3.24
2209 10811 2.525105 TGTTTGCTTTCCCCCTATCC 57.475 50.000 0.00 0.00 0.00 2.59
2210 10812 3.697166 TCTTGTTTGCTTTCCCCCTATC 58.303 45.455 0.00 0.00 0.00 2.08
2214 10816 3.552132 TTTTCTTGTTTGCTTTCCCCC 57.448 42.857 0.00 0.00 0.00 5.40
2248 10850 2.203280 TTGTGGGAGCAACGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
2252 10854 2.664851 TCGCTTGTGGGAGCAACG 60.665 61.111 0.00 0.00 42.83 4.10
2262 10864 2.359967 GGCCCTCCTAGTCGCTTGT 61.360 63.158 0.00 0.00 0.00 3.16
2264 10866 1.612442 TTGGCCCTCCTAGTCGCTT 60.612 57.895 0.00 0.00 0.00 4.68
2287 10893 4.083862 GGAGACCTCCGGTGGCAC 62.084 72.222 22.46 15.98 40.36 5.01
2320 10926 2.507944 CAATCTGGCGAGAGGGGG 59.492 66.667 4.31 0.00 0.00 5.40
2321 10927 2.370445 ACCAATCTGGCGAGAGGGG 61.370 63.158 19.05 16.81 42.67 4.79
2322 10928 1.153289 CACCAATCTGGCGAGAGGG 60.153 63.158 15.01 15.01 42.67 4.30
2323 10929 1.153289 CCACCAATCTGGCGAGAGG 60.153 63.158 4.31 3.51 42.67 3.69
2324 10930 0.742281 CACCACCAATCTGGCGAGAG 60.742 60.000 4.31 0.00 42.67 3.20
2325 10931 1.296392 CACCACCAATCTGGCGAGA 59.704 57.895 0.00 0.00 42.67 4.04
2326 10932 1.746615 CCACCACCAATCTGGCGAG 60.747 63.158 0.00 0.00 42.67 5.03
2327 10933 2.350895 CCACCACCAATCTGGCGA 59.649 61.111 0.00 0.00 42.67 5.54
2328 10934 3.443045 GCCACCACCAATCTGGCG 61.443 66.667 0.00 0.00 42.67 5.69
2329 10935 3.443045 CGCCACCACCAATCTGGC 61.443 66.667 0.00 0.00 46.07 4.85
2330 10936 2.751436 CCGCCACCACCAATCTGG 60.751 66.667 0.00 0.00 45.02 3.86
2331 10937 2.034066 ACCGCCACCACCAATCTG 59.966 61.111 0.00 0.00 0.00 2.90
2332 10938 2.034066 CACCGCCACCACCAATCT 59.966 61.111 0.00 0.00 0.00 2.40
2333 10939 3.061848 CCACCGCCACCACCAATC 61.062 66.667 0.00 0.00 0.00 2.67
2334 10940 3.897122 ACCACCGCCACCACCAAT 61.897 61.111 0.00 0.00 0.00 3.16
2335 10941 4.885270 CACCACCGCCACCACCAA 62.885 66.667 0.00 0.00 0.00 3.67
2341 10947 4.947147 TGAAGCCACCACCGCCAC 62.947 66.667 0.00 0.00 0.00 5.01
2342 10948 4.947147 GTGAAGCCACCACCGCCA 62.947 66.667 0.00 0.00 37.33 5.69
2360 10966 1.672356 CCGCCCTCACAACCAAGAG 60.672 63.158 0.00 0.00 0.00 2.85
2361 10967 2.429930 CCGCCCTCACAACCAAGA 59.570 61.111 0.00 0.00 0.00 3.02
2362 10968 3.365265 GCCGCCCTCACAACCAAG 61.365 66.667 0.00 0.00 0.00 3.61
2363 10969 3.723097 TTGCCGCCCTCACAACCAA 62.723 57.895 0.00 0.00 0.00 3.67
2364 10970 4.196778 TTGCCGCCCTCACAACCA 62.197 61.111 0.00 0.00 0.00 3.67
2365 10971 3.365265 CTTGCCGCCCTCACAACC 61.365 66.667 0.00 0.00 0.00 3.77
2366 10972 3.365265 CCTTGCCGCCCTCACAAC 61.365 66.667 0.00 0.00 0.00 3.32
2367 10973 4.659172 CCCTTGCCGCCCTCACAA 62.659 66.667 0.00 0.00 0.00 3.33
2373 10979 4.796495 CTACACCCCTTGCCGCCC 62.796 72.222 0.00 0.00 0.00 6.13
2374 10980 2.588856 CTACTACACCCCTTGCCGCC 62.589 65.000 0.00 0.00 0.00 6.13
2375 10981 1.153429 CTACTACACCCCTTGCCGC 60.153 63.158 0.00 0.00 0.00 6.53
2376 10982 1.153429 GCTACTACACCCCTTGCCG 60.153 63.158 0.00 0.00 0.00 5.69
2377 10983 1.153429 CGCTACTACACCCCTTGCC 60.153 63.158 0.00 0.00 0.00 4.52
2378 10984 1.814169 GCGCTACTACACCCCTTGC 60.814 63.158 0.00 0.00 0.00 4.01
2379 10985 1.518572 CGCGCTACTACACCCCTTG 60.519 63.158 5.56 0.00 0.00 3.61
2380 10986 1.664321 CTCGCGCTACTACACCCCTT 61.664 60.000 5.56 0.00 0.00 3.95
2381 10987 2.044650 TCGCGCTACTACACCCCT 60.045 61.111 5.56 0.00 0.00 4.79
2382 10988 2.412112 CTCGCGCTACTACACCCC 59.588 66.667 5.56 0.00 0.00 4.95
2383 10989 1.941999 AACCTCGCGCTACTACACCC 61.942 60.000 5.56 0.00 0.00 4.61
2384 10990 0.525029 GAACCTCGCGCTACTACACC 60.525 60.000 5.56 0.00 0.00 4.16
2385 10991 0.450983 AGAACCTCGCGCTACTACAC 59.549 55.000 5.56 0.00 0.00 2.90
2386 10992 0.450583 CAGAACCTCGCGCTACTACA 59.549 55.000 5.56 0.00 0.00 2.74
2387 10993 0.248539 CCAGAACCTCGCGCTACTAC 60.249 60.000 5.56 0.00 0.00 2.73
2388 10994 2.001361 GCCAGAACCTCGCGCTACTA 62.001 60.000 5.56 0.00 0.00 1.82
2389 10995 2.885861 CCAGAACCTCGCGCTACT 59.114 61.111 5.56 0.00 0.00 2.57
2390 10996 2.886124 GCCAGAACCTCGCGCTAC 60.886 66.667 5.56 0.00 0.00 3.58
2391 10997 2.721167 ATGCCAGAACCTCGCGCTA 61.721 57.895 5.56 0.00 0.00 4.26
2392 10998 4.087892 ATGCCAGAACCTCGCGCT 62.088 61.111 5.56 0.00 0.00 5.92
2393 10999 3.869272 CATGCCAGAACCTCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
2394 11000 2.434884 ACATGCCAGAACCTCGCG 60.435 61.111 0.00 0.00 0.00 5.87
2395 11001 2.456119 CGACATGCCAGAACCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
2396 11002 1.078759 GACGACATGCCAGAACCTCG 61.079 60.000 0.00 0.00 0.00 4.63
2397 11003 0.247736 AGACGACATGCCAGAACCTC 59.752 55.000 0.00 0.00 0.00 3.85
2398 11004 0.687354 AAGACGACATGCCAGAACCT 59.313 50.000 0.00 0.00 0.00 3.50
2399 11005 1.464997 GAAAGACGACATGCCAGAACC 59.535 52.381 0.00 0.00 0.00 3.62
2400 11006 2.417719 AGAAAGACGACATGCCAGAAC 58.582 47.619 0.00 0.00 0.00 3.01
2401 11007 2.839486 AGAAAGACGACATGCCAGAA 57.161 45.000 0.00 0.00 0.00 3.02
2402 11008 2.037121 TGAAGAAAGACGACATGCCAGA 59.963 45.455 0.00 0.00 0.00 3.86
2403 11009 2.414481 CTGAAGAAAGACGACATGCCAG 59.586 50.000 0.00 0.00 0.00 4.85
2404 11010 2.037121 TCTGAAGAAAGACGACATGCCA 59.963 45.455 0.00 0.00 0.00 4.92
2405 11011 2.688507 TCTGAAGAAAGACGACATGCC 58.311 47.619 0.00 0.00 0.00 4.40
2406 11012 3.743396 ACTTCTGAAGAAAGACGACATGC 59.257 43.478 23.36 0.00 33.07 4.06
2407 11013 4.984785 TCACTTCTGAAGAAAGACGACATG 59.015 41.667 23.36 7.56 33.07 3.21
2408 11014 5.201713 TCACTTCTGAAGAAAGACGACAT 57.798 39.130 23.36 0.00 33.07 3.06
2409 11015 4.649088 TCACTTCTGAAGAAAGACGACA 57.351 40.909 23.36 0.00 33.07 4.35
2410 11016 5.223382 TCATCACTTCTGAAGAAAGACGAC 58.777 41.667 23.36 0.00 33.07 4.34
2411 11017 5.453567 TCATCACTTCTGAAGAAAGACGA 57.546 39.130 23.36 12.59 33.07 4.20
2412 11018 5.445673 GCATCATCACTTCTGAAGAAAGACG 60.446 44.000 23.36 10.71 33.07 4.18
2413 11019 5.163774 GGCATCATCACTTCTGAAGAAAGAC 60.164 44.000 23.36 4.95 33.07 3.01
2414 11020 4.940046 GGCATCATCACTTCTGAAGAAAGA 59.060 41.667 23.36 16.66 33.07 2.52
2415 11021 4.096081 GGGCATCATCACTTCTGAAGAAAG 59.904 45.833 23.36 12.39 33.07 2.62
2416 11022 4.012374 GGGCATCATCACTTCTGAAGAAA 58.988 43.478 23.36 11.00 33.07 2.52
2417 11023 3.009363 TGGGCATCATCACTTCTGAAGAA 59.991 43.478 23.36 11.34 28.23 2.52
2418 11024 2.573009 TGGGCATCATCACTTCTGAAGA 59.427 45.455 23.36 3.09 0.00 2.87
2419 11025 2.943690 CTGGGCATCATCACTTCTGAAG 59.056 50.000 15.59 15.59 0.00 3.02
2420 11026 2.573009 TCTGGGCATCATCACTTCTGAA 59.427 45.455 0.00 0.00 0.00 3.02
2421 11027 2.190538 TCTGGGCATCATCACTTCTGA 58.809 47.619 0.00 0.00 0.00 3.27
2422 11028 2.704464 TCTGGGCATCATCACTTCTG 57.296 50.000 0.00 0.00 0.00 3.02
2423 11029 3.047115 AGATCTGGGCATCATCACTTCT 58.953 45.455 0.00 0.00 0.00 2.85
2424 11030 3.139850 CAGATCTGGGCATCATCACTTC 58.860 50.000 15.38 0.00 0.00 3.01
2425 11031 2.158652 CCAGATCTGGGCATCATCACTT 60.159 50.000 31.14 0.00 46.81 3.16
2426 11032 1.420514 CCAGATCTGGGCATCATCACT 59.579 52.381 31.14 0.00 46.81 3.41
2427 11033 1.893544 CCAGATCTGGGCATCATCAC 58.106 55.000 31.14 0.00 46.81 3.06
2438 11044 2.106566 AGCCTAGTCACACCAGATCTG 58.893 52.381 16.24 16.24 0.00 2.90
2439 11045 2.541233 AGCCTAGTCACACCAGATCT 57.459 50.000 0.00 0.00 0.00 2.75
2440 11046 2.035321 GCTAGCCTAGTCACACCAGATC 59.965 54.545 2.29 0.00 0.00 2.75
2441 11047 2.035632 GCTAGCCTAGTCACACCAGAT 58.964 52.381 2.29 0.00 0.00 2.90
2442 11048 1.475403 GCTAGCCTAGTCACACCAGA 58.525 55.000 2.29 0.00 0.00 3.86
2443 11049 0.461961 GGCTAGCCTAGTCACACCAG 59.538 60.000 27.17 0.00 0.00 4.00
2444 11050 0.041238 AGGCTAGCCTAGTCACACCA 59.959 55.000 35.28 0.00 46.14 4.17
2445 11051 2.903404 AGGCTAGCCTAGTCACACC 58.097 57.895 35.28 3.06 46.14 4.16
2455 11061 2.202756 CCACGACGAAGGCTAGCC 60.203 66.667 27.19 27.19 0.00 3.93
2456 11062 1.805945 CACCACGACGAAGGCTAGC 60.806 63.158 6.04 6.04 0.00 3.42
2457 11063 1.153823 CCACCACGACGAAGGCTAG 60.154 63.158 0.00 0.00 0.00 3.42
2458 11064 1.904865 ACCACCACGACGAAGGCTA 60.905 57.895 0.00 0.00 0.00 3.93
2459 11065 3.231736 ACCACCACGACGAAGGCT 61.232 61.111 0.00 0.00 0.00 4.58
2460 11066 3.041940 CACCACCACGACGAAGGC 61.042 66.667 0.00 0.00 0.00 4.35
2461 11067 0.812412 AAACACCACCACGACGAAGG 60.812 55.000 0.00 5.65 0.00 3.46
2462 11068 1.790623 CTAAACACCACCACGACGAAG 59.209 52.381 0.00 0.00 0.00 3.79
2463 11069 1.538634 CCTAAACACCACCACGACGAA 60.539 52.381 0.00 0.00 0.00 3.85
2464 11070 0.032403 CCTAAACACCACCACGACGA 59.968 55.000 0.00 0.00 0.00 4.20
2465 11071 0.032403 TCCTAAACACCACCACGACG 59.968 55.000 0.00 0.00 0.00 5.12
2466 11072 2.467566 ATCCTAAACACCACCACGAC 57.532 50.000 0.00 0.00 0.00 4.34
2467 11073 2.234414 GGTATCCTAAACACCACCACGA 59.766 50.000 0.00 0.00 32.32 4.35
2468 11074 2.235402 AGGTATCCTAAACACCACCACG 59.765 50.000 0.00 0.00 34.62 4.94
2469 11075 3.370209 GGAGGTATCCTAAACACCACCAC 60.370 52.174 2.11 0.00 41.29 4.16
2470 11076 2.841881 GGAGGTATCCTAAACACCACCA 59.158 50.000 2.11 0.00 41.29 4.17
2471 11077 3.555527 GGAGGTATCCTAAACACCACC 57.444 52.381 0.00 0.00 42.94 4.61
2487 11093 2.674380 GCTTGCACCACCAGGAGG 60.674 66.667 0.33 0.33 38.69 4.30
2488 11094 1.521450 CTTGCTTGCACCACCAGGAG 61.521 60.000 0.00 0.00 38.69 3.69
2489 11095 1.529010 CTTGCTTGCACCACCAGGA 60.529 57.895 0.00 0.00 38.69 3.86
2490 11096 1.394266 AACTTGCTTGCACCACCAGG 61.394 55.000 0.00 0.00 42.21 4.45
2491 11097 0.461135 AAACTTGCTTGCACCACCAG 59.539 50.000 0.00 0.00 0.00 4.00
2492 11098 0.459489 GAAACTTGCTTGCACCACCA 59.541 50.000 0.00 0.00 0.00 4.17
2493 11099 0.249447 GGAAACTTGCTTGCACCACC 60.249 55.000 0.00 0.00 0.00 4.61
2494 11100 0.594796 CGGAAACTTGCTTGCACCAC 60.595 55.000 0.00 0.00 0.00 4.16
2495 11101 0.749818 TCGGAAACTTGCTTGCACCA 60.750 50.000 0.00 0.00 0.00 4.17
2496 11102 0.040067 CTCGGAAACTTGCTTGCACC 60.040 55.000 0.00 0.00 0.00 5.01
2497 11103 0.040067 CCTCGGAAACTTGCTTGCAC 60.040 55.000 0.00 0.00 0.00 4.57
2498 11104 1.172180 CCCTCGGAAACTTGCTTGCA 61.172 55.000 0.00 0.00 0.00 4.08
2499 11105 0.889186 TCCCTCGGAAACTTGCTTGC 60.889 55.000 0.00 0.00 0.00 4.01
2500 11106 1.604604 TTCCCTCGGAAACTTGCTTG 58.395 50.000 0.00 0.00 38.93 4.01
2501 11107 2.230660 CTTTCCCTCGGAAACTTGCTT 58.769 47.619 1.66 0.00 45.42 3.91
2502 11108 1.897560 CTTTCCCTCGGAAACTTGCT 58.102 50.000 1.66 0.00 45.42 3.91
2503 11109 0.241213 GCTTTCCCTCGGAAACTTGC 59.759 55.000 1.66 1.60 45.42 4.01
2504 11110 1.897560 AGCTTTCCCTCGGAAACTTG 58.102 50.000 1.66 0.00 45.42 3.16
2505 11111 2.623416 CAAAGCTTTCCCTCGGAAACTT 59.377 45.455 9.23 8.01 45.42 2.66
2506 11112 2.230660 CAAAGCTTTCCCTCGGAAACT 58.769 47.619 9.23 2.92 45.42 2.66
2507 11113 1.335964 GCAAAGCTTTCCCTCGGAAAC 60.336 52.381 9.23 0.87 45.42 2.78
2509 11115 0.179004 TGCAAAGCTTTCCCTCGGAA 60.179 50.000 9.23 0.00 40.27 4.30
2510 11116 0.889186 GTGCAAAGCTTTCCCTCGGA 60.889 55.000 9.23 0.00 0.00 4.55
2511 11117 0.890996 AGTGCAAAGCTTTCCCTCGG 60.891 55.000 9.23 0.00 0.00 4.63
2512 11118 0.954452 AAGTGCAAAGCTTTCCCTCG 59.046 50.000 9.23 0.00 0.00 4.63
2513 11119 2.546584 CCAAAGTGCAAAGCTTTCCCTC 60.547 50.000 9.23 4.68 34.32 4.30
2514 11120 1.413812 CCAAAGTGCAAAGCTTTCCCT 59.586 47.619 9.23 2.32 34.32 4.20
2515 11121 1.869774 CCAAAGTGCAAAGCTTTCCC 58.130 50.000 9.23 4.05 34.32 3.97
2516 11122 1.220529 GCCAAAGTGCAAAGCTTTCC 58.779 50.000 9.23 0.00 34.32 3.13
2517 11123 0.854705 CGCCAAAGTGCAAAGCTTTC 59.145 50.000 9.23 5.26 34.32 2.62
2518 11124 2.976271 CGCCAAAGTGCAAAGCTTT 58.024 47.368 5.69 5.69 36.70 3.51
2519 11125 4.736165 CGCCAAAGTGCAAAGCTT 57.264 50.000 0.00 0.00 0.00 3.74
2554 11160 3.479269 GAGAAAGCGGCACCGACG 61.479 66.667 14.43 0.00 42.83 5.12
2555 11161 3.119096 GGAGAAAGCGGCACCGAC 61.119 66.667 14.43 4.28 42.83 4.79
2556 11162 4.388499 GGGAGAAAGCGGCACCGA 62.388 66.667 14.43 0.00 42.83 4.69
2557 11163 4.394712 AGGGAGAAAGCGGCACCG 62.395 66.667 4.30 4.30 43.09 4.94
2558 11164 2.747855 CAGGGAGAAAGCGGCACC 60.748 66.667 1.45 0.00 0.00 5.01
2559 11165 1.301677 CTTCAGGGAGAAAGCGGCAC 61.302 60.000 1.45 0.00 35.40 5.01
2560 11166 1.003355 CTTCAGGGAGAAAGCGGCA 60.003 57.895 1.45 0.00 35.40 5.69
2561 11167 1.021920 GTCTTCAGGGAGAAAGCGGC 61.022 60.000 0.00 0.00 35.40 6.53
2562 11168 0.391793 GGTCTTCAGGGAGAAAGCGG 60.392 60.000 0.00 0.00 35.40 5.52
2563 11169 0.321671 TGGTCTTCAGGGAGAAAGCG 59.678 55.000 0.00 0.00 35.40 4.68
2564 11170 2.106477 CTGGTCTTCAGGGAGAAAGC 57.894 55.000 0.00 0.00 39.76 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.