Multiple sequence alignment - TraesCS5D01G490300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G490300 chr5D 100.000 2501 0 0 1 2501 525120406 525117906 0.000000e+00 4619.0
1 TraesCS5D01G490300 chr5D 97.073 820 24 0 1682 2501 543575140 543574321 0.000000e+00 1382.0
2 TraesCS5D01G490300 chr5D 94.756 820 43 0 1682 2501 50709415 50708596 0.000000e+00 1277.0
3 TraesCS5D01G490300 chr5D 86.538 832 61 25 861 1669 525086573 525085770 0.000000e+00 869.0
4 TraesCS5D01G490300 chr5D 85.538 650 55 18 910 1545 525155017 525154393 0.000000e+00 643.0
5 TraesCS5D01G490300 chr5D 81.867 557 45 34 1001 1512 525243283 525242738 3.850000e-113 418.0
6 TraesCS5D01G490300 chr5D 91.275 298 17 4 4 294 525172748 525172453 5.010000e-107 398.0
7 TraesCS5D01G490300 chr5D 96.552 203 7 0 285 487 525155547 525155345 1.110000e-88 337.0
8 TraesCS5D01G490300 chr5D 85.965 114 8 5 38 150 525178408 525178302 5.650000e-22 115.0
9 TraesCS5D01G490300 chr5D 88.372 86 4 3 1603 1683 525154379 525154295 5.690000e-17 99.0
10 TraesCS5D01G490300 chr1D 97.314 819 22 0 1682 2500 40176510 40177328 0.000000e+00 1391.0
11 TraesCS5D01G490300 chr6D 96.829 820 26 0 1682 2501 429209609 429208790 0.000000e+00 1371.0
12 TraesCS5D01G490300 chr6D 96.341 820 30 0 1682 2501 430324950 430325769 0.000000e+00 1349.0
13 TraesCS5D01G490300 chr6D 95.244 820 39 0 1682 2501 367428558 367429377 0.000000e+00 1299.0
14 TraesCS5D01G490300 chr2D 96.719 823 27 0 1679 2501 436027936 436028758 0.000000e+00 1371.0
15 TraesCS5D01G490300 chr7D 95.383 823 36 1 1681 2501 543914595 543913773 0.000000e+00 1308.0
16 TraesCS5D01G490300 chr7D 94.891 822 42 0 1680 2501 40388241 40387420 0.000000e+00 1286.0
17 TraesCS5D01G490300 chr5A 86.891 862 63 21 834 1681 651523155 651522330 0.000000e+00 920.0
18 TraesCS5D01G490300 chr5A 84.557 790 61 27 914 1681 651518058 651517308 0.000000e+00 726.0
19 TraesCS5D01G490300 chr5A 80.571 525 61 20 997 1502 651758946 651759448 1.410000e-97 366.0
20 TraesCS5D01G490300 chr5A 97.778 45 1 0 860 904 651518136 651518092 7.420000e-11 78.7
21 TraesCS5D01G490300 chr5B 83.417 1001 92 35 712 1675 659463462 659462499 0.000000e+00 861.0
22 TraesCS5D01G490300 chr5B 85.427 844 59 24 860 1672 659471858 659471048 0.000000e+00 819.0
23 TraesCS5D01G490300 chr5B 82.057 836 86 36 860 1676 659475859 659475069 0.000000e+00 654.0
24 TraesCS5D01G490300 chr5B 80.686 554 58 25 1001 1512 659597333 659596787 3.900000e-103 385.0
25 TraesCS5D01G490300 chr5B 81.107 524 58 20 997 1501 659704427 659704928 5.050000e-102 381.0
26 TraesCS5D01G490300 chr5B 84.211 114 10 6 38 150 659507337 659507231 1.220000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G490300 chr5D 525117906 525120406 2500 True 4619.000000 4619 100.0000 1 2501 1 chr5D.!!$R3 2500
1 TraesCS5D01G490300 chr5D 543574321 543575140 819 True 1382.000000 1382 97.0730 1682 2501 1 chr5D.!!$R7 819
2 TraesCS5D01G490300 chr5D 50708596 50709415 819 True 1277.000000 1277 94.7560 1682 2501 1 chr5D.!!$R1 819
3 TraesCS5D01G490300 chr5D 525085770 525086573 803 True 869.000000 869 86.5380 861 1669 1 chr5D.!!$R2 808
4 TraesCS5D01G490300 chr5D 525242738 525243283 545 True 418.000000 418 81.8670 1001 1512 1 chr5D.!!$R6 511
5 TraesCS5D01G490300 chr5D 525154295 525155547 1252 True 359.666667 643 90.1540 285 1683 3 chr5D.!!$R8 1398
6 TraesCS5D01G490300 chr1D 40176510 40177328 818 False 1391.000000 1391 97.3140 1682 2500 1 chr1D.!!$F1 818
7 TraesCS5D01G490300 chr6D 429208790 429209609 819 True 1371.000000 1371 96.8290 1682 2501 1 chr6D.!!$R1 819
8 TraesCS5D01G490300 chr6D 430324950 430325769 819 False 1349.000000 1349 96.3410 1682 2501 1 chr6D.!!$F2 819
9 TraesCS5D01G490300 chr6D 367428558 367429377 819 False 1299.000000 1299 95.2440 1682 2501 1 chr6D.!!$F1 819
10 TraesCS5D01G490300 chr2D 436027936 436028758 822 False 1371.000000 1371 96.7190 1679 2501 1 chr2D.!!$F1 822
11 TraesCS5D01G490300 chr7D 543913773 543914595 822 True 1308.000000 1308 95.3830 1681 2501 1 chr7D.!!$R2 820
12 TraesCS5D01G490300 chr7D 40387420 40388241 821 True 1286.000000 1286 94.8910 1680 2501 1 chr7D.!!$R1 821
13 TraesCS5D01G490300 chr5A 651522330 651523155 825 True 920.000000 920 86.8910 834 1681 1 chr5A.!!$R1 847
14 TraesCS5D01G490300 chr5A 651517308 651518136 828 True 402.350000 726 91.1675 860 1681 2 chr5A.!!$R2 821
15 TraesCS5D01G490300 chr5A 651758946 651759448 502 False 366.000000 366 80.5710 997 1502 1 chr5A.!!$F1 505
16 TraesCS5D01G490300 chr5B 659462499 659463462 963 True 861.000000 861 83.4170 712 1675 1 chr5B.!!$R1 963
17 TraesCS5D01G490300 chr5B 659471048 659475859 4811 True 736.500000 819 83.7420 860 1676 2 chr5B.!!$R4 816
18 TraesCS5D01G490300 chr5B 659596787 659597333 546 True 385.000000 385 80.6860 1001 1512 1 chr5B.!!$R3 511
19 TraesCS5D01G490300 chr5B 659704427 659704928 501 False 381.000000 381 81.1070 997 1501 1 chr5B.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.031721 GAGTCCAAGTTCGTCCACGT 59.968 55.0 0.0 0.0 40.8 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 6041 0.320374 TTTCGCCGAGGATGACACTT 59.68 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.263597 GACTCGTACGTGCTTACGC 58.736 57.895 16.05 0.00 43.72 4.42
19 20 0.453282 GACTCGTACGTGCTTACGCA 60.453 55.000 16.05 0.00 43.72 5.24
33 34 4.277239 CGCAATCGTGACCCTCAA 57.723 55.556 0.00 0.00 0.00 3.02
34 35 1.787847 CGCAATCGTGACCCTCAAC 59.212 57.895 0.00 0.00 0.00 3.18
35 36 1.787847 GCAATCGTGACCCTCAACG 59.212 57.895 0.00 0.00 0.00 4.10
36 37 1.787847 CAATCGTGACCCTCAACGC 59.212 57.895 0.00 0.00 0.00 4.84
37 38 1.375523 AATCGTGACCCTCAACGCC 60.376 57.895 0.00 0.00 0.00 5.68
38 39 2.107041 AATCGTGACCCTCAACGCCA 62.107 55.000 0.00 0.00 0.00 5.69
39 40 2.107041 ATCGTGACCCTCAACGCCAA 62.107 55.000 0.00 0.00 0.00 4.52
40 41 2.317609 CGTGACCCTCAACGCCAAG 61.318 63.158 0.00 0.00 0.00 3.61
41 42 1.966451 GTGACCCTCAACGCCAAGG 60.966 63.158 0.00 0.00 0.00 3.61
42 43 3.056328 GACCCTCAACGCCAAGGC 61.056 66.667 0.00 0.00 37.85 4.35
43 44 3.553095 GACCCTCAACGCCAAGGCT 62.553 63.158 9.73 0.00 39.32 4.58
44 45 2.747855 CCCTCAACGCCAAGGCTC 60.748 66.667 9.73 0.00 39.32 4.70
45 46 2.747855 CCTCAACGCCAAGGCTCC 60.748 66.667 9.73 0.00 39.32 4.70
46 47 2.032528 CTCAACGCCAAGGCTCCA 59.967 61.111 9.73 0.00 39.32 3.86
47 48 1.600636 CTCAACGCCAAGGCTCCAA 60.601 57.895 9.73 0.00 39.32 3.53
48 49 1.580845 CTCAACGCCAAGGCTCCAAG 61.581 60.000 9.73 0.00 39.32 3.61
49 50 2.985847 AACGCCAAGGCTCCAAGC 60.986 61.111 9.73 0.00 41.46 4.01
50 51 3.497884 AACGCCAAGGCTCCAAGCT 62.498 57.895 9.73 0.00 41.99 3.74
51 52 3.437795 CGCCAAGGCTCCAAGCTG 61.438 66.667 9.73 0.00 41.99 4.24
52 53 2.034687 GCCAAGGCTCCAAGCTGA 59.965 61.111 3.29 0.00 41.99 4.26
53 54 2.045131 GCCAAGGCTCCAAGCTGAG 61.045 63.158 3.29 0.00 41.99 3.35
54 55 1.681666 CCAAGGCTCCAAGCTGAGA 59.318 57.895 5.28 0.00 41.99 3.27
55 56 0.676151 CCAAGGCTCCAAGCTGAGAC 60.676 60.000 5.28 1.95 41.99 3.36
56 57 0.676151 CAAGGCTCCAAGCTGAGACC 60.676 60.000 3.31 5.18 41.64 3.85
57 58 1.130054 AAGGCTCCAAGCTGAGACCA 61.130 55.000 3.31 0.00 41.64 4.02
58 59 1.130054 AGGCTCCAAGCTGAGACCAA 61.130 55.000 3.31 0.00 41.64 3.67
59 60 0.250901 GGCTCCAAGCTGAGACCAAA 60.251 55.000 5.28 0.00 41.99 3.28
60 61 1.615384 GGCTCCAAGCTGAGACCAAAT 60.615 52.381 5.28 0.00 41.99 2.32
61 62 1.471684 GCTCCAAGCTGAGACCAAATG 59.528 52.381 5.28 0.00 38.45 2.32
62 63 1.471684 CTCCAAGCTGAGACCAAATGC 59.528 52.381 0.00 0.00 34.11 3.56
63 64 1.074405 TCCAAGCTGAGACCAAATGCT 59.926 47.619 0.00 0.00 35.30 3.79
64 65 1.201647 CCAAGCTGAGACCAAATGCTG 59.798 52.381 0.00 0.00 33.96 4.41
65 66 2.156917 CAAGCTGAGACCAAATGCTGA 58.843 47.619 0.00 0.00 33.96 4.26
66 67 2.753452 CAAGCTGAGACCAAATGCTGAT 59.247 45.455 0.00 0.00 33.96 2.90
67 68 2.641305 AGCTGAGACCAAATGCTGATC 58.359 47.619 0.00 0.00 32.32 2.92
68 69 1.674962 GCTGAGACCAAATGCTGATCC 59.325 52.381 0.00 0.00 0.00 3.36
69 70 2.942752 GCTGAGACCAAATGCTGATCCA 60.943 50.000 0.00 0.00 0.00 3.41
70 71 3.552875 CTGAGACCAAATGCTGATCCAT 58.447 45.455 0.00 0.00 0.00 3.41
71 72 3.548770 TGAGACCAAATGCTGATCCATC 58.451 45.455 0.00 0.00 0.00 3.51
72 73 3.201487 TGAGACCAAATGCTGATCCATCT 59.799 43.478 0.00 0.00 0.00 2.90
73 74 4.205587 GAGACCAAATGCTGATCCATCTT 58.794 43.478 0.00 0.00 0.00 2.40
74 75 4.607239 AGACCAAATGCTGATCCATCTTT 58.393 39.130 0.00 0.00 0.00 2.52
75 76 5.021458 AGACCAAATGCTGATCCATCTTTT 58.979 37.500 0.00 0.00 0.00 2.27
76 77 5.126707 AGACCAAATGCTGATCCATCTTTTC 59.873 40.000 0.00 0.00 0.00 2.29
77 78 4.142315 ACCAAATGCTGATCCATCTTTTCG 60.142 41.667 0.00 0.00 0.00 3.46
78 79 4.142315 CCAAATGCTGATCCATCTTTTCGT 60.142 41.667 0.00 0.00 0.00 3.85
79 80 4.889832 AATGCTGATCCATCTTTTCGTC 57.110 40.909 0.00 0.00 0.00 4.20
80 81 2.632377 TGCTGATCCATCTTTTCGTCC 58.368 47.619 0.00 0.00 0.00 4.79
81 82 2.027285 TGCTGATCCATCTTTTCGTCCA 60.027 45.455 0.00 0.00 0.00 4.02
82 83 3.009723 GCTGATCCATCTTTTCGTCCAA 58.990 45.455 0.00 0.00 0.00 3.53
83 84 3.064545 GCTGATCCATCTTTTCGTCCAAG 59.935 47.826 0.00 0.00 0.00 3.61
84 85 3.609853 TGATCCATCTTTTCGTCCAAGG 58.390 45.455 0.00 0.00 0.00 3.61
85 86 3.263170 TGATCCATCTTTTCGTCCAAGGA 59.737 43.478 0.00 0.00 0.00 3.36
86 87 4.080356 TGATCCATCTTTTCGTCCAAGGAT 60.080 41.667 0.00 0.00 37.34 3.24
87 88 4.301072 TCCATCTTTTCGTCCAAGGATT 57.699 40.909 0.00 0.00 0.00 3.01
88 89 4.662278 TCCATCTTTTCGTCCAAGGATTT 58.338 39.130 0.00 0.00 0.00 2.17
89 90 4.458989 TCCATCTTTTCGTCCAAGGATTTG 59.541 41.667 0.00 0.00 0.00 2.32
90 91 4.458989 CCATCTTTTCGTCCAAGGATTTGA 59.541 41.667 0.00 0.00 36.36 2.69
91 92 5.126061 CCATCTTTTCGTCCAAGGATTTGAT 59.874 40.000 0.00 0.00 36.36 2.57
92 93 6.350445 CCATCTTTTCGTCCAAGGATTTGATT 60.350 38.462 0.00 0.00 36.36 2.57
93 94 6.648879 TCTTTTCGTCCAAGGATTTGATTT 57.351 33.333 0.00 0.00 36.36 2.17
94 95 7.753309 TCTTTTCGTCCAAGGATTTGATTTA 57.247 32.000 0.00 0.00 36.36 1.40
95 96 7.816640 TCTTTTCGTCCAAGGATTTGATTTAG 58.183 34.615 0.00 0.00 36.36 1.85
96 97 7.447238 TCTTTTCGTCCAAGGATTTGATTTAGT 59.553 33.333 0.00 0.00 36.36 2.24
97 98 7.519032 TTTCGTCCAAGGATTTGATTTAGTT 57.481 32.000 0.00 0.00 36.36 2.24
98 99 7.519032 TTCGTCCAAGGATTTGATTTAGTTT 57.481 32.000 0.00 0.00 36.36 2.66
99 100 8.624367 TTCGTCCAAGGATTTGATTTAGTTTA 57.376 30.769 0.00 0.00 36.36 2.01
100 101 8.036273 TCGTCCAAGGATTTGATTTAGTTTAC 57.964 34.615 0.00 0.00 36.36 2.01
101 102 7.881232 TCGTCCAAGGATTTGATTTAGTTTACT 59.119 33.333 0.00 0.00 36.36 2.24
102 103 8.512138 CGTCCAAGGATTTGATTTAGTTTACTT 58.488 33.333 0.00 0.00 36.36 2.24
103 104 9.626045 GTCCAAGGATTTGATTTAGTTTACTTG 57.374 33.333 0.00 0.00 36.36 3.16
104 105 9.362151 TCCAAGGATTTGATTTAGTTTACTTGT 57.638 29.630 0.00 0.00 36.36 3.16
105 106 9.981114 CCAAGGATTTGATTTAGTTTACTTGTT 57.019 29.630 0.00 0.00 36.36 2.83
114 115 8.342634 TGATTTAGTTTACTTGTTCTTCAGTGC 58.657 33.333 0.00 0.00 0.00 4.40
115 116 7.859325 TTTAGTTTACTTGTTCTTCAGTGCT 57.141 32.000 0.00 0.00 0.00 4.40
116 117 5.993106 AGTTTACTTGTTCTTCAGTGCTC 57.007 39.130 0.00 0.00 0.00 4.26
117 118 5.675538 AGTTTACTTGTTCTTCAGTGCTCT 58.324 37.500 0.00 0.00 0.00 4.09
118 119 5.525378 AGTTTACTTGTTCTTCAGTGCTCTG 59.475 40.000 9.54 9.54 42.54 3.35
119 120 2.843701 ACTTGTTCTTCAGTGCTCTGG 58.156 47.619 15.39 1.14 41.59 3.86
120 121 2.435805 ACTTGTTCTTCAGTGCTCTGGA 59.564 45.455 15.39 6.26 41.59 3.86
121 122 3.118261 ACTTGTTCTTCAGTGCTCTGGAA 60.118 43.478 15.39 9.20 41.59 3.53
122 123 3.117491 TGTTCTTCAGTGCTCTGGAAG 57.883 47.619 15.39 15.59 41.59 3.46
123 124 2.700371 TGTTCTTCAGTGCTCTGGAAGA 59.300 45.455 15.39 17.25 43.69 2.87
124 125 3.063485 GTTCTTCAGTGCTCTGGAAGAC 58.937 50.000 20.42 15.05 38.67 3.01
125 126 1.270826 TCTTCAGTGCTCTGGAAGACG 59.729 52.381 15.39 0.00 38.67 4.18
126 127 0.318441 TTCAGTGCTCTGGAAGACGG 59.682 55.000 15.39 0.00 38.67 4.79
127 128 1.739562 CAGTGCTCTGGAAGACGGC 60.740 63.158 7.92 0.00 38.67 5.68
128 129 2.435059 GTGCTCTGGAAGACGGCC 60.435 66.667 0.00 0.00 38.67 6.13
129 130 4.069232 TGCTCTGGAAGACGGCCG 62.069 66.667 26.86 26.86 38.67 6.13
156 157 4.406173 CTCGCAGCACGGACGACT 62.406 66.667 0.00 0.00 43.89 4.18
157 158 4.400109 TCGCAGCACGGACGACTC 62.400 66.667 0.00 0.00 43.89 3.36
175 176 3.524606 GGCGCGCTACCTGACCTA 61.525 66.667 32.29 0.00 0.00 3.08
176 177 2.278661 GCGCGCTACCTGACCTAC 60.279 66.667 26.67 0.00 0.00 3.18
177 178 2.772691 GCGCGCTACCTGACCTACT 61.773 63.158 26.67 0.00 0.00 2.57
178 179 1.442526 GCGCGCTACCTGACCTACTA 61.443 60.000 26.67 0.00 0.00 1.82
179 180 0.307146 CGCGCTACCTGACCTACTAC 59.693 60.000 5.56 0.00 0.00 2.73
180 181 0.667453 GCGCTACCTGACCTACTACC 59.333 60.000 0.00 0.00 0.00 3.18
181 182 2.020694 GCGCTACCTGACCTACTACCA 61.021 57.143 0.00 0.00 0.00 3.25
182 183 1.674962 CGCTACCTGACCTACTACCAC 59.325 57.143 0.00 0.00 0.00 4.16
183 184 1.674962 GCTACCTGACCTACTACCACG 59.325 57.143 0.00 0.00 0.00 4.94
184 185 2.943199 GCTACCTGACCTACTACCACGT 60.943 54.545 0.00 0.00 0.00 4.49
185 186 1.831580 ACCTGACCTACTACCACGTC 58.168 55.000 0.00 0.00 0.00 4.34
186 187 0.731417 CCTGACCTACTACCACGTCG 59.269 60.000 0.00 0.00 0.00 5.12
187 188 1.676916 CCTGACCTACTACCACGTCGA 60.677 57.143 0.00 0.00 0.00 4.20
188 189 1.396301 CTGACCTACTACCACGTCGAC 59.604 57.143 5.18 5.18 0.00 4.20
189 190 0.371645 GACCTACTACCACGTCGACG 59.628 60.000 34.58 34.58 46.33 5.12
190 191 1.021390 ACCTACTACCACGTCGACGG 61.021 60.000 37.89 26.50 44.95 4.79
191 192 1.061570 CTACTACCACGTCGACGGC 59.938 63.158 37.89 1.64 44.95 5.68
192 193 1.638388 CTACTACCACGTCGACGGCA 61.638 60.000 37.89 20.06 44.95 5.69
193 194 1.911293 TACTACCACGTCGACGGCAC 61.911 60.000 37.89 1.48 44.95 5.01
194 195 3.958822 CTACCACGTCGACGGCACC 62.959 68.421 37.89 0.00 44.95 5.01
225 226 5.330271 GCAAGTGCGAATACATTAGTAGG 57.670 43.478 0.00 0.00 32.86 3.18
226 227 4.318831 GCAAGTGCGAATACATTAGTAGGC 60.319 45.833 0.00 0.00 32.86 3.93
227 228 3.991367 AGTGCGAATACATTAGTAGGCC 58.009 45.455 0.00 0.00 32.86 5.19
228 229 2.729882 GTGCGAATACATTAGTAGGCCG 59.270 50.000 0.00 0.00 32.86 6.13
229 230 2.624364 TGCGAATACATTAGTAGGCCGA 59.376 45.455 0.00 0.00 32.86 5.54
230 231 3.257375 TGCGAATACATTAGTAGGCCGAT 59.743 43.478 0.00 0.00 32.86 4.18
231 232 3.612860 GCGAATACATTAGTAGGCCGATG 59.387 47.826 0.00 0.78 32.86 3.84
232 233 4.617530 GCGAATACATTAGTAGGCCGATGA 60.618 45.833 0.00 0.00 32.86 2.92
233 234 5.096169 CGAATACATTAGTAGGCCGATGAG 58.904 45.833 0.00 0.00 32.86 2.90
234 235 2.821991 ACATTAGTAGGCCGATGAGC 57.178 50.000 0.00 0.00 0.00 4.26
245 246 4.451150 GATGAGCCCGCGGTGACA 62.451 66.667 26.12 19.85 0.00 3.58
246 247 3.740128 GATGAGCCCGCGGTGACAT 62.740 63.158 26.12 23.45 0.00 3.06
247 248 3.740128 ATGAGCCCGCGGTGACATC 62.740 63.158 26.12 14.16 0.00 3.06
248 249 4.451150 GAGCCCGCGGTGACATCA 62.451 66.667 26.12 0.00 0.00 3.07
249 250 4.760047 AGCCCGCGGTGACATCAC 62.760 66.667 26.12 3.27 45.72 3.06
260 261 2.292267 GTGACATCACCATCCATGTCC 58.708 52.381 9.07 0.00 45.73 4.02
261 262 1.212688 TGACATCACCATCCATGTCCC 59.787 52.381 9.07 0.00 45.73 4.46
262 263 1.212688 GACATCACCATCCATGTCCCA 59.787 52.381 1.30 0.00 42.11 4.37
263 264 1.640149 ACATCACCATCCATGTCCCAA 59.360 47.619 0.00 0.00 0.00 4.12
264 265 2.304092 CATCACCATCCATGTCCCAAG 58.696 52.381 0.00 0.00 0.00 3.61
265 266 0.034186 TCACCATCCATGTCCCAAGC 60.034 55.000 0.00 0.00 0.00 4.01
266 267 1.077501 ACCATCCATGTCCCAAGCG 60.078 57.895 0.00 0.00 0.00 4.68
267 268 1.224315 CCATCCATGTCCCAAGCGA 59.776 57.895 0.00 0.00 0.00 4.93
268 269 1.097547 CCATCCATGTCCCAAGCGAC 61.098 60.000 0.00 0.00 0.00 5.19
269 270 1.153369 ATCCATGTCCCAAGCGACG 60.153 57.895 0.00 0.00 35.40 5.12
270 271 1.899437 ATCCATGTCCCAAGCGACGT 61.899 55.000 0.00 0.00 35.40 4.34
271 272 1.671054 CCATGTCCCAAGCGACGTT 60.671 57.895 0.00 0.00 35.40 3.99
272 273 1.497278 CATGTCCCAAGCGACGTTG 59.503 57.895 0.00 0.00 35.40 4.10
273 274 2.325082 ATGTCCCAAGCGACGTTGC 61.325 57.895 20.54 20.54 35.40 4.17
275 276 2.357034 TCCCAAGCGACGTTGCTC 60.357 61.111 29.89 1.11 46.60 4.26
276 277 3.423154 CCCAAGCGACGTTGCTCC 61.423 66.667 29.89 0.31 46.60 4.70
277 278 2.357517 CCAAGCGACGTTGCTCCT 60.358 61.111 29.89 13.52 46.60 3.69
278 279 1.080093 CCAAGCGACGTTGCTCCTA 60.080 57.895 29.89 0.00 46.60 2.94
279 280 1.078759 CCAAGCGACGTTGCTCCTAG 61.079 60.000 29.89 18.78 46.60 3.02
280 281 0.388649 CAAGCGACGTTGCTCCTAGT 60.389 55.000 29.89 11.95 46.60 2.57
281 282 0.317479 AAGCGACGTTGCTCCTAGTT 59.683 50.000 29.89 11.17 46.60 2.24
282 283 1.171308 AGCGACGTTGCTCCTAGTTA 58.829 50.000 24.88 0.00 42.95 2.24
283 284 1.132643 AGCGACGTTGCTCCTAGTTAG 59.867 52.381 24.88 0.00 42.95 2.34
294 295 5.721232 TGCTCCTAGTTAGTTAGTTCTTGC 58.279 41.667 0.00 0.00 0.00 4.01
325 326 0.234884 CTGGTTCGGACAAGTTTCGC 59.765 55.000 0.00 0.00 0.00 4.70
397 398 1.282930 GCGAGTCCAAGTTCGTCCAC 61.283 60.000 0.00 0.00 38.96 4.02
399 400 0.031721 GAGTCCAAGTTCGTCCACGT 59.968 55.000 0.00 0.00 40.80 4.49
429 430 1.953559 CCCGTCCATTACATGTCCTG 58.046 55.000 0.00 0.57 0.00 3.86
486 519 2.849942 TCGCTATGCATGCAAATACCT 58.150 42.857 26.68 9.68 0.00 3.08
511 544 9.216117 CTAGTGTTTTTAGTTACAGCCAAGTAT 57.784 33.333 0.00 0.00 0.00 2.12
522 556 2.231964 CAGCCAAGTATGCAAACCATGT 59.768 45.455 0.00 0.00 35.34 3.21
532 566 3.322369 TGCAAACCATGTACTACTCACG 58.678 45.455 0.00 0.00 0.00 4.35
533 567 2.093783 GCAAACCATGTACTACTCACGC 59.906 50.000 0.00 0.00 0.00 5.34
534 568 2.273370 AACCATGTACTACTCACGCG 57.727 50.000 3.53 3.53 0.00 6.01
535 569 0.454600 ACCATGTACTACTCACGCGG 59.545 55.000 12.47 0.00 0.00 6.46
536 570 0.870307 CCATGTACTACTCACGCGGC 60.870 60.000 12.47 0.00 0.00 6.53
537 571 0.179148 CATGTACTACTCACGCGGCA 60.179 55.000 12.47 0.00 0.00 5.69
539 573 0.109458 TGTACTACTCACGCGGCAAG 60.109 55.000 12.47 7.11 0.00 4.01
540 574 1.153901 TACTACTCACGCGGCAAGC 60.154 57.895 12.47 0.00 43.95 4.01
541 575 2.552585 TACTACTCACGCGGCAAGCC 62.553 60.000 12.47 0.00 44.76 4.35
551 585 2.675075 GGCAAGCCGGCAAGGTAA 60.675 61.111 31.54 0.00 43.70 2.85
552 586 2.052104 GGCAAGCCGGCAAGGTAAT 61.052 57.895 31.54 1.71 43.70 1.89
553 587 1.604147 GGCAAGCCGGCAAGGTAATT 61.604 55.000 31.54 9.43 43.70 1.40
554 588 1.099689 GCAAGCCGGCAAGGTAATTA 58.900 50.000 31.54 0.00 43.70 1.40
555 589 1.202256 GCAAGCCGGCAAGGTAATTAC 60.202 52.381 31.54 7.09 43.70 1.89
556 590 2.365582 CAAGCCGGCAAGGTAATTACT 58.634 47.619 31.54 0.00 43.70 2.24
557 591 2.038387 AGCCGGCAAGGTAATTACTG 57.962 50.000 31.54 7.87 43.70 2.74
559 593 1.680860 GCCGGCAAGGTAATTACTGGT 60.681 52.381 24.80 0.00 43.70 4.00
560 594 2.014128 CCGGCAAGGTAATTACTGGTG 58.986 52.381 15.05 11.22 34.51 4.17
561 595 1.400494 CGGCAAGGTAATTACTGGTGC 59.600 52.381 20.77 20.77 0.00 5.01
562 596 2.723273 GGCAAGGTAATTACTGGTGCT 58.277 47.619 24.51 10.45 32.13 4.40
563 597 2.683362 GGCAAGGTAATTACTGGTGCTC 59.317 50.000 24.51 16.72 32.13 4.26
564 598 2.351726 GCAAGGTAATTACTGGTGCTCG 59.648 50.000 21.24 3.19 0.00 5.03
565 599 3.596214 CAAGGTAATTACTGGTGCTCGT 58.404 45.455 15.05 0.00 0.00 4.18
567 601 4.281898 AGGTAATTACTGGTGCTCGTTT 57.718 40.909 15.05 0.00 0.00 3.60
568 602 4.648651 AGGTAATTACTGGTGCTCGTTTT 58.351 39.130 15.05 0.00 0.00 2.43
570 604 6.232692 AGGTAATTACTGGTGCTCGTTTTTA 58.767 36.000 15.05 0.00 0.00 1.52
571 605 6.370718 AGGTAATTACTGGTGCTCGTTTTTAG 59.629 38.462 15.05 0.00 0.00 1.85
572 606 5.622770 AATTACTGGTGCTCGTTTTTAGG 57.377 39.130 0.00 0.00 0.00 2.69
573 607 1.892209 ACTGGTGCTCGTTTTTAGGG 58.108 50.000 0.00 0.00 0.00 3.53
574 608 1.165270 CTGGTGCTCGTTTTTAGGGG 58.835 55.000 0.00 0.00 0.00 4.79
575 609 0.891904 TGGTGCTCGTTTTTAGGGGC 60.892 55.000 0.00 0.00 0.00 5.80
576 610 0.891904 GGTGCTCGTTTTTAGGGGCA 60.892 55.000 0.00 0.00 0.00 5.36
577 611 0.240145 GTGCTCGTTTTTAGGGGCAC 59.760 55.000 7.03 7.03 42.04 5.01
578 612 0.179015 TGCTCGTTTTTAGGGGCACA 60.179 50.000 0.00 0.00 0.00 4.57
579 613 0.240145 GCTCGTTTTTAGGGGCACAC 59.760 55.000 0.00 0.00 0.00 3.82
580 614 0.515564 CTCGTTTTTAGGGGCACACG 59.484 55.000 0.00 0.00 0.00 4.49
581 615 0.885596 TCGTTTTTAGGGGCACACGG 60.886 55.000 0.00 0.00 0.00 4.94
582 616 1.167781 CGTTTTTAGGGGCACACGGT 61.168 55.000 0.00 0.00 0.00 4.83
583 617 0.312729 GTTTTTAGGGGCACACGGTG 59.687 55.000 6.58 6.58 36.51 4.94
584 618 0.183014 TTTTTAGGGGCACACGGTGA 59.817 50.000 16.29 0.00 35.23 4.02
585 619 0.402504 TTTTAGGGGCACACGGTGAT 59.597 50.000 16.29 0.00 35.23 3.06
586 620 0.035820 TTTAGGGGCACACGGTGATC 60.036 55.000 16.29 5.53 35.23 2.92
587 621 2.233605 TTAGGGGCACACGGTGATCG 62.234 60.000 16.29 3.95 45.88 3.69
596 630 2.485582 CGGTGATCGTCGAGCACT 59.514 61.111 34.46 4.62 46.49 4.40
597 631 1.154016 CGGTGATCGTCGAGCACTT 60.154 57.895 34.46 4.22 46.49 3.16
598 632 0.098200 CGGTGATCGTCGAGCACTTA 59.902 55.000 34.46 3.89 46.49 2.24
599 633 1.828832 GGTGATCGTCGAGCACTTAG 58.171 55.000 34.46 0.00 46.49 2.18
600 634 1.132643 GGTGATCGTCGAGCACTTAGT 59.867 52.381 34.46 1.91 46.49 2.24
601 635 2.415625 GGTGATCGTCGAGCACTTAGTT 60.416 50.000 34.46 1.15 46.49 2.24
602 636 3.243336 GTGATCGTCGAGCACTTAGTTT 58.757 45.455 30.71 0.00 44.30 2.66
603 637 4.409570 GTGATCGTCGAGCACTTAGTTTA 58.590 43.478 30.71 0.00 44.30 2.01
604 638 4.262510 GTGATCGTCGAGCACTTAGTTTAC 59.737 45.833 30.71 6.32 44.30 2.01
605 639 4.155462 TGATCGTCGAGCACTTAGTTTACT 59.845 41.667 9.51 0.00 0.00 2.24
606 640 4.494350 TCGTCGAGCACTTAGTTTACTT 57.506 40.909 0.00 0.00 0.00 2.24
607 641 5.611796 TCGTCGAGCACTTAGTTTACTTA 57.388 39.130 0.00 0.00 0.00 2.24
608 642 5.385617 TCGTCGAGCACTTAGTTTACTTAC 58.614 41.667 0.00 0.00 0.00 2.34
609 643 5.180117 TCGTCGAGCACTTAGTTTACTTACT 59.820 40.000 0.00 0.00 0.00 2.24
610 644 5.507527 CGTCGAGCACTTAGTTTACTTACTC 59.492 44.000 0.00 0.00 0.00 2.59
611 645 5.799435 GTCGAGCACTTAGTTTACTTACTCC 59.201 44.000 0.00 0.00 0.00 3.85
612 646 5.709164 TCGAGCACTTAGTTTACTTACTCCT 59.291 40.000 0.00 0.00 0.00 3.69
613 647 6.881065 TCGAGCACTTAGTTTACTTACTCCTA 59.119 38.462 0.00 0.00 0.00 2.94
614 648 6.966066 CGAGCACTTAGTTTACTTACTCCTAC 59.034 42.308 0.00 0.00 0.00 3.18
615 649 7.361542 CGAGCACTTAGTTTACTTACTCCTACA 60.362 40.741 0.00 0.00 0.00 2.74
616 650 8.363761 AGCACTTAGTTTACTTACTCCTACAT 57.636 34.615 0.00 0.00 0.00 2.29
617 651 9.471702 AGCACTTAGTTTACTTACTCCTACATA 57.528 33.333 0.00 0.00 0.00 2.29
629 663 8.871125 ACTTACTCCTACATATAATCCCAACTG 58.129 37.037 0.00 0.00 0.00 3.16
630 664 6.115448 ACTCCTACATATAATCCCAACTGC 57.885 41.667 0.00 0.00 0.00 4.40
631 665 5.147330 TCCTACATATAATCCCAACTGCG 57.853 43.478 0.00 0.00 0.00 5.18
632 666 3.684788 CCTACATATAATCCCAACTGCGC 59.315 47.826 0.00 0.00 0.00 6.09
633 667 3.207265 ACATATAATCCCAACTGCGCA 57.793 42.857 10.98 10.98 0.00 6.09
634 668 2.878406 ACATATAATCCCAACTGCGCAC 59.122 45.455 5.66 0.00 0.00 5.34
635 669 3.141398 CATATAATCCCAACTGCGCACT 58.859 45.455 5.66 0.00 0.00 4.40
636 670 1.382522 ATAATCCCAACTGCGCACTG 58.617 50.000 5.66 6.91 0.00 3.66
637 671 1.305219 TAATCCCAACTGCGCACTGC 61.305 55.000 5.66 0.00 46.70 4.40
638 672 3.557903 ATCCCAACTGCGCACTGCT 62.558 57.895 5.66 0.00 46.63 4.24
639 673 3.730761 CCCAACTGCGCACTGCTC 61.731 66.667 5.66 0.00 46.63 4.26
640 674 4.081030 CCAACTGCGCACTGCTCG 62.081 66.667 5.66 0.00 46.63 5.03
641 675 4.081030 CAACTGCGCACTGCTCGG 62.081 66.667 5.66 0.00 46.63 4.63
642 676 4.609018 AACTGCGCACTGCTCGGT 62.609 61.111 5.66 0.00 46.63 4.69
643 677 3.220999 AACTGCGCACTGCTCGGTA 62.221 57.895 5.66 0.00 46.63 4.02
644 678 2.432456 CTGCGCACTGCTCGGTAA 60.432 61.111 5.66 0.00 46.63 2.85
645 679 2.432456 TGCGCACTGCTCGGTAAG 60.432 61.111 5.66 0.00 46.63 2.34
646 680 2.432628 GCGCACTGCTCGGTAAGT 60.433 61.111 0.30 0.00 41.73 2.24
647 681 1.153901 GCGCACTGCTCGGTAAGTA 60.154 57.895 0.30 0.00 41.73 2.24
648 682 0.734942 GCGCACTGCTCGGTAAGTAA 60.735 55.000 0.30 0.00 41.73 2.24
649 683 1.705256 CGCACTGCTCGGTAAGTAAA 58.295 50.000 0.00 0.00 0.00 2.01
650 684 2.268298 CGCACTGCTCGGTAAGTAAAT 58.732 47.619 0.00 0.00 0.00 1.40
651 685 2.671396 CGCACTGCTCGGTAAGTAAATT 59.329 45.455 0.00 0.00 0.00 1.82
652 686 3.483574 CGCACTGCTCGGTAAGTAAATTG 60.484 47.826 0.00 0.00 0.00 2.32
653 687 3.435671 GCACTGCTCGGTAAGTAAATTGT 59.564 43.478 0.00 0.00 0.00 2.71
654 688 4.628333 GCACTGCTCGGTAAGTAAATTGTA 59.372 41.667 0.00 0.00 0.00 2.41
655 689 5.220416 GCACTGCTCGGTAAGTAAATTGTAG 60.220 44.000 0.00 0.00 0.00 2.74
656 690 5.291128 CACTGCTCGGTAAGTAAATTGTAGG 59.709 44.000 0.00 0.00 0.00 3.18
657 691 4.186159 TGCTCGGTAAGTAAATTGTAGGC 58.814 43.478 0.00 0.00 0.00 3.93
658 692 3.244579 GCTCGGTAAGTAAATTGTAGGCG 59.755 47.826 0.00 0.00 0.00 5.52
659 693 3.784338 TCGGTAAGTAAATTGTAGGCGG 58.216 45.455 0.00 0.00 0.00 6.13
660 694 3.195396 TCGGTAAGTAAATTGTAGGCGGT 59.805 43.478 0.00 0.00 0.00 5.68
661 695 3.307782 CGGTAAGTAAATTGTAGGCGGTG 59.692 47.826 0.00 0.00 0.00 4.94
662 696 3.064408 GGTAAGTAAATTGTAGGCGGTGC 59.936 47.826 0.00 0.00 0.00 5.01
673 707 2.819595 GCGGTGCCGTGTCATCAT 60.820 61.111 12.46 0.00 42.09 2.45
674 708 2.813179 GCGGTGCCGTGTCATCATC 61.813 63.158 12.46 0.00 42.09 2.92
675 709 1.447663 CGGTGCCGTGTCATCATCA 60.448 57.895 1.93 0.00 34.35 3.07
676 710 1.018752 CGGTGCCGTGTCATCATCAA 61.019 55.000 1.93 0.00 34.35 2.57
677 711 1.382522 GGTGCCGTGTCATCATCAAT 58.617 50.000 0.00 0.00 0.00 2.57
678 712 2.560504 GGTGCCGTGTCATCATCAATA 58.439 47.619 0.00 0.00 0.00 1.90
679 713 3.141398 GGTGCCGTGTCATCATCAATAT 58.859 45.455 0.00 0.00 0.00 1.28
680 714 4.314961 GGTGCCGTGTCATCATCAATATA 58.685 43.478 0.00 0.00 0.00 0.86
681 715 4.389992 GGTGCCGTGTCATCATCAATATAG 59.610 45.833 0.00 0.00 0.00 1.31
682 716 4.991056 GTGCCGTGTCATCATCAATATAGT 59.009 41.667 0.00 0.00 0.00 2.12
683 717 5.466728 GTGCCGTGTCATCATCAATATAGTT 59.533 40.000 0.00 0.00 0.00 2.24
684 718 5.696270 TGCCGTGTCATCATCAATATAGTTC 59.304 40.000 0.00 0.00 0.00 3.01
685 719 5.696270 GCCGTGTCATCATCAATATAGTTCA 59.304 40.000 0.00 0.00 0.00 3.18
686 720 6.202762 GCCGTGTCATCATCAATATAGTTCAA 59.797 38.462 0.00 0.00 0.00 2.69
687 721 7.095060 GCCGTGTCATCATCAATATAGTTCAAT 60.095 37.037 0.00 0.00 0.00 2.57
688 722 9.423061 CCGTGTCATCATCAATATAGTTCAATA 57.577 33.333 0.00 0.00 0.00 1.90
699 733 9.310449 TCAATATAGTTCAATACTACTCCCTCC 57.690 37.037 0.00 0.00 41.99 4.30
700 734 7.941431 ATATAGTTCAATACTACTCCCTCCG 57.059 40.000 0.00 0.00 41.99 4.63
701 735 3.978610 AGTTCAATACTACTCCCTCCGT 58.021 45.455 0.00 0.00 34.56 4.69
702 736 3.952967 AGTTCAATACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 34.56 4.79
703 737 2.941480 TCAATACTACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
704 738 2.512896 TCAATACTACTCCCTCCGTCCT 59.487 50.000 0.00 0.00 0.00 3.85
705 739 3.718434 TCAATACTACTCCCTCCGTCCTA 59.282 47.826 0.00 0.00 0.00 2.94
706 740 4.073549 CAATACTACTCCCTCCGTCCTAG 58.926 52.174 0.00 0.00 0.00 3.02
707 741 1.594129 ACTACTCCCTCCGTCCTAGT 58.406 55.000 0.00 0.00 0.00 2.57
708 742 2.769209 ACTACTCCCTCCGTCCTAGTA 58.231 52.381 0.00 0.00 0.00 1.82
709 743 2.437651 ACTACTCCCTCCGTCCTAGTAC 59.562 54.545 0.00 0.00 0.00 2.73
710 744 1.293062 ACTCCCTCCGTCCTAGTACA 58.707 55.000 0.00 0.00 0.00 2.90
721 755 7.325660 TCCGTCCTAGTACATAGTTTACTTG 57.674 40.000 0.00 0.00 31.99 3.16
740 774 0.912486 GGGGTGGAGTAGATTGCTGT 59.088 55.000 0.00 0.00 0.00 4.40
747 781 4.276183 GTGGAGTAGATTGCTGTATCTCGA 59.724 45.833 0.00 0.00 36.34 4.04
770 804 1.126079 CTTTTCAGCTGCAGCAAACG 58.874 50.000 38.24 23.70 45.16 3.60
790 824 3.127589 CGAAATGGTGGTTTTGTTTCCC 58.872 45.455 0.00 0.00 0.00 3.97
818 854 2.158726 ACCAACTTGACACCCACGTAAT 60.159 45.455 0.00 0.00 0.00 1.89
839 875 4.027674 TGTAATTAAGCTCCACCAAGCA 57.972 40.909 0.00 0.00 45.00 3.91
912 5009 2.611518 ACATTCCTTCTCGCTTCTTCG 58.388 47.619 0.00 0.00 0.00 3.79
950 5047 4.182433 GCTGTGGGAGCCTAGCCC 62.182 72.222 0.00 0.00 46.22 5.19
951 5048 2.366167 CTGTGGGAGCCTAGCCCT 60.366 66.667 5.61 0.00 46.19 5.19
952 5049 1.075226 CTGTGGGAGCCTAGCCCTA 60.075 63.158 5.61 0.00 46.19 3.53
953 5050 1.075226 TGTGGGAGCCTAGCCCTAG 60.075 63.158 5.61 0.00 46.19 3.02
954 5051 2.122813 TGGGAGCCTAGCCCTAGC 60.123 66.667 5.61 0.00 46.19 3.42
978 5078 2.203029 GGACGGGAAATCGAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
1017 5117 0.259647 CCATGGGAGCTGGGATGAAA 59.740 55.000 2.85 0.00 0.00 2.69
1021 5121 1.377202 GGAGCTGGGATGAAACGCA 60.377 57.895 0.00 0.00 0.00 5.24
1039 5139 2.837291 CGAGGGAGGAGGAGCCAG 60.837 72.222 0.00 0.00 40.02 4.85
1071 5177 3.303189 CTGTCCCTCAGCACGGAT 58.697 61.111 0.00 0.00 37.36 4.18
1072 5178 1.142748 CTGTCCCTCAGCACGGATC 59.857 63.158 0.00 0.00 37.36 3.36
1104 5228 1.208358 CGTAACGTCAGCCGACTCA 59.792 57.895 0.00 0.00 40.23 3.41
1291 5427 2.124983 TCGCCAGAGCCATCAAGC 60.125 61.111 0.00 0.00 34.57 4.01
1541 5734 5.469084 GGAAGACACATACGTTTTCTTTCCT 59.531 40.000 0.00 0.00 32.19 3.36
1542 5735 6.017357 GGAAGACACATACGTTTTCTTTCCTT 60.017 38.462 0.00 0.00 32.19 3.36
1543 5736 7.172019 GGAAGACACATACGTTTTCTTTCCTTA 59.828 37.037 0.00 0.00 32.19 2.69
1581 5848 8.712363 GTGCGTGAATAGACATGTAAATATGAT 58.288 33.333 0.00 0.00 0.00 2.45
1619 5897 7.117236 GGCCGATCTTGTAATTACGAATTCATA 59.883 37.037 10.92 0.00 32.38 2.15
1620 5898 8.162880 GCCGATCTTGTAATTACGAATTCATAG 58.837 37.037 10.92 0.00 32.38 2.23
1767 6049 1.708341 AAGCCTTTGCCAAGTGTCAT 58.292 45.000 0.00 0.00 38.69 3.06
1807 6089 2.417787 GGCGTACACCTCTTCGGTAAAT 60.418 50.000 0.00 0.00 46.94 1.40
1950 6234 3.256960 GACCAGGGGAACAGGCCA 61.257 66.667 5.01 0.00 0.00 5.36
1970 6254 4.081050 GGCCTTCTTTGCCGAGTT 57.919 55.556 0.00 0.00 39.48 3.01
2214 6498 0.244994 GACACGTGTCAGCTCCTGAT 59.755 55.000 37.16 5.16 42.73 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.787847 GTTGAGGGTCACGATTGCG 59.212 57.895 0.00 0.00 44.79 4.85
17 18 1.787847 CGTTGAGGGTCACGATTGC 59.212 57.895 0.00 0.00 0.00 3.56
18 19 1.635663 GGCGTTGAGGGTCACGATTG 61.636 60.000 0.00 0.00 0.00 2.67
19 20 1.375523 GGCGTTGAGGGTCACGATT 60.376 57.895 0.00 0.00 0.00 3.34
20 21 2.107041 TTGGCGTTGAGGGTCACGAT 62.107 55.000 0.00 0.00 0.00 3.73
21 22 2.709125 CTTGGCGTTGAGGGTCACGA 62.709 60.000 0.00 0.00 0.00 4.35
22 23 2.280524 TTGGCGTTGAGGGTCACG 60.281 61.111 0.00 0.00 0.00 4.35
23 24 1.966451 CCTTGGCGTTGAGGGTCAC 60.966 63.158 0.00 0.00 0.00 3.67
24 25 2.429930 CCTTGGCGTTGAGGGTCA 59.570 61.111 0.00 0.00 0.00 4.02
25 26 3.056328 GCCTTGGCGTTGAGGGTC 61.056 66.667 0.00 0.00 33.52 4.46
26 27 3.553095 GAGCCTTGGCGTTGAGGGT 62.553 63.158 5.95 4.82 45.86 4.34
27 28 2.747855 GAGCCTTGGCGTTGAGGG 60.748 66.667 5.95 0.00 33.52 4.30
28 29 2.747855 GGAGCCTTGGCGTTGAGG 60.748 66.667 5.95 0.00 36.09 3.86
29 30 1.580845 CTTGGAGCCTTGGCGTTGAG 61.581 60.000 5.95 0.55 0.00 3.02
30 31 1.600636 CTTGGAGCCTTGGCGTTGA 60.601 57.895 5.95 0.00 0.00 3.18
31 32 2.956987 CTTGGAGCCTTGGCGTTG 59.043 61.111 5.95 0.00 0.00 4.10
32 33 2.985847 GCTTGGAGCCTTGGCGTT 60.986 61.111 5.95 0.00 34.48 4.84
33 34 3.958860 AGCTTGGAGCCTTGGCGT 61.959 61.111 5.95 0.00 43.77 5.68
34 35 3.437795 CAGCTTGGAGCCTTGGCG 61.438 66.667 5.95 0.00 43.77 5.69
35 36 2.034687 TCAGCTTGGAGCCTTGGC 59.965 61.111 2.97 2.97 43.77 4.52
36 37 0.676151 GTCTCAGCTTGGAGCCTTGG 60.676 60.000 0.00 0.00 43.77 3.61
37 38 0.676151 GGTCTCAGCTTGGAGCCTTG 60.676 60.000 4.15 0.00 43.77 3.61
38 39 1.130054 TGGTCTCAGCTTGGAGCCTT 61.130 55.000 10.97 0.00 43.77 4.35
39 40 1.130054 TTGGTCTCAGCTTGGAGCCT 61.130 55.000 10.97 0.00 43.77 4.58
40 41 0.250901 TTTGGTCTCAGCTTGGAGCC 60.251 55.000 10.97 9.02 43.77 4.70
41 42 1.471684 CATTTGGTCTCAGCTTGGAGC 59.528 52.381 7.65 7.65 42.84 4.70
42 43 1.471684 GCATTTGGTCTCAGCTTGGAG 59.528 52.381 0.00 0.00 36.21 3.86
43 44 1.074405 AGCATTTGGTCTCAGCTTGGA 59.926 47.619 0.00 0.00 29.98 3.53
44 45 1.201647 CAGCATTTGGTCTCAGCTTGG 59.798 52.381 0.00 0.00 32.35 3.61
45 46 2.156917 TCAGCATTTGGTCTCAGCTTG 58.843 47.619 0.00 0.00 32.35 4.01
46 47 2.574006 TCAGCATTTGGTCTCAGCTT 57.426 45.000 0.00 0.00 32.35 3.74
47 48 2.641305 GATCAGCATTTGGTCTCAGCT 58.359 47.619 0.00 0.00 33.91 4.24
48 49 1.674962 GGATCAGCATTTGGTCTCAGC 59.325 52.381 0.00 0.00 37.10 4.26
49 50 2.995283 TGGATCAGCATTTGGTCTCAG 58.005 47.619 0.00 0.00 37.10 3.35
50 51 3.201487 AGATGGATCAGCATTTGGTCTCA 59.799 43.478 0.00 0.00 37.10 3.27
51 52 3.818180 AGATGGATCAGCATTTGGTCTC 58.182 45.455 0.00 0.00 37.10 3.36
52 53 3.947612 AGATGGATCAGCATTTGGTCT 57.052 42.857 0.00 0.00 37.10 3.85
53 54 4.996788 AAAGATGGATCAGCATTTGGTC 57.003 40.909 0.00 0.00 36.11 4.02
54 55 4.142315 CGAAAAGATGGATCAGCATTTGGT 60.142 41.667 0.00 0.00 0.00 3.67
55 56 4.142315 ACGAAAAGATGGATCAGCATTTGG 60.142 41.667 0.00 0.00 0.00 3.28
56 57 4.990257 ACGAAAAGATGGATCAGCATTTG 58.010 39.130 0.00 0.00 0.00 2.32
57 58 4.096984 GGACGAAAAGATGGATCAGCATTT 59.903 41.667 0.00 0.00 0.00 2.32
58 59 3.629398 GGACGAAAAGATGGATCAGCATT 59.371 43.478 0.00 0.00 0.00 3.56
59 60 3.209410 GGACGAAAAGATGGATCAGCAT 58.791 45.455 0.00 0.00 0.00 3.79
60 61 2.027285 TGGACGAAAAGATGGATCAGCA 60.027 45.455 0.00 0.00 0.00 4.41
61 62 2.632377 TGGACGAAAAGATGGATCAGC 58.368 47.619 0.00 0.00 0.00 4.26
62 63 3.624861 CCTTGGACGAAAAGATGGATCAG 59.375 47.826 0.00 0.00 0.00 2.90
63 64 3.263170 TCCTTGGACGAAAAGATGGATCA 59.737 43.478 0.00 0.00 0.00 2.92
64 65 3.873910 TCCTTGGACGAAAAGATGGATC 58.126 45.455 0.00 0.00 0.00 3.36
65 66 4.510167 ATCCTTGGACGAAAAGATGGAT 57.490 40.909 0.00 0.00 0.00 3.41
66 67 4.301072 AATCCTTGGACGAAAAGATGGA 57.699 40.909 0.00 0.00 0.00 3.41
67 68 4.458989 TCAAATCCTTGGACGAAAAGATGG 59.541 41.667 0.00 0.00 33.01 3.51
68 69 5.627499 TCAAATCCTTGGACGAAAAGATG 57.373 39.130 0.00 0.00 33.01 2.90
69 70 6.840780 AATCAAATCCTTGGACGAAAAGAT 57.159 33.333 0.00 0.00 33.01 2.40
70 71 6.648879 AAATCAAATCCTTGGACGAAAAGA 57.351 33.333 0.00 0.00 33.01 2.52
71 72 7.593825 ACTAAATCAAATCCTTGGACGAAAAG 58.406 34.615 0.00 0.00 33.01 2.27
72 73 7.519032 ACTAAATCAAATCCTTGGACGAAAA 57.481 32.000 0.00 0.00 33.01 2.29
73 74 7.519032 AACTAAATCAAATCCTTGGACGAAA 57.481 32.000 0.00 0.00 33.01 3.46
74 75 7.519032 AAACTAAATCAAATCCTTGGACGAA 57.481 32.000 0.00 0.00 33.01 3.85
75 76 7.881232 AGTAAACTAAATCAAATCCTTGGACGA 59.119 33.333 0.00 0.00 33.01 4.20
76 77 8.040716 AGTAAACTAAATCAAATCCTTGGACG 57.959 34.615 0.00 0.00 33.01 4.79
77 78 9.626045 CAAGTAAACTAAATCAAATCCTTGGAC 57.374 33.333 0.00 0.00 33.01 4.02
78 79 9.362151 ACAAGTAAACTAAATCAAATCCTTGGA 57.638 29.630 0.00 0.00 33.01 3.53
79 80 9.981114 AACAAGTAAACTAAATCAAATCCTTGG 57.019 29.630 0.00 0.00 33.01 3.61
88 89 8.342634 GCACTGAAGAACAAGTAAACTAAATCA 58.657 33.333 0.00 0.00 0.00 2.57
89 90 8.560374 AGCACTGAAGAACAAGTAAACTAAATC 58.440 33.333 0.00 0.00 0.00 2.17
90 91 8.451908 AGCACTGAAGAACAAGTAAACTAAAT 57.548 30.769 0.00 0.00 0.00 1.40
91 92 7.769044 AGAGCACTGAAGAACAAGTAAACTAAA 59.231 33.333 0.00 0.00 0.00 1.85
92 93 7.224753 CAGAGCACTGAAGAACAAGTAAACTAA 59.775 37.037 5.03 0.00 46.03 2.24
93 94 6.701841 CAGAGCACTGAAGAACAAGTAAACTA 59.298 38.462 5.03 0.00 46.03 2.24
94 95 5.525378 CAGAGCACTGAAGAACAAGTAAACT 59.475 40.000 5.03 0.00 46.03 2.66
95 96 5.277538 CCAGAGCACTGAAGAACAAGTAAAC 60.278 44.000 13.19 0.00 46.03 2.01
96 97 4.816385 CCAGAGCACTGAAGAACAAGTAAA 59.184 41.667 13.19 0.00 46.03 2.01
97 98 4.100963 TCCAGAGCACTGAAGAACAAGTAA 59.899 41.667 13.19 0.00 46.03 2.24
98 99 3.641436 TCCAGAGCACTGAAGAACAAGTA 59.359 43.478 13.19 0.00 46.03 2.24
99 100 2.435805 TCCAGAGCACTGAAGAACAAGT 59.564 45.455 13.19 0.00 46.03 3.16
100 101 3.117491 TCCAGAGCACTGAAGAACAAG 57.883 47.619 13.19 0.00 46.03 3.16
101 102 3.134623 TCTTCCAGAGCACTGAAGAACAA 59.865 43.478 13.19 0.00 46.03 2.83
102 103 2.700371 TCTTCCAGAGCACTGAAGAACA 59.300 45.455 13.19 0.00 46.03 3.18
103 104 3.063485 GTCTTCCAGAGCACTGAAGAAC 58.937 50.000 19.40 13.41 46.03 3.01
104 105 2.288457 CGTCTTCCAGAGCACTGAAGAA 60.288 50.000 19.40 12.38 46.03 2.52
105 106 1.270826 CGTCTTCCAGAGCACTGAAGA 59.729 52.381 13.19 15.07 46.03 2.87
106 107 1.671261 CCGTCTTCCAGAGCACTGAAG 60.671 57.143 13.19 13.24 46.03 3.02
107 108 0.318441 CCGTCTTCCAGAGCACTGAA 59.682 55.000 13.19 4.56 46.03 3.02
108 109 1.967535 CCGTCTTCCAGAGCACTGA 59.032 57.895 13.19 0.00 46.03 3.41
109 110 1.739562 GCCGTCTTCCAGAGCACTG 60.740 63.158 3.89 3.89 43.12 3.66
110 111 2.659610 GCCGTCTTCCAGAGCACT 59.340 61.111 0.00 0.00 0.00 4.40
111 112 2.435059 GGCCGTCTTCCAGAGCAC 60.435 66.667 0.00 0.00 0.00 4.40
112 113 4.069232 CGGCCGTCTTCCAGAGCA 62.069 66.667 19.50 0.00 0.00 4.26
139 140 4.406173 AGTCGTCCGTGCTGCGAG 62.406 66.667 2.97 0.00 44.77 5.03
140 141 4.400109 GAGTCGTCCGTGCTGCGA 62.400 66.667 2.97 0.00 44.77 5.10
158 159 3.524606 TAGGTCAGGTAGCGCGCC 61.525 66.667 30.33 13.91 0.00 6.53
159 160 1.442526 TAGTAGGTCAGGTAGCGCGC 61.443 60.000 26.66 26.66 0.00 6.86
160 161 0.307146 GTAGTAGGTCAGGTAGCGCG 59.693 60.000 0.00 0.00 0.00 6.86
161 162 0.667453 GGTAGTAGGTCAGGTAGCGC 59.333 60.000 0.00 0.00 0.00 5.92
162 163 1.674962 GTGGTAGTAGGTCAGGTAGCG 59.325 57.143 0.00 0.00 0.00 4.26
163 164 1.674962 CGTGGTAGTAGGTCAGGTAGC 59.325 57.143 0.00 0.00 0.00 3.58
164 165 2.941720 GACGTGGTAGTAGGTCAGGTAG 59.058 54.545 0.00 0.00 35.96 3.18
165 166 2.677902 CGACGTGGTAGTAGGTCAGGTA 60.678 54.545 0.00 0.00 35.73 3.08
166 167 1.831580 GACGTGGTAGTAGGTCAGGT 58.168 55.000 0.00 0.00 35.96 4.00
167 168 0.731417 CGACGTGGTAGTAGGTCAGG 59.269 60.000 0.00 0.00 35.73 3.86
168 169 1.396301 GTCGACGTGGTAGTAGGTCAG 59.604 57.143 0.00 0.00 35.73 3.51
169 170 1.442769 GTCGACGTGGTAGTAGGTCA 58.557 55.000 0.00 0.00 35.73 4.02
170 171 0.371645 CGTCGACGTGGTAGTAGGTC 59.628 60.000 29.08 0.00 33.39 3.85
171 172 1.021390 CCGTCGACGTGGTAGTAGGT 61.021 60.000 33.49 0.00 37.74 3.08
172 173 1.717937 CCGTCGACGTGGTAGTAGG 59.282 63.158 33.49 13.35 37.74 3.18
173 174 1.061570 GCCGTCGACGTGGTAGTAG 59.938 63.158 33.49 18.05 37.74 2.57
174 175 1.670730 TGCCGTCGACGTGGTAGTA 60.671 57.895 33.49 16.44 37.74 1.82
175 176 2.979676 TGCCGTCGACGTGGTAGT 60.980 61.111 33.49 0.00 37.74 2.73
176 177 2.503375 GTGCCGTCGACGTGGTAG 60.503 66.667 33.49 20.15 37.74 3.18
177 178 4.041917 GGTGCCGTCGACGTGGTA 62.042 66.667 33.49 17.87 37.74 3.25
190 191 3.503363 CTTGCTAGCTGCCGGTGC 61.503 66.667 17.23 12.59 42.00 5.01
191 192 2.046892 ACTTGCTAGCTGCCGGTG 60.047 61.111 17.23 0.00 42.00 4.94
192 193 2.046892 CACTTGCTAGCTGCCGGT 60.047 61.111 17.23 4.70 42.00 5.28
193 194 3.503363 GCACTTGCTAGCTGCCGG 61.503 66.667 17.23 0.00 42.00 6.13
194 195 3.857854 CGCACTTGCTAGCTGCCG 61.858 66.667 17.23 9.97 42.00 5.69
195 196 1.372087 ATTCGCACTTGCTAGCTGCC 61.372 55.000 17.23 2.06 42.00 4.85
196 197 1.004504 GTATTCGCACTTGCTAGCTGC 60.005 52.381 17.23 16.24 43.25 5.25
197 198 2.270923 TGTATTCGCACTTGCTAGCTG 58.729 47.619 17.23 11.26 39.32 4.24
198 199 2.672961 TGTATTCGCACTTGCTAGCT 57.327 45.000 17.23 0.00 39.32 3.32
199 200 3.951979 AATGTATTCGCACTTGCTAGC 57.048 42.857 8.10 8.10 39.32 3.42
200 201 6.363626 CCTACTAATGTATTCGCACTTGCTAG 59.636 42.308 0.00 0.00 39.32 3.42
201 202 6.213677 CCTACTAATGTATTCGCACTTGCTA 58.786 40.000 0.00 0.00 39.32 3.49
202 203 5.050490 CCTACTAATGTATTCGCACTTGCT 58.950 41.667 0.00 0.00 39.32 3.91
203 204 4.318831 GCCTACTAATGTATTCGCACTTGC 60.319 45.833 0.00 0.00 37.78 4.01
204 205 4.211374 GGCCTACTAATGTATTCGCACTTG 59.789 45.833 0.00 0.00 0.00 3.16
205 206 4.377897 GGCCTACTAATGTATTCGCACTT 58.622 43.478 0.00 0.00 0.00 3.16
206 207 3.552273 CGGCCTACTAATGTATTCGCACT 60.552 47.826 0.00 0.00 0.00 4.40
207 208 2.729882 CGGCCTACTAATGTATTCGCAC 59.270 50.000 0.00 0.00 0.00 5.34
208 209 2.624364 TCGGCCTACTAATGTATTCGCA 59.376 45.455 0.00 0.00 0.00 5.10
209 210 3.293311 TCGGCCTACTAATGTATTCGC 57.707 47.619 0.00 0.00 0.00 4.70
210 211 5.055642 TCATCGGCCTACTAATGTATTCG 57.944 43.478 0.00 0.00 0.00 3.34
211 212 4.865365 GCTCATCGGCCTACTAATGTATTC 59.135 45.833 0.00 0.00 0.00 1.75
212 213 4.822026 GCTCATCGGCCTACTAATGTATT 58.178 43.478 0.00 0.00 0.00 1.89
213 214 4.457834 GCTCATCGGCCTACTAATGTAT 57.542 45.455 0.00 0.00 0.00 2.29
214 215 3.936372 GCTCATCGGCCTACTAATGTA 57.064 47.619 0.00 0.00 0.00 2.29
215 216 2.821991 GCTCATCGGCCTACTAATGT 57.178 50.000 0.00 0.00 0.00 2.71
228 229 3.740128 ATGTCACCGCGGGCTCATC 62.740 63.158 31.76 13.45 0.00 2.92
229 230 3.740128 GATGTCACCGCGGGCTCAT 62.740 63.158 31.76 26.85 0.00 2.90
230 231 4.451150 GATGTCACCGCGGGCTCA 62.451 66.667 31.76 23.51 0.00 4.26
231 232 4.451150 TGATGTCACCGCGGGCTC 62.451 66.667 31.76 18.56 0.00 4.70
232 233 4.760047 GTGATGTCACCGCGGGCT 62.760 66.667 31.76 6.18 40.85 5.19
240 241 2.292267 GGACATGGATGGTGATGTCAC 58.708 52.381 12.75 4.58 46.96 3.67
241 242 1.212688 GGGACATGGATGGTGATGTCA 59.787 52.381 12.75 0.00 46.96 3.58
242 243 1.212688 TGGGACATGGATGGTGATGTC 59.787 52.381 0.00 0.00 45.23 3.06
243 244 1.297968 TGGGACATGGATGGTGATGT 58.702 50.000 0.00 0.00 35.46 3.06
244 245 2.304092 CTTGGGACATGGATGGTGATG 58.696 52.381 0.00 0.00 39.30 3.07
245 246 1.410648 GCTTGGGACATGGATGGTGAT 60.411 52.381 0.00 0.00 39.30 3.06
246 247 0.034186 GCTTGGGACATGGATGGTGA 60.034 55.000 0.00 0.00 39.30 4.02
247 248 1.378882 CGCTTGGGACATGGATGGTG 61.379 60.000 0.00 0.00 39.30 4.17
248 249 1.077501 CGCTTGGGACATGGATGGT 60.078 57.895 0.00 0.00 39.30 3.55
249 250 1.097547 GTCGCTTGGGACATGGATGG 61.098 60.000 12.02 0.00 39.30 3.51
250 251 1.431488 CGTCGCTTGGGACATGGATG 61.431 60.000 16.07 0.00 39.30 3.51
251 252 1.153369 CGTCGCTTGGGACATGGAT 60.153 57.895 16.07 0.00 39.30 3.41
252 253 2.107041 AACGTCGCTTGGGACATGGA 62.107 55.000 16.07 0.00 39.30 3.41
253 254 1.671054 AACGTCGCTTGGGACATGG 60.671 57.895 16.07 4.67 39.30 3.66
254 255 1.497278 CAACGTCGCTTGGGACATG 59.503 57.895 16.07 10.89 39.30 3.21
255 256 2.325082 GCAACGTCGCTTGGGACAT 61.325 57.895 16.07 0.00 39.30 3.06
256 257 2.970324 GCAACGTCGCTTGGGACA 60.970 61.111 16.07 0.00 36.73 4.02
257 258 2.665185 AGCAACGTCGCTTGGGAC 60.665 61.111 0.00 7.62 39.99 4.46
258 259 2.357034 GAGCAACGTCGCTTGGGA 60.357 61.111 0.79 0.00 44.01 4.37
259 260 2.501223 TAGGAGCAACGTCGCTTGGG 62.501 60.000 0.79 0.00 44.01 4.12
260 261 1.078759 CTAGGAGCAACGTCGCTTGG 61.079 60.000 0.79 0.00 44.01 3.61
261 262 0.388649 ACTAGGAGCAACGTCGCTTG 60.389 55.000 0.79 0.00 44.01 4.01
262 263 0.317479 AACTAGGAGCAACGTCGCTT 59.683 50.000 0.79 0.00 44.01 4.68
264 265 1.135460 ACTAACTAGGAGCAACGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
265 266 2.915738 ACTAACTAGGAGCAACGTCG 57.084 50.000 0.00 0.00 0.00 5.12
266 267 5.307926 ACTAACTAACTAGGAGCAACGTC 57.692 43.478 0.00 0.00 0.00 4.34
267 268 5.476254 AGAACTAACTAACTAGGAGCAACGT 59.524 40.000 0.00 0.00 0.00 3.99
268 269 5.952033 AGAACTAACTAACTAGGAGCAACG 58.048 41.667 0.00 0.00 0.00 4.10
269 270 6.091034 GCAAGAACTAACTAACTAGGAGCAAC 59.909 42.308 0.00 0.00 0.00 4.17
270 271 6.164176 GCAAGAACTAACTAACTAGGAGCAA 58.836 40.000 0.00 0.00 0.00 3.91
271 272 5.245301 TGCAAGAACTAACTAACTAGGAGCA 59.755 40.000 0.00 0.00 0.00 4.26
272 273 5.721232 TGCAAGAACTAACTAACTAGGAGC 58.279 41.667 0.00 0.00 0.00 4.70
273 274 6.256757 GCATGCAAGAACTAACTAACTAGGAG 59.743 42.308 14.21 0.00 0.00 3.69
274 275 6.070767 AGCATGCAAGAACTAACTAACTAGGA 60.071 38.462 21.98 0.00 0.00 2.94
275 276 6.036517 CAGCATGCAAGAACTAACTAACTAGG 59.963 42.308 21.98 0.00 0.00 3.02
276 277 6.036517 CCAGCATGCAAGAACTAACTAACTAG 59.963 42.308 21.98 0.00 31.97 2.57
277 278 5.874810 CCAGCATGCAAGAACTAACTAACTA 59.125 40.000 21.98 0.00 31.97 2.24
278 279 4.697352 CCAGCATGCAAGAACTAACTAACT 59.303 41.667 21.98 0.00 31.97 2.24
279 280 4.695455 TCCAGCATGCAAGAACTAACTAAC 59.305 41.667 21.98 0.00 31.97 2.34
280 281 4.695455 GTCCAGCATGCAAGAACTAACTAA 59.305 41.667 21.98 0.00 31.97 2.24
281 282 4.020218 AGTCCAGCATGCAAGAACTAACTA 60.020 41.667 21.98 0.00 31.97 2.24
282 283 3.077359 GTCCAGCATGCAAGAACTAACT 58.923 45.455 21.98 0.00 31.97 2.24
283 284 3.077359 AGTCCAGCATGCAAGAACTAAC 58.923 45.455 21.98 6.20 31.97 2.34
294 295 1.642037 CGAACCAGCAGTCCAGCATG 61.642 60.000 0.00 0.00 36.85 4.06
399 400 4.408821 GGACGGGCTGCATGTGGA 62.409 66.667 0.50 0.00 0.00 4.02
429 430 1.301009 GAGGATCGTTCGGATGCCC 60.301 63.158 0.00 0.00 43.96 5.36
466 467 2.849942 AGGTATTTGCATGCATAGCGA 58.150 42.857 23.37 2.36 33.85 4.93
486 519 8.995220 CATACTTGGCTGTAACTAAAAACACTA 58.005 33.333 0.00 0.00 0.00 2.74
511 544 3.322369 CGTGAGTAGTACATGGTTTGCA 58.678 45.455 2.52 0.00 0.00 4.08
522 556 1.153901 GCTTGCCGCGTGAGTAGTA 60.154 57.895 4.92 0.00 0.00 1.82
534 568 1.604147 AATTACCTTGCCGGCTTGCC 61.604 55.000 29.70 0.75 35.61 4.52
535 569 1.099689 TAATTACCTTGCCGGCTTGC 58.900 50.000 29.70 0.05 35.61 4.01
536 570 2.097466 CAGTAATTACCTTGCCGGCTTG 59.903 50.000 29.70 19.46 35.61 4.01
537 571 2.365582 CAGTAATTACCTTGCCGGCTT 58.634 47.619 29.70 14.18 35.61 4.35
539 573 1.021968 CCAGTAATTACCTTGCCGGC 58.978 55.000 22.73 22.73 35.61 6.13
540 574 2.014128 CACCAGTAATTACCTTGCCGG 58.986 52.381 12.05 0.00 39.35 6.13
541 575 1.400494 GCACCAGTAATTACCTTGCCG 59.600 52.381 17.13 5.44 0.00 5.69
542 576 2.683362 GAGCACCAGTAATTACCTTGCC 59.317 50.000 21.38 13.63 0.00 4.52
543 577 2.351726 CGAGCACCAGTAATTACCTTGC 59.648 50.000 19.05 19.05 0.00 4.01
544 578 3.596214 ACGAGCACCAGTAATTACCTTG 58.404 45.455 12.05 7.94 0.00 3.61
547 581 5.366829 AAAAACGAGCACCAGTAATTACC 57.633 39.130 12.05 0.00 0.00 2.85
549 583 5.644636 CCCTAAAAACGAGCACCAGTAATTA 59.355 40.000 0.00 0.00 0.00 1.40
550 584 4.457949 CCCTAAAAACGAGCACCAGTAATT 59.542 41.667 0.00 0.00 0.00 1.40
551 585 4.007659 CCCTAAAAACGAGCACCAGTAAT 58.992 43.478 0.00 0.00 0.00 1.89
552 586 3.404899 CCCTAAAAACGAGCACCAGTAA 58.595 45.455 0.00 0.00 0.00 2.24
553 587 2.289819 CCCCTAAAAACGAGCACCAGTA 60.290 50.000 0.00 0.00 0.00 2.74
554 588 1.544759 CCCCTAAAAACGAGCACCAGT 60.545 52.381 0.00 0.00 0.00 4.00
555 589 1.165270 CCCCTAAAAACGAGCACCAG 58.835 55.000 0.00 0.00 0.00 4.00
556 590 0.891904 GCCCCTAAAAACGAGCACCA 60.892 55.000 0.00 0.00 0.00 4.17
557 591 0.891904 TGCCCCTAAAAACGAGCACC 60.892 55.000 0.00 0.00 0.00 5.01
559 593 0.179015 TGTGCCCCTAAAAACGAGCA 60.179 50.000 0.00 0.00 0.00 4.26
560 594 0.240145 GTGTGCCCCTAAAAACGAGC 59.760 55.000 0.00 0.00 0.00 5.03
561 595 0.515564 CGTGTGCCCCTAAAAACGAG 59.484 55.000 0.00 0.00 33.03 4.18
562 596 0.885596 CCGTGTGCCCCTAAAAACGA 60.886 55.000 0.00 0.00 33.03 3.85
563 597 1.167781 ACCGTGTGCCCCTAAAAACG 61.168 55.000 0.00 0.00 0.00 3.60
564 598 0.312729 CACCGTGTGCCCCTAAAAAC 59.687 55.000 0.00 0.00 0.00 2.43
565 599 0.183014 TCACCGTGTGCCCCTAAAAA 59.817 50.000 0.00 0.00 32.98 1.94
567 601 0.035820 GATCACCGTGTGCCCCTAAA 60.036 55.000 0.00 0.00 32.98 1.85
568 602 1.600107 GATCACCGTGTGCCCCTAA 59.400 57.895 0.00 0.00 32.98 2.69
570 604 4.082523 CGATCACCGTGTGCCCCT 62.083 66.667 0.00 0.00 32.98 4.79
579 613 0.098200 TAAGTGCTCGACGATCACCG 59.902 55.000 23.94 2.64 45.44 4.94
580 614 1.132643 ACTAAGTGCTCGACGATCACC 59.867 52.381 23.94 9.82 30.11 4.02
581 615 2.546195 ACTAAGTGCTCGACGATCAC 57.454 50.000 21.07 21.07 0.00 3.06
582 616 3.570926 AAACTAAGTGCTCGACGATCA 57.429 42.857 0.00 0.00 0.00 2.92
583 617 4.660105 AGTAAACTAAGTGCTCGACGATC 58.340 43.478 0.00 0.00 0.00 3.69
584 618 4.698583 AGTAAACTAAGTGCTCGACGAT 57.301 40.909 0.00 0.00 0.00 3.73
585 619 4.494350 AAGTAAACTAAGTGCTCGACGA 57.506 40.909 0.00 0.00 0.00 4.20
586 620 5.388944 AGTAAGTAAACTAAGTGCTCGACG 58.611 41.667 0.00 0.00 0.00 5.12
587 621 5.799435 GGAGTAAGTAAACTAAGTGCTCGAC 59.201 44.000 0.00 0.00 0.00 4.20
588 622 5.709164 AGGAGTAAGTAAACTAAGTGCTCGA 59.291 40.000 0.00 0.00 0.00 4.04
589 623 5.952033 AGGAGTAAGTAAACTAAGTGCTCG 58.048 41.667 0.00 0.00 0.00 5.03
590 624 7.824672 TGTAGGAGTAAGTAAACTAAGTGCTC 58.175 38.462 0.00 0.00 0.00 4.26
591 625 7.771927 TGTAGGAGTAAGTAAACTAAGTGCT 57.228 36.000 0.00 0.00 0.00 4.40
603 637 8.871125 CAGTTGGGATTATATGTAGGAGTAAGT 58.129 37.037 0.00 0.00 0.00 2.24
604 638 7.819900 GCAGTTGGGATTATATGTAGGAGTAAG 59.180 40.741 0.00 0.00 0.00 2.34
605 639 7.524863 CGCAGTTGGGATTATATGTAGGAGTAA 60.525 40.741 0.00 0.00 0.00 2.24
606 640 6.071560 CGCAGTTGGGATTATATGTAGGAGTA 60.072 42.308 0.00 0.00 0.00 2.59
607 641 5.279506 CGCAGTTGGGATTATATGTAGGAGT 60.280 44.000 0.00 0.00 0.00 3.85
608 642 5.171476 CGCAGTTGGGATTATATGTAGGAG 58.829 45.833 0.00 0.00 0.00 3.69
609 643 4.562757 GCGCAGTTGGGATTATATGTAGGA 60.563 45.833 0.30 0.00 0.00 2.94
610 644 3.684788 GCGCAGTTGGGATTATATGTAGG 59.315 47.826 0.30 0.00 0.00 3.18
611 645 4.152402 GTGCGCAGTTGGGATTATATGTAG 59.848 45.833 12.22 0.00 0.00 2.74
612 646 4.062293 GTGCGCAGTTGGGATTATATGTA 58.938 43.478 12.22 0.00 0.00 2.29
613 647 2.878406 GTGCGCAGTTGGGATTATATGT 59.122 45.455 12.22 0.00 0.00 2.29
614 648 3.058708 CAGTGCGCAGTTGGGATTATATG 60.059 47.826 16.79 0.00 0.00 1.78
615 649 3.141398 CAGTGCGCAGTTGGGATTATAT 58.859 45.455 16.79 0.00 0.00 0.86
616 650 2.560504 CAGTGCGCAGTTGGGATTATA 58.439 47.619 16.79 0.00 0.00 0.98
617 651 1.382522 CAGTGCGCAGTTGGGATTAT 58.617 50.000 16.79 0.00 0.00 1.28
618 652 1.305219 GCAGTGCGCAGTTGGGATTA 61.305 55.000 16.79 0.00 41.79 1.75
619 653 2.629656 GCAGTGCGCAGTTGGGATT 61.630 57.895 16.79 0.00 41.79 3.01
620 654 3.058160 GCAGTGCGCAGTTGGGAT 61.058 61.111 16.79 0.00 41.79 3.85
621 655 4.254709 AGCAGTGCGCAGTTGGGA 62.255 61.111 16.79 0.00 46.13 4.37
622 656 3.730761 GAGCAGTGCGCAGTTGGG 61.731 66.667 16.79 5.78 46.13 4.12
623 657 4.081030 CGAGCAGTGCGCAGTTGG 62.081 66.667 16.79 6.60 46.13 3.77
624 658 4.081030 CCGAGCAGTGCGCAGTTG 62.081 66.667 16.79 16.05 46.13 3.16
625 659 2.709125 TTACCGAGCAGTGCGCAGTT 62.709 55.000 16.79 1.00 46.13 3.16
626 660 3.220999 TTACCGAGCAGTGCGCAGT 62.221 57.895 12.22 12.72 46.13 4.40
627 661 2.432456 TTACCGAGCAGTGCGCAG 60.432 61.111 12.22 10.17 46.13 5.18
628 662 1.868987 TACTTACCGAGCAGTGCGCA 61.869 55.000 19.19 5.66 46.13 6.09
629 663 0.734942 TTACTTACCGAGCAGTGCGC 60.735 55.000 10.00 9.50 42.91 6.09
630 664 1.705256 TTTACTTACCGAGCAGTGCG 58.295 50.000 10.00 0.00 0.00 5.34
631 665 3.435671 ACAATTTACTTACCGAGCAGTGC 59.564 43.478 7.13 7.13 0.00 4.40
632 666 5.291128 CCTACAATTTACTTACCGAGCAGTG 59.709 44.000 0.00 0.00 0.00 3.66
633 667 5.416947 CCTACAATTTACTTACCGAGCAGT 58.583 41.667 0.00 0.00 0.00 4.40
634 668 4.270325 GCCTACAATTTACTTACCGAGCAG 59.730 45.833 0.00 0.00 0.00 4.24
635 669 4.186159 GCCTACAATTTACTTACCGAGCA 58.814 43.478 0.00 0.00 0.00 4.26
636 670 3.244579 CGCCTACAATTTACTTACCGAGC 59.755 47.826 0.00 0.00 0.00 5.03
637 671 3.800506 CCGCCTACAATTTACTTACCGAG 59.199 47.826 0.00 0.00 0.00 4.63
638 672 3.195396 ACCGCCTACAATTTACTTACCGA 59.805 43.478 0.00 0.00 0.00 4.69
639 673 3.307782 CACCGCCTACAATTTACTTACCG 59.692 47.826 0.00 0.00 0.00 4.02
640 674 3.064408 GCACCGCCTACAATTTACTTACC 59.936 47.826 0.00 0.00 0.00 2.85
641 675 3.064408 GGCACCGCCTACAATTTACTTAC 59.936 47.826 0.00 0.00 46.69 2.34
642 676 3.272581 GGCACCGCCTACAATTTACTTA 58.727 45.455 0.00 0.00 46.69 2.24
643 677 2.089201 GGCACCGCCTACAATTTACTT 58.911 47.619 0.00 0.00 46.69 2.24
644 678 1.746470 GGCACCGCCTACAATTTACT 58.254 50.000 0.00 0.00 46.69 2.24
656 690 2.813179 GATGATGACACGGCACCGC 61.813 63.158 9.43 0.00 44.19 5.68
657 691 1.018752 TTGATGATGACACGGCACCG 61.019 55.000 7.71 7.71 46.03 4.94
658 692 1.382522 ATTGATGATGACACGGCACC 58.617 50.000 0.00 0.00 0.00 5.01
659 693 4.991056 ACTATATTGATGATGACACGGCAC 59.009 41.667 0.00 0.00 0.00 5.01
660 694 5.213891 ACTATATTGATGATGACACGGCA 57.786 39.130 0.00 0.00 0.00 5.69
661 695 5.696270 TGAACTATATTGATGATGACACGGC 59.304 40.000 0.00 0.00 0.00 5.68
662 696 7.713764 TTGAACTATATTGATGATGACACGG 57.286 36.000 0.00 0.00 0.00 4.94
673 707 9.310449 GGAGGGAGTAGTATTGAACTATATTGA 57.690 37.037 0.00 0.00 42.63 2.57
674 708 8.244802 CGGAGGGAGTAGTATTGAACTATATTG 58.755 40.741 0.00 0.00 42.63 1.90
675 709 7.949006 ACGGAGGGAGTAGTATTGAACTATATT 59.051 37.037 0.00 0.00 42.63 1.28
676 710 7.468496 ACGGAGGGAGTAGTATTGAACTATAT 58.532 38.462 0.00 0.00 42.63 0.86
677 711 6.845908 ACGGAGGGAGTAGTATTGAACTATA 58.154 40.000 0.00 0.00 42.63 1.31
678 712 5.703310 ACGGAGGGAGTAGTATTGAACTAT 58.297 41.667 0.00 0.00 42.63 2.12
679 713 5.121380 ACGGAGGGAGTAGTATTGAACTA 57.879 43.478 0.00 0.00 39.80 2.24
680 714 3.952967 GACGGAGGGAGTAGTATTGAACT 59.047 47.826 0.00 0.00 42.62 3.01
681 715 3.067883 GGACGGAGGGAGTAGTATTGAAC 59.932 52.174 0.00 0.00 0.00 3.18
682 716 3.053095 AGGACGGAGGGAGTAGTATTGAA 60.053 47.826 0.00 0.00 0.00 2.69
683 717 2.512896 AGGACGGAGGGAGTAGTATTGA 59.487 50.000 0.00 0.00 0.00 2.57
684 718 2.946785 AGGACGGAGGGAGTAGTATTG 58.053 52.381 0.00 0.00 0.00 1.90
685 719 3.721050 ACTAGGACGGAGGGAGTAGTATT 59.279 47.826 0.00 0.00 0.00 1.89
686 720 3.325605 ACTAGGACGGAGGGAGTAGTAT 58.674 50.000 0.00 0.00 0.00 2.12
687 721 2.769209 ACTAGGACGGAGGGAGTAGTA 58.231 52.381 0.00 0.00 0.00 1.82
688 722 1.594129 ACTAGGACGGAGGGAGTAGT 58.406 55.000 0.00 0.00 0.00 2.73
689 723 2.437281 TGTACTAGGACGGAGGGAGTAG 59.563 54.545 0.00 0.00 0.00 2.57
690 724 2.481441 TGTACTAGGACGGAGGGAGTA 58.519 52.381 0.00 0.00 0.00 2.59
691 725 1.293062 TGTACTAGGACGGAGGGAGT 58.707 55.000 0.00 0.00 0.00 3.85
692 726 2.660670 ATGTACTAGGACGGAGGGAG 57.339 55.000 0.00 0.00 0.00 4.30
693 727 3.051581 ACTATGTACTAGGACGGAGGGA 58.948 50.000 10.09 0.00 0.00 4.20
694 728 3.505480 ACTATGTACTAGGACGGAGGG 57.495 52.381 10.09 0.00 0.00 4.30
695 729 6.060788 AGTAAACTATGTACTAGGACGGAGG 58.939 44.000 10.09 0.00 29.89 4.30
696 730 7.416022 CAAGTAAACTATGTACTAGGACGGAG 58.584 42.308 0.00 2.56 31.48 4.63
697 731 6.319658 CCAAGTAAACTATGTACTAGGACGGA 59.680 42.308 0.00 0.00 31.48 4.69
698 732 6.460676 CCCAAGTAAACTATGTACTAGGACGG 60.461 46.154 0.00 0.00 31.32 4.79
699 733 6.460676 CCCCAAGTAAACTATGTACTAGGACG 60.461 46.154 0.00 0.00 31.32 4.79
700 734 6.382282 ACCCCAAGTAAACTATGTACTAGGAC 59.618 42.308 0.00 0.00 31.32 3.85
701 735 6.381994 CACCCCAAGTAAACTATGTACTAGGA 59.618 42.308 0.00 0.00 31.32 2.94
702 736 6.407752 CCACCCCAAGTAAACTATGTACTAGG 60.408 46.154 0.00 0.00 31.48 3.02
703 737 6.381994 TCCACCCCAAGTAAACTATGTACTAG 59.618 42.308 0.00 0.00 31.48 2.57
704 738 6.262980 TCCACCCCAAGTAAACTATGTACTA 58.737 40.000 0.00 0.00 31.48 1.82
705 739 5.095809 TCCACCCCAAGTAAACTATGTACT 58.904 41.667 0.00 0.00 33.12 2.73
706 740 5.046087 ACTCCACCCCAAGTAAACTATGTAC 60.046 44.000 0.00 0.00 0.00 2.90
707 741 5.095809 ACTCCACCCCAAGTAAACTATGTA 58.904 41.667 0.00 0.00 0.00 2.29
708 742 3.914435 ACTCCACCCCAAGTAAACTATGT 59.086 43.478 0.00 0.00 0.00 2.29
709 743 4.569719 ACTCCACCCCAAGTAAACTATG 57.430 45.455 0.00 0.00 0.00 2.23
710 744 5.596763 TCTACTCCACCCCAAGTAAACTAT 58.403 41.667 0.00 0.00 0.00 2.12
721 755 0.912486 ACAGCAATCTACTCCACCCC 59.088 55.000 0.00 0.00 0.00 4.95
740 774 3.310774 GCAGCTGAAAAGCAATCGAGATA 59.689 43.478 20.43 0.00 37.25 1.98
747 781 0.677288 TGCTGCAGCTGAAAAGCAAT 59.323 45.000 36.61 0.00 42.42 3.56
770 804 4.126437 CTGGGAAACAAAACCACCATTTC 58.874 43.478 0.00 0.00 0.00 2.17
790 824 0.947244 GTGTCAAGTTGGTGAGGCTG 59.053 55.000 2.34 0.00 0.00 4.85
818 854 4.027674 TGCTTGGTGGAGCTTAATTACA 57.972 40.909 0.00 0.00 43.11 2.41
858 897 5.388654 GGGCGGCCTAGTTATATATAGGTA 58.611 45.833 22.87 0.00 40.67 3.08
912 5009 0.667487 TAGCTTGCTGTCGTGTGAGC 60.667 55.000 5.26 0.00 35.65 4.26
947 5044 1.359475 CGTCCTTCGTAGCTAGGGC 59.641 63.158 13.23 4.17 35.15 5.19
948 5045 1.453762 CCCGTCCTTCGTAGCTAGGG 61.454 65.000 13.23 4.91 37.94 3.53
949 5046 0.465097 TCCCGTCCTTCGTAGCTAGG 60.465 60.000 7.12 7.12 37.94 3.02
950 5047 1.386533 TTCCCGTCCTTCGTAGCTAG 58.613 55.000 0.00 0.00 37.94 3.42
951 5048 1.838112 TTTCCCGTCCTTCGTAGCTA 58.162 50.000 0.00 0.00 37.94 3.32
952 5049 1.136500 GATTTCCCGTCCTTCGTAGCT 59.864 52.381 0.00 0.00 37.94 3.32
953 5050 1.568606 GATTTCCCGTCCTTCGTAGC 58.431 55.000 0.00 0.00 37.94 3.58
954 5051 1.402968 TCGATTTCCCGTCCTTCGTAG 59.597 52.381 0.00 0.00 37.94 3.51
955 5052 1.402968 CTCGATTTCCCGTCCTTCGTA 59.597 52.381 0.00 0.00 37.94 3.43
956 5053 0.172803 CTCGATTTCCCGTCCTTCGT 59.827 55.000 0.00 0.00 37.94 3.85
978 5078 3.191162 TGGATTCGCTTGTGGATTTTGAG 59.809 43.478 0.00 0.00 0.00 3.02
1017 5117 4.361971 TCCTCCTCCCTCGTGCGT 62.362 66.667 0.00 0.00 0.00 5.24
1021 5121 3.670629 CTGGCTCCTCCTCCCTCGT 62.671 68.421 0.00 0.00 35.26 4.18
1291 5427 2.016165 GCCGCTGCTTTTTCCGTTG 61.016 57.895 0.00 0.00 33.53 4.10
1428 5605 2.818132 GCCACCTCCTGATCCGAG 59.182 66.667 0.00 0.00 0.00 4.63
1429 5606 3.147595 CGCCACCTCCTGATCCGA 61.148 66.667 0.00 0.00 0.00 4.55
1541 5734 9.575783 TCTATTCACGCACGCATTATATAATAA 57.424 29.630 7.65 0.00 0.00 1.40
1542 5735 9.016623 GTCTATTCACGCACGCATTATATAATA 57.983 33.333 7.65 0.00 0.00 0.98
1543 5736 7.544217 TGTCTATTCACGCACGCATTATATAAT 59.456 33.333 1.91 1.91 0.00 1.28
1581 5848 4.102524 ACAAGATCGGCCAATGAACCTATA 59.897 41.667 2.24 0.00 0.00 1.31
1588 5859 4.509970 CGTAATTACAAGATCGGCCAATGA 59.490 41.667 15.67 0.00 0.00 2.57
1595 5873 8.162880 GCTATGAATTCGTAATTACAAGATCGG 58.837 37.037 15.67 0.00 0.00 4.18
1620 5898 5.349809 ACCGAAACTCTAACAAGCTATAGC 58.650 41.667 17.33 17.33 42.49 2.97
1759 6041 0.320374 TTTCGCCGAGGATGACACTT 59.680 50.000 0.00 0.00 0.00 3.16
1807 6089 0.902984 TGGCTCTCGGCAAACTCCTA 60.903 55.000 0.00 0.00 43.40 2.94
1970 6254 1.878102 GCTCTCTTTGCCGAAAGTGGA 60.878 52.381 0.00 0.00 39.79 4.02
2214 6498 2.601067 TTCGCCTGGTCCCACGTA 60.601 61.111 0.00 0.00 0.00 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.