Multiple sequence alignment - TraesCS5D01G489400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G489400 chr5D 100.000 8655 0 0 1 8655 524500063 524491409 0.000000e+00 15983.0
1 TraesCS5D01G489400 chr5D 92.657 572 41 1 1366 1936 524496852 524496281 0.000000e+00 822.0
2 TraesCS5D01G489400 chr5D 92.657 572 41 1 3212 3783 524498698 524498128 0.000000e+00 822.0
3 TraesCS5D01G489400 chr5D 89.721 574 26 10 2320 2886 524496282 524495735 0.000000e+00 702.0
4 TraesCS5D01G489400 chr5D 89.721 574 26 10 3782 4329 524497744 524497178 0.000000e+00 702.0
5 TraesCS5D01G489400 chr5D 80.901 466 86 3 1989 2451 519436848 519437313 1.780000e-96 364.0
6 TraesCS5D01G489400 chr5D 95.833 216 7 2 2995 3209 524495024 524494810 1.790000e-91 348.0
7 TraesCS5D01G489400 chr5D 95.833 216 7 2 5040 5254 524497069 524496855 1.790000e-91 348.0
8 TraesCS5D01G489400 chr5D 87.086 302 36 2 5353 5653 521863988 521864287 1.080000e-88 339.0
9 TraesCS5D01G489400 chr5D 86.755 302 35 5 5354 5653 504790863 504790565 1.800000e-86 331.0
10 TraesCS5D01G489400 chr5D 97.590 166 0 2 6874 7037 524493027 524493190 1.840000e-71 281.0
11 TraesCS5D01G489400 chr5D 94.079 152 8 1 2833 2984 524495510 524495360 6.760000e-56 230.0
12 TraesCS5D01G489400 chr5D 94.079 152 8 1 4554 4704 524497231 524497080 6.760000e-56 230.0
13 TraesCS5D01G489400 chr5D 78.967 271 41 13 2849 3110 61634583 61634320 4.150000e-38 171.0
14 TraesCS5D01G489400 chr5D 95.283 106 5 0 3678 3783 524492640 524492535 1.490000e-37 169.0
15 TraesCS5D01G489400 chr5D 95.283 106 5 0 7424 7529 524496386 524496281 1.490000e-37 169.0
16 TraesCS5D01G489400 chr5D 92.661 109 8 0 1831 1939 524492640 524492532 3.230000e-34 158.0
17 TraesCS5D01G489400 chr5D 92.661 109 8 0 7424 7532 524498233 524498125 3.230000e-34 158.0
18 TraesCS5D01G489400 chr5D 77.407 270 45 13 2849 3109 504093007 504092745 7.000000e-31 147.0
19 TraesCS5D01G489400 chr5D 91.176 102 5 4 282 383 228069777 228069680 1.520000e-27 135.0
20 TraesCS5D01G489400 chr5D 100.000 45 0 0 6272 6316 524493712 524493668 5.570000e-12 84.2
21 TraesCS5D01G489400 chr5D 85.294 68 7 3 5892 5956 379575744 379575677 5.610000e-07 67.6
22 TraesCS5D01G489400 chr3D 99.022 920 7 2 5960 6878 572164924 572164006 0.000000e+00 1648.0
23 TraesCS5D01G489400 chr3D 97.926 868 14 3 5995 6858 585104062 585103195 0.000000e+00 1500.0
24 TraesCS5D01G489400 chr3D 98.663 374 5 0 7036 7409 572164010 572163637 0.000000e+00 664.0
25 TraesCS5D01G489400 chr3D 94.006 317 19 0 4726 5042 56362592 56362276 1.690000e-131 481.0
26 TraesCS5D01G489400 chr3D 94.007 267 15 1 4292 4558 536423838 536423573 3.760000e-108 403.0
27 TraesCS5D01G489400 chr3D 85.382 301 41 2 5353 5653 356633109 356632812 8.440000e-80 309.0
28 TraesCS5D01G489400 chr3D 85.667 300 36 4 5357 5653 502065760 502065465 8.440000e-80 309.0
29 TraesCS5D01G489400 chr3D 93.000 100 3 4 284 383 135380836 135380741 9.060000e-30 143.0
30 TraesCS5D01G489400 chr3D 93.750 96 3 3 284 379 42630766 42630674 3.260000e-29 141.0
31 TraesCS5D01G489400 chr3D 90.826 109 3 6 283 390 303788456 303788558 1.170000e-28 139.0
32 TraesCS5D01G489400 chr3D 85.714 126 13 4 5040 5164 181443609 181443488 2.540000e-25 128.0
33 TraesCS5D01G489400 chr3D 100.000 45 0 0 6272 6316 572164532 572164488 5.570000e-12 84.2
34 TraesCS5D01G489400 chr5A 93.032 1062 68 3 883 1938 650687962 650686901 0.000000e+00 1546.0
35 TraesCS5D01G489400 chr5A 92.354 824 47 7 7424 8246 650687008 650686200 0.000000e+00 1158.0
36 TraesCS5D01G489400 chr5A 91.608 572 47 1 3212 3783 650687473 650686903 0.000000e+00 789.0
37 TraesCS5D01G489400 chr5A 93.585 530 20 9 369 887 650688512 650687986 0.000000e+00 778.0
38 TraesCS5D01G489400 chr5A 97.561 287 7 0 1 287 650688795 650688509 7.810000e-135 492.0
39 TraesCS5D01G489400 chr5A 81.356 472 74 13 1985 2447 448633382 448632916 1.060000e-98 372.0
40 TraesCS5D01G489400 chr5A 81.522 276 28 13 2849 3112 686507985 686507721 1.140000e-48 206.0
41 TraesCS5D01G489400 chr5A 85.276 163 15 8 4566 4726 595903247 595903402 8.990000e-35 159.0
42 TraesCS5D01G489400 chr5A 84.663 163 17 7 4566 4726 523613866 523613710 1.160000e-33 156.0
43 TraesCS5D01G489400 chr5A 95.604 91 2 2 280 370 698639729 698639641 2.520000e-30 145.0
44 TraesCS5D01G489400 chr2A 96.957 920 23 3 5960 6878 758749571 758748656 0.000000e+00 1539.0
45 TraesCS5D01G489400 chr2A 96.992 532 15 1 6344 6875 8143740 8144270 0.000000e+00 893.0
46 TraesCS5D01G489400 chr2A 93.548 372 9 6 5960 6316 8143421 8143792 2.750000e-149 540.0
47 TraesCS5D01G489400 chr2A 94.062 320 17 1 4726 5043 138922379 138922698 1.310000e-132 484.0
48 TraesCS5D01G489400 chr2A 93.985 266 15 1 4291 4556 575349284 575349020 1.350000e-107 401.0
49 TraesCS5D01G489400 chr2A 91.409 291 11 3 7036 7323 758748660 758748381 3.790000e-103 387.0
50 TraesCS5D01G489400 chr2A 86.039 308 38 5 5349 5653 590545006 590545311 8.380000e-85 326.0
51 TraesCS5D01G489400 chr2A 80.226 354 61 7 7063 7409 385282078 385282429 3.100000e-64 257.0
52 TraesCS5D01G489400 chr2A 82.213 253 22 14 2874 3114 152007390 152007631 6.850000e-46 196.0
53 TraesCS5D01G489400 chr2A 85.535 159 15 8 4570 4726 141240042 141239890 8.990000e-35 159.0
54 TraesCS5D01G489400 chr2A 86.555 119 12 3 5040 5157 756124067 756124182 2.540000e-25 128.0
55 TraesCS5D01G489400 chr2A 86.842 114 11 3 5043 5155 613321705 613321595 3.280000e-24 124.0
56 TraesCS5D01G489400 chr3A 96.757 925 20 3 5960 6875 30761908 30762831 0.000000e+00 1533.0
57 TraesCS5D01G489400 chr3A 93.701 381 8 4 7036 7409 30762830 30763201 2.730000e-154 556.0
58 TraesCS5D01G489400 chr3A 82.781 151 20 6 7903 8051 141045198 141045052 7.050000e-26 130.0
59 TraesCS5D01G489400 chr3A 87.640 89 9 2 8266 8353 648374479 648374566 1.540000e-17 102.0
60 TraesCS5D01G489400 chr3A 100.000 44 0 0 5913 5956 487452053 487452096 2.000000e-11 82.4
61 TraesCS5D01G489400 chr3A 100.000 28 0 0 4250 4277 40689375 40689348 1.600000e-02 52.8
62 TraesCS5D01G489400 chr3A 100.000 28 0 0 4250 4277 40728858 40728831 1.600000e-02 52.8
63 TraesCS5D01G489400 chr3A 100.000 28 0 0 4250 4277 40740136 40740109 1.600000e-02 52.8
64 TraesCS5D01G489400 chr3A 100.000 28 0 0 4250 4277 40795393 40795366 1.600000e-02 52.8
65 TraesCS5D01G489400 chr3A 100.000 28 0 0 4250 4277 40806665 40806638 1.600000e-02 52.8
66 TraesCS5D01G489400 chr4B 96.838 917 24 3 5960 6875 527644966 527645878 0.000000e+00 1528.0
67 TraesCS5D01G489400 chr4B 91.753 291 10 3 7036 7323 527645877 527646156 8.150000e-105 392.0
68 TraesCS5D01G489400 chr4B 82.545 275 26 15 2849 3111 137740680 137740416 1.130000e-53 222.0
69 TraesCS5D01G489400 chr4B 84.906 159 16 7 4570 4726 137740680 137740528 4.180000e-33 154.0
70 TraesCS5D01G489400 chr4B 95.699 93 2 2 278 370 106975948 106975858 1.950000e-31 148.0
71 TraesCS5D01G489400 chr4B 87.500 120 8 5 2993 3110 444105645 444105759 1.960000e-26 132.0
72 TraesCS5D01G489400 chr3B 96.739 920 25 3 5960 6878 71297127 71296212 0.000000e+00 1528.0
73 TraesCS5D01G489400 chr3B 92.988 328 19 4 4718 5042 12765059 12765385 7.860000e-130 475.0
74 TraesCS5D01G489400 chr3B 93.633 267 16 1 4291 4557 368323063 368322798 1.750000e-106 398.0
75 TraesCS5D01G489400 chr3B 91.753 291 10 3 7036 7323 71296216 71295937 8.150000e-105 392.0
76 TraesCS5D01G489400 chr3B 85.574 305 38 6 5353 5653 749698300 749698602 1.810000e-81 315.0
77 TraesCS5D01G489400 chr3B 88.211 246 24 3 7168 7409 808222675 808222431 1.100000e-73 289.0
78 TraesCS5D01G489400 chr3B 81.625 283 28 15 2849 3119 782679902 782679632 6.810000e-51 213.0
79 TraesCS5D01G489400 chr3B 89.571 163 16 1 8265 8426 66624121 66624283 1.140000e-48 206.0
80 TraesCS5D01G489400 chr3B 86.164 159 14 7 4570 4726 706775291 706775443 1.930000e-36 165.0
81 TraesCS5D01G489400 chr3B 85.535 159 15 8 4570 4726 28514455 28514607 8.990000e-35 159.0
82 TraesCS5D01G489400 chr3B 84.906 159 16 7 4570 4726 137748310 137748462 4.180000e-33 154.0
83 TraesCS5D01G489400 chr3B 97.727 88 2 0 6952 7039 556520697 556520784 1.500000e-32 152.0
84 TraesCS5D01G489400 chr3B 94.565 92 3 2 280 371 72458364 72458275 3.260000e-29 141.0
85 TraesCS5D01G489400 chr3B 91.753 97 4 3 6864 6959 616185401 616185308 1.960000e-26 132.0
86 TraesCS5D01G489400 chr3B 85.586 111 14 2 8439 8547 595293509 595293619 1.970000e-21 115.0
87 TraesCS5D01G489400 chr3B 97.727 44 1 0 5913 5956 460106383 460106340 9.320000e-10 76.8
88 TraesCS5D01G489400 chr1D 98.864 528 3 2 6352 6878 420085355 420084830 0.000000e+00 939.0
89 TraesCS5D01G489400 chr1D 99.198 374 3 0 7036 7409 420084834 420084461 0.000000e+00 675.0
90 TraesCS5D01G489400 chr1D 99.440 357 2 0 5960 6316 420085667 420085311 0.000000e+00 649.0
91 TraesCS5D01G489400 chr1D 84.766 256 36 2 8297 8549 203344979 203344724 4.010000e-63 254.0
92 TraesCS5D01G489400 chr1D 82.129 263 36 8 8297 8554 234011340 234011596 1.890000e-51 215.0
93 TraesCS5D01G489400 chr1D 81.707 246 37 8 1941 2183 419216049 419216289 1.910000e-46 198.0
94 TraesCS5D01G489400 chr1D 80.292 274 32 12 2848 3109 178459030 178458767 4.130000e-43 187.0
95 TraesCS5D01G489400 chr1D 78.986 276 36 11 2849 3112 467055828 467055563 1.490000e-37 169.0
96 TraesCS5D01G489400 chr1D 78.313 249 43 6 1956 2195 434321309 434321063 5.410000e-32 150.0
97 TraesCS5D01G489400 chr1D 96.591 88 1 2 283 370 440050443 440050358 2.520000e-30 145.0
98 TraesCS5D01G489400 chr1D 92.929 99 4 3 282 380 355171573 355171668 3.260000e-29 141.0
99 TraesCS5D01G489400 chr1D 90.385 104 7 3 271 373 12179660 12179559 5.450000e-27 134.0
100 TraesCS5D01G489400 chr1D 85.586 111 13 2 8439 8547 182046466 182046575 7.100000e-21 113.0
101 TraesCS5D01G489400 chr7B 96.828 536 15 2 6344 6878 22547034 22546500 0.000000e+00 894.0
102 TraesCS5D01G489400 chr7B 93.309 269 17 1 4288 4556 737774864 737775131 6.300000e-106 396.0
103 TraesCS5D01G489400 chr7B 89.024 246 22 3 7168 7409 671835711 671835955 5.080000e-77 300.0
104 TraesCS5D01G489400 chr7B 82.482 274 26 13 2848 3109 304933181 304933444 4.070000e-53 220.0
105 TraesCS5D01G489400 chr7B 94.118 51 2 1 5910 5959 418047843 418047793 9.320000e-10 76.8
106 TraesCS5D01G489400 chr6B 91.777 377 17 3 7036 7409 166026120 166026485 5.990000e-141 512.0
107 TraesCS5D01G489400 chr6B 91.398 372 17 1 5960 6316 166025272 166025643 6.030000e-136 496.0
108 TraesCS5D01G489400 chr6B 93.309 269 17 1 4288 4556 682421355 682421622 6.300000e-106 396.0
109 TraesCS5D01G489400 chr6B 79.046 482 89 11 1979 2451 664632376 664631898 3.900000e-83 320.0
110 TraesCS5D01G489400 chr6B 94.845 97 5 0 6952 7048 343032882 343032978 1.500000e-32 152.0
111 TraesCS5D01G489400 chr1A 93.808 323 20 0 4720 5042 491376539 491376217 3.630000e-133 486.0
112 TraesCS5D01G489400 chr1A 76.104 498 93 19 1957 2449 575202315 575201839 4.040000e-58 237.0
113 TraesCS5D01G489400 chr1A 81.923 260 35 8 8304 8554 313313913 313313657 8.800000e-50 209.0
114 TraesCS5D01G489400 chr1A 80.645 279 29 14 2847 3111 550727373 550727640 8.870000e-45 193.0
115 TraesCS5D01G489400 chr1A 80.144 277 31 16 2848 3110 501026065 501025799 1.480000e-42 185.0
116 TraesCS5D01G489400 chr1A 91.667 108 6 3 264 371 91047439 91047543 7.000000e-31 147.0
117 TraesCS5D01G489400 chr1A 97.674 86 0 2 284 369 590819580 590819663 7.000000e-31 147.0
118 TraesCS5D01G489400 chr7A 94.044 319 18 1 4725 5042 10422948 10423266 4.700000e-132 483.0
119 TraesCS5D01G489400 chr7A 86.842 152 12 5 4569 4718 198920732 198920877 6.950000e-36 163.0
120 TraesCS5D01G489400 chr7A 84.553 123 17 2 5040 5162 97407261 97407381 4.240000e-23 121.0
121 TraesCS5D01G489400 chr7A 83.824 136 13 7 5040 5170 336728752 336728883 4.240000e-23 121.0
122 TraesCS5D01G489400 chr7A 97.917 48 1 0 5912 5959 68752157 68752110 5.570000e-12 84.2
123 TraesCS5D01G489400 chr7A 100.000 28 0 0 4250 4277 592095483 592095510 1.600000e-02 52.8
124 TraesCS5D01G489400 chr5B 93.769 321 19 1 4723 5042 638783197 638783517 1.690000e-131 481.0
125 TraesCS5D01G489400 chr5B 82.261 513 48 22 697 1169 659098641 659098132 3.760000e-108 403.0
126 TraesCS5D01G489400 chr5B 93.333 270 16 2 4291 4559 146336621 146336353 1.750000e-106 398.0
127 TraesCS5D01G489400 chr5B 93.309 269 17 1 4289 4557 35776703 35776436 6.300000e-106 396.0
128 TraesCS5D01G489400 chr5B 80.282 497 82 8 1956 2447 408977577 408977092 2.300000e-95 361.0
129 TraesCS5D01G489400 chr5B 84.973 366 38 11 1184 1537 659095785 659095425 1.070000e-93 355.0
130 TraesCS5D01G489400 chr5B 80.137 438 76 10 1972 2404 658885945 658886376 5.040000e-82 316.0
131 TraesCS5D01G489400 chr5B 88.583 254 11 5 5679 5916 659102022 659101771 8.500000e-75 292.0
132 TraesCS5D01G489400 chr5B 93.370 181 12 0 3204 3384 659095605 659095425 1.430000e-67 268.0
133 TraesCS5D01G489400 chr5B 87.288 236 23 6 5040 5274 659103631 659103402 6.660000e-66 263.0
134 TraesCS5D01G489400 chr5B 81.752 274 28 12 2848 3109 100551280 100551543 8.800000e-50 209.0
135 TraesCS5D01G489400 chr5B 86.598 194 19 5 8459 8646 659095417 659095225 3.170000e-49 207.0
136 TraesCS5D01G489400 chr5B 82.514 183 31 1 107 289 659100123 659099942 8.990000e-35 159.0
137 TraesCS5D01G489400 chr5B 93.878 98 4 1 6952 7049 571209351 571209256 7.000000e-31 147.0
138 TraesCS5D01G489400 chr5B 94.444 90 2 2 6871 6959 90181817 90181730 1.520000e-27 135.0
139 TraesCS5D01G489400 chr5B 96.386 83 2 1 6871 6952 407639440 407639522 1.520000e-27 135.0
140 TraesCS5D01G489400 chr1B 93.769 321 18 2 4720 5040 527837402 527837720 1.690000e-131 481.0
141 TraesCS5D01G489400 chr1B 88.976 127 8 4 2993 3117 646955148 646955270 1.500000e-32 152.0
142 TraesCS5D01G489400 chr1B 87.387 111 11 2 8439 8547 253011131 253011240 3.280000e-24 124.0
143 TraesCS5D01G489400 chr1B 86.364 66 8 1 5892 5956 498863817 498863882 4.330000e-08 71.3
144 TraesCS5D01G489400 chr2D 93.750 320 19 1 4724 5042 645666370 645666051 6.080000e-131 479.0
145 TraesCS5D01G489400 chr2D 86.230 305 38 3 5354 5656 37051634 37051332 2.330000e-85 327.0
146 TraesCS5D01G489400 chr2D 76.772 508 84 14 1941 2443 580567542 580567064 4.010000e-63 254.0
147 TraesCS5D01G489400 chr2D 97.701 87 2 0 6952 7038 599307247 599307161 5.410000e-32 150.0
148 TraesCS5D01G489400 chr2D 78.113 265 37 14 2848 3102 603496364 603496617 1.950000e-31 148.0
149 TraesCS5D01G489400 chr2D 96.341 82 3 0 6871 6952 599307159 599307240 1.520000e-27 135.0
150 TraesCS5D01G489400 chr2D 91.667 96 6 1 6864 6959 490824505 490824412 1.960000e-26 132.0
151 TraesCS5D01G489400 chr2D 74.912 283 58 10 8283 8558 68936463 68936739 5.490000e-22 117.0
152 TraesCS5D01G489400 chr4A 93.730 319 19 1 4725 5042 69306110 69305792 2.190000e-130 477.0
153 TraesCS5D01G489400 chr4A 85.526 304 39 4 5353 5653 714825914 714826215 6.520000e-81 313.0
154 TraesCS5D01G489400 chr4A 81.989 372 54 9 7046 7409 68399123 68398757 3.930000e-78 303.0
155 TraesCS5D01G489400 chr4A 80.867 392 58 9 1985 2362 687310257 687309869 8.500000e-75 292.0
156 TraesCS5D01G489400 chr4A 80.399 301 35 15 2829 3117 694884651 694884939 3.170000e-49 207.0
157 TraesCS5D01G489400 chr4A 97.701 87 2 0 6952 7038 720134477 720134563 5.410000e-32 150.0
158 TraesCS5D01G489400 chr4A 94.000 50 2 1 5907 5956 582827375 582827327 3.350000e-09 75.0
159 TraesCS5D01G489400 chr2B 92.832 279 17 3 4279 4557 775369843 775370118 1.350000e-107 401.0
160 TraesCS5D01G489400 chr2B 82.609 299 30 12 2831 3117 134374463 134374751 2.410000e-60 244.0
161 TraesCS5D01G489400 chr2B 85.632 174 21 4 8276 8447 46722869 46722698 6.900000e-41 180.0
162 TraesCS5D01G489400 chr2B 90.351 114 5 6 284 395 150613463 150613572 2.520000e-30 145.0
163 TraesCS5D01G489400 chr2B 87.705 122 11 3 5042 5162 134374633 134374751 1.170000e-28 139.0
164 TraesCS5D01G489400 chr2B 96.341 82 3 0 6871 6952 142446636 142446717 1.520000e-27 135.0
165 TraesCS5D01G489400 chr2B 97.778 45 1 0 5915 5959 56512977 56512933 2.590000e-10 78.7
166 TraesCS5D01G489400 chr2B 100.000 32 0 0 1707 1738 660681880 660681911 9.380000e-05 60.2
167 TraesCS5D01G489400 chr2B 100.000 32 0 0 3554 3585 660681880 660681911 9.380000e-05 60.2
168 TraesCS5D01G489400 chr4D 92.115 279 18 4 4279 4556 451164188 451164463 2.930000e-104 390.0
169 TraesCS5D01G489400 chr4D 89.837 246 21 2 7168 7409 299323037 299323282 6.520000e-81 313.0
170 TraesCS5D01G489400 chr4D 80.145 413 69 10 1957 2362 320206541 320206947 6.570000e-76 296.0
171 TraesCS5D01G489400 chr4D 78.000 400 82 6 1956 2351 13309607 13309210 6.710000e-61 246.0
172 TraesCS5D01G489400 chr4D 81.100 291 52 3 2117 2404 47662292 47662582 6.760000e-56 230.0
173 TraesCS5D01G489400 chr4D 80.272 294 35 14 2837 3117 4098914 4098631 5.300000e-47 200.0
174 TraesCS5D01G489400 chr4D 80.000 280 33 12 2848 3115 16920421 16920689 1.480000e-42 185.0
175 TraesCS5D01G489400 chr4D 80.000 275 34 11 2848 3111 101626787 101626523 5.340000e-42 183.0
176 TraesCS5D01G489400 chr4D 79.853 273 33 10 2849 3110 494149486 494149225 6.900000e-41 180.0
177 TraesCS5D01G489400 chr4D 74.638 414 94 10 2033 2440 484281618 484281210 1.160000e-38 172.0
178 TraesCS5D01G489400 chr4D 97.727 88 2 0 6952 7039 428946410 428946497 1.500000e-32 152.0
179 TraesCS5D01G489400 chr4D 95.652 92 2 2 282 373 371926900 371926811 7.000000e-31 147.0
180 TraesCS5D01G489400 chr4D 94.681 94 2 3 283 375 218516284 218516193 9.060000e-30 143.0
181 TraesCS5D01G489400 chr4D 95.506 89 2 2 282 370 434161612 434161698 3.260000e-29 141.0
182 TraesCS5D01G489400 chr4D 93.617 94 4 2 284 377 478671936 478671845 1.170000e-28 139.0
183 TraesCS5D01G489400 chr4D 84.706 85 13 0 3782 3866 47662498 47662582 1.550000e-12 86.1
184 TraesCS5D01G489400 chr4D 89.474 57 4 2 2087 2141 419305257 419305201 4.330000e-08 71.3
185 TraesCS5D01G489400 chr7D 82.536 418 61 9 1958 2367 509561535 509561122 2.970000e-94 357.0
186 TraesCS5D01G489400 chr7D 79.570 279 41 13 2845 3114 407695556 407695285 1.480000e-42 185.0
187 TraesCS5D01G489400 chr7D 98.837 86 1 0 6952 7037 184866318 184866403 4.180000e-33 154.0
188 TraesCS5D01G489400 chr7D 94.681 94 3 2 280 373 141292084 141292175 2.520000e-30 145.0
189 TraesCS5D01G489400 chr7D 96.512 86 1 1 6874 6959 184866403 184866320 3.260000e-29 141.0
190 TraesCS5D01G489400 chr7D 86.441 118 12 3 5043 5159 407695399 407695285 9.120000e-25 126.0
191 TraesCS5D01G489400 chr6A 78.776 523 97 9 1939 2450 594942833 594943352 1.080000e-88 339.0
192 TraesCS5D01G489400 chr6A 79.789 475 80 11 1988 2450 594944580 594945050 1.800000e-86 331.0
193 TraesCS5D01G489400 chr6A 82.418 273 26 13 2849 3109 57708278 57708540 1.460000e-52 219.0
194 TraesCS5D01G489400 chr6A 82.022 267 33 10 2848 3109 603303895 603304151 6.810000e-51 213.0
195 TraesCS5D01G489400 chr6A 77.737 274 45 12 2848 3112 88082762 88082496 4.180000e-33 154.0
196 TraesCS5D01G489400 chr6D 78.488 516 105 6 1940 2450 462353378 462353892 5.010000e-87 333.0
197 TraesCS5D01G489400 chr6D 77.218 417 86 8 1984 2394 81652635 81653048 1.450000e-57 235.0
198 TraesCS5D01G489400 chr6D 80.212 283 41 12 2847 3121 354543748 354544023 1.910000e-46 198.0
199 TraesCS5D01G489400 chr6D 83.505 194 30 2 2044 2237 30287129 30286938 6.900000e-41 180.0
200 TraesCS5D01G489400 chr6D 80.228 263 32 13 2858 3109 97685028 97684775 6.900000e-41 180.0
201 TraesCS5D01G489400 chr6D 79.121 273 41 12 2849 3112 434447425 434447160 3.210000e-39 174.0
202 TraesCS5D01G489400 chr6D 97.701 87 2 0 6952 7038 136474683 136474597 5.410000e-32 150.0
203 TraesCS5D01G489400 chr6D 96.629 89 1 2 282 370 78083077 78083163 7.000000e-31 147.0
204 TraesCS5D01G489400 chr6D 95.604 91 2 2 280 370 157587406 157587494 2.520000e-30 145.0
205 TraesCS5D01G489400 chr6D 95.455 88 2 2 284 371 59623175 59623260 1.170000e-28 139.0
206 TraesCS5D01G489400 chr6D 77.007 274 43 12 2848 3110 410135261 410135525 1.170000e-28 139.0
207 TraesCS5D01G489400 chr6D 76.812 276 42 16 2848 3111 27317992 27318257 1.520000e-27 135.0
208 TraesCS5D01G489400 chr6D 96.341 82 3 0 6871 6952 136474595 136474676 1.520000e-27 135.0
209 TraesCS5D01G489400 chr6D 94.318 88 3 2 284 371 95294905 95294990 5.450000e-27 134.0
210 TraesCS5D01G489400 chr6D 94.382 89 1 2 284 372 185368083 185368167 5.450000e-27 134.0
211 TraesCS5D01G489400 chr6D 76.103 272 47 12 2848 3109 448338188 448337925 9.120000e-25 126.0
212 TraesCS5D01G489400 chr6D 100.000 28 0 0 4250 4277 164539286 164539313 1.600000e-02 52.8
213 TraesCS5D01G489400 chrUn 85.197 304 40 4 5353 5653 318162427 318162728 3.030000e-79 307.0
214 TraesCS5D01G489400 chrUn 80.364 275 34 14 2846 3109 83540822 83541087 3.190000e-44 191.0
215 TraesCS5D01G489400 chrUn 79.487 273 34 14 2849 3109 115099406 115099668 3.210000e-39 174.0
216 TraesCS5D01G489400 chrUn 77.617 277 44 15 2845 3111 115099672 115099404 1.500000e-32 152.0
217 TraesCS5D01G489400 chrUn 77.860 271 42 17 2849 3109 465849838 465849576 1.500000e-32 152.0
218 TraesCS5D01G489400 chrUn 76.812 276 49 13 2842 3109 83541093 83540825 3.260000e-29 141.0
219 TraesCS5D01G489400 chrUn 95.506 89 2 2 282 370 104668894 104668808 3.260000e-29 141.0
220 TraesCS5D01G489400 chrUn 95.455 88 2 2 284 371 31861210 31861295 1.170000e-28 139.0
221 TraesCS5D01G489400 chrUn 94.505 91 2 3 281 370 84435377 84435465 4.210000e-28 137.0
222 TraesCS5D01G489400 chrUn 94.444 90 3 2 281 370 378270655 378270568 4.210000e-28 137.0
223 TraesCS5D01G489400 chrUn 94.444 90 3 2 281 370 447954259 447954346 4.210000e-28 137.0
224 TraesCS5D01G489400 chrUn 85.385 130 17 1 8423 8550 96558603 96558732 5.450000e-27 134.0
225 TraesCS5D01G489400 chrUn 93.333 90 4 2 283 372 110002904 110002991 1.960000e-26 132.0
226 TraesCS5D01G489400 chrUn 94.253 87 3 2 284 370 222975854 222975770 1.960000e-26 132.0
227 TraesCS5D01G489400 chrUn 94.253 87 3 2 284 370 303647988 303647904 1.960000e-26 132.0
228 TraesCS5D01G489400 chrUn 93.333 90 4 2 281 370 320620066 320620153 1.960000e-26 132.0
229 TraesCS5D01G489400 chrUn 92.391 92 5 2 281 372 197752482 197752393 7.050000e-26 130.0
230 TraesCS5D01G489400 chrUn 75.845 207 33 11 1985 2190 27584301 27584111 1.200000e-13 89.8
231 TraesCS5D01G489400 chrUn 97.778 45 1 0 5915 5959 55795708 55795752 2.590000e-10 78.7
232 TraesCS5D01G489400 chrUn 88.710 62 7 0 3048 3109 32150439 32150500 9.320000e-10 76.8
233 TraesCS5D01G489400 chrUn 100.000 28 0 0 4250 4277 398674493 398674466 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G489400 chr5D 524491409 524500063 8654 True 15983.000000 15983 100.000000 1 8655 1 chr5D.!!$R6 8654
1 TraesCS5D01G489400 chr5D 524492532 524498698 6166 True 380.169231 822 93.882154 1366 7532 13 chr5D.!!$R7 6166
2 TraesCS5D01G489400 chr3D 585103195 585104062 867 True 1500.000000 1500 97.926000 5995 6858 1 chr3D.!!$R8 863
3 TraesCS5D01G489400 chr3D 572163637 572164924 1287 True 798.733333 1648 99.228333 5960 7409 3 chr3D.!!$R9 1449
4 TraesCS5D01G489400 chr5A 650686200 650688795 2595 True 952.600000 1546 93.628000 1 8246 5 chr5A.!!$R5 8245
5 TraesCS5D01G489400 chr2A 758748381 758749571 1190 True 963.000000 1539 94.183000 5960 7323 2 chr2A.!!$R4 1363
6 TraesCS5D01G489400 chr2A 8143421 8144270 849 False 716.500000 893 95.270000 5960 6875 2 chr2A.!!$F6 915
7 TraesCS5D01G489400 chr3A 30761908 30763201 1293 False 1044.500000 1533 95.229000 5960 7409 2 chr3A.!!$F3 1449
8 TraesCS5D01G489400 chr4B 527644966 527646156 1190 False 960.000000 1528 94.295500 5960 7323 2 chr4B.!!$F2 1363
9 TraesCS5D01G489400 chr3B 71295937 71297127 1190 True 960.000000 1528 94.246000 5960 7323 2 chr3B.!!$R7 1363
10 TraesCS5D01G489400 chr1D 420084461 420085667 1206 True 754.333333 939 99.167333 5960 7409 3 chr1D.!!$R7 1449
11 TraesCS5D01G489400 chr7B 22546500 22547034 534 True 894.000000 894 96.828000 6344 6878 1 chr7B.!!$R1 534
12 TraesCS5D01G489400 chr6B 166025272 166026485 1213 False 504.000000 512 91.587500 5960 7409 2 chr6B.!!$F3 1449
13 TraesCS5D01G489400 chr5B 659095225 659103631 8406 True 278.142857 403 86.512429 107 8646 7 chr5B.!!$R6 8539
14 TraesCS5D01G489400 chr6A 594942833 594945050 2217 False 335.000000 339 79.282500 1939 2450 2 chr6A.!!$F3 511
15 TraesCS5D01G489400 chr6D 462353378 462353892 514 False 333.000000 333 78.488000 1940 2450 1 chr6D.!!$F12 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 4071 0.036671 CTAACAACTCCGGGGGACAC 60.037 60.0 6.13 0.0 0.0 3.67 F
1182 7969 0.940126 GCCATCGCTGGTGTATGAAG 59.060 55.0 7.21 0.0 45.1 3.02 F
7532 15360 0.179000 CGGGCTGAAGGAAGTATGCT 59.821 55.0 0.00 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
6331 14065 4.575885 TGTACATACCTCTTGAAAGCACC 58.424 43.478 0.0 0.0 0.00 5.01 R
7553 15381 1.604278 GACCGCCTTCAGAATATTGCC 59.396 52.381 0.0 0.0 0.00 4.52 R
8359 16188 0.034380 AGCTGATGCAAGTGCCTGAT 60.034 50.000 0.0 0.0 42.74 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 3604 2.802816 GGTGTGATCTCACTGTGAACAC 59.197 50.000 24.78 24.78 46.55 3.32
283 3686 3.485463 TTGTAGCAAGTACTGGCAACT 57.515 42.857 24.16 6.37 32.19 3.16
284 3687 4.610605 TTGTAGCAAGTACTGGCAACTA 57.389 40.909 24.16 5.33 32.19 2.24
285 3688 3.921677 TGTAGCAAGTACTGGCAACTAC 58.078 45.455 24.16 17.01 32.19 2.73
286 3689 3.576982 TGTAGCAAGTACTGGCAACTACT 59.423 43.478 24.16 4.86 32.19 2.57
288 3691 2.028020 AGCAAGTACTGGCAACTACTCC 60.028 50.000 24.16 0.00 37.61 3.85
289 3692 2.935676 GCAAGTACTGGCAACTACTCCC 60.936 54.545 17.77 0.00 37.61 4.30
292 3695 1.481363 GTACTGGCAACTACTCCCTCC 59.519 57.143 0.00 0.00 37.61 4.30
293 3696 1.258445 ACTGGCAACTACTCCCTCCG 61.258 60.000 0.00 0.00 37.61 4.63
294 3697 1.229082 TGGCAACTACTCCCTCCGT 60.229 57.895 0.00 0.00 37.61 4.69
295 3698 1.255667 TGGCAACTACTCCCTCCGTC 61.256 60.000 0.00 0.00 37.61 4.79
296 3699 1.516423 GCAACTACTCCCTCCGTCC 59.484 63.158 0.00 0.00 0.00 4.79
297 3700 1.957765 GCAACTACTCCCTCCGTCCC 61.958 65.000 0.00 0.00 0.00 4.46
298 3701 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
299 3702 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
300 3703 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
301 3704 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
302 3705 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
303 3706 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
304 3707 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
305 3708 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
306 3709 5.222278 ACTCCCTCCGTCCCATAATATAT 57.778 43.478 0.00 0.00 0.00 0.86
307 3710 6.351317 ACTCCCTCCGTCCCATAATATATA 57.649 41.667 0.00 0.00 0.00 0.86
308 3711 6.935036 ACTCCCTCCGTCCCATAATATATAT 58.065 40.000 0.00 0.00 0.00 0.86
309 3712 6.782988 ACTCCCTCCGTCCCATAATATATATG 59.217 42.308 0.00 0.00 0.00 1.78
310 3713 6.929338 TCCCTCCGTCCCATAATATATATGA 58.071 40.000 0.00 0.00 0.00 2.15
311 3714 7.010771 TCCCTCCGTCCCATAATATATATGAG 58.989 42.308 0.00 0.00 0.00 2.90
312 3715 6.295349 CCCTCCGTCCCATAATATATATGAGC 60.295 46.154 0.00 0.00 0.00 4.26
313 3716 6.327279 TCCGTCCCATAATATATATGAGCG 57.673 41.667 0.00 0.00 0.00 5.03
314 3717 5.831525 TCCGTCCCATAATATATATGAGCGT 59.168 40.000 0.00 0.00 0.00 5.07
315 3718 6.322969 TCCGTCCCATAATATATATGAGCGTT 59.677 38.462 0.00 0.00 0.00 4.84
316 3719 6.984474 CCGTCCCATAATATATATGAGCGTTT 59.016 38.462 0.00 0.00 0.00 3.60
317 3720 7.494625 CCGTCCCATAATATATATGAGCGTTTT 59.505 37.037 0.00 0.00 0.00 2.43
318 3721 8.879759 CGTCCCATAATATATATGAGCGTTTTT 58.120 33.333 0.00 0.00 0.00 1.94
345 3748 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
346 3749 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
347 3750 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
348 3751 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
349 3752 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
350 3753 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
351 3754 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
352 3755 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
353 3756 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
356 3759 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
357 3760 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
358 3761 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
359 3762 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
360 3763 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
361 3764 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
362 3765 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
363 3766 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
364 3767 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
365 3768 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
366 3769 5.667626 GCTCTTATATTATGGGATGGAGGGA 59.332 44.000 0.00 0.00 0.00 4.20
367 3770 6.183361 GCTCTTATATTATGGGATGGAGGGAG 60.183 46.154 0.00 0.00 0.00 4.30
398 3801 9.407380 AGTCTATAATGTTGATTTTACCATGCA 57.593 29.630 0.00 0.00 0.00 3.96
413 3816 3.068590 ACCATGCAAGCCAAGTTATATGC 59.931 43.478 0.00 0.00 0.00 3.14
417 3820 4.493547 TGCAAGCCAAGTTATATGCAAAC 58.506 39.130 0.00 0.00 40.47 2.93
463 3866 5.895636 ATGATGTCCAATTTTTACTCGCA 57.104 34.783 0.00 0.00 0.00 5.10
521 3936 5.409826 AGTCCATGTCGAATTTTGAGTCTTC 59.590 40.000 0.00 0.00 0.00 2.87
540 3955 7.701445 AGTCTTCAGAGTTTCATCAAAAAGTG 58.299 34.615 0.00 0.00 0.00 3.16
572 3987 8.352942 ACTGGATTTGTATGTGAAAGAAGTTTC 58.647 33.333 0.00 0.00 42.27 2.78
656 4071 0.036671 CTAACAACTCCGGGGGACAC 60.037 60.000 6.13 0.00 0.00 3.67
674 4089 6.338937 GGGACACAGACGAAGAGTAAATATT 58.661 40.000 0.00 0.00 0.00 1.28
723 5124 1.737793 GATGGAAGCGTTCGTGGAAAT 59.262 47.619 0.00 0.00 0.00 2.17
835 5243 1.361793 GCGGTTGGTATTCTACGCAA 58.638 50.000 0.00 0.00 45.57 4.85
860 5268 0.976641 GGATGCCATGGATCCGTCTA 59.023 55.000 18.40 0.00 30.30 2.59
901 5338 4.382577 GCACGGGGATGAATAAAACCAAAT 60.383 41.667 0.00 0.00 0.00 2.32
979 5425 6.183360 CCAAACTCCATTCTTCTTCCACTTTT 60.183 38.462 0.00 0.00 0.00 2.27
1084 5540 2.113860 AGTGTATGGCTCGCACATTT 57.886 45.000 8.15 0.00 35.75 2.32
1148 5604 2.353889 GCAAATGCATCACGTCTGAGAT 59.646 45.455 0.00 0.00 41.59 2.75
1149 5605 3.545624 GCAAATGCATCACGTCTGAGATC 60.546 47.826 0.00 0.00 41.59 2.75
1156 5612 3.073274 TCACGTCTGAGATCTTCCAGA 57.927 47.619 9.49 9.49 37.11 3.86
1169 5625 4.320456 CCAGATCGGGGGCCATCG 62.320 72.222 4.39 9.21 0.00 3.84
1182 7969 0.940126 GCCATCGCTGGTGTATGAAG 59.060 55.000 7.21 0.00 45.10 3.02
1306 8099 1.640149 TGCTTGATCAGGATGGGGAAA 59.360 47.619 9.36 0.00 36.16 3.13
1359 8152 7.651808 CATGTTACACTTTCTCCAAAGAACAT 58.348 34.615 1.50 4.84 41.13 2.71
1362 8155 3.319122 ACACTTTCTCCAAAGAACATGGC 59.681 43.478 0.00 0.00 41.60 4.40
6331 14065 1.805945 GCAGGACGGCGTCAAGTAG 60.806 63.158 37.13 22.72 33.68 2.57
7532 15360 0.179000 CGGGCTGAAGGAAGTATGCT 59.821 55.000 0.00 0.00 0.00 3.79
7533 15361 1.407437 CGGGCTGAAGGAAGTATGCTT 60.407 52.381 0.00 0.00 40.27 3.91
7553 15381 1.089920 CAAGTTCCTTGGATCCGCAG 58.910 55.000 7.39 5.50 37.77 5.18
7578 15406 0.620556 ATTCTGAAGGCGGTCATGGT 59.379 50.000 0.00 0.00 0.00 3.55
7614 15442 0.179078 CATCTGAGGAGCAGCTGTCC 60.179 60.000 21.10 21.10 44.52 4.02
7634 15462 2.354604 CCCTCTGTTCTCAAGGAGCTTC 60.355 54.545 0.00 0.00 31.44 3.86
7657 15485 1.887956 GCCAAACTTGCTCCCTGATCA 60.888 52.381 0.00 0.00 0.00 2.92
7682 15510 3.430895 GGTCGAAAGCAACGAAACTATGA 59.569 43.478 0.00 0.00 41.31 2.15
7691 15519 8.492673 AAGCAACGAAACTATGAGATTATCAA 57.507 30.769 0.00 0.00 42.53 2.57
7710 15538 4.454678 TCAAGATTATCATGCCGCTTCTT 58.545 39.130 0.00 0.00 0.00 2.52
7782 15610 4.152647 TCATGTACTCTCCAGTGACTTGT 58.847 43.478 0.00 0.00 33.62 3.16
7788 15616 1.971357 TCTCCAGTGACTTGTCTTCCC 59.029 52.381 0.00 0.00 0.00 3.97
7804 15632 0.178068 TCCCTCGGCAGCTTATCAAC 59.822 55.000 0.00 0.00 0.00 3.18
7905 15733 9.941325 ACATAATTCCAAATTCACTTTAATGCA 57.059 25.926 0.00 0.00 0.00 3.96
7944 15772 3.688673 GGTCTGATGGCTTTTCTTCAGAG 59.311 47.826 9.65 0.00 43.71 3.35
7945 15773 4.564406 GGTCTGATGGCTTTTCTTCAGAGA 60.564 45.833 9.65 0.00 43.71 3.10
7953 15781 1.734655 TTTCTTCAGAGAGGCCCTGT 58.265 50.000 0.00 0.00 32.44 4.00
7968 15796 3.181466 GGCCCTGTCATTTTGTTCAACTT 60.181 43.478 0.00 0.00 0.00 2.66
7976 15804 2.842208 TTTGTTCAACTTGCGAGTGG 57.158 45.000 7.56 4.39 35.91 4.00
7980 15808 2.750166 TGTTCAACTTGCGAGTGGAAAA 59.250 40.909 23.16 16.70 45.18 2.29
7994 15822 3.760684 AGTGGAAAAGCAAGATTAGCCAG 59.239 43.478 0.00 0.00 0.00 4.85
7997 15825 3.505836 GAAAAGCAAGATTAGCCAGCAC 58.494 45.455 0.00 0.00 0.00 4.40
7998 15826 2.503895 AAGCAAGATTAGCCAGCACT 57.496 45.000 0.00 0.00 0.00 4.40
7999 15827 2.035530 AGCAAGATTAGCCAGCACTC 57.964 50.000 0.00 0.00 0.00 3.51
8000 15828 1.558756 AGCAAGATTAGCCAGCACTCT 59.441 47.619 0.00 0.00 0.00 3.24
8001 15829 2.768527 AGCAAGATTAGCCAGCACTCTA 59.231 45.455 0.00 0.00 0.00 2.43
8002 15830 3.198635 AGCAAGATTAGCCAGCACTCTAA 59.801 43.478 0.00 0.00 0.00 2.10
8003 15831 4.133078 GCAAGATTAGCCAGCACTCTAAT 58.867 43.478 4.68 4.68 37.98 1.73
8004 15832 4.024218 GCAAGATTAGCCAGCACTCTAATG 60.024 45.833 8.47 0.37 36.09 1.90
8043 15871 2.945668 GCGGCCAATTATCTCTGTTCTT 59.054 45.455 2.24 0.00 0.00 2.52
8081 15909 2.498078 GTCCCTGAGAAGAAAGATCGGT 59.502 50.000 0.00 0.00 0.00 4.69
8098 15926 1.137675 CGGTAGTGGTTAGGTTAGCCC 59.862 57.143 0.00 0.00 34.57 5.19
8099 15927 2.190538 GGTAGTGGTTAGGTTAGCCCA 58.809 52.381 0.00 0.00 34.66 5.36
8114 15942 1.712977 GCCCAGAAGCTGCAGAATCG 61.713 60.000 20.43 10.26 0.00 3.34
8127 15955 5.725110 TGCAGAATCGAAGAGAAATAAGC 57.275 39.130 0.00 0.00 43.63 3.09
8158 15986 5.414144 AGAAGAGGAAAAGAAAGCATGTAGC 59.586 40.000 0.00 0.00 46.19 3.58
8195 16024 3.341823 GTGGAGCTCATTCACATGTTCT 58.658 45.455 17.19 0.00 0.00 3.01
8203 16032 6.883217 AGCTCATTCACATGTTCTTATGTTCT 59.117 34.615 0.00 0.00 39.17 3.01
8242 16071 3.334583 TCAGTTAAGATCAAAGCGGCT 57.665 42.857 0.00 0.00 0.00 5.52
8246 16075 4.391830 CAGTTAAGATCAAAGCGGCTACAA 59.608 41.667 1.35 0.00 0.00 2.41
8247 16076 5.001232 AGTTAAGATCAAAGCGGCTACAAA 58.999 37.500 1.35 0.00 0.00 2.83
8248 16077 5.648092 AGTTAAGATCAAAGCGGCTACAAAT 59.352 36.000 1.35 0.00 0.00 2.32
8249 16078 4.622701 AAGATCAAAGCGGCTACAAATC 57.377 40.909 1.35 4.80 0.00 2.17
8250 16079 2.945668 AGATCAAAGCGGCTACAAATCC 59.054 45.455 1.35 0.00 0.00 3.01
8251 16080 2.192664 TCAAAGCGGCTACAAATCCA 57.807 45.000 1.35 0.00 0.00 3.41
8252 16081 2.083774 TCAAAGCGGCTACAAATCCAG 58.916 47.619 1.35 0.00 0.00 3.86
8253 16082 1.812571 CAAAGCGGCTACAAATCCAGT 59.187 47.619 1.35 0.00 0.00 4.00
8254 16083 3.006940 CAAAGCGGCTACAAATCCAGTA 58.993 45.455 1.35 0.00 0.00 2.74
8255 16084 3.343941 AAGCGGCTACAAATCCAGTAA 57.656 42.857 1.35 0.00 0.00 2.24
8256 16085 3.343941 AGCGGCTACAAATCCAGTAAA 57.656 42.857 0.00 0.00 0.00 2.01
8257 16086 3.886123 AGCGGCTACAAATCCAGTAAAT 58.114 40.909 0.00 0.00 0.00 1.40
8258 16087 3.627577 AGCGGCTACAAATCCAGTAAATG 59.372 43.478 0.00 0.00 0.00 2.32
8262 16091 4.097892 GGCTACAAATCCAGTAAATGGGTG 59.902 45.833 0.00 0.00 43.88 4.61
8263 16092 4.440112 GCTACAAATCCAGTAAATGGGTGC 60.440 45.833 0.00 0.00 43.88 5.01
8264 16093 2.491693 ACAAATCCAGTAAATGGGTGCG 59.508 45.455 0.00 0.00 43.88 5.34
8265 16094 1.102978 AATCCAGTAAATGGGTGCGC 58.897 50.000 0.00 0.00 43.88 6.09
8266 16095 2.294284 AATCCAGTAAATGGGTGCGCC 61.294 52.381 8.12 8.12 43.88 6.53
8267 16096 1.677300 CCAGTAAATGGGTGCGCCA 60.677 57.895 19.98 4.65 46.36 5.69
8268 16097 1.037030 CCAGTAAATGGGTGCGCCAT 61.037 55.000 19.98 7.02 46.36 4.40
8269 16098 0.381801 CAGTAAATGGGTGCGCCATC 59.618 55.000 19.98 1.53 36.17 3.51
8270 16099 0.034574 AGTAAATGGGTGCGCCATCA 60.035 50.000 19.98 8.29 36.17 3.07
8271 16100 0.100503 GTAAATGGGTGCGCCATCAC 59.899 55.000 19.98 4.37 36.17 3.06
8272 16101 1.372838 TAAATGGGTGCGCCATCACG 61.373 55.000 19.98 0.00 37.83 4.35
8273 16102 3.620419 AATGGGTGCGCCATCACGA 62.620 57.895 19.98 0.00 37.83 4.35
8274 16103 4.758251 TGGGTGCGCCATCACGAG 62.758 66.667 19.98 0.00 37.83 4.18
8278 16107 4.678499 TGCGCCATCACGAGCACA 62.678 61.111 4.18 0.00 34.39 4.57
8279 16108 4.152625 GCGCCATCACGAGCACAC 62.153 66.667 0.00 0.00 34.06 3.82
8280 16109 2.433145 CGCCATCACGAGCACACT 60.433 61.111 0.00 0.00 34.06 3.55
8281 16110 2.733671 CGCCATCACGAGCACACTG 61.734 63.158 0.00 0.00 34.06 3.66
8282 16111 3.031964 GCCATCACGAGCACACTGC 62.032 63.158 0.00 0.00 45.46 4.40
8283 16112 2.393768 CCATCACGAGCACACTGCC 61.394 63.158 0.00 0.00 46.52 4.85
8284 16113 1.668793 CATCACGAGCACACTGCCA 60.669 57.895 0.00 0.00 46.52 4.92
8285 16114 1.071299 ATCACGAGCACACTGCCAA 59.929 52.632 0.00 0.00 46.52 4.52
8286 16115 0.952497 ATCACGAGCACACTGCCAAG 60.952 55.000 0.00 0.00 46.52 3.61
8287 16116 2.281070 ACGAGCACACTGCCAAGG 60.281 61.111 0.00 0.00 46.52 3.61
8288 16117 2.031012 CGAGCACACTGCCAAGGA 59.969 61.111 0.00 0.00 46.52 3.36
8289 16118 1.597854 CGAGCACACTGCCAAGGAA 60.598 57.895 0.00 0.00 46.52 3.36
8290 16119 1.845809 CGAGCACACTGCCAAGGAAC 61.846 60.000 0.00 0.00 46.52 3.62
8291 16120 0.536006 GAGCACACTGCCAAGGAACT 60.536 55.000 0.00 0.00 46.52 3.01
8292 16121 0.536006 AGCACACTGCCAAGGAACTC 60.536 55.000 0.00 0.00 46.52 3.01
8293 16122 0.536006 GCACACTGCCAAGGAACTCT 60.536 55.000 0.00 0.00 35.28 3.24
8294 16123 1.270839 GCACACTGCCAAGGAACTCTA 60.271 52.381 0.00 0.00 35.28 2.43
8295 16124 2.693069 CACACTGCCAAGGAACTCTAG 58.307 52.381 0.00 0.00 38.49 2.43
8296 16125 2.037772 CACACTGCCAAGGAACTCTAGT 59.962 50.000 0.00 0.00 38.49 2.57
8297 16126 2.037772 ACACTGCCAAGGAACTCTAGTG 59.962 50.000 0.00 0.00 38.49 2.74
8298 16127 2.037772 CACTGCCAAGGAACTCTAGTGT 59.962 50.000 0.00 0.00 38.49 3.55
8299 16128 3.258372 CACTGCCAAGGAACTCTAGTGTA 59.742 47.826 0.00 0.00 38.49 2.90
8300 16129 3.901844 ACTGCCAAGGAACTCTAGTGTAA 59.098 43.478 0.00 0.00 38.49 2.41
8301 16130 4.246458 CTGCCAAGGAACTCTAGTGTAAC 58.754 47.826 0.00 0.00 38.49 2.50
8303 16132 4.021368 TGCCAAGGAACTCTAGTGTAACTC 60.021 45.833 0.00 0.00 41.99 3.01
8304 16133 4.221041 GCCAAGGAACTCTAGTGTAACTCT 59.779 45.833 0.00 0.00 41.99 3.24
8305 16134 5.418209 GCCAAGGAACTCTAGTGTAACTCTA 59.582 44.000 0.00 0.00 41.99 2.43
8306 16135 6.097129 GCCAAGGAACTCTAGTGTAACTCTAT 59.903 42.308 0.00 0.00 41.99 1.98
8307 16136 7.484975 CCAAGGAACTCTAGTGTAACTCTATG 58.515 42.308 0.00 0.00 41.99 2.23
8308 16137 7.122948 CCAAGGAACTCTAGTGTAACTCTATGT 59.877 40.741 0.00 0.00 41.99 2.29
8309 16138 7.971168 CAAGGAACTCTAGTGTAACTCTATGTG 59.029 40.741 0.00 0.00 41.99 3.21
8310 16139 7.670559 AAGGAACTCTAGTGTAACTCTATGTGT 59.329 37.037 0.00 0.00 41.99 3.72
8316 16145 4.761910 GTGTAACTCTATGTGTCATGCG 57.238 45.455 0.00 0.00 0.00 4.73
8317 16146 4.174009 GTGTAACTCTATGTGTCATGCGT 58.826 43.478 0.00 0.00 0.00 5.24
8318 16147 5.337554 GTGTAACTCTATGTGTCATGCGTA 58.662 41.667 0.00 0.00 0.00 4.42
8319 16148 5.455849 GTGTAACTCTATGTGTCATGCGTAG 59.544 44.000 0.00 0.00 0.00 3.51
8338 16167 6.244377 CGTAGCTGTTAACTCTTAATCACG 57.756 41.667 7.22 6.71 0.00 4.35
8339 16168 5.798934 CGTAGCTGTTAACTCTTAATCACGT 59.201 40.000 7.22 0.00 0.00 4.49
8340 16169 6.307318 CGTAGCTGTTAACTCTTAATCACGTT 59.693 38.462 7.22 0.00 0.00 3.99
8341 16170 6.467723 AGCTGTTAACTCTTAATCACGTTG 57.532 37.500 7.22 0.00 0.00 4.10
8342 16171 5.080068 GCTGTTAACTCTTAATCACGTTGC 58.920 41.667 7.22 0.00 0.00 4.17
8343 16172 5.107065 GCTGTTAACTCTTAATCACGTTGCT 60.107 40.000 7.22 0.00 0.00 3.91
8344 16173 6.565999 GCTGTTAACTCTTAATCACGTTGCTT 60.566 38.462 7.22 0.00 0.00 3.91
8345 16174 6.655062 TGTTAACTCTTAATCACGTTGCTTG 58.345 36.000 7.22 0.00 0.00 4.01
8346 16175 6.259167 TGTTAACTCTTAATCACGTTGCTTGT 59.741 34.615 7.22 0.00 0.00 3.16
8347 16176 7.438757 TGTTAACTCTTAATCACGTTGCTTGTA 59.561 33.333 7.22 0.00 0.00 2.41
8348 16177 8.440833 GTTAACTCTTAATCACGTTGCTTGTAT 58.559 33.333 0.00 0.00 0.00 2.29
8349 16178 6.408858 ACTCTTAATCACGTTGCTTGTATG 57.591 37.500 0.00 0.00 0.00 2.39
8350 16179 5.163854 ACTCTTAATCACGTTGCTTGTATGC 60.164 40.000 0.00 0.00 0.00 3.14
8351 16180 4.693095 TCTTAATCACGTTGCTTGTATGCA 59.307 37.500 0.00 0.00 41.65 3.96
8364 16193 6.741109 TGCTTGTATGCAATCAAATATCAGG 58.259 36.000 0.00 0.00 40.29 3.86
8365 16194 5.632347 GCTTGTATGCAATCAAATATCAGGC 59.368 40.000 0.00 0.00 33.65 4.85
8366 16195 6.712179 TTGTATGCAATCAAATATCAGGCA 57.288 33.333 0.00 0.00 0.00 4.75
8367 16196 6.075762 TGTATGCAATCAAATATCAGGCAC 57.924 37.500 0.00 0.00 32.04 5.01
8368 16197 5.829391 TGTATGCAATCAAATATCAGGCACT 59.171 36.000 0.00 0.00 43.88 4.40
8369 16198 5.864418 ATGCAATCAAATATCAGGCACTT 57.136 34.783 0.00 0.00 34.60 3.16
8370 16199 5.001237 TGCAATCAAATATCAGGCACTTG 57.999 39.130 0.00 0.00 34.60 3.16
8371 16200 3.800506 GCAATCAAATATCAGGCACTTGC 59.199 43.478 0.00 0.00 34.60 4.01
8372 16201 4.678574 GCAATCAAATATCAGGCACTTGCA 60.679 41.667 3.15 0.00 44.36 4.08
8373 16202 5.597806 CAATCAAATATCAGGCACTTGCAT 58.402 37.500 3.15 0.00 44.36 3.96
8374 16203 4.906065 TCAAATATCAGGCACTTGCATC 57.094 40.909 3.15 0.00 44.36 3.91
8375 16204 4.271661 TCAAATATCAGGCACTTGCATCA 58.728 39.130 3.15 0.00 44.36 3.07
8376 16205 4.337274 TCAAATATCAGGCACTTGCATCAG 59.663 41.667 3.15 0.00 44.36 2.90
8377 16206 1.671979 TATCAGGCACTTGCATCAGC 58.328 50.000 3.15 0.00 44.36 4.26
8378 16207 0.034380 ATCAGGCACTTGCATCAGCT 60.034 50.000 3.15 0.00 44.36 4.24
8379 16208 0.251033 TCAGGCACTTGCATCAGCTT 60.251 50.000 3.15 0.00 44.36 3.74
8380 16209 1.003464 TCAGGCACTTGCATCAGCTTA 59.997 47.619 3.15 0.00 44.36 3.09
8381 16210 1.400846 CAGGCACTTGCATCAGCTTAG 59.599 52.381 3.15 0.00 44.36 2.18
8382 16211 0.100146 GGCACTTGCATCAGCTTAGC 59.900 55.000 3.15 0.00 44.36 3.09
8383 16212 0.100146 GCACTTGCATCAGCTTAGCC 59.900 55.000 0.00 0.00 42.74 3.93
8384 16213 1.456296 CACTTGCATCAGCTTAGCCA 58.544 50.000 0.00 0.00 42.74 4.75
8385 16214 1.814394 CACTTGCATCAGCTTAGCCAA 59.186 47.619 0.00 0.00 42.74 4.52
8386 16215 2.426024 CACTTGCATCAGCTTAGCCAAT 59.574 45.455 0.00 0.00 42.74 3.16
8387 16216 2.426024 ACTTGCATCAGCTTAGCCAATG 59.574 45.455 0.00 6.33 42.74 2.82
8388 16217 0.742505 TGCATCAGCTTAGCCAATGC 59.257 50.000 25.07 25.07 42.98 3.56
8389 16218 0.742505 GCATCAGCTTAGCCAATGCA 59.257 50.000 26.15 0.00 42.55 3.96
8390 16219 1.535437 GCATCAGCTTAGCCAATGCAC 60.535 52.381 26.15 7.18 42.55 4.57
8391 16220 1.019673 ATCAGCTTAGCCAATGCACG 58.980 50.000 0.00 0.00 41.13 5.34
8392 16221 1.226491 CAGCTTAGCCAATGCACGC 60.226 57.895 0.00 0.00 41.13 5.34
8393 16222 1.675310 AGCTTAGCCAATGCACGCA 60.675 52.632 0.00 0.00 41.13 5.24
8394 16223 1.212490 GCTTAGCCAATGCACGCAA 59.788 52.632 0.00 0.00 41.13 4.85
8395 16224 1.072666 GCTTAGCCAATGCACGCAAC 61.073 55.000 0.00 0.00 41.13 4.17
8396 16225 0.523072 CTTAGCCAATGCACGCAACT 59.477 50.000 0.00 0.00 41.13 3.16
8397 16226 1.737236 CTTAGCCAATGCACGCAACTA 59.263 47.619 0.00 0.00 41.13 2.24
8398 16227 1.814793 TAGCCAATGCACGCAACTAA 58.185 45.000 0.00 0.00 41.13 2.24
8399 16228 0.958091 AGCCAATGCACGCAACTAAA 59.042 45.000 0.00 0.00 41.13 1.85
8400 16229 1.059942 GCCAATGCACGCAACTAAAC 58.940 50.000 0.00 0.00 37.47 2.01
8401 16230 1.696988 CCAATGCACGCAACTAAACC 58.303 50.000 0.00 0.00 0.00 3.27
8402 16231 1.668628 CCAATGCACGCAACTAAACCC 60.669 52.381 0.00 0.00 0.00 4.11
8403 16232 1.000827 CAATGCACGCAACTAAACCCA 60.001 47.619 0.00 0.00 0.00 4.51
8404 16233 0.881118 ATGCACGCAACTAAACCCAG 59.119 50.000 0.00 0.00 0.00 4.45
8405 16234 1.169661 TGCACGCAACTAAACCCAGG 61.170 55.000 0.00 0.00 0.00 4.45
8406 16235 1.579429 CACGCAACTAAACCCAGGC 59.421 57.895 0.00 0.00 0.00 4.85
8407 16236 1.149627 ACGCAACTAAACCCAGGCA 59.850 52.632 0.00 0.00 0.00 4.75
8408 16237 0.466555 ACGCAACTAAACCCAGGCAA 60.467 50.000 0.00 0.00 0.00 4.52
8409 16238 0.671251 CGCAACTAAACCCAGGCAAA 59.329 50.000 0.00 0.00 0.00 3.68
8410 16239 1.067821 CGCAACTAAACCCAGGCAAAA 59.932 47.619 0.00 0.00 0.00 2.44
8411 16240 2.482142 CGCAACTAAACCCAGGCAAAAA 60.482 45.455 0.00 0.00 0.00 1.94
8412 16241 3.738982 GCAACTAAACCCAGGCAAAAAT 58.261 40.909 0.00 0.00 0.00 1.82
8413 16242 4.133820 GCAACTAAACCCAGGCAAAAATT 58.866 39.130 0.00 0.00 0.00 1.82
8414 16243 4.024133 GCAACTAAACCCAGGCAAAAATTG 60.024 41.667 0.00 0.00 0.00 2.32
8427 16256 4.205065 CAAAAATTGCTCCCCTAATGCA 57.795 40.909 0.00 0.00 34.69 3.96
8428 16257 4.186159 CAAAAATTGCTCCCCTAATGCAG 58.814 43.478 0.00 0.00 38.01 4.41
8429 16258 2.077687 AATTGCTCCCCTAATGCAGG 57.922 50.000 0.00 0.00 45.07 4.85
8441 16270 1.396653 AATGCAGGAAGCCTACATGC 58.603 50.000 0.14 0.00 36.68 4.06
8442 16271 4.643795 GCAGGAAGCCTACATGCA 57.356 55.556 0.00 0.00 43.12 3.96
8443 16272 0.393402 TGCAGGAAGCCTACATGCAG 60.393 55.000 9.84 0.00 46.99 4.41
8444 16273 0.107508 GCAGGAAGCCTACATGCAGA 60.108 55.000 0.00 0.00 43.12 4.26
8445 16274 1.661341 CAGGAAGCCTACATGCAGAC 58.339 55.000 0.00 0.00 29.64 3.51
8446 16275 1.065926 CAGGAAGCCTACATGCAGACA 60.066 52.381 0.00 0.00 29.64 3.41
8447 16276 1.842562 AGGAAGCCTACATGCAGACAT 59.157 47.619 0.00 0.00 30.78 3.06
8448 16277 2.158842 AGGAAGCCTACATGCAGACATC 60.159 50.000 0.00 0.00 28.77 3.06
8449 16278 2.216898 GAAGCCTACATGCAGACATCC 58.783 52.381 0.00 0.00 32.87 3.51
8450 16279 1.206878 AGCCTACATGCAGACATCCA 58.793 50.000 0.00 0.00 32.87 3.41
8451 16280 1.561076 AGCCTACATGCAGACATCCAA 59.439 47.619 0.00 0.00 32.87 3.53
8452 16281 2.174210 AGCCTACATGCAGACATCCAAT 59.826 45.455 0.00 0.00 32.87 3.16
8453 16282 2.551459 GCCTACATGCAGACATCCAATC 59.449 50.000 0.00 0.00 32.87 2.67
8454 16283 3.812262 CCTACATGCAGACATCCAATCA 58.188 45.455 0.00 0.00 32.87 2.57
8455 16284 4.201657 CCTACATGCAGACATCCAATCAA 58.798 43.478 0.00 0.00 32.87 2.57
8456 16285 4.036027 CCTACATGCAGACATCCAATCAAC 59.964 45.833 0.00 0.00 32.87 3.18
8457 16286 3.423749 ACATGCAGACATCCAATCAACA 58.576 40.909 0.00 0.00 32.87 3.33
8494 16323 4.815040 TTTGCCTGCATTTTCAAACATG 57.185 36.364 0.00 0.00 0.00 3.21
8495 16324 2.144730 TGCCTGCATTTTCAAACATGC 58.855 42.857 6.87 6.87 45.20 4.06
8496 16325 1.465777 GCCTGCATTTTCAAACATGCC 59.534 47.619 10.45 0.00 44.49 4.40
8497 16326 2.872842 GCCTGCATTTTCAAACATGCCT 60.873 45.455 10.45 0.00 44.49 4.75
8498 16327 3.617045 GCCTGCATTTTCAAACATGCCTA 60.617 43.478 10.45 0.00 44.49 3.93
8499 16328 4.567971 CCTGCATTTTCAAACATGCCTAA 58.432 39.130 10.45 0.00 44.49 2.69
8500 16329 4.389687 CCTGCATTTTCAAACATGCCTAAC 59.610 41.667 10.45 0.00 44.49 2.34
8501 16330 5.212532 TGCATTTTCAAACATGCCTAACT 57.787 34.783 10.45 0.00 44.49 2.24
8502 16331 5.609423 TGCATTTTCAAACATGCCTAACTT 58.391 33.333 10.45 0.00 44.49 2.66
8503 16332 5.466058 TGCATTTTCAAACATGCCTAACTTG 59.534 36.000 10.45 0.00 44.49 3.16
8504 16333 5.106987 GCATTTTCAAACATGCCTAACTTGG 60.107 40.000 3.06 0.00 40.04 3.61
8505 16334 5.860941 TTTTCAAACATGCCTAACTTGGA 57.139 34.783 0.00 0.00 0.00 3.53
8506 16335 4.846779 TTCAAACATGCCTAACTTGGAC 57.153 40.909 0.00 0.00 0.00 4.02
8509 16338 4.218200 TCAAACATGCCTAACTTGGACATG 59.782 41.667 12.70 12.70 42.13 3.21
8510 16339 3.439857 ACATGCCTAACTTGGACATGT 57.560 42.857 0.00 0.00 43.27 3.21
8512 16341 5.116084 ACATGCCTAACTTGGACATGTAT 57.884 39.130 16.06 0.00 44.63 2.29
8513 16342 4.883585 ACATGCCTAACTTGGACATGTATG 59.116 41.667 16.06 0.00 44.63 2.39
8547 16379 1.674359 ACGATGCAGACAACCAAACA 58.326 45.000 0.00 0.00 0.00 2.83
8549 16381 1.660052 CGATGCAGACAACCAAACACG 60.660 52.381 0.00 0.00 0.00 4.49
8550 16382 1.601903 GATGCAGACAACCAAACACGA 59.398 47.619 0.00 0.00 0.00 4.35
8600 16432 0.881118 TTGATGAGCGGCAAAGTTCC 59.119 50.000 1.45 0.00 0.00 3.62
8601 16433 0.250684 TGATGAGCGGCAAAGTTCCA 60.251 50.000 1.45 0.00 0.00 3.53
8602 16434 0.449388 GATGAGCGGCAAAGTTCCAG 59.551 55.000 1.45 0.00 0.00 3.86
8606 16438 1.007387 GCGGCAAAGTTCCAGTTGG 60.007 57.895 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.602905 ACCTGGCAAAGCAGTACGAC 60.603 55.000 0.00 0.00 0.00 4.34
201 3604 1.675310 TGCTTGGTGAAGATGCCCG 60.675 57.895 0.00 0.00 0.00 6.13
265 3668 4.174762 GAGTAGTTGCCAGTACTTGCTAC 58.825 47.826 20.73 20.73 39.01 3.58
272 3675 1.481363 GGAGGGAGTAGTTGCCAGTAC 59.519 57.143 0.00 0.00 40.38 2.73
283 3686 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
284 3687 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
285 3688 7.010771 TCATATATATTATGGGACGGAGGGAG 58.989 42.308 0.00 0.00 0.00 4.30
286 3689 6.929338 TCATATATATTATGGGACGGAGGGA 58.071 40.000 0.00 0.00 0.00 4.20
288 3691 6.570571 CGCTCATATATATTATGGGACGGAGG 60.571 46.154 8.23 0.00 0.00 4.30
289 3692 6.016192 ACGCTCATATATATTATGGGACGGAG 60.016 42.308 16.12 0.00 32.96 4.63
292 3695 8.420374 AAAACGCTCATATATATTATGGGACG 57.580 34.615 8.23 11.19 34.00 4.79
322 3725 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
323 3726 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
324 3727 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
325 3728 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
326 3729 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
327 3730 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
330 3733 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
331 3734 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
332 3735 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
333 3736 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
334 3737 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
335 3738 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
336 3739 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
337 3740 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
338 3741 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
339 3742 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
340 3743 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
341 3744 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
342 3745 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
343 3746 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
344 3747 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
345 3748 7.846823 AGTACTCCCTCCATCCCATAATATAAG 59.153 40.741 0.00 0.00 0.00 1.73
346 3749 7.729350 AGTACTCCCTCCATCCCATAATATAA 58.271 38.462 0.00 0.00 0.00 0.98
347 3750 7.312162 AGTACTCCCTCCATCCCATAATATA 57.688 40.000 0.00 0.00 0.00 0.86
348 3751 6.185677 AGTACTCCCTCCATCCCATAATAT 57.814 41.667 0.00 0.00 0.00 1.28
349 3752 5.633473 AGTACTCCCTCCATCCCATAATA 57.367 43.478 0.00 0.00 0.00 0.98
350 3753 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
351 3754 4.422592 ACTAGTACTCCCTCCATCCCATAA 59.577 45.833 0.00 0.00 0.00 1.90
352 3755 3.995077 ACTAGTACTCCCTCCATCCCATA 59.005 47.826 0.00 0.00 0.00 2.74
353 3756 2.798368 ACTAGTACTCCCTCCATCCCAT 59.202 50.000 0.00 0.00 0.00 4.00
354 3757 2.177233 GACTAGTACTCCCTCCATCCCA 59.823 54.545 0.00 0.00 0.00 4.37
355 3758 2.447811 AGACTAGTACTCCCTCCATCCC 59.552 54.545 0.00 0.00 0.00 3.85
356 3759 3.887916 AGACTAGTACTCCCTCCATCC 57.112 52.381 0.00 0.00 0.00 3.51
357 3760 8.110908 ACATTATAGACTAGTACTCCCTCCATC 58.889 40.741 0.00 0.00 0.00 3.51
358 3761 8.002431 ACATTATAGACTAGTACTCCCTCCAT 57.998 38.462 0.00 0.00 0.00 3.41
359 3762 7.403837 ACATTATAGACTAGTACTCCCTCCA 57.596 40.000 0.00 0.00 0.00 3.86
360 3763 7.943447 TCAACATTATAGACTAGTACTCCCTCC 59.057 40.741 0.00 0.00 0.00 4.30
361 3764 8.921353 TCAACATTATAGACTAGTACTCCCTC 57.079 38.462 0.00 0.00 0.00 4.30
362 3765 9.884814 AATCAACATTATAGACTAGTACTCCCT 57.115 33.333 0.00 0.00 0.00 4.20
398 3801 4.772100 ACTGGTTTGCATATAACTTGGCTT 59.228 37.500 0.00 0.00 0.00 4.35
413 3816 2.356135 CCAATCCTACGGACTGGTTTG 58.644 52.381 2.32 0.00 43.35 2.93
463 3866 8.930760 CAAAGAAGACACGAAGATTTCTAATCT 58.069 33.333 0.00 0.00 0.00 2.40
521 3936 7.008628 GTGACAACACTTTTTGATGAAACTCTG 59.991 37.037 0.00 0.00 42.99 3.35
540 3955 5.940192 TCACATACAAATCCAGTGACAAC 57.060 39.130 0.00 0.00 34.59 3.32
572 3987 5.461737 ACACGCCACAAAAACATATTCTTTG 59.538 36.000 0.00 0.00 36.37 2.77
631 4046 2.148768 CCCCGGAGTTGTTAGTCAAAC 58.851 52.381 0.73 0.00 37.81 2.93
656 4071 8.390354 TCATTGCAAATATTTACTCTTCGTCTG 58.610 33.333 1.71 0.00 0.00 3.51
674 4089 3.181521 CGTTGTTCTATCGCTCATTGCAA 60.182 43.478 0.00 0.00 43.06 4.08
723 5124 2.819595 GATGCGGCGCCTCTTCAA 60.820 61.111 30.82 9.16 0.00 2.69
835 5243 2.290514 CGGATCCATGGCATCCACTATT 60.291 50.000 28.25 1.11 40.09 1.73
876 5284 2.693074 GGTTTTATTCATCCCCGTGCAT 59.307 45.455 0.00 0.00 0.00 3.96
885 5322 6.761242 GGTGGCCTTATTTGGTTTTATTCATC 59.239 38.462 3.32 0.00 0.00 2.92
901 5338 2.168936 CGTGGTACTTATGGTGGCCTTA 59.831 50.000 3.32 0.00 0.00 2.69
979 5425 2.023984 TGGATAGGAGAGCAGAGGTGAA 60.024 50.000 0.00 0.00 0.00 3.18
1061 5512 2.100031 TGCGAGCCATACACTTGCG 61.100 57.895 0.00 0.00 45.87 4.85
1070 5526 2.161855 TCTTCAAAATGTGCGAGCCAT 58.838 42.857 0.00 0.00 0.00 4.40
1149 5605 2.403132 GATGGCCCCCGATCTGGAAG 62.403 65.000 4.46 0.00 42.00 3.46
1161 5617 1.893808 CATACACCAGCGATGGCCC 60.894 63.158 21.97 0.00 41.24 5.80
1169 5625 3.490419 CGGGTAGTACTTCATACACCAGC 60.490 52.174 11.44 0.00 37.00 4.85
1182 7969 1.339291 GTGTAGCCATCCGGGTAGTAC 59.661 57.143 0.00 0.00 45.85 2.73
1233 8026 2.170187 GACCTCAGCCTGATCAAGACAT 59.830 50.000 0.00 0.00 0.00 3.06
1359 8152 0.995803 TATAGCAAACCTGTGGGCCA 59.004 50.000 0.00 0.00 35.63 5.36
1362 8155 4.780815 TGAGATTATAGCAAACCTGTGGG 58.219 43.478 0.00 0.00 38.88 4.61
6331 14065 4.575885 TGTACATACCTCTTGAAAGCACC 58.424 43.478 0.00 0.00 0.00 5.01
7553 15381 1.604278 GACCGCCTTCAGAATATTGCC 59.396 52.381 0.00 0.00 0.00 4.52
7555 15383 3.251729 CCATGACCGCCTTCAGAATATTG 59.748 47.826 0.00 0.00 0.00 1.90
7578 15406 2.158856 AGATGCTCAAATCCATCGCTCA 60.159 45.455 0.00 0.00 41.98 4.26
7614 15442 2.566724 AGAAGCTCCTTGAGAACAGAGG 59.433 50.000 0.00 0.00 0.00 3.69
7634 15462 1.228675 AGGGAGCAAGTTTGGCCAG 60.229 57.895 5.11 0.00 0.00 4.85
7657 15485 3.660865 AGTTTCGTTGCTTTCGACCTAT 58.339 40.909 0.00 0.00 37.05 2.57
7682 15510 6.413052 AGCGGCATGATAATCTTGATAATCT 58.587 36.000 1.45 0.00 0.00 2.40
7691 15519 5.841957 AAAAAGAAGCGGCATGATAATCT 57.158 34.783 1.45 0.00 0.00 2.40
7710 15538 7.441836 TCAATGCTAGTGTCTCTACTGAAAAA 58.558 34.615 0.00 0.00 32.19 1.94
7782 15610 0.753262 GATAAGCTGCCGAGGGAAGA 59.247 55.000 0.00 0.00 26.79 2.87
7788 15616 0.107703 TGGGTTGATAAGCTGCCGAG 60.108 55.000 0.00 0.00 0.00 4.63
7804 15632 3.953612 TGCCTTCTGCTACATTATTTGGG 59.046 43.478 0.00 0.00 42.00 4.12
7896 15724 9.132521 CCTGAAGACAATTTTACTGCATTAAAG 57.867 33.333 8.95 2.08 0.00 1.85
7897 15725 8.087750 CCCTGAAGACAATTTTACTGCATTAAA 58.912 33.333 5.23 5.23 0.00 1.52
7898 15726 7.232534 ACCCTGAAGACAATTTTACTGCATTAA 59.767 33.333 0.00 0.00 0.00 1.40
7903 15731 4.762251 AGACCCTGAAGACAATTTTACTGC 59.238 41.667 0.00 0.00 0.00 4.40
7905 15733 6.187727 TCAGACCCTGAAGACAATTTTACT 57.812 37.500 0.00 0.00 37.57 2.24
7944 15772 2.238521 TGAACAAAATGACAGGGCCTC 58.761 47.619 0.95 0.00 0.00 4.70
7945 15773 2.365293 GTTGAACAAAATGACAGGGCCT 59.635 45.455 0.00 0.00 0.00 5.19
7953 15781 4.350346 CACTCGCAAGTTGAACAAAATGA 58.650 39.130 7.16 0.00 31.71 2.57
7968 15796 1.896220 ATCTTGCTTTTCCACTCGCA 58.104 45.000 0.00 0.00 0.00 5.10
7976 15804 3.192212 AGTGCTGGCTAATCTTGCTTTTC 59.808 43.478 0.00 0.00 0.00 2.29
7980 15808 1.558756 AGAGTGCTGGCTAATCTTGCT 59.441 47.619 0.00 0.00 0.00 3.91
7994 15822 2.799412 CGCCAGAGATTCATTAGAGTGC 59.201 50.000 0.00 0.00 0.00 4.40
7997 15825 4.037327 TCTGTCGCCAGAGATTCATTAGAG 59.963 45.833 0.00 0.00 42.80 2.43
7998 15826 3.954258 TCTGTCGCCAGAGATTCATTAGA 59.046 43.478 0.00 0.00 42.80 2.10
7999 15827 4.313277 TCTGTCGCCAGAGATTCATTAG 57.687 45.455 0.00 0.00 42.80 1.73
8067 15895 5.127356 CCTAACCACTACCGATCTTTCTTCT 59.873 44.000 0.00 0.00 0.00 2.85
8081 15909 3.478175 TCTGGGCTAACCTAACCACTA 57.522 47.619 0.00 0.00 41.11 2.74
8098 15926 2.604011 CTCTTCGATTCTGCAGCTTCTG 59.396 50.000 9.47 5.27 34.12 3.02
8099 15927 2.495270 TCTCTTCGATTCTGCAGCTTCT 59.505 45.455 9.47 0.00 0.00 2.85
8114 15942 6.758886 TCTTCTTCCATCGCTTATTTCTCTTC 59.241 38.462 0.00 0.00 0.00 2.87
8127 15955 5.391416 GCTTTCTTTTCCTCTTCTTCCATCG 60.391 44.000 0.00 0.00 0.00 3.84
8158 15986 3.251972 GCTCCACCTTCTGAAAAGTTCTG 59.748 47.826 0.00 0.00 0.00 3.02
8162 15990 2.439507 TGAGCTCCACCTTCTGAAAAGT 59.560 45.455 12.15 0.00 0.00 2.66
8167 15996 2.027745 GTGAATGAGCTCCACCTTCTGA 60.028 50.000 12.15 0.00 0.00 3.27
8219 16048 5.428253 AGCCGCTTTGATCTTAACTGAATA 58.572 37.500 0.00 0.00 0.00 1.75
8220 16049 4.265073 AGCCGCTTTGATCTTAACTGAAT 58.735 39.130 0.00 0.00 0.00 2.57
8249 16078 1.677300 TGGCGCACCCATTTACTGG 60.677 57.895 10.83 0.00 45.51 4.00
8250 16079 3.995074 TGGCGCACCCATTTACTG 58.005 55.556 10.83 0.00 39.18 2.74
8260 16089 4.152625 GTGCTCGTGATGGCGCAC 62.153 66.667 10.83 0.00 44.73 5.34
8261 16090 4.678499 TGTGCTCGTGATGGCGCA 62.678 61.111 10.83 0.00 44.92 6.09
8262 16091 4.152625 GTGTGCTCGTGATGGCGC 62.153 66.667 0.00 0.00 39.13 6.53
8263 16092 2.433145 AGTGTGCTCGTGATGGCG 60.433 61.111 0.00 0.00 0.00 5.69
8264 16093 3.031964 GCAGTGTGCTCGTGATGGC 62.032 63.158 0.00 0.00 40.96 4.40
8265 16094 2.393768 GGCAGTGTGCTCGTGATGG 61.394 63.158 0.00 0.00 44.28 3.51
8266 16095 1.229975 TTGGCAGTGTGCTCGTGATG 61.230 55.000 0.00 0.00 44.28 3.07
8267 16096 0.952497 CTTGGCAGTGTGCTCGTGAT 60.952 55.000 0.00 0.00 44.28 3.06
8268 16097 1.595109 CTTGGCAGTGTGCTCGTGA 60.595 57.895 0.00 0.00 44.28 4.35
8269 16098 2.610694 CCTTGGCAGTGTGCTCGTG 61.611 63.158 0.00 0.00 44.28 4.35
8270 16099 2.281070 CCTTGGCAGTGTGCTCGT 60.281 61.111 0.00 0.00 44.28 4.18
8271 16100 1.597854 TTCCTTGGCAGTGTGCTCG 60.598 57.895 0.00 0.00 44.28 5.03
8272 16101 0.536006 AGTTCCTTGGCAGTGTGCTC 60.536 55.000 0.00 0.00 44.28 4.26
8273 16102 0.536006 GAGTTCCTTGGCAGTGTGCT 60.536 55.000 0.00 0.00 44.28 4.40
8274 16103 0.536006 AGAGTTCCTTGGCAGTGTGC 60.536 55.000 0.00 0.00 44.08 4.57
8275 16104 2.037772 ACTAGAGTTCCTTGGCAGTGTG 59.962 50.000 0.00 0.00 0.00 3.82
8276 16105 2.037772 CACTAGAGTTCCTTGGCAGTGT 59.962 50.000 0.00 0.00 0.00 3.55
8277 16106 2.037772 ACACTAGAGTTCCTTGGCAGTG 59.962 50.000 0.00 0.00 38.26 3.66
8278 16107 2.330216 ACACTAGAGTTCCTTGGCAGT 58.670 47.619 0.00 0.00 0.00 4.40
8279 16108 4.021016 AGTTACACTAGAGTTCCTTGGCAG 60.021 45.833 0.00 0.00 0.00 4.85
8280 16109 3.901844 AGTTACACTAGAGTTCCTTGGCA 59.098 43.478 0.00 0.00 0.00 4.92
8281 16110 4.221041 AGAGTTACACTAGAGTTCCTTGGC 59.779 45.833 0.00 0.00 0.00 4.52
8282 16111 5.986501 AGAGTTACACTAGAGTTCCTTGG 57.013 43.478 0.00 0.00 0.00 3.61
8283 16112 7.971168 CACATAGAGTTACACTAGAGTTCCTTG 59.029 40.741 0.00 0.00 0.00 3.61
8284 16113 7.670559 ACACATAGAGTTACACTAGAGTTCCTT 59.329 37.037 0.00 0.00 0.00 3.36
8285 16114 7.176490 ACACATAGAGTTACACTAGAGTTCCT 58.824 38.462 0.00 0.00 0.00 3.36
8286 16115 7.120873 TGACACATAGAGTTACACTAGAGTTCC 59.879 40.741 0.00 0.00 0.00 3.62
8287 16116 8.041829 TGACACATAGAGTTACACTAGAGTTC 57.958 38.462 0.00 0.00 0.00 3.01
8288 16117 7.997773 TGACACATAGAGTTACACTAGAGTT 57.002 36.000 0.00 0.00 0.00 3.01
8289 16118 7.415765 GCATGACACATAGAGTTACACTAGAGT 60.416 40.741 0.00 0.00 0.00 3.24
8290 16119 6.915300 GCATGACACATAGAGTTACACTAGAG 59.085 42.308 0.00 0.00 0.00 2.43
8291 16120 6.458342 CGCATGACACATAGAGTTACACTAGA 60.458 42.308 0.00 0.00 0.00 2.43
8292 16121 5.683302 CGCATGACACATAGAGTTACACTAG 59.317 44.000 0.00 0.00 0.00 2.57
8293 16122 5.124936 ACGCATGACACATAGAGTTACACTA 59.875 40.000 0.00 0.00 0.00 2.74
8294 16123 4.082190 ACGCATGACACATAGAGTTACACT 60.082 41.667 0.00 0.00 0.00 3.55
8295 16124 4.174009 ACGCATGACACATAGAGTTACAC 58.826 43.478 0.00 0.00 0.00 2.90
8296 16125 4.450082 ACGCATGACACATAGAGTTACA 57.550 40.909 0.00 0.00 0.00 2.41
8297 16126 4.441415 GCTACGCATGACACATAGAGTTAC 59.559 45.833 0.00 0.00 0.00 2.50
8298 16127 4.338400 AGCTACGCATGACACATAGAGTTA 59.662 41.667 0.00 0.00 0.00 2.24
8299 16128 3.131223 AGCTACGCATGACACATAGAGTT 59.869 43.478 0.00 0.00 0.00 3.01
8300 16129 2.690497 AGCTACGCATGACACATAGAGT 59.310 45.455 0.00 0.00 0.00 3.24
8301 16130 3.048501 CAGCTACGCATGACACATAGAG 58.951 50.000 0.00 0.00 0.00 2.43
8302 16131 2.427095 ACAGCTACGCATGACACATAGA 59.573 45.455 0.00 0.00 0.00 1.98
8303 16132 2.814269 ACAGCTACGCATGACACATAG 58.186 47.619 0.00 0.00 0.00 2.23
8304 16133 2.959507 ACAGCTACGCATGACACATA 57.040 45.000 0.00 0.00 0.00 2.29
8305 16134 2.099141 AACAGCTACGCATGACACAT 57.901 45.000 0.00 0.00 0.00 3.21
8306 16135 2.734276 TAACAGCTACGCATGACACA 57.266 45.000 0.00 0.00 0.00 3.72
8307 16136 2.993899 AGTTAACAGCTACGCATGACAC 59.006 45.455 8.61 0.00 0.00 3.67
8308 16137 3.056821 AGAGTTAACAGCTACGCATGACA 60.057 43.478 8.61 0.00 0.00 3.58
8309 16138 3.512680 AGAGTTAACAGCTACGCATGAC 58.487 45.455 8.61 0.00 0.00 3.06
8310 16139 3.868757 AGAGTTAACAGCTACGCATGA 57.131 42.857 8.61 0.00 0.00 3.07
8311 16140 6.255670 TGATTAAGAGTTAACAGCTACGCATG 59.744 38.462 8.61 0.00 0.00 4.06
8312 16141 6.255887 GTGATTAAGAGTTAACAGCTACGCAT 59.744 38.462 8.61 0.00 0.00 4.73
8313 16142 5.575606 GTGATTAAGAGTTAACAGCTACGCA 59.424 40.000 8.61 0.00 0.00 5.24
8314 16143 5.275788 CGTGATTAAGAGTTAACAGCTACGC 60.276 44.000 8.61 4.23 0.00 4.42
8315 16144 5.798934 ACGTGATTAAGAGTTAACAGCTACG 59.201 40.000 8.61 12.20 0.00 3.51
8316 16145 7.445836 CAACGTGATTAAGAGTTAACAGCTAC 58.554 38.462 8.61 0.00 0.00 3.58
8317 16146 6.090358 GCAACGTGATTAAGAGTTAACAGCTA 59.910 38.462 8.61 0.00 0.00 3.32
8318 16147 5.107065 GCAACGTGATTAAGAGTTAACAGCT 60.107 40.000 8.61 1.67 0.00 4.24
8319 16148 5.080068 GCAACGTGATTAAGAGTTAACAGC 58.920 41.667 8.61 0.00 0.00 4.40
8320 16149 6.467723 AGCAACGTGATTAAGAGTTAACAG 57.532 37.500 8.61 0.00 0.00 3.16
8321 16150 6.259167 ACAAGCAACGTGATTAAGAGTTAACA 59.741 34.615 8.61 0.00 0.00 2.41
8322 16151 6.656003 ACAAGCAACGTGATTAAGAGTTAAC 58.344 36.000 0.00 0.00 0.00 2.01
8323 16152 6.854496 ACAAGCAACGTGATTAAGAGTTAA 57.146 33.333 0.00 0.00 0.00 2.01
8324 16153 7.412563 GCATACAAGCAACGTGATTAAGAGTTA 60.413 37.037 0.00 0.00 0.00 2.24
8325 16154 6.620733 GCATACAAGCAACGTGATTAAGAGTT 60.621 38.462 0.00 0.00 0.00 3.01
8326 16155 5.163854 GCATACAAGCAACGTGATTAAGAGT 60.164 40.000 0.00 0.00 0.00 3.24
8327 16156 5.163864 TGCATACAAGCAACGTGATTAAGAG 60.164 40.000 0.00 0.00 42.46 2.85
8328 16157 4.693095 TGCATACAAGCAACGTGATTAAGA 59.307 37.500 0.00 0.00 42.46 2.10
8329 16158 4.968626 TGCATACAAGCAACGTGATTAAG 58.031 39.130 0.00 0.00 42.46 1.85
8341 16170 5.632347 GCCTGATATTTGATTGCATACAAGC 59.368 40.000 0.00 0.00 42.60 4.01
8342 16171 6.639686 GTGCCTGATATTTGATTGCATACAAG 59.360 38.462 0.00 0.00 39.69 3.16
8343 16172 6.321945 AGTGCCTGATATTTGATTGCATACAA 59.678 34.615 0.00 0.00 40.87 2.41
8344 16173 5.829391 AGTGCCTGATATTTGATTGCATACA 59.171 36.000 0.00 0.00 0.00 2.29
8345 16174 6.323203 AGTGCCTGATATTTGATTGCATAC 57.677 37.500 0.00 0.00 0.00 2.39
8346 16175 6.736519 GCAAGTGCCTGATATTTGATTGCATA 60.737 38.462 0.00 0.00 40.07 3.14
8347 16176 5.597806 CAAGTGCCTGATATTTGATTGCAT 58.402 37.500 0.00 0.00 0.00 3.96
8348 16177 4.678574 GCAAGTGCCTGATATTTGATTGCA 60.679 41.667 0.00 0.00 40.07 4.08
8349 16178 3.800506 GCAAGTGCCTGATATTTGATTGC 59.199 43.478 0.00 0.00 34.46 3.56
8350 16179 5.001237 TGCAAGTGCCTGATATTTGATTG 57.999 39.130 0.00 0.00 41.18 2.67
8351 16180 5.361571 TGATGCAAGTGCCTGATATTTGATT 59.638 36.000 0.00 0.00 41.18 2.57
8352 16181 4.891168 TGATGCAAGTGCCTGATATTTGAT 59.109 37.500 0.00 0.00 41.18 2.57
8353 16182 4.271661 TGATGCAAGTGCCTGATATTTGA 58.728 39.130 0.00 0.00 41.18 2.69
8354 16183 4.607955 CTGATGCAAGTGCCTGATATTTG 58.392 43.478 0.00 0.00 41.18 2.32
8355 16184 3.067742 GCTGATGCAAGTGCCTGATATTT 59.932 43.478 0.00 0.00 41.18 1.40
8356 16185 2.621998 GCTGATGCAAGTGCCTGATATT 59.378 45.455 0.00 0.00 41.18 1.28
8357 16186 2.158652 AGCTGATGCAAGTGCCTGATAT 60.159 45.455 0.00 0.00 42.74 1.63
8358 16187 1.211212 AGCTGATGCAAGTGCCTGATA 59.789 47.619 0.00 0.00 42.74 2.15
8359 16188 0.034380 AGCTGATGCAAGTGCCTGAT 60.034 50.000 0.00 0.00 42.74 2.90
8360 16189 0.251033 AAGCTGATGCAAGTGCCTGA 60.251 50.000 0.00 0.00 42.74 3.86
8361 16190 1.400846 CTAAGCTGATGCAAGTGCCTG 59.599 52.381 0.00 0.00 42.74 4.85
8362 16191 1.747709 CTAAGCTGATGCAAGTGCCT 58.252 50.000 0.00 0.00 42.74 4.75
8363 16192 0.100146 GCTAAGCTGATGCAAGTGCC 59.900 55.000 0.00 0.00 42.74 5.01
8364 16193 0.100146 GGCTAAGCTGATGCAAGTGC 59.900 55.000 0.00 0.00 42.74 4.40
8365 16194 1.456296 TGGCTAAGCTGATGCAAGTG 58.544 50.000 0.00 0.00 42.74 3.16
8366 16195 2.205022 TTGGCTAAGCTGATGCAAGT 57.795 45.000 0.00 0.00 42.74 3.16
8367 16196 2.798499 GCATTGGCTAAGCTGATGCAAG 60.798 50.000 15.01 0.00 41.98 4.01
8368 16197 1.135527 GCATTGGCTAAGCTGATGCAA 59.864 47.619 15.01 0.00 41.98 4.08
8369 16198 0.742505 GCATTGGCTAAGCTGATGCA 59.257 50.000 15.01 0.00 41.98 3.96
8370 16199 0.742505 TGCATTGGCTAAGCTGATGC 59.257 50.000 13.67 13.67 42.36 3.91
8371 16200 1.268386 CGTGCATTGGCTAAGCTGATG 60.268 52.381 0.00 0.00 41.91 3.07
8372 16201 1.019673 CGTGCATTGGCTAAGCTGAT 58.980 50.000 0.00 0.00 41.91 2.90
8373 16202 1.647545 GCGTGCATTGGCTAAGCTGA 61.648 55.000 0.00 0.00 41.91 4.26
8374 16203 1.226491 GCGTGCATTGGCTAAGCTG 60.226 57.895 0.00 0.00 41.91 4.24
8375 16204 1.243342 TTGCGTGCATTGGCTAAGCT 61.243 50.000 0.00 0.00 41.91 3.74
8376 16205 1.072666 GTTGCGTGCATTGGCTAAGC 61.073 55.000 0.00 0.00 41.91 3.09
8377 16206 0.523072 AGTTGCGTGCATTGGCTAAG 59.477 50.000 0.00 0.00 41.91 2.18
8378 16207 1.814793 TAGTTGCGTGCATTGGCTAA 58.185 45.000 0.00 0.00 41.91 3.09
8379 16208 1.814793 TTAGTTGCGTGCATTGGCTA 58.185 45.000 0.00 0.00 41.91 3.93
8380 16209 0.958091 TTTAGTTGCGTGCATTGGCT 59.042 45.000 0.00 0.00 41.91 4.75
8381 16210 1.059942 GTTTAGTTGCGTGCATTGGC 58.940 50.000 0.00 0.00 41.68 4.52
8382 16211 1.668628 GGGTTTAGTTGCGTGCATTGG 60.669 52.381 0.00 0.00 0.00 3.16
8383 16212 1.000827 TGGGTTTAGTTGCGTGCATTG 60.001 47.619 0.00 0.00 0.00 2.82
8384 16213 1.269448 CTGGGTTTAGTTGCGTGCATT 59.731 47.619 0.00 0.00 0.00 3.56
8385 16214 0.881118 CTGGGTTTAGTTGCGTGCAT 59.119 50.000 0.00 0.00 0.00 3.96
8386 16215 1.169661 CCTGGGTTTAGTTGCGTGCA 61.170 55.000 0.00 0.00 0.00 4.57
8387 16216 1.579429 CCTGGGTTTAGTTGCGTGC 59.421 57.895 0.00 0.00 0.00 5.34
8388 16217 1.169661 TGCCTGGGTTTAGTTGCGTG 61.170 55.000 0.00 0.00 0.00 5.34
8389 16218 0.466555 TTGCCTGGGTTTAGTTGCGT 60.467 50.000 0.00 0.00 0.00 5.24
8390 16219 0.671251 TTTGCCTGGGTTTAGTTGCG 59.329 50.000 0.00 0.00 0.00 4.85
8391 16220 2.900716 TTTTGCCTGGGTTTAGTTGC 57.099 45.000 0.00 0.00 0.00 4.17
8392 16221 5.671742 CAATTTTTGCCTGGGTTTAGTTG 57.328 39.130 0.00 0.00 0.00 3.16
8406 16235 4.186159 CTGCATTAGGGGAGCAATTTTTG 58.814 43.478 0.00 0.00 37.89 2.44
8407 16236 3.198417 CCTGCATTAGGGGAGCAATTTTT 59.802 43.478 0.00 0.00 43.33 1.94
8408 16237 2.767960 CCTGCATTAGGGGAGCAATTTT 59.232 45.455 0.00 0.00 43.33 1.82
8409 16238 2.391678 CCTGCATTAGGGGAGCAATTT 58.608 47.619 0.00 0.00 43.33 1.82
8410 16239 2.077687 CCTGCATTAGGGGAGCAATT 57.922 50.000 0.00 0.00 43.33 2.32
8411 16240 3.835810 CCTGCATTAGGGGAGCAAT 57.164 52.632 0.00 0.00 43.33 3.56
8412 16241 4.923178 GCTTCCTGCATTAGGGGAGCAA 62.923 54.545 16.30 0.00 46.49 3.91
8413 16242 3.477607 GCTTCCTGCATTAGGGGAGCA 62.478 57.143 16.30 0.00 46.49 4.26
8425 16254 0.107508 TCTGCATGTAGGCTTCCTGC 60.108 55.000 11.15 13.08 41.94 4.85
8426 16255 1.065926 TGTCTGCATGTAGGCTTCCTG 60.066 52.381 16.58 0.00 34.61 3.86
8427 16256 1.279496 TGTCTGCATGTAGGCTTCCT 58.721 50.000 16.58 0.00 37.71 3.36
8428 16257 2.216898 GATGTCTGCATGTAGGCTTCC 58.783 52.381 16.58 2.21 35.07 3.46
8429 16258 2.216898 GGATGTCTGCATGTAGGCTTC 58.783 52.381 18.92 18.92 35.07 3.86
8430 16259 1.561076 TGGATGTCTGCATGTAGGCTT 59.439 47.619 16.58 10.20 35.07 4.35
8431 16260 1.206878 TGGATGTCTGCATGTAGGCT 58.793 50.000 16.58 2.20 35.07 4.58
8432 16261 2.042686 TTGGATGTCTGCATGTAGGC 57.957 50.000 8.64 8.64 35.07 3.93
8433 16262 3.812262 TGATTGGATGTCTGCATGTAGG 58.188 45.455 11.15 0.00 35.07 3.18
8434 16263 4.637091 TGTTGATTGGATGTCTGCATGTAG 59.363 41.667 4.14 4.14 35.07 2.74
8435 16264 4.587891 TGTTGATTGGATGTCTGCATGTA 58.412 39.130 0.00 0.00 35.07 2.29
8436 16265 3.423749 TGTTGATTGGATGTCTGCATGT 58.576 40.909 0.00 0.00 35.07 3.21
8437 16266 4.359706 CATGTTGATTGGATGTCTGCATG 58.640 43.478 0.00 0.00 35.07 4.06
8438 16267 3.181479 GCATGTTGATTGGATGTCTGCAT 60.181 43.478 0.00 0.00 38.18 3.96
8439 16268 2.164827 GCATGTTGATTGGATGTCTGCA 59.835 45.455 0.00 0.00 0.00 4.41
8440 16269 2.164827 TGCATGTTGATTGGATGTCTGC 59.835 45.455 0.00 0.00 0.00 4.26
8441 16270 3.692593 TCTGCATGTTGATTGGATGTCTG 59.307 43.478 0.00 0.00 0.00 3.51
8442 16271 3.959293 TCTGCATGTTGATTGGATGTCT 58.041 40.909 0.00 0.00 0.00 3.41
8443 16272 4.097437 ACATCTGCATGTTGATTGGATGTC 59.903 41.667 6.61 0.00 40.66 3.06
8444 16273 4.021229 ACATCTGCATGTTGATTGGATGT 58.979 39.130 6.61 6.61 40.66 3.06
8445 16274 4.649088 ACATCTGCATGTTGATTGGATG 57.351 40.909 5.52 5.52 40.66 3.51
8486 16315 3.826524 TGTCCAAGTTAGGCATGTTTGA 58.173 40.909 0.00 0.00 0.00 2.69
8487 16316 4.022068 ACATGTCCAAGTTAGGCATGTTTG 60.022 41.667 14.66 0.00 45.46 2.93
8488 16317 4.151883 ACATGTCCAAGTTAGGCATGTTT 58.848 39.130 14.66 0.00 45.46 2.83
8489 16318 3.766545 ACATGTCCAAGTTAGGCATGTT 58.233 40.909 14.66 1.39 45.46 2.71
8491 16320 4.261322 GCATACATGTCCAAGTTAGGCATG 60.261 45.833 13.40 13.40 43.06 4.06
8494 16323 3.278574 TGCATACATGTCCAAGTTAGGC 58.721 45.455 0.00 0.00 0.00 3.93
8495 16324 5.415701 ACTTTGCATACATGTCCAAGTTAGG 59.584 40.000 0.00 0.00 0.00 2.69
8496 16325 6.317088 CACTTTGCATACATGTCCAAGTTAG 58.683 40.000 0.00 2.56 0.00 2.34
8497 16326 5.335583 GCACTTTGCATACATGTCCAAGTTA 60.336 40.000 0.00 0.00 44.26 2.24
8498 16327 4.559300 GCACTTTGCATACATGTCCAAGTT 60.559 41.667 0.00 0.00 44.26 2.66
8499 16328 3.057315 GCACTTTGCATACATGTCCAAGT 60.057 43.478 0.00 0.00 44.26 3.16
8500 16329 3.504863 GCACTTTGCATACATGTCCAAG 58.495 45.455 0.00 0.00 44.26 3.61
8501 16330 3.574284 GCACTTTGCATACATGTCCAA 57.426 42.857 0.00 1.78 44.26 3.53
8513 16342 2.408368 GCATCGTTTTTAGGCACTTTGC 59.592 45.455 0.00 0.00 44.08 3.68
8547 16379 3.973206 TCATAGTGAACCCAATGTCGT 57.027 42.857 0.00 0.00 0.00 4.34
8549 16381 7.865706 AGTTTATCATAGTGAACCCAATGTC 57.134 36.000 0.00 0.00 0.00 3.06
8550 16382 7.499232 GCTAGTTTATCATAGTGAACCCAATGT 59.501 37.037 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.